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Conserved domains on  [gi|21687188|ref|NP_660313|]
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proline-rich protein 35 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-C2H2_7 super family cl21122
Zinc-finger; this is a family of eukaryotic zinc-fingers.
 17-70 2.88e-31

Zinc-finger; this is a family of eukaryotic zinc-fingers.


The actual alignment was detected with superfamily member pfam15269:

Pssm-ID: 259402  Cd Length: 54  Bit Score: 115.12  E-value: 2.88e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 21687188    17 RSRKPKKPHYIPRPWGKPYNYKCFQCPFTCLEKSHLYNHMKYSLCKDSLSLLLD 70
Cdd:pfam15269   1 KERKPKKPHYIPRPPGKPFKYKCFQCPFTCMEKSHLFNHMKYNLCKNSISLLIE 54
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 71-509 3.42e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.79  E-value: 3.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188    71 SPDWACRRGSTTPRPHAPT-------PDRPGESDPGRQPQGARPTGAAPAPDlvvadihslhcGGGPKSRAKGSPGPPPP 143
Cdd:PHA03247 2563 APDRSVPPPRPAPRPSEPAvtsrarrPDAPPQSARPRAPVDDRGDPRGPAPP-----------SPLPPDTHAPDPPPPSP 2631

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   144 VARATRKGPGPSGLLPESWKPGMGGDPRGVGAGDMASAGPEGSVPCYPPPAPGEfPEAHSLHLSLLGVNYPLSPGLFSYL 223
Cdd:PHA03247 2632 SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR-RAARPTVGSLTSLADPPPPPPTPEP 2710

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   224 GPslaaaahvPFLASASPLLPPATAFPAVQPPQRPTPAPRlyyplllehtlGLPAGKAALA--KAPVSPRSPSGTPAPGL 301
Cdd:PHA03247 2711 AP--------HALVSATPLPPGPAAARQASPALPAAPAPP-----------AVPAGPATPGgpARPARPPTTAGPPAPAP 2771

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   302 LKVPVpglGPWPRVTPRDPGQEGELERAAQSDPRRRLSLGSRLELPKASPSLTRFCSRSSLPTGSSVMLWPEDGDPGGPE 381
Cdd:PHA03247 2772 PAAPA---AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   382 TPGPEGPL----------PLQPRGPVPGSPEHV-GEDLTRALGDYARVEQRLGQLGPAGGLAPRPLREQLGKIRLELLTI 450
Cdd:PHA03247 2849 SLPLGGSVapggdvrrrpPSRSPAAKPAAPARPpVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 21687188   451 HQALEQAVRPPDAPLDLSVKRAPAKGPQALGEAwgrPELGPVLTGGTPEPPGMLGPAAP 509
Cdd:PHA03247 2929 PQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ---PWLGALVPGRVAVPRFRVPQPAP 2984
 
Name Accession Description Interval E-value
zf-C2H2_7 pfam15269
Zinc-finger; this is a family of eukaryotic zinc-fingers.
 17-70 2.88e-31

Zinc-finger; this is a family of eukaryotic zinc-fingers.


Pssm-ID: 259402  Cd Length: 54  Bit Score: 115.12  E-value: 2.88e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 21687188    17 RSRKPKKPHYIPRPWGKPYNYKCFQCPFTCLEKSHLYNHMKYSLCKDSLSLLLD 70
Cdd:pfam15269   1 KERKPKKPHYIPRPPGKPFKYKCFQCPFTCMEKSHLFNHMKYNLCKNSISLLIE 54
PHA03247 PHA03247
large tegument protein UL36; Provisional
 71-509 3.42e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.79  E-value: 3.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188    71 SPDWACRRGSTTPRPHAPT-------PDRPGESDPGRQPQGARPTGAAPAPDlvvadihslhcGGGPKSRAKGSPGPPPP 143
Cdd:PHA03247 2563 APDRSVPPPRPAPRPSEPAvtsrarrPDAPPQSARPRAPVDDRGDPRGPAPP-----------SPLPPDTHAPDPPPPSP 2631

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   144 VARATRKGPGPSGLLPESWKPGMGGDPRGVGAGDMASAGPEGSVPCYPPPAPGEfPEAHSLHLSLLGVNYPLSPGLFSYL 223
Cdd:PHA03247 2632 SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR-RAARPTVGSLTSLADPPPPPPTPEP 2710

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   224 GPslaaaahvPFLASASPLLPPATAFPAVQPPQRPTPAPRlyyplllehtlGLPAGKAALA--KAPVSPRSPSGTPAPGL 301
Cdd:PHA03247 2711 AP--------HALVSATPLPPGPAAARQASPALPAAPAPP-----------AVPAGPATPGgpARPARPPTTAGPPAPAP 2771

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   302 LKVPVpglGPWPRVTPRDPGQEGELERAAQSDPRRRLSLGSRLELPKASPSLTRFCSRSSLPTGSSVMLWPEDGDPGGPE 381
Cdd:PHA03247 2772 PAAPA---AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   382 TPGPEGPL----------PLQPRGPVPGSPEHV-GEDLTRALGDYARVEQRLGQLGPAGGLAPRPLREQLGKIRLELLTI 450
Cdd:PHA03247 2849 SLPLGGSVapggdvrrrpPSRSPAAKPAAPARPpVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 21687188   451 HQALEQAVRPPDAPLDLSVKRAPAKGPQALGEAwgrPELGPVLTGGTPEPPGMLGPAAP 509
Cdd:PHA03247 2929 PQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ---PWLGALVPGRVAVPRFRVPQPAP 2984
 
Name Accession Description Interval E-value
zf-C2H2_7 pfam15269
Zinc-finger; this is a family of eukaryotic zinc-fingers.
 17-70 2.88e-31

Zinc-finger; this is a family of eukaryotic zinc-fingers.


Pssm-ID: 259402  Cd Length: 54  Bit Score: 115.12  E-value: 2.88e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 21687188    17 RSRKPKKPHYIPRPWGKPYNYKCFQCPFTCLEKSHLYNHMKYSLCKDSLSLLLD 70
Cdd:pfam15269   1 KERKPKKPHYIPRPPGKPFKYKCFQCPFTCMEKSHLFNHMKYNLCKNSISLLIE 54
PHA03247 PHA03247
large tegument protein UL36; Provisional
 71-509 3.42e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.79  E-value: 3.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188    71 SPDWACRRGSTTPRPHAPT-------PDRPGESDPGRQPQGARPTGAAPAPDlvvadihslhcGGGPKSRAKGSPGPPPP 143
Cdd:PHA03247 2563 APDRSVPPPRPAPRPSEPAvtsrarrPDAPPQSARPRAPVDDRGDPRGPAPP-----------SPLPPDTHAPDPPPPSP 2631

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   144 VARATRKGPGPSGLLPESWKPGMGGDPRGVGAGDMASAGPEGSVPCYPPPAPGEfPEAHSLHLSLLGVNYPLSPGLFSYL 223
Cdd:PHA03247 2632 SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR-RAARPTVGSLTSLADPPPPPPTPEP 2710

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   224 GPslaaaahvPFLASASPLLPPATAFPAVQPPQRPTPAPRlyyplllehtlGLPAGKAALA--KAPVSPRSPSGTPAPGL 301
Cdd:PHA03247 2711 AP--------HALVSATPLPPGPAAARQASPALPAAPAPP-----------AVPAGPATPGgpARPARPPTTAGPPAPAP 2771

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   302 LKVPVpglGPWPRVTPRDPGQEGELERAAQSDPRRRLSLGSRLELPKASPSLTRFCSRSSLPTGSSVMLWPEDGDPGGPE 381
Cdd:PHA03247 2772 PAAPA---AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   382 TPGPEGPL----------PLQPRGPVPGSPEHV-GEDLTRALGDYARVEQRLGQLGPAGGLAPRPLREQLGKIRLELLTI 450
Cdd:PHA03247 2849 SLPLGGSVapggdvrrrpPSRSPAAKPAAPARPpVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 21687188   451 HQALEQAVRPPDAPLDLSVKRAPAKGPQALGEAwgrPELGPVLTGGTPEPPGMLGPAAP 509
Cdd:PHA03247 2929 PQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ---PWLGALVPGRVAVPRFRVPQPAP 2984
PHA03247 PHA03247
large tegument protein UL36; Provisional
 78-544 6.16e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 6.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188    78 RGSTTPRPHAPTPDRPGESDPGRQPQGARPTGAAPAPdlvvadihslhCGGGPKSRAKGSPGPPPPVARATRKG-PGPSG 156
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT-----------VPPPERPRDDPAPGRVSRPRRARRLGrAAQAS 2677

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   157 LLPESWKPGMGGDPrgvgAGDMASAGPEGSVPCYPPPAPGEFPEAHSLHLSLLGVNYPLSPGLFSYLGPSLAAAAHVPfL 236
Cdd:PHA03247 2678 SPPQRPRRRAARPT----VGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP-G 2752

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   237 ASASPLLPPATAFP-AVQPPQRP--TPAPRLYYPLLLEHTLGLPAGKAALAKAPVSPRSPSGTPAPGLLKVPVPGLGPWP 313
Cdd:PHA03247 2753 GPARPARPPTTAGPpAPAPPAAPaaGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   314 RVTPRDPGQEGELER---------AAQSDPRRRLSLGSRLELPKASPSL-TRFCSRSSLPTGSSVMLWPEDGDPGGPETP 383
Cdd:PHA03247 2833 SAQPTAPPPPPGPPPpslplggsvAPGGDVRRRPPSRSPAAKPAAPARPpVRRLARPAVSRSTESFALPPDQPERPPQPQ 2912

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   384 GPEGPLPlQPRGPVPGSPEHVGEDLTRALGDYARVEQRLGQLGPAGGlAPRPLREQLGKIRLELLTIHQALEQAVRPPDA 463
Cdd:PHA03247 2913 APPPPQP-QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGA-VPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   464 PLDLSVKRAPAKGPQALGEAWG---RPELGPVLTGGTPEPPGML-GPAAPQPFSGHTTKCEA---DSSVPPPGLPLAAPD 536
Cdd:PHA03247 2991 SSTPPLTGHSLSRVSSWASSLAlheETDPPPVSLKQTLWPPDDTeDSDADSLFDSDSERSDLealDPLPPEPHDPFAHEP 3070


                  ....*...
gi 21687188   537 DPVIPGSG 544
Cdd:PHA03247 3071 DPATPEAG 3078
PHA03247 PHA03247
large tegument protein UL36; Provisional
 85-525 1.20e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188    85 PHAPTPDRPGES----------DPGRQPQ---GARPTGAAPAPDL-------------VVADIHSLH------CGGGPKS 132
Cdd:PHA03247 2475 PGAPVYRRPAEArfpfaagaapDPGGGGPpdpDAPPAPSRLAPAIlpdepvgepvhprMLTWIRGLEelasddAGDPPPP 2554

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   133 RAKGSPGPPP----PVARATRKGPGPS--------GLLPESWKPGMGGDPRGVGAGDMASAGPEGSVPCYPPPAPGEFPE 200
Cdd:PHA03247 2555 LPPAAPPAAPdrsvPPPRPAPRPSEPAvtsrarrpDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPA 2634

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   201 AHSLHLSLLGVNYPLSPGLFSYLGPSL-----AAAAHVPFLASASPLLPPATAFP---------AVQPPQRPTPAPRLyy 266
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDPAPGRVsrprrARRLGRAAQASSPPQRPRRRAARptvgsltslADPPPPPPTPEPAP-- 2712

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   267 PLLLEHTLGLPAGKAALAKAPVSPRSPSGTPAPGLLKVPV-PGLGPWPRVTPRDPGQEGELERAAQSDPRRRLSLGSRLE 345
Cdd:PHA03247 2713 HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGgPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLS 2792

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   346 LPKASPSLTRFCSRSSLPTGSSVMLWPEDGDPGGPETPgPEGPLPLQPRGPVPGSPEhvgedlTRALGDYARVEQRLGQL 425
Cdd:PHA03247 2793 ESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP-PTSAQPTAPPPPPGPPPP------SLPLGGSVAPGGDVRRR 2865

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   426 GPAGGLAPRPLREQLGKI-RLELLTIHQALEQAVRPPDAPldlsvkrAPAKGPQALGEAWGRPELGPVLTGGTPEPPGML 504
Cdd:PHA03247 2866 PPSRSPAAKPAAPARPPVrRLARPAVSRSTESFALPPDQP-------ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938

                         490       500
                  ....*....|....*....|.
gi 21687188   505 GPAAPQPFSGHTTKCEADSSV 525
Cdd:PHA03247 2939 PQPPLAPTTDPAGAGEPSGAV 2959
PHA03247 PHA03247
large tegument protein UL36; Provisional
 80-400 5.52e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 5.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188    80 STTPRPHAPTPDRPGESDPGRQPQGARPTGAAPAPDLVVADIHSLHCGGGPKSRAKGSPGPPPPVARATRKgPGPSGLLP 159
Cdd:PHA03247 2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP-PPPPGPPP 2847

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   160 ESWKPGMGGDPrgvgAGDMASAGPEGSVPCYPP----------PAPGEFPEAHSLHLSLLGVNYPLSPGLFSY-LGPSLA 228
Cdd:PHA03247 2848 PSLPLGGSVAP----GGDVRRRPPSRSPAAKPAaparppvrrlARPAVSRSTESFALPPDQPERPPQPQAPPPpQPQPQP 2923

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   229 AAAHVPFLASASPLLPPATAFPAVQPPQRPTPAPRLYYPLLLEHTLGLPAGKAALAKAPVSPRSPSGTPAPGLLKVPVPG 308
Cdd:PHA03247 2924 PPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   309 LGPWPrvtprdpgqeGELERAAQSDPrRRLSLGSRLELPKASPSLTRFCSRSSLPTGSSV-MLWPEDGDPGGPETPGPEG 387
Cdd:PHA03247 3004 VSSWA----------SSLALHEETDP-PPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLeALDPLPPEPHDPFAHEPDP 3072

                         330
                  ....*....|...
gi 21687188   388 PLPLQPRGPVPGS 400
Cdd:PHA03247 3073 ATPEAGARESPSS 3085
PHA03378 PHA03378
EBNA-3B; Provisional
 79-299 8.42e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 42.36  E-value: 8.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   79 GSTTPRPHAPTPDRPGESDPGRQPQGARPTGAAPAPDLVVADIHSLHCGGGPKSRAKGSPGPPPPVARATRKGPGPSGLL 158
Cdd:PHA03378 692 GTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAP 771

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188  159 -------PESWKPGMGGDPRGVGAGDMASAGPEGSVPCYPPPAPGE-FPEAHSLHLSLLGVNYPLSPGL-FSYLGPSLAA 229
Cdd:PHA03378 772 gaptpqpPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQqGPTKQILRQLLTGGVKRGRPSLkKPAALERQAA 851

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188  230 AAHVP--------FLASASPLLPPA-------------TAFPAVQPPQRPTPAPRLYYPLLLEHTLGLPAGKAALAKAPV 288
Cdd:PHA03378 852 AGPTPspgsgtsdKIVQAPVFYPPVlqpiqvmrqlgsvRAAAASTVTQAPTEYTGERRGVGPMHPTDIPPSKRAKTDAYV 931

                        250
                 ....*....|.
gi 21687188  289 SPRSPSGTPAP 299
Cdd:PHA03378 932 ESQPPHGGQSH 942
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
82-263 8.96e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.17  E-value: 8.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   82 TPRPHAPTPDRPGESDPGRQPQGARPTGAAPAPDLVVADIHSLHCGGGPKSRAKGSPgPPPPVARATRKGPGPSGllpes 161
Cdd:PRK12323 398 APAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP-AAAPAAAARPAAAGPRP----- 471

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188  162 wkpgmGGDPRGVGAGDMASAGPEGSVPCYPPP---APGEFPEAHslhlslLGVNYPLSPGLFSYLGPSLAAAAHVPFLAS 238
Cdd:PRK12323 472 -----VAAAAAAAPARAAPAAAPAPADDDPPPweeLPPEFASPA------PAQPDAAPAGWVAESIPDPATADPDDAFET 540

                        170       180
                 ....*....|....*....|....*
gi 21687188  239 ASPlLPPATAFPAVQPPQRPTPAPR 263
Cdd:PRK12323 541 LAP-APAAAPAPRAAAATEPVVAPR 564
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
71-293 1.22e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 1.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   71 SPDWACRRGSTTPRPHAPTPDRPGESDPGRQPQGARPTGAAPAPDLVVADIHSLHCGGGPKSRAKGSPGPPPPVARATRK 150
Cdd:PRK07003 411 APKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAF 490

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188  151 GPGPSGLLPESWKPGMGGDPRGVGAGDMAS--AGPEGSVPCYPPPAPGEFPEAHSLHLSLLGVNYPLSPGLFSYLGPSLA 228
Cdd:PRK07003 491 EPAPRAAAPSAATPAAVPDARAPAAASREDapAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGAR 570

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 21687188  229 AAAhvpflASASPLLPPATAFPAVQPPQRPTPAPRLyyPLLLEHTLGLPAGKAALAKAPVSPRSP 293
Cdd:PRK07003 571 AAA-----AAKPAAAPAAAPKPAAPRVAVQVPTPRA--RAATGDAPPNGAARAEQAAESRGAPPP 628
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 139-337 2.44e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 2.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188  139 GPPPPVARATRKGPGPSGLLPESWKPGMGGDPRGVGAGDMASAGPEGSVPCYPPPAPGEFPEAHSLHLSLLGVNYPLSPG 218
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188  219 LFSYLGPSLAAAAHVPFLASASPLLPPATAFPAVQPPQRPTPAPRlyyplllehtlglPAGKAALAKAPVSPRSPSGTPA 298
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQA-------------DDPAAQPPQAAQGASAPSPAAD 736

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 21687188  299 PGLLKVPVPGLGPWPRVTPRDPGQEGELERAAQSDPRRR 337
Cdd:PRK07764 737 DPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPP 775
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
98-322 3.28e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 3.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   98 PGRQPQGARPTGAAPAPdlvVADIHSLHCGGGPKSRAKGSPGPPPPVARATRKGPGPSGLLPESWKPGMGGDPRGVGAGD 177
Cdd:PRK12323 365 PGQSGGGAGPATAAAAP---VAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASA 441

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188  178 MASAGPEGSVPCYPP-PAPGEFPEAHSlhlsllgvnyPLSPGLFSYLGPSLAAAAHVPflASASPLLPPATAFPAVQPPQ 256
Cdd:PRK12323 442 RGPGGAPAPAPAPAAaPAAAARPAAAG----------PRPVAAAAAAAPARAAPAAAP--APADDDPPPWEELPPEFASP 509

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21687188  257 RPTPAPRLYYPLLLEhtlGLPAGKAALAKAPVSPRSPSGTPAPgllkVPVPGLGPWPRVTPRDPGQ 322
Cdd:PRK12323 510 APAQPDAAPAGWVAE---SIPDPATADPDDAFETLAPAPAAAP----APRAAAATEPVVAPRPPRA 568
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 244-402 3.44e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 3.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188  244 PPATAFPAVQPPQRPTPAPRLYYPLLLEHTLGLPAGKAALAKAPVSPRSPSGTPAPGLLKVPVPGLGPWPRVTPRDPGQE 323
Cdd:PRK07764 615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 21687188  324 GELERAAQSDPRRRLSLGSRLELPKASPSLTRFCSRSSLPTGSSVMLWPEDGDPGGPETPGPEGPLPLQPRGPVPGSPE 402
Cdd:PRK07764 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 73-293 5.10e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 5.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188   73 DWACRRGSTTPRPHAPTPDRPGESDPGRQPQGARPTGAAPAPDLVVAdihslHCGGGPksrakGSPGPPPPVARATRKGP 152
Cdd:PRK07764 581 DWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAP-----APAGAA-----AAPAEASAAPAPGVAAP 650

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21687188  153 GPSGLLPESWKPGMGGDPRGVGAGDMASAGPEGSVPCYPPPAPGEFPEAHSLHlsllgvnyplSPGLFSYLGPSLAAAAH 232
Cdd:PRK07764 651 EHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP----------APAATPPAGQADDPAAQ 720

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 21687188  233 VPfLASASPLLPPATAFPAVQPPQRPTPAPRLY-YPLLLEHTLGLPAGKAALAKAPVSPRSP 293
Cdd:PRK07764 721 PP-QAAQGASAPSPAADDPVPLPPEPDDPPDPAgAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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