|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
47-353 |
8.15e-46 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 161.23 E-value: 8.15e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 47 RIQTKAFQEYSPAHMDTVSVVA-ALNSDLCVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRM 125
Cdd:COG2319 106 DLATGLLLRTLTGHTGAVRSVAfSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGT 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 126 VMMWDLHgSSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQT 205
Cdd:COG2319 186 VRLWDLA-TGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASG 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 206 SEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHKCIScsngfGGEGCEATLWDLrQTRNRICEYKGHFQTVASCVF 285
Cdd:COG2319 265 SADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLAS-----GSDDGTVRLWDL-ATGKLLRTLTGHTGAVRSVAF 338
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 21687048 286 LPRAlalmPLIATSSHDCKVKIWNQDTGACLFTLSlDGSGPLTSLAV-GDAISLLCASFNRGIHLLRMD 353
Cdd:COG2319 339 SPDG----KTLASGSDDGTVRLWDLATGELLRTLT-GHTGAVTSVAFsPDGRTLASGSADGTVRLWDLA 402
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
60-349 |
5.64e-44 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 153.64 E-value: 5.64e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 60 HMDTVSVVAAL-NSDLCVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHgSSQPR 138
Cdd:cd00200 8 HTGGVTCVAFSpDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE-TGECV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 139 QQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRG 218
Cdd:cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 219 LQVAHMFPAkqHIQTYCEVSV--DGHKCISCSNgfggeGCEATLWDLRQTRNrICEYKGHFQTVASCVFLPRALalmpLI 296
Cdd:cd00200 167 GKCVATLTG--HTGEVNSVAFspDGEKLLSSSS-----DGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGY----LL 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 21687048 297 ATSSHDCKVKIWNQDTGACLFTLSLdGSGPLTSLAV-GDAISLLCASFNRGIHL 349
Cdd:cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSG-HTNSVTSLAWsPDGKRLASGSADGTIRI 287
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
100-265 |
5.09e-07 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 51.43 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 100 GHEHEITKVACIP-KSSQFFSASRDRMVMMWDL------HGSSQPRQQLCGHAMVVTGLAVSPDSSQ-LCTGSRDNTLLL 171
Cdd:PTZ00421 73 GQEGPIIDVAFNPfDPQKLFTASEDGTIMGWGIpeegltQNISDPIVHLQGHTKKVGIVSFHPSAMNvLASAGADMVVNV 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 172 WDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQhiqtycevSVDGHKCISC--SN 249
Cdd:PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA--------SAKSQRCLWAkrKD 224
|
170 180
....*....|....*....|..
gi 21687048 250 GFGGEGC------EATLWDLRQ 265
Cdd:PTZ00421 225 LIITLGCsksqqrQIMLWDTRK 246
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
134-173 |
9.27e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 45.00 E-value: 9.27e-07
10 20 30 40
....*....|....*....|....*....|....*....|
gi 21687048 134 SSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWD 173
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
135-173 |
5.04e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 42.72 E-value: 5.04e-06
10 20 30
....*....|....*....|....*....|....*....
gi 21687048 135 SQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWD 173
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
47-353 |
8.15e-46 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 161.23 E-value: 8.15e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 47 RIQTKAFQEYSPAHMDTVSVVA-ALNSDLCVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRM 125
Cdd:COG2319 106 DLATGLLLRTLTGHTGAVRSVAfSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGT 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 126 VMMWDLHgSSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQT 205
Cdd:COG2319 186 VRLWDLA-TGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASG 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 206 SEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHKCIScsngfGGEGCEATLWDLrQTRNRICEYKGHFQTVASCVF 285
Cdd:COG2319 265 SADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLAS-----GSDDGTVRLWDL-ATGKLLRTLTGHTGAVRSVAF 338
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 21687048 286 LPRAlalmPLIATSSHDCKVKIWNQDTGACLFTLSlDGSGPLTSLAV-GDAISLLCASFNRGIHLLRMD 353
Cdd:COG2319 339 SPDG----KTLASGSDDGTVRLWDLATGELLRTLT-GHTGAVTSVAFsPDGRTLASGSADGTVRLWDLA 402
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
60-349 |
5.64e-44 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 153.64 E-value: 5.64e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 60 HMDTVSVVAAL-NSDLCVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHgSSQPR 138
Cdd:cd00200 8 HTGGVTCVAFSpDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE-TGECV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 139 QQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRG 218
Cdd:cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 219 LQVAHMFPAkqHIQTYCEVSV--DGHKCISCSNgfggeGCEATLWDLRQTRNrICEYKGHFQTVASCVFLPRALalmpLI 296
Cdd:cd00200 167 GKCVATLTG--HTGEVNSVAFspDGEKLLSSSS-----DGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGY----LL 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 21687048 297 ATSSHDCKVKIWNQDTGACLFTLSLdGSGPLTSLAV-GDAISLLCASFNRGIHL 349
Cdd:cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSG-HTNSVTSLAWsPDGKRLASGSADGTIRI 287
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
65-332 |
1.03e-42 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 153.14 E-value: 1.03e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 65 SVVAALNSDLCVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHgSSQPRQQLCGH 144
Cdd:COG2319 83 SVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLA-TGKLLRTLTGH 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 145 AMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHM 224
Cdd:COG2319 162 SGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRT 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 225 FPAKQHIQTYCEVSVDGHKCIScsngfGGEGCEATLWDLrQTRNRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCK 304
Cdd:COG2319 242 LTGHSGSVRSVAFSPDGRLLAS-----GSADGTVRLWDL-ATGELLRTLTGHSGGVNSVAFSPDG----KLLASGSDDGT 311
|
250 260
....*....|....*....|....*...
gi 21687048 305 VKIWNQDTGACLFTLSlDGSGPLTSLAV 332
Cdd:COG2319 312 VRLWDLATGKLLRTLT-GHTGAVRSVAF 338
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
76-312 |
3.51e-42 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 151.60 E-value: 3.51e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 76 VSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHGSsQPRQQLCGHAMVVTGLAVSP 155
Cdd:COG2319 178 ASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATG-KLLRTLTGHSGSVRSVAFSP 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 156 DSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYC 235
Cdd:COG2319 257 DGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSV 336
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21687048 236 EVSVDGHKCIScsngfGGEGCEATLWDLrQTRNRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCKVKIWNQDT 312
Cdd:COG2319 337 AFSPDGKTLAS-----GSDDGTVRLWDL-ATGELLRTLTGHTGAVTSVAFSPDG----RTLASGSADGTVRLWDLAT 403
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
60-309 |
1.34e-38 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 139.39 E-value: 1.34e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 60 HMDTVSVVAAL-NSDLCVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHgSSQPR 138
Cdd:cd00200 50 HTGPVRDVAASaDGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 139 QQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRG 218
Cdd:cd00200 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 219 LQVAHMFPAKQHIQTYCEVSVDGHKCISCSngfggEGCEATLWDLRqTRNRICEYKGHFQTVASCVFLPRALALmpliAT 298
Cdd:cd00200 209 GKCLGTLRGHENGVNSVAFSPDGYLLASGS-----EDGTIRVWDLR-TGECVQTLSGHTNSVTSLAWSPDGKRL----AS 278
|
250
....*....|.
gi 21687048 299 SSHDCKVKIWN 309
Cdd:cd00200 279 GSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
58-353 |
2.18e-37 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 138.89 E-value: 2.18e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 58 PAHMDTVSVVAALNSDLCVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHGsSQP 137
Cdd:COG2319 34 GLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLAT-GLL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 138 RQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSR 217
Cdd:COG2319 113 LRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 218 GLQVAHMFPAKQHIQTYCEVSVDGHKCIScsngfGGEGCEATLWDLrQTRNRICEYKGHFQTVASCVFLP--RalalmpL 295
Cdd:COG2319 193 TGKLLRTLTGHTGAVRSVAFSPDGKLLAS-----GSADGTVRLWDL-ATGKLLRTLTGHSGSVRSVAFSPdgR------L 260
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 21687048 296 IATSSHDCKVKIWNQDTGACLFTLSlDGSGPLTSLAV-GDAISLLCASFNRGIHLLRMD 353
Cdd:COG2319 261 LASGSADGTVRLWDLATGELLRTLT-GHSGGVNSVAFsPDGKLLASGSDDGTVRLWDLA 318
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
67-349 |
1.59e-26 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 109.23 E-value: 1.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 67 VAALNSDLCVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLhGSSQPRQQLCGHAM 146
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDA-AAGALLATLLGHTA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 147 VVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFP 226
Cdd:COG2319 80 AVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 227 AKQHIQTYCEVSVDGHKCIScsngfGGEGCEATLWDLRqTRNRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCKVK 306
Cdd:COG2319 160 GHSGAVTSVAFSPDGKLLAS-----GSDDGTVRLWDLA-TGKLLRTLTGHTGAVRSVAFSPDG----KLLASGSADGTVR 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 21687048 307 IWNQDTGACLFTLSlDGSGPLTSLAV-GDAISLLCASFNRGIHL 349
Cdd:COG2319 230 LWDLATGKLLRTLT-GHSGSVRSVAFsPDGRLLASGSADGTVRL 272
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
137-349 |
9.16e-23 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 96.64 E-value: 9.16e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 137 PRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDS 216
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 217 RGLQVAHMFpaKQHIQ--TYCEVSVDGHkCISCSngfgGEGCEATLWDLRQTRNRICeYKGHFQTVASCVFLPRALalmp 294
Cdd:cd00200 81 ETGECVRTL--TGHTSyvSSVAFSPDGR-ILSSS----SRDKTIKVWDVETGKCLTT-LRGHTDWVNSVAFSPDGT---- 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 21687048 295 LIATSSHDCKVKIWNQDTGACLFTLSlDGSGPLTSLAV-GDAISLLCASFNRGIHL 349
Cdd:cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFsPDGEKLLSSSSDGTIKL 203
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
47-176 |
3.72e-22 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 96.52 E-value: 3.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 47 RIQTKAFQEYSPAHMDTVSVVA-ALNSDLCVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRM 125
Cdd:COG2319 274 DLATGELLRTLTGHSGGVNSVAfSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGT 353
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 21687048 126 VMMWDLHGsSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVT 176
Cdd:COG2319 354 VRLWDLAT-GELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLAT 403
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
100-265 |
5.09e-07 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 51.43 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 100 GHEHEITKVACIP-KSSQFFSASRDRMVMMWDL------HGSSQPRQQLCGHAMVVTGLAVSPDSSQ-LCTGSRDNTLLL 171
Cdd:PTZ00421 73 GQEGPIIDVAFNPfDPQKLFTASEDGTIMGWGIpeegltQNISDPIVHLQGHTKKVGIVSFHPSAMNvLASAGADMVVNV 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 172 WDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQhiqtycevSVDGHKCISC--SN 249
Cdd:PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA--------SAKSQRCLWAkrKD 224
|
170 180
....*....|....*....|..
gi 21687048 250 GFGGEGC------EATLWDLRQ 265
Cdd:PTZ00421 225 LIITLGCsksqqrQIMLWDTRK 246
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
134-173 |
9.27e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 45.00 E-value: 9.27e-07
10 20 30 40
....*....|....*....|....*....|....*....|
gi 21687048 134 SSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWD 173
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
91-130 |
1.61e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 44.23 E-value: 1.61e-06
10 20 30 40
....*....|....*....|....*....|....*....|
gi 21687048 91 TGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWD 130
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
135-173 |
5.04e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 42.72 E-value: 5.04e-06
10 20 30
....*....|....*....|....*....|....*....
gi 21687048 135 SQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWD 173
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
114-195 |
1.09e-05 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 46.99 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 114 SSQFFSASRDRMVmmwdlhgssqprQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERAsvSRNVVTHL 193
Cdd:pfam20426 105 SFQVISLNDGRMV------------QSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEVLRGRSSEKR--SRNTQTEF 170
|
..
gi 21687048 194 CW 195
Cdd:pfam20426 171 PR 172
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
92-130 |
4.54e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.02 E-value: 4.54e-05
10 20 30
....*....|....*....|....*....|....*....
gi 21687048 92 GNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWD 130
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
67-174 |
8.11e-04 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 41.61 E-value: 8.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 67 VAALNSDLCVSGGKDKTVVAYNWKTGNVVKRFKGHeheiTKVACIP------KSSQFFSAsrDRMVMMWDLHGSSQPRQQ 140
Cdd:PLN00181 583 YSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK----ANICCVQfpsesgRSLAFGSA--DHKVYYYDLRNPKLPLCT 656
|
90 100 110
....*....|....*....|....*....|....
gi 21687048 141 LCGHAMVVTGLAVSpDSSQLCTGSRDNTLLLWDV 174
Cdd:PLN00181 657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
266-309 |
3.50e-03 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 34.98 E-value: 3.50e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 21687048 266 TRNRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCKVKIWN 309
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDG----KYLASGSDDGTIKLWD 40
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
92-168 |
5.74e-03 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 38.51 E-value: 5.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687048 92 GNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWD-LHGSSQ---------------------PRQQLCGHAMVVT 149
Cdd:pfam20426 114 GRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEvLRGRSSekrsrntqtefprkdhviaetPFHILCGHDDIIT 193
|
90
....*....|....*....
gi 21687048 150 GLAVSPDSSQLCTGSRDNT 168
Cdd:pfam20426 194 CLYVSVELDIVISGSKDGT 212
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
176-215 |
8.58e-03 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 33.83 E-value: 8.58e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 21687048 176 TGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWD 215
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
267-309 |
8.97e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 33.86 E-value: 8.97e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 21687048 267 RNRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCKVKIWN 309
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDG----KLLASGSDDGTVKVWD 39
|
|
|