NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|14719428|ref|NP_149024|]
View 

thymic stromal lymphopoietin isoform 1 precursor [Homo sapiens]

Protein Classification

TSLP domain-containing protein( domain architecture ID 10633582)

TSLP domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
TSLP pfam15216
Thymic stromal lymphopoietin;
29-153 6.28e-81

Thymic stromal lymphopoietin;


:

Pssm-ID: 464567  Cd Length: 125  Bit Score: 234.84  E-value: 6.28e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14719428    29 YDFTNCDFEKIKAAYLSTISKDLITYMSGTKSTEFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAI 108
Cdd:pfam15216   1 YNFTNCDFTKIKKIYCNTIFHDLTTYMKGTKSTQFNNTIFCSNRPHCLTKIESLTFNPTPGCASLAKEMFARRTKAALAD 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 14719428   109 WCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNR 153
Cdd:pfam15216  81 WCPGYPETQINATQEMKKRKKRKVTTNKCLEQVSQLQGLWRRFMR 125
 
Name Accession Description Interval E-value
TSLP pfam15216
Thymic stromal lymphopoietin;
29-153 6.28e-81

Thymic stromal lymphopoietin;


Pssm-ID: 464567  Cd Length: 125  Bit Score: 234.84  E-value: 6.28e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14719428    29 YDFTNCDFEKIKAAYLSTISKDLITYMSGTKSTEFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAI 108
Cdd:pfam15216   1 YNFTNCDFTKIKKIYCNTIFHDLTTYMKGTKSTQFNNTIFCSNRPHCLTKIESLTFNPTPGCASLAKEMFARRTKAALAD 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 14719428   109 WCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNR 153
Cdd:pfam15216  81 WCPGYPETQINATQEMKKRKKRKVTTNKCLEQVSQLQGLWRRFMR 125
 
Name Accession Description Interval E-value
TSLP pfam15216
Thymic stromal lymphopoietin;
29-153 6.28e-81

Thymic stromal lymphopoietin;


Pssm-ID: 464567  Cd Length: 125  Bit Score: 234.84  E-value: 6.28e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14719428    29 YDFTNCDFEKIKAAYLSTISKDLITYMSGTKSTEFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAI 108
Cdd:pfam15216   1 YNFTNCDFTKIKKIYCNTIFHDLTTYMKGTKSTQFNNTIFCSNRPHCLTKIESLTFNPTPGCASLAKEMFARRTKAALAD 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 14719428   109 WCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNR 153
Cdd:pfam15216  81 WCPGYPETQINATQEMKKRKKRKVTTNKCLEQVSQLQGLWRRFMR 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH