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Conserved domains on  [gi|14251133|ref|NP_116500|]
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head-tail connector protein [Lactococcus phage BK5-T]

Protein Classification

head-tail connector protein( domain architecture ID 10169104)

phage gp6-like head-tail connector protein is critical in the assembly of the connector, a specialized phage structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage

Gene Ontology:  GO:0016032
PubMed:  19895817

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
gp6 cd08054
Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; The bacteriophage ...
4-89 6.83e-09

Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.


:

Pssm-ID: 153446  Cd Length: 91  Bit Score: 48.85  E-value: 6.83e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251133   4 TVDDLLDQLS-EDDDRKPQLQIYFDTAKAYVKNAVSSDtVDAPFFSVENVYPIYDVAVLSYSMDLWINRSTTMPPTT--- 79
Cdd:cd08054   1 TLEEAKAHLRiDHDDDDALIELLIDAAEEYIENYTGRD-LDEQTADAEEVPALIKLAVLLLVAHLYENREAVTDVTAsel 79
                        90
                ....*....|..
gi 14251133  80 --AVDHMVGQLR 89
Cdd:cd08054  80 pfGVESLLAPYR 91
 
Name Accession Description Interval E-value
gp6 cd08054
Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; The bacteriophage ...
4-89 6.83e-09

Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.


Pssm-ID: 153446  Cd Length: 91  Bit Score: 48.85  E-value: 6.83e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251133   4 TVDDLLDQLS-EDDDRKPQLQIYFDTAKAYVKNAVSSDtVDAPFFSVENVYPIYDVAVLSYSMDLWINRSTTMPPTT--- 79
Cdd:cd08054   1 TLEEAKAHLRiDHDDDDALIELLIDAAEEYIENYTGRD-LDEQTADAEEVPALIKLAVLLLVAHLYENREAVTDVTAsel 79
                        90
                ....*....|..
gi 14251133  80 --AVDHMVGQLR 89
Cdd:cd08054  80 pfGVESLLAPYR 91
 
Name Accession Description Interval E-value
gp6 cd08054
Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; The bacteriophage ...
4-89 6.83e-09

Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.


Pssm-ID: 153446  Cd Length: 91  Bit Score: 48.85  E-value: 6.83e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251133   4 TVDDLLDQLS-EDDDRKPQLQIYFDTAKAYVKNAVSSDtVDAPFFSVENVYPIYDVAVLSYSMDLWINRSTTMPPTT--- 79
Cdd:cd08054   1 TLEEAKAHLRiDHDDDDALIELLIDAAEEYIENYTGRD-LDEQTADAEEVPALIKLAVLLLVAHLYENREAVTDVTAsel 79
                        90
                ....*....|..
gi 14251133  80 --AVDHMVGQLR 89
Cdd:cd08054  80 pfGVESLLAPYR 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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