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Conserved domains on  [gi|19527030|ref|NP_598570|]
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kynurenine 3-monooxygenase [Mus musculus]

Protein Classification

FAD-dependent oxidoreductase( domain architecture ID 11428987)

FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

CATH:  3.50.50.60
EC:  1.-.-.-
Gene Ontology:  GO:0071949|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 10-326 1.54e-38

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


:

Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 142.77  E-value: 1.54e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  10 RVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRvaksARGRSInlALSYRGRQALKAIGLEDQIVSKGVPMKARMIH- 88
Cdd:COG0654   5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPR----PDGRGI--ALSPRSLELLRRLGLWDRLLARGAPIRGIRVRd 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  89 SLSGKK-SAIPYG-NKSQYILSISRENLNKDLLTAVESyANAKVHFGHKLSKCIPEEGVLTVLGPDKvpRDVTCDLVVGC 166
Cdd:COG0654  79 GSDGRVlARFDAAeTGLPAGLVVPRADLERALLEAARA-LGVELRFGTEVTGLEQDADGVTVTLADG--RTLRADLVVGA 155

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030 167 DGAYSTVRAHLMKKPR-FDYTQQYIphgYMELTIppkngeyamepnclhiwprnaymmialpnmdksftctlfmpfeEFE 245
Cdd:COG0654 156 DGARSAVRRLLGIGFTgRDYPQRAL---WAGVRT-------------------------------------------ELR 189

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030 246 RLptrsdvldffqknFPDAIPLMGEqalMRDFFLLPAQPMISVKCSPFHlKSHCVLMGDAAHAIVPFFGQGMNAGFEDCL 325
Cdd:COG0654 190 AR-------------LAAAGPRLGE---LLELSPRSAFPLRRRRAERWR-RGRVVLLGDAAHTMHPLGGQGANLALRDAA 252


                .
gi 19527030 326 V 326
Cdd:COG0654 253 A 253
 
Name Accession Description Interval E-value
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 10-326 1.54e-38

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 142.77  E-value: 1.54e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  10 RVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRvaksARGRSInlALSYRGRQALKAIGLEDQIVSKGVPMKARMIH- 88
Cdd:COG0654   5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPR----PDGRGI--ALSPRSLELLRRLGLWDRLLARGAPIRGIRVRd 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  89 SLSGKK-SAIPYG-NKSQYILSISRENLNKDLLTAVESyANAKVHFGHKLSKCIPEEGVLTVLGPDKvpRDVTCDLVVGC 166
Cdd:COG0654  79 GSDGRVlARFDAAeTGLPAGLVVPRADLERALLEAARA-LGVELRFGTEVTGLEQDADGVTVTLADG--RTLRADLVVGA 155

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030 167 DGAYSTVRAHLMKKPR-FDYTQQYIphgYMELTIppkngeyamepnclhiwprnaymmialpnmdksftctlfmpfeEFE 245
Cdd:COG0654 156 DGARSAVRRLLGIGFTgRDYPQRAL---WAGVRT-------------------------------------------ELR 189

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030 246 RLptrsdvldffqknFPDAIPLMGEqalMRDFFLLPAQPMISVKCSPFHlKSHCVLMGDAAHAIVPFFGQGMNAGFEDCL 325
Cdd:COG0654 190 AR-------------LAAAGPRLGE---LLELSPRSAFPLRRRRAERWR-RGRVVLLGDAAHTMHPLGGQGANLALRDAA 252


                .
gi 19527030 326 V 326
Cdd:COG0654 253 A 253
Ubi-OHases TIGR01988
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a ...
 11-323 4.76e-17

Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]


Pssm-ID: 273913 [Multi-domain]  Cd Length: 385  Bit Score: 82.64  E-value: 4.76e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    11 VAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAKSAR-GRSInlALSYRGRQALKAIGLEDQIVskgvPMKARMIHS 89
Cdd:TIGR01988   2 IVIVGGGMVGLALALALARSGLKVALIEATPLPAPADPGFdNRVS--ALSAASIRLLEKLGVWDKIE----PARAQPIRD 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    90 L----SGKKSAIPYgNKSQYILS-----ISRENLNKDLLTAVESYANAKVHFGHKLSKCIPEEGVLTV-LGPDKVprdVT 159
Cdd:TIGR01988  76 IhvsdGGSFGALRF-DADEIGLEalgyvVENRVLQQALWERLQELPNVTLLCPARVVELPRHSDHVELtLDDGQQ---LR 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   160 CDLVVGCDGAYSTVRAHL-MKKPRFDYTQQYI--------PHGY--MELTIPpkNGEYAM----EPNCLHIW---PRNAY 221
Cdd:TIGR01988 152 ARLLVGADGANSKVRQLAgIPTTGWDYGQSAVvanvkherPHQGtaWERFTP--TGPLALlplpDNRSSLVWtlpPEEAE 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   222 MMIALPnmDKSFTCTLFMPFEEfeRLPTRSDVLDFFqknfpdAIPLMGEQAlmRDFFllpaqpmisvkcspfhlKSHCVL 301
Cdd:TIGR01988 230 RLLALS--DEEFLAELQRAFGS--RLGAITLVGERH------AFPLSLTHA--KRYV-----------------APRLAL 280

                         330       340
                  ....*....|....*....|..
gi 19527030   302 MGDAAHAIVPFFGQGMNAGFED 323
Cdd:TIGR01988 281 IGDAAHTIHPLAGQGLNLGLRD 302
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 11-323 1.37e-15

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 77.75  E-value: 1.37e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    11 VAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAKSARG---RSINLalsyrgrqaLKAIGLEDQIVSKGVPmKARMI 87
Cdd:pfam01494   4 VLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGlnqRTMEL---------LRQAGLEDRILAEGVP-HEGMG 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    88 HSLSGKKSAIPYGNKS--QYILSISRENLNKDLLTAVESyANAKVHFGHKLSKCIP-EEGVLTVL--GPDKVPRDVTCDL 162
Cdd:pfam01494  74 LAFYNTRRRADLDFLTspPRVTVYPQTELEPILVEHAEA-RGAQVRFGTEVLSLEQdGDGVTAVVrdRRDGEEYTVRAKY 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   163 VVGCDGAYSTVRAHLmkkpRFDYT-QQYIPHGYMELTIPPKNGEYAMEPNCLHIWPRNA----YMMIALPNMDKS---FT 234
Cdd:pfam01494 153 LVGCDGGRSPVRKTL----GIEFEgFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPhsrgFMVGPWRSAGREryyVQ 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   235 CTLFMPFEEFERLPTRSDVldffqknFPDAIPLMGEQALMRDFFLLPAQPMISVKCSPFHlKSHCVLMGDAAHAIVPFFG 314
Cdd:pfam01494 229 VPWDEEVEERPEEFTDEEL-------KQRLRSIVGIDLALVEILWKSIWGVASRVATRYR-KGRVFLAGDAAHIHPPTGG 300


                  ....*....
gi 19527030   315 QGMNAGFED 323
Cdd:pfam01494 301 QGLNTAIQD 309
PRK06847 PRK06847
hypothetical protein; Provisional
 9-351 4.98e-14

hypothetical protein; Provisional


Pssm-ID: 235874 [Multi-domain]  Cd Length: 375  Bit Score: 73.37  E-value: 4.98e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    9 KRVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVaksaRGRSINL---ALsyrgrQALKAIGLEDQIVSKGVPMKAR 85
Cdd:PRK06847   5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV----YGAGITLqgnAL-----RALRELGVLDECLEAGFGFDGV 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   86 MIHSLSGKKSA-----------IPYGNksqyilSISRENLNKDLLTAVESyANAKVHFGHKLSKCIP-EEGVltvlgpdk 153
Cdd:PRK06847  76 DLFDPDGTLLAelptprlagddLPGGG------GIMRPALARILADAARA-AGADVRLGTTVTAIEQdDDGV-------- 140

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  154 vprDVTC--------DLVVGCDGAYSTVRAHLM---KKPRfdYTQQYIPHGYMELtiPPkngeyamEPNCLHIW------ 216
Cdd:PRK06847 141 ---TVTFsdgttgryDLVVGADGLYSKVRSLVFpdePEPE--YTGQGVWRAVLPR--PA-------EVDRSLMYlgpttk 206

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  217 -------PRNAYMMIALPNMDKSFtctlfmpFEEFERLPTRSDVLDFFQKNFPDAI-PLMGEQA--LMRDF--FLLPAqp 284
Cdd:PRK06847 207 agvvplsEDLMYLFVTEPRPDNPR-------IEPDTLAALLRELLAPFGGPVLQELrEQITDDAqvVYRPLetLLVPA-- 277

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19527030  285 misvkcsPFHlKSHCVLMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKfNNNLSMCLPEFSRFRIP 351
Cdd:PRK06847 278 -------PWH-RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR-HDSLEAALQAYYARRWE 335
 
Name Accession Description Interval E-value
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 10-326 1.54e-38

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 142.77  E-value: 1.54e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  10 RVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRvaksARGRSInlALSYRGRQALKAIGLEDQIVSKGVPMKARMIH- 88
Cdd:COG0654   5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPR----PDGRGI--ALSPRSLELLRRLGLWDRLLARGAPIRGIRVRd 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  89 SLSGKK-SAIPYG-NKSQYILSISRENLNKDLLTAVESyANAKVHFGHKLSKCIPEEGVLTVLGPDKvpRDVTCDLVVGC 166
Cdd:COG0654  79 GSDGRVlARFDAAeTGLPAGLVVPRADLERALLEAARA-LGVELRFGTEVTGLEQDADGVTVTLADG--RTLRADLVVGA 155

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030 167 DGAYSTVRAHLMKKPR-FDYTQQYIphgYMELTIppkngeyamepnclhiwprnaymmialpnmdksftctlfmpfeEFE 245
Cdd:COG0654 156 DGARSAVRRLLGIGFTgRDYPQRAL---WAGVRT-------------------------------------------ELR 189

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030 246 RLptrsdvldffqknFPDAIPLMGEqalMRDFFLLPAQPMISVKCSPFHlKSHCVLMGDAAHAIVPFFGQGMNAGFEDCL 325
Cdd:COG0654 190 AR-------------LAAAGPRLGE---LLELSPRSAFPLRRRRAERWR-RGRVVLLGDAAHTMHPLGGQGANLALRDAA 252


                .
gi 19527030 326 V 326
Cdd:COG0654 253 A 253
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
16-216 4.55e-19

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 86.95  E-value: 4.55e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  16 GGLVGALNACFLAKRNFQVDVYEAREDIRvAKSARGrsinlALSYRGRQALKAIGLEDQIVSkgvPMKARMIHSLSGKKS 95
Cdd:COG0644   1 AGPAGSAAARRLARAGLSVLLLEKGSFPG-DKICGG-----GLLPRALEELEPLGLDEPLER---PVRGARFYSPGGKSV 71

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  96 AIPYGNKSQYIlsISRENLNKDLLTAVESyANAKVHFGHKLSKCIPEEGVLTVLGPDkvPRDVTCDLVVGCDGAYSTVRA 175
Cdd:COG0644  72 ELPPGRGGGYV--VDRARFDRWLAEQAEE-AGAEVRTGTRVTDVLRDDGRVVVRTGD--GEEIRADYVVDADGARSLLAR 146

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 19527030 176 HLMKKPRFDYTQQYIpHGYMELTIPPKNGEYamEPNCLHIW 216
Cdd:COG0644 147 KLGLKRRSDEPQDYA-LAIKEHWELPPLEGV--DPGAVEFF 184
Ubi-OHases TIGR01988
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a ...
 11-323 4.76e-17

Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]


Pssm-ID: 273913 [Multi-domain]  Cd Length: 385  Bit Score: 82.64  E-value: 4.76e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    11 VAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAKSAR-GRSInlALSYRGRQALKAIGLEDQIVskgvPMKARMIHS 89
Cdd:TIGR01988   2 IVIVGGGMVGLALALALARSGLKVALIEATPLPAPADPGFdNRVS--ALSAASIRLLEKLGVWDKIE----PARAQPIRD 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    90 L----SGKKSAIPYgNKSQYILS-----ISRENLNKDLLTAVESYANAKVHFGHKLSKCIPEEGVLTV-LGPDKVprdVT 159
Cdd:TIGR01988  76 IhvsdGGSFGALRF-DADEIGLEalgyvVENRVLQQALWERLQELPNVTLLCPARVVELPRHSDHVELtLDDGQQ---LR 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   160 CDLVVGCDGAYSTVRAHL-MKKPRFDYTQQYI--------PHGY--MELTIPpkNGEYAM----EPNCLHIW---PRNAY 221
Cdd:TIGR01988 152 ARLLVGADGANSKVRQLAgIPTTGWDYGQSAVvanvkherPHQGtaWERFTP--TGPLALlplpDNRSSLVWtlpPEEAE 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   222 MMIALPnmDKSFTCTLFMPFEEfeRLPTRSDVLDFFqknfpdAIPLMGEQAlmRDFFllpaqpmisvkcspfhlKSHCVL 301
Cdd:TIGR01988 230 RLLALS--DEEFLAELQRAFGS--RLGAITLVGERH------AFPLSLTHA--KRYV-----------------APRLAL 280

                         330       340
                  ....*....|....*....|..
gi 19527030   302 MGDAAHAIVPFFGQGMNAGFED 323
Cdd:TIGR01988 281 IGDAAHTIHPLAGQGLNLGLRD 302
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 11-323 1.37e-15

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 77.75  E-value: 1.37e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    11 VAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAKSARG---RSINLalsyrgrqaLKAIGLEDQIVSKGVPmKARMI 87
Cdd:pfam01494   4 VLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGlnqRTMEL---------LRQAGLEDRILAEGVP-HEGMG 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    88 HSLSGKKSAIPYGNKS--QYILSISRENLNKDLLTAVESyANAKVHFGHKLSKCIP-EEGVLTVL--GPDKVPRDVTCDL 162
Cdd:pfam01494  74 LAFYNTRRRADLDFLTspPRVTVYPQTELEPILVEHAEA-RGAQVRFGTEVLSLEQdGDGVTAVVrdRRDGEEYTVRAKY 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   163 VVGCDGAYSTVRAHLmkkpRFDYT-QQYIPHGYMELTIPPKNGEYAMEPNCLHIWPRNA----YMMIALPNMDKS---FT 234
Cdd:pfam01494 153 LVGCDGGRSPVRKTL----GIEFEgFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPhsrgFMVGPWRSAGREryyVQ 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   235 CTLFMPFEEFERLPTRSDVldffqknFPDAIPLMGEQALMRDFFLLPAQPMISVKCSPFHlKSHCVLMGDAAHAIVPFFG 314
Cdd:pfam01494 229 VPWDEEVEERPEEFTDEEL-------KQRLRSIVGIDLALVEILWKSIWGVASRVATRYR-KGRVFLAGDAAHIHPPTGG 300


                  ....*....
gi 19527030   315 QGMNAGFED 323
Cdd:pfam01494 301 QGLNTAIQD 309
PRK06847 PRK06847
hypothetical protein; Provisional
 9-351 4.98e-14

hypothetical protein; Provisional


Pssm-ID: 235874 [Multi-domain]  Cd Length: 375  Bit Score: 73.37  E-value: 4.98e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    9 KRVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVaksaRGRSINL---ALsyrgrQALKAIGLEDQIVSKGVPMKAR 85
Cdd:PRK06847   5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV----YGAGITLqgnAL-----RALRELGVLDECLEAGFGFDGV 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   86 MIHSLSGKKSA-----------IPYGNksqyilSISRENLNKDLLTAVESyANAKVHFGHKLSKCIP-EEGVltvlgpdk 153
Cdd:PRK06847  76 DLFDPDGTLLAelptprlagddLPGGG------GIMRPALARILADAARA-AGADVRLGTTVTAIEQdDDGV-------- 140

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  154 vprDVTC--------DLVVGCDGAYSTVRAHLM---KKPRfdYTQQYIPHGYMELtiPPkngeyamEPNCLHIW------ 216
Cdd:PRK06847 141 ---TVTFsdgttgryDLVVGADGLYSKVRSLVFpdePEPE--YTGQGVWRAVLPR--PA-------EVDRSLMYlgpttk 206

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  217 -------PRNAYMMIALPNMDKSFtctlfmpFEEFERLPTRSDVLDFFQKNFPDAI-PLMGEQA--LMRDF--FLLPAqp 284
Cdd:PRK06847 207 agvvplsEDLMYLFVTEPRPDNPR-------IEPDTLAALLRELLAPFGGPVLQELrEQITDDAqvVYRPLetLLVPA-- 277

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19527030  285 misvkcsPFHlKSHCVLMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKfNNNLSMCLPEFSRFRIP 351
Cdd:PRK06847 278 -------PWH-RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR-HDSLEAALQAYYARRWE 335
mhpA PRK06183
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
11-323 1.63e-13

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;


Pssm-ID: 235727 [Multi-domain]  Cd Length: 500  Bit Score: 72.63  E-value: 1.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   11 VAVIGGGLVGALNACFLAKRNFQVDVYEAREDI----R-VA---KSARgrsinlalsyrgrqALKAIGLEDQIVSKGVPM 82
Cdd:PRK06183  13 VVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLydlpRaVGiddEALR--------------VLQAIGLADEVLPHTTPN 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   83 ------KARM-----IHSLSGKKSAIPYGNksqyilSISRENLNKDLLTAVESYANAKVHFGHKLSKCIP-EEGV-LTVL 149
Cdd:PRK06183  79 hgmrflDAKGrclaeIARPSTGEFGWPRRN------AFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQdDDGVtVTLT 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  150 GPDKVPRDVTCDLVVGCDGAYSTVRaHLMKKPRFDYTQqyiPHGYMELTIPPKNGEYAMEPNCLHIWPRNAYMMIALPNM 229
Cdd:PRK06183 153 DADGQRETVRARYVVGCDGANSFVR-RTLGVPFEDLTF---PERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHG 228

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  230 DKSFtctlfmpfeEFERLP--TRSDVLDffqknfPDAIplmgeQALMRDFFLLPAQP-MISVKCSPFHL-------KSHC 299
Cdd:PRK06183 229 RRRW---------EFMLLPgeTEEQLAS------PENV-----WRLLAPWGPTPDDAeLIRHAVYTFHArvadrwrSGRV 288

                        330       340
                 ....*....|....*....|....
gi 19527030  300 VLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK06183 289 LLAGDAAHLMPPFAGQGMNSGIRD 312
PRK07538 PRK07538
hypothetical protein; Provisional
 10-177 6.64e-12

hypothetical protein; Provisional


Pssm-ID: 236046 [Multi-domain]  Cd Length: 413  Bit Score: 67.23  E-value: 6.64e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   10 RVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRvaksARGRSINLaLSYRGRQaLKAIGLEDQIVSKGVPMKARMIHS 89
Cdd:PRK07538   2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR----PLGVGINL-LPHAVRE-LAELGLLDALDAIGIRTRELAYFN 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   90 LSGKKsaI---PYGNKSQYI---LSISRENLNKDLLTAV-ESYANAKVHFGHKLSKCIP-EEGVLTVLGP--DKVPRDVT 159
Cdd:PRK07538  76 RHGQR--IwsePRGLAAGYDwpqYSIHRGELQMLLLDAVrERLGPDAVRTGHRVVGFEQdADVTVVFLGDraGGDLVSVR 153

                        170
                 ....*....|....*...
gi 19527030  160 CDLVVGCDGAYSTVRAHL 177
Cdd:PRK07538 154 GDVLIGADGIHSAVRAQL 171
PRK06753 PRK06753
hypothetical protein; Provisional
 10-351 5.89e-11

hypothetical protein; Provisional


Pssm-ID: 168661 [Multi-domain]  Cd Length: 373  Bit Score: 63.94  E-value: 5.89e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   10 RVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAKSARGRSINLAlsyrgrQALKAIGLEDQIVSKGVPMKARMIHS 89
Cdd:PRK06753   2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVI------KKLGNHDLAKGIKNAGQILSTMNLLD 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   90 LSGK---KSAIPYGNKSqyiLSISRENLNKDLLTAVESyanAKVHFGHKLSKCIPEEGVLTVLGPDKVPRDVtcDLVVGC 166
Cdd:PRK06753  76 DKGTllnKVKLKSNTLN---VTLHRQTLIDIIKSYVKE---DAIFTGKEVTKIENETDKVTIHFADGESEAF--DLCIGA 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  167 DGAYSTVRAHLMKKPRFDYtQQYIPHGYMELTIPPKNGEYAMEpnclhIWPRNAYMMIA-LPNMDKSFtctlFMPFEEFE 245
Cdd:PRK06753 148 DGIHSKVRQSVNADSKVRY-QGYTCFRGLIDDIDLKLPDCAKE-----YWGTKGRFGIVpLLNNQAYW----FITINAKE 217

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  246 RLP-----TRSDVLDFFqKNFPDAIPLMGEQA-----LMRDFFLLpaQPMISvkcspfHLKSHCVLMGDAAHAIVPFFGQ 315
Cdd:PRK06753 218 RDPkyssfGKPHLQAYF-NHYPNEVREILDKQsetgiLHHDIYDL--KPLKS------FVYGRIVLLGDAAHATTPNMGQ 288

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 19527030  316 GMNAGFEDCLVfdeLMDKFNN-NLSMCLPEFSRFRIP 351
Cdd:PRK06753 289 GAGQAMEDAIV---LANCLNAyDFEKALQRYDKIRVK 322
PRK07364 PRK07364
FAD-dependent hydroxylase;
11-323 2.31e-10

FAD-dependent hydroxylase;


Pssm-ID: 236001 [Multi-domain]  Cd Length: 415  Bit Score: 62.34  E-value: 2.31e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   11 VAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAksARGRSinLALSYRGRQALKAIGLEDQIV-------------- 76
Cdd:PRK07364  21 VAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAA--AKGQA--YALSLLSARIFEGIGVWEKILpqigkfrqirlsda 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   77 --SKGVPMKARMIHSLsgkksAIPYGNKSQYILSIsrenlnkdLLTAVESYAN------AKVhfghkLSKCIPEEGVLTV 148
Cdd:PRK07364  97 dyPGVVKFQPTDLGTE-----ALGYVGEHQVLLEA--------LQEFLQSCPNitwlcpAEV-----VSVEYQQDAATVT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  149 LGPDKVPRDVTCDLVVGCDGAYSTVRAHLMKKPR-FDYTQQYI--------PHGYMeltippkngeyAMEpnclHIWPRN 219
Cdd:PRK07364 159 LEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKgWKYWQSCVtatvkheaPHNDI-----------AYE----RFWPSG 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  220 AYMMIALPNMDKSFTCTlfMPFEEFERLPT--RSDVLDFFQKNFPDaipLMGEQALMRDFFLLPAQPMISVKcspfHLKS 297
Cdd:PRK07364 224 PFAILPLPGNRCQIVWT--APHAQAKALLAlpEAEFLAELQQRYGD---QLGKLELLGDRFLFPVQLMQSDR----YVQH 294

                        330       340
                 ....*....|....*....|....*.
gi 19527030  298 HCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK07364 295 RLALVGDAAHCCHPVGGQGLNLGIRD 320
PRK07045 PRK07045
putative monooxygenase; Reviewed
 11-356 3.72e-10

putative monooxygenase; Reviewed


Pssm-ID: 136171 [Multi-domain]  Cd Length: 388  Bit Score: 61.46  E-value: 3.72e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   11 VAVIGGGLVGALNACFLAKRNFQVDVYEaredirvaKSARGRSINLA--LSYRGRQALKAIGLEDQIVSKGVPMKARMih 88
Cdd:PRK07045   8 VLINGSGIAGVALAHLLGARGHSVTVVE--------RAARNRAQNGAdlLKPSGIGVVRAMGLLDDVFAAGGLRRDAM-- 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   89 SLSGKKSAIPYGNKSQ-----YILSISRENLNKDLLTAVESYANAKVHFGHKLSKCIPEE-GVLTVL----GPDKVPRdv 158
Cdd:PRK07045  78 RLYHDKELIASLDYRSasalgYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDAdGTVTSVtlsdGERVAPT-- 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  159 tcdLVVGCDGAYSTVRAHLMKKPrfdytQQYIPHgymelTIPPKNGEYAMEP-----NCLHIwPRNAYMMIALPNMDKSF 233
Cdd:PRK07045 156 ---VLVGADGARSMIRDDVLRMP-----AERVPY-----ATPMAFGTIALTDsvrecNRLYV-DSNQGLAYFYPIGDQAT 221

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  234 TCTLFMPFEEFERL---PTRSDVL----DFFQKNFPDAIPLMGEQALmrdfflLPAQPMISVKCSPFHlKSHCVLMGDAA 306
Cdd:PRK07045 222 RLVVSFPADEMQGYladTTRTKLLarlnEFVGDESADAMAAIGAGTA------FPLIPLGRMNLDRYH-KRNVVLLGDAA 294

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 19527030  307 HAIVPFFGQGMNAGFEDCLVFDELMDKFNNN---LSMCLPEFSRFRIPDDHAI 356
Cdd:PRK07045 295 HSIHPITGQGMNLAIEDAGELGACLDLHLSGqiaLADALERFERIRRPVNEAV 347
PRK06185 PRK06185
FAD-dependent oxidoreductase;
5-318 7.99e-10

FAD-dependent oxidoreductase;


Pssm-ID: 235729 [Multi-domain]  Cd Length: 407  Bit Score: 60.64  E-value: 7.99e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    5 DTQGKRVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIrvAKSARGRSIN-LALsyrgrQALKAIGLEDQIVskGVP-M 82
Cdd:PRK06185   3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADF--LRDFRGDTVHpSTL-----ELMDELGLLERFL--ELPhQ 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   83 KARMIHSLSGKK-------SAIPYGNKsqYILSISRenlnKDLLTAV----ESYANAKVHFGHKLSKCIPEEGV---LTV 148
Cdd:PRK06185  74 KVRTLRFEIGGRtvtladfSRLPTPYP--YIAMMPQ----WDFLDFLaeeaSAYPNFTLRMGAEVTGLIEEGGRvtgVRA 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  149 LGPDKvPRDVTCDLVVGCDGAYSTVRAhlmkKPRFDYTQQYIPH--GYMELTIPPKNGEYAMEpnclHIWPRNayMMIAL 226
Cdd:PRK06185 148 RTPDG-PGEIRADLVVGADGRHSRVRA----LAGLEVREFGAPMdvLWFRLPREPDDPESLMG----RFGPGQ--GLIMI 216

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  227 PNMDKsFTCTLFMPFEEFERLptRSDVLDFFQKNFPDAIPLMGEQAL----MRDFFLLpaqpmiSVKCSpfHLKS-HC-- 299
Cdd:PRK06185 217 DRGDY-WQCGYVIPKGGYAAL--RAAGLEAFRERVAELAPELADRVAelksWDDVKLL------DVRVD--RLRRwHRpg 285

                        330       340
                 ....*....|....*....|
gi 19527030  300 -VLMGDAAHAIVPFFGQGMN 318
Cdd:PRK06185 286 lLCIGDAAHAMSPVGGVGIN 305
COQ6 TIGR01989
ubiquinone biosynthesis monooxygenase COQ6; This model represents the monooxygenase ...
 11-323 3.29e-09

ubiquinone biosynthesis monooxygenase COQ6; This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone


Pssm-ID: 273914 [Multi-domain]  Cd Length: 437  Bit Score: 58.61  E-value: 3.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    11 VAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAKSARGRSIN----------LALSYRGRQALKAIGLEDQIVSKGV 80
Cdd:TIGR01989   3 VVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEkpdgpysnrvSSITPASISFFKKIGAWDHIQSDRI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    81 PMKARMIHSLSGKKSAIPY--GNKSQYILSISrENLN--KDLLTAVESY--ANAKVHFGHKLSKC-IPEEGVLTVLGPDK 153
Cdd:TIGR01989  83 QPFGRMQVWDGCSLALIRFdrDNGKEDMACII-ENDNiqNSLYNRLQEYngDNVKILNPARLISVtIPSKYPNDNSNWVH 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   154 VP----RDVTCDLVVGCDGAYSTVR-AHLMKKPRFDYTQQYIPhGYMELTIPPKN----------GEYAMEP----NCLH 214
Cdd:TIGR01989 162 ITlsdgQVLYTKLLIGADGSNSNVRkAANIDTTGWNYNQHAVV-ATLKLEEATENdvawqrflptGPIALLPlpdnNSTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   215 IW---PRNAYMMIALPNmdksftctlfmpfEEFERLPTRSDVLDFFQKNFpdaIPLMGE--QALMRDFFLLPAQPMISVK 289
Cdd:TIGR01989 241 VWstsPEEALRLLSLPP-------------EDFVDALNAAFDLGYSDHPY---SYLLDYamEKLNEDIGFRTEGSKSCFQ 304

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 19527030   290 CSP------------FHLK---SH------CVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:TIGR01989 305 VPPrvigvvdksraaFPLGlghADeyvtkrVALVGDAAHRVHPLAGQGVNLGFGD 359
PRK08849 PRK08849
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
 11-353 9.37e-09

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional


Pssm-ID: 181564 [Multi-domain]  Cd Length: 384  Bit Score: 57.09  E-value: 9.37e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   11 VAVIGGGLVGALNACFLAKRNFQVDVYEARE----------DIRVAksargrsinlALSYRGRQALKAIGLEDQIVSKGV 80
Cdd:PRK08849   6 IAVVGGGMVGAATALGFAKQGRSVAVIEGGEpkafepsqpmDIRVS----------AISQTSVDLLESLGAWSSIVAMRV 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   81 PMKARM-----------IHSLSGKKSAIPYGNKSQYI-LSISRENLNKDLLTAVESYANAKVHFGHKLSKCIPEEGvltv 148
Cdd:PRK08849  76 CPYKRLetwehpecrtrFHSDELNLDQLGYIVENRLIqLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESG---- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  149 lgpdkvpRDVTCDLVVGCDGAYSTVR-------------AHLM------KKPRFDYT-QQYIPHGymeltipPKngeyAM 208
Cdd:PRK08849 152 -------AEIEAKWVIGADGANSQVRqlagigitawdyrQHCMlinvetEQPQQDITwQQFTPSG-------PR----SF 213

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  209 EPNCLH----IWPRNAYMMIALPNMDKsftctlfmpfeefERLptRSDVLDFFQKNFPDAIPL-MGEQALMRDFfllpAQ 283
Cdd:PRK08849 214 LPLCGNqgslVWYDSPKRIKQLSAMNP-------------EQL--RSEILRHFPAELGEIKVLqHGSFPLTRRH----AQ 274

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  284 PmisvkcspfHLKSHCVLMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKFNNNLSMCLPEFSRFRIPDD 353
Cdd:PRK08849 275 Q---------YVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDASFARYERRRRPDN 335
PRK06126 PRK06126
hypothetical protein; Provisional
 1-323 7.07e-08

hypothetical protein; Provisional


Pssm-ID: 235704 [Multi-domain]  Cd Length: 545  Bit Score: 55.00  E-value: 7.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    1 MASSDTQgkrVAVIGGGLVGALNACFLAKRNFQVDVYEAREdiRVAKSARGRsinlALSYRGRQALKAIGLEDQIVSKGV 80
Cdd:PRK06126   3 ENTSETP---VLIVGGGPVGLALALDLGRRGVDSILVERKD--GTAFNPKAN----TTSARSMEHFRRLGIADEVRSAGL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   81 PM---------------------------KARMIHSLSGKKSAipygnkSQYILSISRENLNKDLLTAVESYANAKVHFG 133
Cdd:PRK06126  74 PVdyptdiayftrltgyelarfrlpsareAITPVGGPDGSWPS------PELPHRIPQKYLEPILLEHAAAQPGVTLRYG 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  134 HKLSKCIP-EEGVLTVLGP--DKVPRDVTCDLVVGCDGAYSTVRAHL-----------------MKKPRFdytQQYIPH- 192
Cdd:PRK06126 148 HRLTDFEQdADGVTATVEDldGGESLTIRADYLVGCDGARSAVRRSLgisyegtsglqrdlsiyIRAPGL---AALVGHd 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  193 -GYMELTIPPKngeyamepnclhiwpRNAyMMIALPNMDKSFTCTLfmPFEEFERLPTRSDVLDFFQKnfpdaipLMGEQ 271
Cdd:PRK06126 225 pAWMYWLFNPD---------------RRG-VLVAIDGRDEWLFHQL--RGGEDEFTIDDVDARAFVRR-------GVGED 279

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 19527030  272 AlmrDFFLLPAQPMISVK-CSPFHLKSHCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK06126 280 I---DYEVLSVVPWTGRRlVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGD 329
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
 3-57 4.37e-06

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 49.07  E-value: 4.37e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 19527030    3 SSDTQGKRVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIrvaksARGRSINLA 57
Cdd:PRK01747 255 PGSPKARDAAIIGGGIAGAALALALARRGWQVTLYEADEAP-----AQGASGNRQ 304
PRK08163 PRK08163
3-hydroxybenzoate 6-monooxygenase;
6-182 6.01e-06

3-hydroxybenzoate 6-monooxygenase;


Pssm-ID: 181262 [Multi-domain]  Cd Length: 396  Bit Score: 48.49  E-value: 6.01e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    6 TQGKRVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAksarGRSINLALSyrGRQALKAIGLEDQIVSKGV-PMKA 84
Cdd:PRK08163   2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEI----GAGIQLGPN--AFSALDALGVGEAARQRAVfTDHL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   85 RMIHSLSGKKSA-IP--------YGNKsqYILsISRENLNKDLLTAVESYANAKVHFGHKLSKCIPEEGVLTVLgpDKVP 155
Cdd:PRK08163  76 TMMDAVDAEEVVrIPtgqafrarFGNP--YAV-IHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVF--DQQG 150

                        170       180
                 ....*....|....*....|....*...
gi 19527030  156 RDVTCDLVVGCDGAYSTVRAHLM-KKPR 182
Cdd:PRK08163 151 NRWTGDALIGCDGVKSVVRQSLVgDAPR 178
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
13-43 9.57e-06

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 43.29  E-value: 9.57e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 19527030    13 VIGGGLVGALNACFLAKRNFQVDVYEAREDI 43
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRL 31
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 10-72 1.82e-05

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 46.62  E-value: 1.82e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19527030    10 RVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIrvAKSARGRS---INLALSYRGRQALKAIGLE 72
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDP--GSGASGRNaglIHPGLRYLEPSELARLALE 64
PRK08244 PRK08244
monooxygenase;
11-323 3.87e-05

monooxygenase;


Pssm-ID: 236199 [Multi-domain]  Cd Length: 493  Bit Score: 45.89  E-value: 3.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   11 VAVIGGGLVGALNACFLAKRNFQVDVYEarediRVAKSARgRSINLALSYRGRQALKAIGLEDQIVSKGVPMKARMIHSL 90
Cdd:PRK08244   5 VIIIGGGPVGLMLASELALAGVKTCVIE-----RLKETVP-YSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   91 SGKKSAIPYGNKSQYILSISRENLNKDLltavESYAN---AKVHFGHK-LSKCIPEEGVLTVL-GPDKVpRDVTCDLVVG 165
Cdd:PRK08244  79 DTRLDFSALDTSSNYTLFLPQAETEKVL----EEHARslgVEIFRGAEvLAVRQDGDGVEVVVrGPDGL-RTLTSSYVVG 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  166 CDGAYSTVRAHlmKKPRFDYTQQYIPH--GYMELTIPPKNGEYAM--EPNCLHIWPRNAYM----MIAL--PNMDKSFTC 235
Cdd:PRK08244 154 ADGAGSIVRKQ--AGIAFPGTDATFTAmlGDVVLKDPPPSSVLSLctREGGVMIVPLSGGIyrvlIIDPerPQVPKDEPV 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  236 TLfmpfEEFERLPTRSDVLDF------FQKNFPDAIPLMGEQALMRDFfllpaqpmisvkcspfhlkshcvLMGDAAHAI 309
Cdd:PRK08244 232 TL----EELKTSLIRICGTDFglndpvWMSRFGNATRQAERYRSGRIF-----------------------LAGDAAHIH 284

                        330
                 ....*....|....
gi 19527030  310 VPFFGQGMNAGFED 323
Cdd:PRK08244 285 FPAGGQGLNVGLQD 298
PRK05732 PRK05732
2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
 11-187 7.28e-05

2-octaprenyl-6-methoxyphenyl hydroxylase; Validated


Pssm-ID: 235584 [Multi-domain]  Cd Length: 395  Bit Score: 44.84  E-value: 7.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   11 VAVIGGGLVGALNACF---LAKRNFQVDVYEARE-DIRVAKSARGRSInlALSYRGRQALKAIGLEDQIVSKGVPMkaRM 86
Cdd:PRK05732   6 VIIVGGGMAGATLALAlsrLSHGGLPVALIEAFApESDAHPGFDARAI--ALAAGTCQQLARLGVWQALADCATPI--TH 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   87 IH-SLSGKKSAIpygnksqyilSISRENLNKDLLTAVESYAnakvHFGHKLSKCIPEEGVLTVLGPDKV----PRD---- 157
Cdd:PRK05732  82 IHvSDRGHAGFV----------RLDAEDYGVPALGYVVELH----DVGQRLFALLDKAPGVTLHCPARVanveRTQgsvr 147

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 19527030  158 --------VTCDLVVGCDGAYSTVRAHL-MKKPRFDYTQ 187
Cdd:PRK05732 148 vtlddgetLTGRLLVAADGSHSALREALgIDWQQHPYEQ 186
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 8-40 8.66e-05

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 44.85  E-value: 8.66e-05
                        10        20        30
                ....*....|....*....|....*....|....*
gi 19527030   8 GKRVAVIGGGLVG--AlnACFLAKRNFQVDVYEAR 40
Cdd:COG3349   3 PPRVVVVGGGLAGlaA--AVELAEAGFRVTLLEAR 35
PRK07608 PRK07608
UbiH/UbiF family hydroxylase;
296-323 9.12e-05

UbiH/UbiF family hydroxylase;


Pssm-ID: 181057 [Multi-domain]  Cd Length: 388  Bit Score: 44.56  E-value: 9.12e-05
                         10        20
                 ....*....|....*....|....*...
gi 19527030  296 KSHCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK07608 279 APRVALVGDAAHLIHPLAGQGMNLGLRD 306
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
10-72 1.47e-04

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 43.74  E-value: 1.47e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19527030  10 RVAVIGGGLVGALNACFLAKRNFQVDVYEARediRVAKSARGRS---INLALSYRGRQALKAIGLE 72
Cdd:COG0665   4 DVVVIGGGIAGLSTAYHLARRGLDVTVLERG---RPGSGASGRNagqLRPGLAALADRALVRLARE 66
PRK08013 PRK08013
oxidoreductase; Provisional
 1-323 1.69e-04

oxidoreductase; Provisional


Pssm-ID: 236139 [Multi-domain]  Cd Length: 400  Bit Score: 43.88  E-value: 1.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030    1 MASSDtqgkrVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAKSA----RGRSINLAlsyrGRQALKAIGLEDQIV 76
Cdd:PRK08013   1 MQSVD-----VVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAppalRVSAINAA----SEKLLTRLGVWQDIL 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030   77 SKGvpmkarmihslsgkksAIPYGnksqyilsiSRENLNKDLL--TAVESYANAKVHFGHklskcIPEEGVL-------- 146
Cdd:PRK08013  72 ARR----------------ASCYH---------GMEVWDKDSFgrIAFDDQSMGYSHLGH-----IIENSVIhyalwqka 121

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  147 ------TVLGPDKVP----------------RDVTCDLVVGCDGAYSTVRAHLMKKPRF-DY----------TQQyiPHG 193
Cdd:PRK08013 122 qqssdiTLLAPAELQqvawgeneafltlkdgSMLTARLVVGADGANSWLRNKADIPLTFwDYqhhalvatirTEE--PHD 199

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19527030  194 YMELTIPPKNGEYAMEP-----NCLHIW---PRNAYMMIALPnmDKSFTCTLFMPFE--------EFERLptrsdvldff 257
Cdd:PRK08013 200 AVARQVFHGDGILAFLPlsdphLCSIVWslsPEEAQRMQQAP--EEEFNRALAIAFDnrlglcelESERQ---------- 267

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19527030  258 qknfpdAIPLMGEQAlmRDFfllpaqpmisvkcspfhlKSH-CVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK08013 268 ------VFPLTGRYA--RQF------------------AAHrLALVGDAAHTIHPLAGQGVNLGFMD 308
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 2-41 5.06e-04

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 42.55  E-value: 5.06e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 19527030    2 ASSDTqGKRVAVIGGGLVGALNACFLAKRNFQVDVYEARE 41
Cdd:PRK12771 132 PAPDT-GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 8-41 7.64e-04

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 41.66  E-value: 7.64e-04
                        10        20        30
                ....*....|....*....|....*....|....
gi 19527030   8 GKRVAVIGGGLVGALNACFLAKRNFQVDVYEARE 41
Cdd:COG0493 121 GKKVAVVGSGPAGLAAAYQLARAGHEVTVFEALD 154
PRK07233 PRK07233
hypothetical protein; Provisional
 10-43 9.94e-04

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 41.41  E-value: 9.94e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 19527030   10 RVAVIGGGLVGaLNACF-LAKRNFQVDVYEAREDI 43
Cdd:PRK07233   1 KIAIVGGGIAG-LAAAYrLAKRGHEVTVFEADDQL 34
PRK05714 PRK05714
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
 279-331 1.16e-03

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional


Pssm-ID: 168201 [Multi-domain]  Cd Length: 405  Bit Score: 41.35  E-value: 1.16e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 19527030  279 LLPAQPMISVKCSPFHLKSHC----VLMGDAAHAIVPFFGQGMNAGFEDCLVFDELM 331
Cdd:PRK05714 263 VLSADPRLCVPLRQRHAKRYVepglALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVL 319
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 8-43 1.35e-03

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 40.93  E-value: 1.35e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 19527030    8 GKRVAVIGGGLVGaLNACF-LAKRNFQVDVYEAREDI 43
Cdd:PRK11749 140 GKKVAVIGAGPAG-LTAAHrLARKGYDVTIFEARDKA 175
ubiF PRK08020
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
 300-332 2.37e-03

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed


Pssm-ID: 181199 [Multi-domain]  Cd Length: 391  Bit Score: 40.35  E-value: 2.37e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 19527030  300 VLMGDAAHAIVPFFGQGMNAGFEDClvfDELMD 332
Cdd:PRK08020 284 ALVGDAAHTINPLAGQGVNLGYRDV---DALLD 313
PRK07333 PRK07333
ubiquinone biosynthesis hydroxylase;
301-323 2.71e-03

ubiquinone biosynthesis hydroxylase;


Pssm-ID: 180935 [Multi-domain]  Cd Length: 403  Bit Score: 39.96  E-value: 2.71e-03
                         10        20
                 ....*....|....*....|...
gi 19527030  301 LMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK07333 284 LVGDAAHGIHPIAGQGLNLGLKD 306
PRK05335 PRK05335
tRNA (uracil-5-)-methyltransferase Gid; Reviewed
 9-40 4.27e-03

tRNA (uracil-5-)-methyltransferase Gid; Reviewed


Pssm-ID: 235416  Cd Length: 436  Bit Score: 39.36  E-value: 4.27e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 19527030    9 KRVAVIGGGLVGALNACFLAKRNFQVDVYEAR 40
Cdd:PRK05335   3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMR 34
PRK13984 PRK13984
putative oxidoreductase; Provisional
 7-40 4.94e-03

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 39.36  E-value: 4.94e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 19527030    7 QGKRVAVIGGGLVGALNACFLAKRNFQVDVYEAR 40
Cdd:PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESL 315
PRK12831 PRK12831
putative oxidoreductase; Provisional
 8-39 6.35e-03

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 38.85  E-value: 6.35e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 19527030    8 GKRVAVIGGGLVGALNACFLAKRNFQVDVYEA 39
Cdd:PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEA 171
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
6-45 6.75e-03

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 38.75  E-value: 6.75e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 19527030   6 TQGKRVAVIGGGLVGaLNACF-LAKRNFQVDVYEAREdiRV 45
Cdd:COG1231   5 ARGKDVVIVGAGLAG-LAAAReLRKAGLDVTVLEARD--RV 42
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 6-41 6.99e-03

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 38.68  E-value: 6.99e-03
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 19527030   6 TQGKRVAVIGGGLvGAL-NACFLAKRNFQVDVYEARE 41
Cdd:COG1233   1 MMMYDVVVIGAGI-GGLaAAALLARAGYRVTVLEKND 36
TrmFO COG1206
Folate-dependent tRNA-U54 methylase TrmFO/GidA [Translation, ribosomal structure and ...
 9-40 8.62e-03

Folate-dependent tRNA-U54 methylase TrmFO/GidA [Translation, ribosomal structure and biogenesis]; Folate-dependent tRNA-U54 methylase TrmFO/GidA is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440819  Cd Length: 436  Bit Score: 38.50  E-value: 8.62e-03
                        10        20        30
                ....*....|....*....|....*....|..
gi 19527030   9 KRVAVIGGGLVGALNACFLAKRNFQVDVYEAR 40
Cdd:COG1206   2 KPVTVIGGGLAGSEAAWQLAERGVPVRLYEMR 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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