|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
370-633 |
2.82e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.83 E-value: 2.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 370 IQAKLRELRQEVNT-ERAQMHARNQAYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQ 448
Cdd:COG1196 218 LKEELKELEAELLLlKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 449 QDLAHKEKCLAEMTAFVNAETQQKNEVIQQQAQQLQALELQREELEARQNNSIFELEQRKQLEAENADLKQELSAVQQTQ 528
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 529 SELQRVHAAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQ 608
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260
....*....|....*....|....*
gi 21358555 609 QQKQANALQSQLQEAQQRAEQLQAK 633
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAEL 482
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
347-870 |
1.25e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 1.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 347 QKLKRQLEEKEKLLAEEQEASIGIQAKLRELRQEVNTERAQMHARNQAY---IDKLQGKEQELAALNQELSSLNDKLTLE 423
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEyelLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 424 RQQLTTLRREKQANSQdlvQLQHLQQDLAHKEKCLAEMTAFVNAETQQKNEVIQQQAQQLQALELQREELEARQNNSIFE 503
Cdd:COG1196 322 EEELAELEEELEELEE---ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 504 LEQRKQLEAENADLKQELSAVQQTQSELQRVHAAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQtE 583
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE-A 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 584 ALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEqreknndvrmknWKLIEALQ 663
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE------------AALEAALA 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 664 NAEALTAKTKTNSAQSVGQQHKELQLQQQKAVAANGGGSASSAKSEQQRIRDLYQRLYPDAVKAQSGNALQASFDQWLEQ 743
Cdd:COG1196 546 AALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 744 VLATHVKQQQDKLRQKLDAEKSEKQSSSSHKSTQSSNSSSSNHNSTHNNISSNNSSSNSQSSSAAEQQELHKQNLQLREC 823
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 21358555 824 NDKLTQLVtkttntLMDLEERAREQDEHWRGIVEQKEQLILTLQQHA 870
Cdd:COG1196 706 ERELAEAE------EERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
398-694 |
8.85e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 8.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 398 KLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQDLAHKEKCLAEMTAFVNAETQQKNEVIQ 477
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 478 QQAQQLQALELQREELEarqnnsifelEQRKQLEAENADLKQELSAVQQTQSELQRVHAA---ELQELRQNLSVLEARNV 554
Cdd:TIGR02168 765 ELEERLEEAEEELAEAE----------AEIEELEAQIEQLKEELKALREALDELRAELTLlneEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 555 ALSQQLTQAAnsavQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKE 634
Cdd:TIGR02168 835 ATERRLEDLE----EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21358555 635 QHLQQELQEQREKNNDVRMKNWKL-IEALQNAEALTAKTKTNsAQSVGQQHKELQLQQQKA 694
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLeVRIDNLQERLSEEYSLT-LEEAEALENKIEDDEEEA 970
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
370-632 |
1.17e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 370 IQAKLRELRQEVNTERAQMHARNQayidKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSqdlVQLQHLQQ 449
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEE----EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE---AQLEELES 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 450 DLAHKEKCLAEmtafVNAETQQKNEVIQQQAQQLQALELQREELEARQNnsifelEQRKQLEAENADLKQELSAVQQTQS 529
Cdd:TIGR02168 331 KLDELAEELAE----LEEKLEELKEELESLEAELEELEAELEELESRLE------ELEEQLETLRSKVAQLELQIASLNN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 530 ELQRVhAAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQaqvqteALAQKQQELSALRSQVGSLTDAHAQQ 609
Cdd:TIGR02168 401 EIERL-EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE------ELEELQEELERLEEALEELREELEEA 473
|
250 260
....*....|....*....|...
gi 21358555 610 QKQANALQSQLQEAQQRAEQLQA 632
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLER 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
373-652 |
4.35e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 4.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 373 KLRELRQEV-NTERAQMHARNQAYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQDL 451
Cdd:TIGR02168 214 RYKELKAELrELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 452 AHKEKCLAEMTAFVNAETQQKNEVIQQQAQQLQALELQREELE---ARQNNSIFEL-EQRKQLEAENADLKQELSAVQQT 527
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAeelAELEEKLEELkEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 528 QSELQRVH---AAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQTEA--------LAQKQQELSALR 596
Cdd:TIGR02168 374 LEELEEQLetlRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAelkelqaeLEELEEELEELQ 453
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 21358555 597 SQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREKNNDVR 652
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK 509
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
530-822 |
3.58e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 3.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 530 ELQRVHAAELQELRQNLSVLEARNVALSQQLTQAansavQATAAQSEQAQVQTEaLAQKQQELSALRSQVGSLTDAHAQQ 609
Cdd:COG1196 206 ERQAEKAERYRELKEELKELEAELLLLKLRELEA-----ELEELEAELEELEAE-LEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 610 QKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREKNNDvrmKNWKLIEALQNAEALTAKTKTNSAQSVGQQHKELQL 689
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE---LEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 690 QQQKAVAANgggSASSAKSEQQRIRDLYQRLYPDAVKAQSGNALQASFDQWLEQVLATHVKQQQDKLRQKLDAEKSEKQS 769
Cdd:COG1196 357 EAELAEAEE---ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 21358555 770 SSSHKSTQSSNSSSSNHNSTHNNISSNNSSSNSQSSSAAEQQELHKQNLQLRE 822
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
490-648 |
3.59e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 3.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 490 REELEARQNNSIFELEQRKQLEAENADLKQELSAVQQTQSELQRVHAA-----ELQELRQNLSVLEARNVALSQQLTQAA 564
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlplyqELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 565 NSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQ 644
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
....
gi 21358555 645 REKN 648
Cdd:COG4717 240 ALEE 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
465-677 |
3.97e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 3.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 465 VNAETQQKNEVIQQQAQQLQALELQREELEARQNNSIfelEQRKQLEAENADLKQELSAVQQTQSELQRVHAAELQELRQ 544
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALA---RRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 545 NLSVLEARN------VALSQQLTQAANSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQS 618
Cdd:COG4942 109 LLRALYRLGrqpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 21358555 619 QLQEAQQRAEQLQAKEQHLQQELQEQREKNNDVRMKNWKLIEALQNAEALTAKTKTNSA 677
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
505-760 |
8.20e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 8.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 505 EQRKQLEAENADLKQELSAVQQTQSELQrvhaAELQELRQNLSVLearnvalsQQLTQAANSAVQATAAQSEqaqvqtea 584
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALE----AELDALQERREAL--------QRLAEYSWDEIDVASAERE-------- 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 585 LAQKQQELSALR---SQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREKNNDVRmknwKLIEA 661
Cdd:COG4913 670 IAELEAELERLDassDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAE----DLARL 745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 662 LQNAEALTAKTKTNSAQSVGQQHKELQLQQQKAVAAngggsASSAKSEQQRIRDLYQRLYPDAVK-AQSGNALQASFDQW 740
Cdd:COG4913 746 ELRALLEERFAAALGDAVERELRENLEERIDALRAR-----LNRAEEELERAMRAFNREWPAETAdLDADLESLPEYLAL 820
|
250 260
....*....|....*....|
gi 21358555 741 LEQVLATHVKQQQDKLRQKL 760
Cdd:COG4913 821 LDRLEEDGLPEYEERFKELL 840
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
371-615 |
8.42e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 8.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 371 QAKLRELRQEVNTERAQMhARNQAYIDKLQgkeQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQdlvQLQHLQQD 450
Cdd:COG4942 26 EAELEQLQQEIAELEKEL-AALKKEEKALL---KQLAALERRIAALARRIRALEQELAALEAELAELEK---EIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 451 LAHKEKCLAEMTAfvnaeTQQKNEviqqqaqqlqalELQREELEARQNNSIFELEQRKQLEAENADLKQELSAVQQTQSE 530
Cdd:COG4942 99 LEAQKEELAELLR-----ALYRLG------------RQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 531 LQRVhAAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQ 610
Cdd:COG4942 162 LAAL-RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
....*
gi 21358555 611 KQANA 615
Cdd:COG4942 241 ERTPA 245
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
424-631 |
8.62e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 49.52 E-value: 8.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 424 RQQLTTLRREKQANSQDLVQLQHLQQD---LAHKEKCLAEMTAFVN------AETQQKNEVIQQQAQQLQALELQR---- 490
Cdd:PRK11281 42 QAQLDALNKQKLLEAEDKLVQQDLEQTlalLDKIDRQKEETEQLKQqlaqapAKLRQAQAELEALKDDNDEETRETlstl 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 491 --EELEARQNNSIFELEQ-RKQLEAENADLkqelsAVQQTQSElqRVHAA------ELQELRQNLSVLEARNVALSQQLT 561
Cdd:PRK11281 122 slRQLESRLAQTLDQLQNaQNDLAEYNSQL-----VSLQTQPE--RAQAAlyansqRLQQIRNLLKGGKVGGKALRPSQR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 562 QAANSAVQATAAQSEQAQVQTEA------LAQKQQELSALRSQvgsltdahaQQQKQANALQS-----QLQEAQQRAEQL 630
Cdd:PRK11281 195 VLLQAEQALLNAQNDLQRKSLEGntqlqdLLQKQRDYLTARIQ---------RLEHQLQLLQEainskRLTLSEKTVQEA 265
|
.
gi 21358555 631 Q 631
Cdd:PRK11281 266 Q 266
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
399-597 |
1.17e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 48.42 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 399 LQGKEQELAALNQELSSLNDKLTLERQQLTTLRRekqansqdlvQLQHLQQDLAHKEKclaemtafvnaetqqkneviqq 478
Cdd:PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQD----------SVANLRASLSAAEA---------------------- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 479 qaqqlqalelqreeLEARQNNSIFELE-QRKQLEAENADLKQELSAVQQTQSELQRvhaaELQELRQNLSvlearnvALS 557
Cdd:PRK09039 96 --------------ERSRLQALLAELAgAGAAAEGRAGELAQELDSEKQVSARALA----QVELLNQQIA-------ALR 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 21358555 558 QQLtQAANSAVQATAAQSEQAQVQTE--------ALAQKQQELSALRS 597
Cdd:PRK09039 151 RQL-AALEAALDASEKRDRESQAKIAdlgrrlnvALAQRVQELNRYRS 197
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
396-626 |
1.49e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 396 IDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQAnSQDLVQLQHLQQDLAhkekclaemtafvnaetqqknev 475
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREA-LQRLAEYSWDEIDVA----------------------- 664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 476 iqqqaqqlqaleLQREELEARQnnsifelEQRKQLEAENAD---LKQELSAVQQTQSELQRvhaaELQELRQNLSVLEAR 552
Cdd:COG4913 665 ------------SAEREIAELE-------AELERLDASSDDlaaLEEQLEELEAELEELEE----ELDELKGEIGRLEKE 721
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21358555 553 NVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQR 626
Cdd:COG4913 722 LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
509-633 |
1.79e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 47.65 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 509 QLEAENADLKQELSAVQQTQSELQrvhaAELQELRQNLSVLEARNVALSQQLTQAANSAVQATaaqsEQAQVQTEALAQK 588
Cdd:PRK09039 57 RLNSQIAELADLLSLERQGNQDLQ----DSVANLRASLSAAEAERSRLQALLAELAGAGAAAE----GRAGELAQELDSE 128
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 21358555 589 QQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAK 633
Cdd:PRK09039 129 KQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
425-632 |
1.84e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 425 QQLTTLRREKQANSQDLV--QLQHLQQDLAHKEKCLAE-----MTAFVNAETQQKNEVIQQQAQQLQALELQREELEARQ 497
Cdd:COG3206 163 EQNLELRREEARKALEFLeeQLPELRKELEEAEAALEEfrqknGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 498 NnsifELEQRKQLEAENADLKQELSAVQQTQSELQRVhAAELQELRQNLSV-------LEARNVALSQQLTQAANSAVQA 570
Cdd:COG3206 243 A----ALRAQLGSGPDALPELLQSPVIQQLRAQLAEL-EAELAELSARYTPnhpdviaLRAQIAALRAQLQQEAQRILAS 317
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 21358555 571 TAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQA 632
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARL 379
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
394-633 |
3.36e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 3.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 394 AYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQDLAHKEKCLAEMTAFVNAETQQKN 473
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 474 EVIQQQAQQLQALELQREELEARQNN---SIFELEQR------KQLEAENADLKQELS----AVQQTQSELQRVHAAE-- 538
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKleeALNDLEARlshsriPEIQAELSKLEEEVSrieaRLREIEQKLNRLTLEKey 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 539 LQELRQNLSV----LEARNVALSQQLtQAANSAVQATAAQSEQAQVqteALAQKQQELSALRSQVGSLTDAHAQQQKQAN 614
Cdd:TIGR02169 831 LEKEIQELQEqridLKEQIKSIEKEI-ENLNGKKEELEEELEELEA---ALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
250
....*....|....*....
gi 21358555 615 ALQSQLQEAQQRAEQLQAK 633
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAK 925
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
411-633 |
3.72e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 411 QELSSLNDKLTLERQQLTTLRREKQANSQdlvqLQHLQQDLAHKEKCLAEMTAFVNAETQQkneviqqqaqqlqaleLQR 490
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEPIRELAER----YAAARERLAELEYLRAALRLWFAQRRLE----------------LLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 491 EELEARQnnsifelEQRKQLEAENADLKQELSAVQQTQSELQRVHA----AELQELRQNLSVLEARNVALSQQLTQAANS 566
Cdd:COG4913 295 AELEELR-------AELARLEAELERLEARLDALREELDELEAQIRgnggDRLEQLEREIERLERELEERERRRARLEAL 367
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21358555 567 AVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAK 633
Cdd:COG4913 368 LAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
490-652 |
3.88e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 490 REELEARqnnsifeleqRKQLEAENADLKQELSAVQQTQSELQRVhaAELQELRQNLSVLEARNVALSQQLTQ--AANSA 567
Cdd:COG4913 619 LAELEEE----------LAEAEERLEALEAELDALQERREALQRL--AEYSWDEIDVASAEREIAELEAELERldASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 568 VQATAAQSEQAQVQTEALaqkQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREK 647
Cdd:COG4913 687 LAALEEQLEELEAELEEL---EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAV 763
|
....*
gi 21358555 648 NNDVR 652
Cdd:COG4913 764 ERELR 768
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
499-632 |
6.79e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 6.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 499 NSIFELEQRKQLEAENADLKQELsavQQTQSELQRVHAAElqelrqnlsvleARNVALSQQLTQAANSAVQATAAQSEQA 578
Cdd:PRK11281 43 AQLDALNKQKLLEAEDKLVQQDL---EQTLALLDKIDRQK------------EETEQLKQQLAQAPAKLRQAQAELEALK 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 21358555 579 QVQTEALAQ--KQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQA 632
Cdd:PRK11281 108 DDNDEETREtlSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQA 163
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
398-633 |
9.68e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 9.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 398 KLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQdlvQLQHLQQDLAHKEKCLAEMTAFVNAETQQKNEviq 477
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR---RIRALEQELAALEAELAELEKEIAELRAELEA--- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 478 qqaqqlqalelqREELEARQNNSIFELEQRKQLEA-ENADLKQELSAVQQTQSELQRVHAAELQELRQNLSVLEARNVAL 556
Cdd:COG4942 102 ------------QKEELAELLRALYRLGRQPPLALlLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21358555 557 SQQLTQAAnsavQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAK 633
Cdd:COG4942 170 EAERAELE----ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
490-707 |
1.84e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 490 REELEARQNNSIFELEQRKQLEAENADLKQELSAVQQTQSELQrvhaAELQELRQNLSVLEARNVALSQQL-TQAANSAV 568
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE----QELAALEAELAELEKEIAELRAELeAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 569 QATAAQSEQAQVQTEALAQKQQELSALRSQ--VGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQRE 646
Cdd:COG4942 109 LLRALYRLGRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21358555 647 KNNDVRMKNWKLIEALQNAEALTAK---TKTNSAQSVGQQHKELQLQQQKAVAANGGGSASSAK 707
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAelaELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
505-632 |
2.96e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.43 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 505 EQRKQLEAENADLKQELSAVQQTQSELQRvHAAELQELRQNlsvlearnvaLSQQLTQAANSAVQatAAQSEQAQVQTEA 584
Cdd:PRK00409 527 ELERELEQKAEEAEALLKEAEKLKEELEE-KKEKLQEEEDK----------LLEEAEKEAQQAIK--EAKKEADEIIKEL 593
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 21358555 585 LAQKQQELSALRSQvgSLTDAHAQQQKQANALQSQLQEAQQRAEQLQA 632
Cdd:PRK00409 594 RQLQKGGYASVKAH--ELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
347-720 |
3.35e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 347 QKLKRQLEEKEKLLAEEQEASIGIQAKLRELRQEVNTERAQMHARNQAYIDKLQGKEQELAALNQELSSLNDKLTLERQQ 426
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 427 LTTLRREKQANSQDLVQLQHLQQDLAHKEKCLAEMTAFVNAETQQKN---------EVIQQQAQQLQALELQREELEARQ 497
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlaglrglagAVAVLIGVEAAYEAALEAALAAAL 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 498 NNSIFELEQRKQLEAENADLKQELSA------VQQTQSELQRVHAAELQELRQNLSVLEARNVALSQQLTQAANSAVQAT 571
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRAtflpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 572 AAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREKNNDV 651
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 21358555 652 RmknwKLIEALQNAEALTAKTKTNSAQSVGQQHKELQLQQQKAVAANGGGSASSAKSE---QQRIRDLYQRL 720
Cdd:COG1196 709 L----AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLeelERELERLEREI 776
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
374-633 |
4.45e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 374 LRELRQEVNTERAQMHARNQAYID---KLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQD 450
Cdd:pfam15921 477 LRKVVEELTAKKMTLESSERTVSDltaSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQ 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 451 LAHKEKCLaemtAFVNAETQQKNEVIQQQAQQLQALELQREELEARQNNSIFELEQRK-----------QLEAENADLKQ 519
Cdd:pfam15921 557 MAEKDKVI----EILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdkkdakirELEARVSDLEL 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 520 ELSAVQQTQSELQRVHAAELQELRQNLSVLEARNVALSqQLTQAANSAVQATAAQSEQAQVQTEALAQK----QQELSAL 595
Cdd:pfam15921 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELN-SLSEDYEVLKRNFRNKSEEMETTTNKLKMQlksaQSELEQT 711
|
250 260 270
....*....|....*....|....*....|....*...
gi 21358555 596 RSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAK 633
Cdd:pfam15921 712 RNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSK 749
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
443-633 |
5.04e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 5.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 443 QLQHLQQDLAHKEKCLAEMTAFVNAETQQKNEViqqqaqqlqaleLQREELEARQNNSIFELEQRKQLEAENADLKQELS 522
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDAL------------QERREALQRLAEYSWDEIDVASAEREIAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 523 AVQQTQSELQrvhaaelqELRQNLSVLEARNVALSQQLtQAANSAVQATAAQSEQAQVQTEALAQKQQELSAL-RSQVGS 601
Cdd:COG4913 679 RLDASSDDLA--------ALEEQLEELEAELEELEEEL-DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLaRLELRA 749
|
170 180 190
....*....|....*....|....*....|..
gi 21358555 602 LTDAHAQQQKQANALQSQLQEAQQRAEQLQAK 633
Cdd:COG4913 750 LLEERFAAALGDAVERELRENLEERIDALRAR 781
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
376-747 |
5.59e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 5.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 376 ELRQEVNTERAQMHARNQAYID---KLQGKEQELAALNQELSSLNDKLTLERqqlTTLRREKqansqdlvQLQHLQQDLA 452
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEmarELAELNEAESDLEQDYQAASDHLNLVQ---TALRQQE--------KIERYQADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 453 HKEKCLAEMTAFVNAETQQKNEViqqqaqqlqalelqREELEARQnnsifelEQRKQLEAENADLKQELSaVQQTQSeLQ 532
Cdd:PRK04863 359 ELEERLEEQNEVVEEADEQQEEN--------------EARAEAAE-------EEVDELKSQLADYQQALD-VQQTRA-IQ 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 533 RVHAAE-LQELRQ----------NLSVLEARNVALSQQLTQAANSAVQataaqseQAQVQTEALAQKQQELSALRSQVGS 601
Cdd:PRK04863 416 YQQAVQaLERAKQlcglpdltadNAEDWLEEFQAKEQEATEELLSLEQ-------KLSVAQAAHSQFEQAYQLVRKIAGE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 602 LTDAHAQQqkQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREKNNDVRMK---NWKLIEALQNAEALTAKtktnsaq 678
Cdd:PRK04863 489 VSRSEAWD--VARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLaefCKRLGKNLDDEDELEQL------- 559
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 21358555 679 svgQQHKELQLQQQKAVAANGGGSASSAKSEQQRIRDLYQRLypdAVKAQSGNALQASFDQWLEQVLAT 747
Cdd:PRK04863 560 ---QEELEARLESLSESVSEARERRMALRQQLEQLQARIQRL---AARAPAWLAAQDALARLREQSGEE 622
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
372-633 |
1.27e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 372 AKLRELRQEVNTERAQMHARNQAYIDKLQGKEQELAALNQELSSLN--DKLTLErQQLTTLRREKQANSQDLVQLQHLQQ 449
Cdd:PRK04863 840 RQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNllADETLA-DRVEEIREQLDEAEEAKRFVQQHGN 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 450 DLAHKEKCLAEMTAFVNAETQQKNEVIQQQAQQLQALELQREELEARQNNSIFELEQRKQLEAENAD----LKQELSAVQ 525
Cdd:PRK04863 919 ALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDlnekLRQRLEQAE 998
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 526 QTQSELQ---RVHAAELQELRQNLSVLEARNVALSQQLTQAANS----AVQATAAQSEQAQVQTE----ALAQKQQELSA 594
Cdd:PRK04863 999 QERTRAReqlRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQElqdlGVPADSGAEERARARRDelhaRLSANRSRRNQ 1078
|
250 260 270
....*....|....*....|....*....|....*....
gi 21358555 595 LRSQVGSLTDAHAQQQKQANALQSQLQeaQQRAEQLQAK 633
Cdd:PRK04863 1079 LEKQLTFCEAEMDNLTKKLRKLERDYH--EMREQVVNAK 1115
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
371-625 |
1.37e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 371 QAKLRELRQEVNTERAQMharnqayidklqgkEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQD 450
Cdd:pfam12128 282 QETSAELNQLLRTLDDQW--------------KEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 451 -LAHKEKCLAEMTAFVNAETQQKNEViqqqaqqlQALELQREELEARQNN---SIFELEQRKQLEAENADLKQELSAVQQ 526
Cdd:pfam12128 348 qLPSWQSELENLEERLKALTGKHQDV--------TAKYNRRRSKIKEQNNrdiAGIKDKLAKIREARDRQLAVAEDDLQA 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 527 TQSELQRVHAAELQELRQ----------NLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQkQQELSALR 596
Cdd:pfam12128 420 LESELREQLEAGKLEFNEeeyrlksrlgELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERL-QSELRQAR 498
|
250 260
....*....|....*....|....*....
gi 21358555 597 SQVGSLTDAHAQQQKQANALQSQLQEAQQ 625
Cdd:pfam12128 499 KRRDQASEALRQASRRLEERQSALDELEL 527
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
384-626 |
1.57e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 41.44 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 384 ERAQMHARNQ---AYIDKLQGKEQELAALNQELSSLNDKLTLER--------QQLTTLRRE----KQANSQDLVQLQHLQ 448
Cdd:pfam00038 2 EKEQLQELNDrlaSYIDKVRFLEQQNKLLETKISELRQKKGAEPsrlyslyeKEIEDLRRQldtlTVERARLQLELDNLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 449 QDLAH-KEKCLAEMTAFVNAETQqknevIQQQAQQLQALELQREELEARQNNSIFELEQRKQL-EAENADLKQELSAvQQ 526
Cdd:pfam00038 82 LAAEDfRQKYEDELNLRTSAEND-----LVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNhEEEVRELQAQVSD-TQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 527 TQSELQRVH----AAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSeqaqvqTEALAQKQQELSALRSQVGSL 602
Cdd:pfam00038 156 VNVEMDAARkldlTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARN------GDALRSAKEEITELRRTIQSL 229
|
250 260
....*....|....*....|....
gi 21358555 603 TDAHAQQQKQANALQSQLQEAQQR 626
Cdd:pfam00038 230 EIELQSLKKQKASLERQLAETEER 253
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
376-692 |
2.01e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 376 ELRQEVNTERAQMHARNQAYI---DKLQGKEQELAALNQELSSLNDKLTLERQQLttlrreKQANsqdlvQLQHLQQDLA 452
Cdd:COG3096 289 ELRRELFGARRQLAEEQYRLVemaRELEELSARESDLEQDYQAASDHLNLVQTAL------RQQE-----KIERYQEDLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 453 HKEKCLAEMTAFVNAETQQKNEviqqqaqqlqalelQREELEARQnnsifelEQRKQLEAENADLKQELSaVQQTQS--E 530
Cdd:COG3096 358 ELTERLEEQEEVVEEAAEQLAE--------------AEARLEAAE-------EEVDSLKSQLADYQQALD-VQQTRAiqY 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 531 LQRVHAAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQA-QVQTEALAQKQQELSALRSQVGSLTDAHAQQ 609
Cdd:COG3096 416 QQAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKlSVADAARRQFEKAYELVCKIAGEVERSQAWQ 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 610 Q---------------KQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREKNNDVRMKNWKLIEALQNAEALTAKTKT 674
Cdd:COG3096 496 TarellrryrsqqalaQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAE 575
|
330
....*....|....*...
gi 21358555 675 NSAQSVGQQHKELQLQQQ 692
Cdd:COG3096 576 AVEQRSELRQQLEQLRAR 593
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
443-632 |
2.27e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 41.22 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 443 QLQHLQQDLAHKEKClaemtafVNAETQQKNEVIQQQAQQLQALELQREELEARQNnsifeleQRKQLEAENADLKQELS 522
Cdd:PRK11637 48 QLKSIQQDIAAKEKS-------VRQQQQQRASLLAQLKKQEEAISQASRKLRETQN-------TLNQLNKQIDELNASIA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 523 AVQQTQSELQRVHAAEL-----QELRQNLSVL--------EARNVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQKQ 589
Cdd:PRK11637 114 KLEQQQAAQERLLAAQLdaafrQGEHTGLQLIlsgeesqrGERILAYFGYLNQARQETIAELKQTREELAAQKAELEEKQ 193
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 21358555 590 QE----LSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQA 632
Cdd:PRK11637 194 SQqktlLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRA 240
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
372-629 |
3.01e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 372 AKLRELRQEVNTERAQmHARNQAYIDKLQGKEQELAALNQELSSLndkltleRQQLTTLRREKQAnSQDLVQLQHLQQDL 451
Cdd:COG4717 71 KELKELEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEEL-------REELEKLEKLLQL-LPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 452 AHKEKCLAEMTAFVNAETQQKNEViqqQAQQLQALELQREELEARQNNSIFELEQRKQLEAENADLKQELSAVQQTQSEL 531
Cdd:COG4717 142 AELPERLEELEERLEELRELEEEL---EELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 532 QRvhaaELQELRQNLSVLEARNVALS-QQLTQAANSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQ 610
Cdd:COG4717 219 QE----ELEELEEELEQLENELEAAAlEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLA 294
|
250
....*....|....*....
gi 21358555 611 KQANALQSQLQEAQQRAEQ 629
Cdd:COG4717 295 REKASLGKEAEELQALPAL 313
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
398-688 |
3.46e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 398 KLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKqansQDLVQLQHLQqdlahKEKCLAEMTAFVNaetqQKNEVIQ 477
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRRER----EKAERYQALL-----KEKREYEGYELLK----EKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 478 QQAQQLQALELQREELEARQnnsiFELEQR-KQLEAENADLKQELSAVQQTQSELQRVHAAELQELRQNLSVLEARNVAL 556
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLT----EEISELeKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 557 SQQLTQAANSAVQATAAQSEQaQVQTEALAQKQQELSALRSQvgsLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQH 636
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKL-LAEIEELEREIEEERKRRDK---LTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 21358555 637 LQQELQEQREKNNDVRMKNWKLIEALQNAEALTAKTKtNSAQSVGQQHKELQ 688
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLN-AAIAGIEAKINELE 440
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
318-631 |
3.69e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 318 SEIQILIDYLLNKQQDMPASHSEWSDDICQKLKRQLEEKEKLLAEEQEASIGIQAKLRELRQEVNTERAQM-----HARN 392
Cdd:pfam15921 231 TEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLeiiqeQARN 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 393 Q--AYIDKLQGKEQELAALNQEL-----------SSLNDKLTLERQQLTTLRREKQANSQDLV----QLQHLQQDLAHKE 455
Cdd:pfam15921 311 QnsMYMRQLSDLESTVSQLRSELreakrmyedkiEELEKQLVLANSELTEARTERDQFSQESGnlddQLQKLLADLHKRE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 456 KCLAemtafvnAETQQKNEVIQQQAQQLQALELQREELEARqNNSIFELEQ-RKQLEAE-NADLKQELSAVQQTQSELQR 533
Cdd:pfam15921 391 KELS-------LEKEQNKRLWDRDTGNSITIDHLRRELDDR-NMEVQRLEAlLKAMKSEcQGQMERQMAAIQGKNESLEK 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 534 VHA--AELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQvqteALAQKQQELSALRSQVgsltDAHAQQQK 611
Cdd:pfam15921 463 VSSltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKER----AIEATNAEITKLRSRV----DLKLQELQ 534
|
330 340
....*....|....*....|
gi 21358555 612 QANALQSQLQEAQQRAEQLQ 631
Cdd:pfam15921 535 HLKNEGDHLRNVQTECEALK 554
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
348-720 |
3.71e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 348 KLKRQLEEKEKLLAEEQEASIGIQAKLRELRQEVNTERAQmhaRNQAYIDKLQGKEQELAALNQelsSLNDKLTLERQQL 427
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQ---AKKALEYYQLKEKLELEEEYL---LYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 428 TTLRREKQANSQdlvQLQHLQQDLAHKEKCLAEMTAFVNAETQQKNEVIQQQAQQLQALELQREELEARQNNSIFELEQR 507
Cdd:pfam02463 240 DLLQELLRDEQE---EIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 508 KQLEAENADLKQELSAVQQTQSELQrvhaAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQ 587
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELE----KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 588 KQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREKNNDVRMKNWKLIEALQNAEA 667
Cdd:pfam02463 393 KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 21358555 668 LTAKTKTnsAQSVGQQHKELQLQQQKAVAANGGGSASSAKSEQQRIRDLYQRL 720
Cdd:pfam02463 473 LLKETQL--VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
372-633 |
3.80e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 372 AKLRELRQEVNTERAQMHARNQAYIDKLQGKEQELAALNQELSSLN--DKLTLErQQLTTLRREKQANSQDLVQLQHLQQ 449
Cdd:COG3096 839 AALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANllADETLA-DRLEELREELDAAQEAQAFIQQHGK 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 450 DLAHkekcLAEMTAFVNAETQQKNEVIQQQAQQLQALELQREELEA----RQNNSIFELEQRKQLEAENAD----LKQEL 521
Cdd:COG3096 918 ALAQ----LEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFAlsevVQRRPHFSYEDAVGLLGENSDlnekLRARL 993
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 522 SAVQQTQS---ELQRVHAAELQELRQNLSVLEARNVALSQQLTQAANS----AVQATAAQSEQAQVQTEALaqkQQELSA 594
Cdd:COG3096 994 EQAEEARRearEQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQEleelGVQADAEAEERARIRRDEL---HEELSQ 1070
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 21358555 595 LRSQVGSLTDAHAQQQKQANALQSQLQEA-----QQRAEQLQAK 633
Cdd:COG3096 1071 NRSRRSQLEKQLTRCEAEMDSLQKRLRKAerdykQEREQVVQAK 1114
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
490-696 |
4.20e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 490 REELEARQNnsifELEQRKQlEAENADLKQELSAVQQTQSELQrvhaAELQELRQNLSVLEARNVALSQQLtqAANSAVQ 569
Cdd:COG3206 188 RKELEEAEA----ALEEFRQ-KNGLVDLSEEAKLLLQQLSELE----SQLAEARAELAEAEARLAALRAQL--GSGPDAL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 570 ATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQ--------EAQQRAEQLQAKEQHLQQEL 641
Cdd:COG3206 257 PELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQqeaqrilaSLEAELEALQAREASLQAQL 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 21358555 642 QEQREKNNDVRMKNWKLIEALQNAEALTAktktnSAQSVGQQHKELQLQQQKAVA 696
Cdd:COG3206 337 AQLEARLAELPELEAELRRLEREVEVARE-----LYESLLQRLEEARLAEALTVG 386
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
372-468 |
5.03e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 372 AKLRELRQEV---NTERAQM-HARNQAYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHL 447
Cdd:COG0542 411 EELDELERRLeqlEIEKEALkKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPEL 490
|
90 100
....*....|....*....|.
gi 21358555 448 QQDLAHKEKCLAEMTAFVNAE 468
Cdd:COG0542 491 EKELAELEEELAELAPLLREE 511
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
372-691 |
5.59e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 372 AKLRELRQEVNTERAQMHARNQAYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQDL 451
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 452 AHKEKCLAEMTAFVNA----ETQQKNEVIQQQAQQLQALELQREELEARQNNSIFELEqrKQLEAENADLKQELSAVQQT 527
Cdd:TIGR00618 267 ARIEELRAQEAVLEETqeriNRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRA--KLLMKRAAHVKQQSSIEEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 528 QSeLQRVHAAElQELRQNLSVLEARNVALSQQLTQAANsaVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHA 607
Cdd:TIGR00618 345 RL-LQTLHSQE-IHIRDAHEVATSIREISCQQHTLTQH--IHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFR 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358555 608 QQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREKNNDVRMKNWKLIEALQNAEALTAKtKTNSAQSVGQQHKEL 687
Cdd:TIGR00618 421 DLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQ-ETRKKAVVLARLLEL 499
|
....
gi 21358555 688 QLQQ 691
Cdd:TIGR00618 500 QEEP 503
|
|
| |
