|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
102-337 |
3.66e-23 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 100.01 E-value: 3.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 102 YLYLQNNFITELPlESFQNATGLRWVNLDNNRIRKVDqRVLGKLPSLAFLYMEKNQLEEVPSALPR--NLEQLRLSQNLI 179
Cdd:COG4886 117 SLDLSGNQLTDLP-EELANLTNLKELDLSNNQLTDLP-EPLGNLTNLKSLDLSNNQLTDLPEELGNltNLKELDLSNNQI 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 180 SRIPpgvfsklenlllldlqhnrlsdgvfkaDTFQGLKNLMQLNLAHNILRKMPPKVPQ--AIHQLYLDSNKIETIPNgy 257
Cdd:COG4886 195 TDLP---------------------------EPLGNLTNLEELDLSGNQLTDLPEPLANltNLETLDLSNNQLTDLPE-- 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 258 FKDFPNLAFIRMNYNKLSDrgLPKnSFNISNLLVLHLSHNKISNVpaisnKLEHLYLNNNSIEKINGTQICPNNLVAFHD 337
Cdd:COG4886 246 LGNLTNLEELDLSNNQLTD--LPP-LANLTNLKTLDLSNNQLTDL-----KLKELELLLGLNSLLLLLLLLNLLELLILL 317
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
129-349 |
7.55e-11 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 63.56 E-value: 7.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 129 LDNNRIRKVDQRVLGKLPSLaflYMEKNQLEEVPSALPRNLEQLRLSQNLISRIPPGVFSKLENLLLLdlqHNRLSdgvF 208
Cdd:PRK15370 206 LDNNELKSLPENLQGNIKTL---YANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLF---HNKIS---C 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 209 KADTFQglKNLMQLNLAHNILRKMPPKVPQAIHQLYLDSNKI----ETIPngyfkdfPNLAFIRMNYNKLSD--RGLPkn 282
Cdd:PRK15370 277 LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLtalpETLP-------PGLKTLEAGENALTSlpASLP-- 345
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 229608920 283 sfniSNLLVLHLSHNKISNVP-AISNKLEHLYLNNNSIEKIngtqicPNNLVA--------FHDFSSDLENVPHLR 349
Cdd:PRK15370 346 ----PELQVLDVSKNQITVLPeTLPPTITTLDVSRNALTNL------PENLPAalqimqasRNNLVRLPESLPHFR 411
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
99-356 |
2.60e-10 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 59.80 E-value: 2.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 99 RIHYLYLQNNFITELP-LESFQNATGLRwvnLDNNRIRKVDQrvLGKLPSLAFLYMEKNQLEEVP--SALpRNLEQLRLS 175
Cdd:cd21340 3 RITHLYLNDKNITKIDnLSLCKNLKVLY---LYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIEnlENL-VNLKKLYLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 176 QNLISRIppgvfsklenlllldlqhnrlsDGvfkadtFQGLKNLMQLNLAHNILrkmPPKvpqaiHQLYLDSNKIETIPN 255
Cdd:cd21340 77 GNRISVV----------------------EG------LENLTNLEELHIENQRL---PPG-----EKLTFDPRSLAALSN 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 256 gyfkdfpnlafirmnynklsdrglpknsfnisNLLVLHLSHNKISNVPAISN--KLEHLYLNNNSIEKingtqicpnnlv 333
Cdd:cd21340 121 --------------------------------SLRVLNISGNNIDSLEPLAPlrNLEQLDASNNQISD------------ 156
|
250 260
....*....|....*....|...
gi 229608920 334 aFHDFSSDLENVPHLRYLRLDGN 356
Cdd:cd21340 157 -LEELLDLLSSWPSLRELDLTGN 178
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
98-158 |
2.03e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 53.30 E-value: 2.03e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 229608920 98 PRIHYLYLQNNFITELPLESFQNATGLRWVNLDNNRIRKVDQRVLGKLPSLAFLYMEKNQL 158
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRRNT |
smart00013 |
Leucine rich repeat N-terminal domain; |
68-103 |
5.82e-06 |
|
Leucine rich repeat N-terminal domain;
Pssm-ID: 214470 [Multi-domain] Cd Length: 33 Bit Score: 42.69 E-value: 5.82e-06
10 20 30
....*....|....*....|....*....|....*.
gi 229608920 68 DCPRECYCPPdfpSALYCDSRNLRRVPVIPPRIHYL 103
Cdd:smart00013 1 ACPAPCNCSG---TAVDCSGRGLTEVPLDLPPDTTL 33
|
|
| LRRNT |
pfam01462 |
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ... |
68-98 |
1.13e-03 |
|
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.
Pssm-ID: 396168 [Multi-domain] Cd Length: 28 Bit Score: 36.07 E-value: 1.13e-03
10 20 30
....*....|....*....|....*....|.
gi 229608920 68 DCPRECYCPPdfpSALYCDSRNLRRVPVIPP 98
Cdd:pfam01462 1 ACPVPCHCSA---TVVNCSDRGLTAVPRDLP 28
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
102-337 |
3.66e-23 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 100.01 E-value: 3.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 102 YLYLQNNFITELPlESFQNATGLRWVNLDNNRIRKVDqRVLGKLPSLAFLYMEKNQLEEVPSALPR--NLEQLRLSQNLI 179
Cdd:COG4886 117 SLDLSGNQLTDLP-EELANLTNLKELDLSNNQLTDLP-EPLGNLTNLKSLDLSNNQLTDLPEELGNltNLKELDLSNNQI 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 180 SRIPpgvfsklenlllldlqhnrlsdgvfkaDTFQGLKNLMQLNLAHNILRKMPPKVPQ--AIHQLYLDSNKIETIPNgy 257
Cdd:COG4886 195 TDLP---------------------------EPLGNLTNLEELDLSGNQLTDLPEPLANltNLETLDLSNNQLTDLPE-- 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 258 FKDFPNLAFIRMNYNKLSDrgLPKnSFNISNLLVLHLSHNKISNVpaisnKLEHLYLNNNSIEKINGTQICPNNLVAFHD 337
Cdd:COG4886 246 LGNLTNLEELDLSNNQLTD--LPP-LANLTNLKTLDLSNNQLTDL-----KLKELELLLGLNSLLLLLLLLNLLELLILL 317
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
105-359 |
2.42e-21 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 94.62 E-value: 2.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 105 LQNNFITELPLESFQNATGLRWVNLDNNRIrkvdqrvLGKLPSLAFLYMEKNQLEEVPSALPR--NLEQLRLSQNLISRI 182
Cdd:COG4886 79 LLLLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLESLDLSGNQLTDLPEELANltNLKELDLSNNQLTDL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 183 PPgvfsklenlllldlqhnrlsdgvfkadTFQGLKNLMQLNLAHNILRKMPPKVPQ--AIHQLYLDSNKIETIPNGyFKD 260
Cdd:COG4886 152 PE---------------------------PLGNLTNLKSLDLSNNQLTDLPEELGNltNLKELDLSNNQITDLPEP-LGN 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 261 FPNLAFIRMNYNKLSDrgLPKNSFNISNLLVLHLSHNKISNVPAISN--KLEHLYLNNNSIEKIngtqicpnnlvafhdf 338
Cdd:COG4886 204 LTNLEELDLSGNQLTD--LPEPLANLTNLETLDLSNNQLTDLPELGNltNLEELDLSNNQLTDL---------------- 265
|
250 260
....*....|....*....|.
gi 229608920 339 sSDLENVPHLRYLRLDGNFLK 359
Cdd:COG4886 266 -PPLANLTNLKTLDLSNNQLT 285
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-354 |
1.58e-15 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 77.28 E-value: 1.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 83 LYCDSRNLRRVP-VIP--PRIHYLYLQNNFITELPlESFQNATGLRWVNLDNNRIRKVDQrVLGKLPSLAFLYMEKNQLE 159
Cdd:COG4886 141 LDLSNNQLTDLPePLGnlTNLKSLDLSNNQLTDLP-EELGNLTNLKELDLSNNQITDLPE-PLGNLTNLEELDLSGNQLT 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 160 EVPSALPR--NLEQLRLSQNLISRIPpgvfsklenlllldlqhnrlsdgvfkadTFQGLKNLMQLNLAHNILRKMPPKVP 237
Cdd:COG4886 219 DLPEPLANltNLETLDLSNNQLTDLP----------------------------ELGNLTNLEELDLSNNQLTDLPPLAN 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 238 -QAIHQLYLDSNKIETIP----NGYFKDFPNLAFIRMNYNKLSDRGLPKNSFNISNLLVLHLSHNKISNVPAISNKLEHL 312
Cdd:COG4886 271 lTNLKTLDLSNNQLTDLKlkelELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALL 350
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 229608920 313 YLNNNSIEKINGTQICPNNLVAFHDFSSDLENVPHLRYLRLD 354
Cdd:COG4886 351 TLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLL 392
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
168-359 |
2.69e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 70.73 E-value: 2.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 168 NLEQLRLSQNLISRIPPGVFSKLENLLLLDLQHNRLSDGVFKADTFQGLKNLMQLNLAHNI-----------------LR 230
Cdd:COG4886 47 LLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEelsnltnlesldlsgnqLT 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 231 KMPPKVPQ--AIHQLYLDSNKIETIPNGyFKDFPNLAFIRMNYNKLSDrgLPKNSFNISNLLVLHLSHNKISNVP-AISN 307
Cdd:COG4886 127 DLPEELANltNLKELDLSNNQLTDLPEP-LGNLTNLKSLDLSNNQLTD--LPEELGNLTNLKELDLSNNQITDLPePLGN 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 229608920 308 --KLEHLYLNNNSIEkingtqicpnnlvafhDFSSDLENVPHLRYLRLDGNFLK 359
Cdd:COG4886 204 ltNLEELDLSGNQLT----------------DLPEPLANLTNLETLDLSNNQLT 241
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
98-332 |
4.38e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 66.88 E-value: 4.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 98 PRIHYLYLQNNFITELPlESFQNATGLRWVNLDNNRIRKVDQrVLGKLPSLAFLYMEKNQLEEVP--SALPrNLEQLRLS 175
Cdd:COG4886 182 TNLKELDLSNNQITDLP-EPLGNLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTDLPelGNLT-NLEELDLS 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 176 QNLISRIPPgvFSKLENLLLLDLQHNRLSDGVFKADTFQGLKNLMQLNLAHNILRKMPPKVPQAIHQLYLDSNKIETIPN 255
Cdd:COG4886 259 NNQLTDLPP--LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVT 336
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 229608920 256 -GYFKDFPNLAFIRMNYNKLSDRGLPKNSFNISNLLVLHLSHNKISNVPAISNKLEHLYLNNNSIEKINGTQICPNNL 332
Cdd:COG4886 337 lTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAVNTE 414
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
129-349 |
7.55e-11 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 63.56 E-value: 7.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 129 LDNNRIRKVDQRVLGKLPSLaflYMEKNQLEEVPSALPRNLEQLRLSQNLISRIPPGVFSKLENLLLLdlqHNRLSdgvF 208
Cdd:PRK15370 206 LDNNELKSLPENLQGNIKTL---YANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLF---HNKIS---C 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 209 KADTFQglKNLMQLNLAHNILRKMPPKVPQAIHQLYLDSNKI----ETIPngyfkdfPNLAFIRMNYNKLSD--RGLPkn 282
Cdd:PRK15370 277 LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLtalpETLP-------PGLKTLEAGENALTSlpASLP-- 345
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 229608920 283 sfniSNLLVLHLSHNKISNVP-AISNKLEHLYLNNNSIEKIngtqicPNNLVA--------FHDFSSDLENVPHLR 349
Cdd:PRK15370 346 ----PELQVLDVSKNQITVLPeTLPPTITTLDVSRNALTNL------PENLPAalqimqasRNNLVRLPESLPHFR 411
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
99-356 |
2.60e-10 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 59.80 E-value: 2.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 99 RIHYLYLQNNFITELP-LESFQNATGLRwvnLDNNRIRKVDQrvLGKLPSLAFLYMEKNQLEEVP--SALpRNLEQLRLS 175
Cdd:cd21340 3 RITHLYLNDKNITKIDnLSLCKNLKVLY---LYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIEnlENL-VNLKKLYLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 176 QNLISRIppgvfsklenlllldlqhnrlsDGvfkadtFQGLKNLMQLNLAHNILrkmPPKvpqaiHQLYLDSNKIETIPN 255
Cdd:cd21340 77 GNRISVV----------------------EG------LENLTNLEELHIENQRL---PPG-----EKLTFDPRSLAALSN 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 256 gyfkdfpnlafirmnynklsdrglpknsfnisNLLVLHLSHNKISNVPAISN--KLEHLYLNNNSIEKingtqicpnnlv 333
Cdd:cd21340 121 --------------------------------SLRVLNISGNNIDSLEPLAPlrNLEQLDASNNQISD------------ 156
|
250 260
....*....|....*....|...
gi 229608920 334 aFHDFSSDLENVPHLRYLRLDGN 356
Cdd:cd21340 157 -LEELLDLLSSWPSLRELDLTGN 178
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
98-158 |
2.03e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 53.30 E-value: 2.03e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 229608920 98 PRIHYLYLQNNFITELPLESFQNATGLRWVNLDNNRIRKVDQRVLGKLPSLAFLYMEKNQL 158
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
86-297 |
1.30e-08 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 56.78 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 86 DSRNLRRVpvippRIHylylQNNFITELPlesfQNATGLRWVNL----DNNRIRKVDQRVLgKLPSLAFLYMEKNQ-LEE 160
Cdd:PLN00113 402 ACRSLRRV-----RLQ----DNSFSGELP----SEFTKLPLVYFldisNNNLQGRINSRKW-DMPSLQMLSLARNKfFGG 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 161 VP-SALPRNLEQLRLSQNLISRIPPGVFSKLENLLLLDLQHNRLSDGVfkADTFQGLKNLMQLNLAHNILRKmppkvpqa 239
Cdd:PLN00113 468 LPdSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI--PDELSSCKKLVSLDLSHNQLSG-------- 537
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 229608920 240 ihqlyldsnkieTIPNGyFKDFPNLAFIRMNYNKLSDRgLPKNSFNISNLLVLHLSHN 297
Cdd:PLN00113 538 ------------QIPAS-FSEMPVLSQLDLSQNQLSGE-IPKNLGNVESLVQVNISHN 581
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
99-367 |
1.55e-08 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 56.39 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 99 RIHYLYLQNNFIT-ELPLeSFQNATGLRWVNLDNNRIRKVDQRVLGKLPSLAFLYMEKNQLE-EVPSALPR--NLEQLRL 174
Cdd:PLN00113 165 SLKVLDLGGNVLVgKIPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSgEIPYEIGGltSLNHLDL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 175 S-QNLISRIPPGVFSKLENLLLLDLQhNRLSDGVFKadTFQGLKNLMQLNLAHNILRKMPPKVP---QAIHQLYLDSNKI 250
Cdd:PLN00113 244 VyNNLTGPIPSSLGNLKNLQYLFLYQ-NKLSGPIPP--SIFSLQKLISLDLSDNSLSGEIPELViqlQNLEILHLFSNNF 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 251 E-TIPNGyFKDFPNLAFIRMNYNKLSDrGLPKNSFNISNLLVLHLSHN----KISNVPAISNKLEHLYLNNNSIEkingT 325
Cdd:PLN00113 321 TgKIPVA-LTSLPRLQVLQLWSNKFSG-EIPKNLGKHNNLTVLDLSTNnltgEIPEGLCSSGNLFKLILFSNSLE----G 394
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 229608920 326 QICPnnlvafhdfssDLENVPHLRYLRLDGNFLKPPIPLDLM 367
Cdd:PLN00113 395 EIPK-----------SLGACRSLRRVRLQDNSFSGELPSEFT 425
|
|
| PRK15387 |
PRK15387 |
type III secretion system effector E3 ubiquitin transferase SspH2; |
75-346 |
3.34e-08 |
|
type III secretion system effector E3 ubiquitin transferase SspH2;
Pssm-ID: 185285 [Multi-domain] Cd Length: 788 Bit Score: 55.55 E-value: 3.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 75 CPPDFPSALYCDSRNLRRVPVIPPRIHYLYLQNNFITELPLEsfqnATGLRWVNLDNNRIRKvdqrvLGKLPS-LAFLYM 153
Cdd:PRK15387 219 CLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTH-----LPALPSgLCKLWI 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 154 EKNQLEEVPsALPRNLEQLRLSQNLISRIP--PGVFSKLENLLLLDLQHNRLSDGvfkadtfqglknLMQLNLAHNILRK 231
Cdd:PRK15387 290 FGNQLTSLP-VLPPGLQELSVSDNQLASLPalPSELCKLWAYNNQLTSLPTLPSG------------LQELSVSDNQLAS 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 232 MpPKVPQAIHQLYLDSNKIETIPngyfkdfpnlafirmnynklsdrGLPknsfniSNLLVLHLSHNKISNVPAISNKLEH 311
Cdd:PRK15387 357 L-PTLPSELYKLWAYNNRLTSLP-----------------------ALP------SGLKELIVSGNRLTSLPVLPSELKE 406
|
250 260 270
....*....|....*....|....*....|....*
gi 229608920 312 LYLNNNsieKINGTQICPNNLVAFHDFSSDLENVP 346
Cdd:PRK15387 407 LMVSGN---RLTSLPMLPSGLLSLSVYRNQLTRLP 438
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
76-220 |
7.47e-08 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 54.32 E-value: 7.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 76 PPDFPSAL-YCD--SRNLRRVPV-IPPRIHYLYLQNNFITELP---------LESFQNA---------TGLRWVNLDNNR 133
Cdd:PRK15370 278 PENLPEELrYLSvyDNSIRTLPAhLPSGITHLNVQSNSLTALPetlppglktLEAGENAltslpaslpPELQVLDVSKNQ 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 134 IRKVDQRVlgkLPSLAFLYMEKNQLEEVPSALPRNLEQLRLSQNLISRIP---PGVFSKLENLLLLDLQHNRLSDgvfka 210
Cdd:PRK15370 358 ITVLPETL---PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPeslPHFRGEGPQPTRIIVEYNPFSE----- 429
|
170
....*....|
gi 229608920 211 DTFQGLKNLM 220
Cdd:PRK15370 430 RTIQNMQRLM 439
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
240-370 |
5.19e-07 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 49.78 E-value: 5.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 240 IHQLYLDSNKIETIPNgyFKDFPNLAFIRMNYNKLSD-RGLPKNSfnisNLLVLHLSHNKISNVPAISN--KLEHLYLNN 316
Cdd:cd21340 4 ITHLYLNDKNITKIDN--LSLCKNLKVLYLYDNKITKiENLEFLT----NLTHLYLQNNQIEKIENLENlvNLKKLYLGG 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 229608920 317 NSIEKINGtqicpnnlvafhdfssdLENVPHLRYLRLDGNFLkppiPLDLMMCF 370
Cdd:cd21340 78 NRISVVEG-----------------LENLTNLEELHIENQRL----PPGEKLTF 110
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
98-366 |
5.54e-07 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 51.77 E-value: 5.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 98 PRIHYLYLQNNFIT-ELPLESFQNATGLRWVNLDNNRIRKVDQRvlGKLPSLAFLYMEKNQLE-EVPSALP--RNLEQLR 173
Cdd:PLN00113 93 PYIQTINLSNNQLSgPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSgEIPNDIGsfSSLKVLD 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 174 LSQN-LISRIPPGVfSKLENLLLLDLQHNRLSDGVfkADTFQGLKNLMQLNLAHNILR-KMPPKVPQAIHQLYLD---SN 248
Cdd:PLN00113 171 LGGNvLVGKIPNSL-TNLTSLEFLTLASNQLVGQI--PRELGQMKSLKWIYLGYNNLSgEIPYEIGGLTSLNHLDlvyNN 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 249 KIETIPNGyFKDFPNLAFIRMNYNKLSDRgLPKNSFNISNLLVLHLSHNKIS-NVPAISNKLEhlylnnnsiekingtqi 327
Cdd:PLN00113 248 LTGPIPSS-LGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNSLSgEIPELVIQLQ----------------- 308
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 229608920 328 cpnNLVAFHDFSSD--------LENVPHLRYLRLDGNFLKPPIPLDL 366
Cdd:PLN00113 309 ---NLEILHLFSNNftgkipvaLTSLPRLQVLQLWSNKFSGEIPKNL 352
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
98-229 |
1.08e-06 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 50.62 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 98 PRIHYLYL-QNNFITELPlESFqNATGLRWVNLDNNRIRKVDQRVLGKLPSLAFLYMEKNQLE-EVPSALP--RNLEQLR 173
Cdd:PLN00113 452 PSLQMLSLaRNKFFGGLP-DSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSgEIPDELSscKKLVSLD 529
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 229608920 174 LSQNLISRIPPGVFSKLENLLLLDLQHNRLSDGVFKadTFQGLKNLMQLNLAHNIL 229
Cdd:PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK--NLGNVESLVQVNISHNHL 583
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
98-359 |
2.14e-06 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 48.89 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 98 PRIHYLYLQNNFITEL---PLESFQNATGLRWVNLDNNRIRKvdqrvlGKLPSLAflymeknqleEVPSALPRNLEQLRL 174
Cdd:cd00116 81 CGLQELDLSDNALGPDgcgVLESLLRSSSLQELKLNNNGLGD------RGLRLLA----------KGLKDLPPALEKLVL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 175 SQNLISrippgvfsklenlllldlqhNRLSDGVfkADTFQGLKNLMQLNLAHNILRkmppkvPQAIHQLYLDsnkietip 254
Cdd:cd00116 145 GRNRLE--------------------GASCEAL--AKALRANRDLKELNLANNGIG------DAGIRALAEG-------- 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 255 ngyFKDFPNLAFIRMNYNKLSDRG-------LPKNSFnisnLLVLHLSHNKISNVPA---------ISNKLEHLYLNNNS 318
Cdd:cd00116 189 ---LKANCNLEVLDLNNNGLTDEGasalaetLASLKS----LEVLNLGDNNLTDAGAaalasallsPNISLLTLSLSCND 261
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 229608920 319 IEkingtqicpnnLVAFHDFSSDLENVPHLRYLRLDGNFLK 359
Cdd:cd00116 262 IT-----------DDGAKDLAEVLAEKESLLELDLRGNKFG 291
|
|
| LRRNT |
smart00013 |
Leucine rich repeat N-terminal domain; |
68-103 |
5.82e-06 |
|
Leucine rich repeat N-terminal domain;
Pssm-ID: 214470 [Multi-domain] Cd Length: 33 Bit Score: 42.69 E-value: 5.82e-06
10 20 30
....*....|....*....|....*....|....*.
gi 229608920 68 DCPRECYCPPdfpSALYCDSRNLRRVPVIPPRIHYL 103
Cdd:smart00013 1 ACPAPCNCSG---TAVDCSGRGLTEVPLDLPPDTTL 33
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
90-326 |
3.50e-05 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 46.02 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 90 LRRVPVIPPRIHYLYLQNNFITELPlesfqnaTGLRWVNLDN-----NRIRKVDQRV--LGKL-----PSLAFLYMEKNQ 157
Cdd:PLN03210 717 LKSFPDISTNISWLDLDETAIEEFP-------SNLRLENLDElilceMKSEKLWERVqpLTPLmtmlsPSLTRLFLSDIP 789
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 158 -LEEVPSALpRNLEQL-RLS----QNLISrIPPGVfsklenlllldlqhnrlsdgvfkadtfqGLKNLMQLNLAHNILRK 231
Cdd:PLN03210 790 sLVELPSSI-QNLHKLeHLEiencINLET-LPTGI----------------------------NLESLESLDLSGCSRLR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 232 MPPKVPQAIHQLYLDSNKIETIPnGYFKDFPNLAFIRMNynklSDRGLPKNSFNISNLlvLHLSHNKISNVPAISnkleH 311
Cdd:PLN03210 840 TFPDISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMN----GCNNLQRVSLNISKL--KHLETVDFSDCGALT----E 908
|
250
....*....|....*
gi 229608920 312 LYLNNNSIEKINGTQ 326
Cdd:PLN03210 909 ASWNGSPSEVAMATD 923
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
287-356 |
5.14e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 40.59 E-value: 5.14e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 229608920 287 SNLLVLHLSHNKISNVPAIS----NKLEHLYLNNNSIEKINGtqicpnnlVAFHDFssdlenvPHLRYLRLDGN 356
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAfkglSNLKVLDLSNNLLTTLSP--------GAFSGL-------PSLRYLDLSGN 59
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
243-299 |
6.07e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 40.59 E-value: 6.07e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 229608920 243 LYLDSNKIETIPNGYFKDFPNLAFIRMNYNKLSdrGLPKNSF-NISNLLVLHLSHNKI 299
Cdd:pfam13855 6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLT--TLSPGAFsGLPSLRYLDLSGNRL 61
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
96-373 |
1.52e-04 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 44.07 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 96 IPP------RIHYLYL-QNNFITELPLESFqNATGLRWVNLDNNRIRKVDQRVLGKLPSLAFLYMEKNQLE-EVP---SA 164
Cdd:PLN00113 252 IPSslgnlkNLQYLFLyQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTgKIPvalTS 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 165 LPRnLEQLRLSQNLISRIPPGVFSKLENLLLLDLQHNRLSDGVfkADTFQGLKNLMQLNLAHNILRKMPPK---VPQAIH 241
Cdd:PLN00113 331 LPR-LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI--PEGLCSSGNLFKLILFSNSLEGEIPKslgACRSLR 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 242 QLYLDSNKIE-TIPNGYFKdFPNLAFIRMNYNKLSDRgLPKNSFNISNLLVLHLSHNKIS-NVPAI--SNKLEHLYLNNN 317
Cdd:PLN00113 408 RVRLQDNSFSgELPSEFTK-LPLVYFLDISNNNLQGR-INSRKWDMPSLQMLSLARNKFFgGLPDSfgSKRLENLDLSRN 485
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 229608920 318 sieKINGTqiCPNNLVAFhdfssdlenvPHLRYLRLDGNFLKPPIPLDLMMCFRLL 373
Cdd:PLN00113 486 ---QFSGA--VPRKLGSL----------SELMQLKLSENKLSGEIPDELSSCKKLV 526
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
98-304 |
1.57e-04 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 43.68 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 98 PRIHYLYL-QNNFITELP--LESFQNATGLrwvNLDNNRIRkvdqrvlGKLP-------SLAFLYMEKNQLE-EVPSALP 166
Cdd:PLN00113 332 PRLQVLQLwSNKFSGEIPknLGKHNNLTVL---DLSTNNLT-------GEIPeglcssgNLFKLILFSNSLEgEIPKSLG 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 167 --RNLEQLRLSQNLISRIPPGVFSKLENLLLLDLQHNRLSDGVfkADTFQGLKNLMQLNLAHNilrKMPPKVPQA----- 239
Cdd:PLN00113 402 acRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKWDMPSLQMLSLARN---KFFGGLPDSfgskr 476
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 229608920 240 IHQLYLDSNKI-ETIPNGyFKDFPNLAFIRMNYNKLSDRgLPKNSFNISNLLVLHLSHNKIS-NVPA 304
Cdd:PLN00113 477 LENLDLSRNQFsGAVPRK-LGSLSELMQLKLSENKLSGE-IPDELSSCKKLVSLDLSHNQLSgQIPA 541
|
|
| LRRNT |
pfam01462 |
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ... |
68-98 |
1.13e-03 |
|
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.
Pssm-ID: 396168 [Multi-domain] Cd Length: 28 Bit Score: 36.07 E-value: 1.13e-03
10 20 30
....*....|....*....|....*....|.
gi 229608920 68 DCPRECYCPPdfpSALYCDSRNLRRVPVIPP 98
Cdd:pfam01462 1 ACPVPCHCSA---TVVNCSDRGLTAVPRDLP 28
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
288-324 |
1.15e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 36.45 E-value: 1.15e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 229608920 288 NLLVLHLSHNKISNVPAISN--KLEHLYL-NNNSIEKING 324
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKlpNLETLDLsGNNKITDLSD 41
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
96-319 |
1.16e-03 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 40.93 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 96 IPPRIHYLYLQNNFITELPLESF----QNATGLRWVNLDNNRIRkvDQRVLGKLPSLAF------LYMEKNQLEE----- 160
Cdd:COG5238 206 QNTTVTTLWLKRNPIGDEGAEILaealKGNKSLTTLDLSNNQIG--DEGVIALAEALKNnttvetLYLSGNQIGAegaia 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 161 VPSALPRN--LEQLRLSQNLIsrippgvfsklenlllldlqhnrlsdgvfkadTFQGLKNLMQlNLAHNilrkmppkvpQ 238
Cdd:COG5238 284 LAKALQGNttLTSLDLSVNRI--------------------------------GDEGAIALAE-GLQGN----------K 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229608920 239 AIHQLYLDSNKI---------ETIpngyfKDFPNLAFIRMNYNKLSDRG---LPKNSFNISNLLVLHLSHNKISNVPAIS 306
Cdd:COG5238 321 TLHTLNLAYNGIgaqgaialaKAL-----QENTTLHSLDLSDNQIGDEGaiaLAKYLEGNTTLRELNLGKNNIGKQGAEA 395
|
250 260
....*....|....*....|
gi 229608920 307 -------NKLEHLYLNNNSI 319
Cdd:COG5238 396 lidalqtNRLHTLILDGNLI 415
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
167-227 |
1.17e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 36.73 E-value: 1.17e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 229608920 167 RNLEQLRLSQNLISRIPPGVFSKLENLLLLDLQHNRLSdgVFKADTFQGLKNLMQLNLAHN 227
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLT--TLSPGAFSGLPSLRYLDLSGN 59
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
199-250 |
4.18e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 35.19 E-value: 4.18e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 229608920 199 QHNRLSdgVFKADTFQGLKNLMQLNLAHNILRKMPPKVPQAIHQ---LYLDSNKI 250
Cdd:pfam13855 9 SNNRLT--SLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSlryLDLSGNRL 61
|
|
|