|
Name |
Accession |
Description |
Interval |
E-value |
| CEP209_CC5 |
pfam16574 |
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry ... |
1290-1417 |
5.12e-36 |
|
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry a number of coiled-coil regions, and this is the fifth along the length of the protein. It is thought that the proteins are involved in cilia biosynthesis.
Pssm-ID: 465184 [Multi-domain] Cd Length: 128 Bit Score: 133.66 E-value: 5.12e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1290 TMIQLQNDKLKIMQEMKNSQQEHRNMENKTLELELKLKGLEELISTLKDARGAQKVINWHVKIEELRLQELKLNRELVKG 1369
Cdd:pfam16574 1 TMIQLQEDKAKLQEELKHAEEERRRAEDRAQELELKLKGLEELISTLKDGKGAQKVTEWHKKMEEIRLQELKLQRELSKQ 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 163965444 1370 KEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELER 1417
Cdd:pfam16574 81 KEEIKYLENLIREQERTISSLEEEIVQQTKLHEERQLAWDQREVELER 128
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1083-1858 |
2.09e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 2.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1083 HLRTSLKQMEERNFELETKFTELTKINLDAQKVEQMLRDELADSVTKavsdadRQRILELEKSEVELKVEVSKLREISDI 1162
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL------RLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1163 AKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKALIAKlhqhvvSLQISEATALGKLESVTSKLQKMEAYNLRLEQK 1242
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA------ELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1243 LDEKEQALYYARlegrNRAKHLRQTIQSLRrqfsgalplAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEL 1322
Cdd:TIGR02168 374 LEELEEQLETLR----SKVAQLELQIASLN---------NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1323 ELKLKGLEELISTLKDARGAQKVINWHVKIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHE 1402
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1403 ERQMAWDQREV----ELERQLDIFDHQQNEILSAAQKFEDSTGSMPDPSLPLPNQLE---IALRKIKENIQVILKTQATC 1475
Cdd:TIGR02168 521 ILGVLSELISVdegyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPldsIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1476 KSLEEKLKEKESALRLAEQNILSRDKVINELR--LRLPATADREKLIAELERKELEPKSHHTMKiAHQTIANMQARLNHK 1553
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDnaLELAKKLRPGYRIVTLDGDLVRPGGVITGG-SAKTNSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1554 EEVLKKYQHLLEKAREEQREIVkkheedlhvlhhKLEQQADNSLNKFRQTAQDLLKQSPAPVPTNKHFIRLAEMEQTVAE 1633
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALA------------ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1634 QDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQEthasEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQK 1713
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA----QIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1714 E--ANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMtAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQ 1791
Cdd:TIGR02168 824 ErlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI-EELESELEALLNERASLEEALALLRSELEELSEE 902
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 163965444 1792 IEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNK--------ILREKDGIDQENDELRRQIKRL 1858
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeysltleeAEALENKIEDDEEEARRRLKRL 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
28-660 |
1.61e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 1.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 28 LLISLSKVEVNELK------NEDQENMIHLFRITQSLMKMK----AQEVELALEEVEKAGEEQAKFeNQLKTKVMKLENE 97
Cdd:TIGR02168 225 LELALLVLRLEELReeleelQEELKEAEEELEELTAELQELeeklEELRLEVSELEEEIEELQKEL-YALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 98 LEMAQQSAggrdtRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLR 177
Cdd:TIGR02168 304 KQILRERL-----ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 178 QDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMR-----KNLEESVQEMEK 252
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEleeleEELEELQEELER 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 253 MTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKV----------------EEWKL- 315
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgilgvlselisvdEGYEAa 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 316 -----------ILSSKDDEIIEYQQML-QSLRGK-----LKNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEM 378
Cdd:TIGR02168 539 ieaalggrlqaVVVENLNAAKKAIAFLkQNELGRvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 379 E---KNTFIIEDLKNEL----QKDKGTSNFYQQTHYM-----------KIHSKVQILEEKTKEAERIAELAEADAREKDK 440
Cdd:TIGR02168 619 SyllGGVLVVDDLDNALelakKLRPGYRIVTLDGDLVrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 441 ELVEALKRLKDYESGVYGL----EDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMI 516
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 517 DLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASGLTIDDLNLSetfshENKIEGRKLN 596
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL-----EEQIEELSED 853
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 163965444 597 FMSLN-NMNETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIK 660
Cdd:TIGR02168 854 IESLAaEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1624-2341 |
7.51e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 7.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1624 LAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITEL--------------KVREFENTKLRLQ---ETHASEVKKVKA 1686
Cdd:TIGR02168 188 LDRLEDILNELERQLKSLERQAEKAERYKELKAELRELelallvlrleelreELEELQEELKEAEeelEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1687 EVEDLRHALAQAHKDSQSLKSELQAQKEANSRaptttMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIA 1766
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISR-----LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1767 VTSQKEANLNVQQVVERHTrELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQ 1846
Cdd:TIGR02168 343 EEKLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1847 ENDELRRQIKRLSSGLQSKTLiDNKQSLIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEEL----IRWEEGKKWQTK 1922
Cdd:TIGR02168 422 EIEELLKKLEEAELKELQAEL-EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlqARLDSLERLQEN 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1923 VEGLRNRLKEKEGEAHGLAKQLNTLKELF----------------------------AKADKEKLTLQKKLKTTGMTVDQ 1974
Cdd:TIGR02168 501 LEGFSEGVKALLKNQSGLSGILGVLSELIsvdegyeaaieaalggrlqavvvenlnaAKKAIAFLKQNELGRVTFLPLDS 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1975 VLGVRALESEKELEELKKKNLDLENDILYMRT------QQALPRDSVVEDL----HLQNKY-LQEKLHTLEKKL------ 2037
Cdd:TIGR02168 581 IKGTEIQGNDREILKNIEGFLGVAKDLVKFDPklrkalSYLLGGVLVVDDLdnalELAKKLrPGYRIVTLDGDLvrpggv 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2038 ----SKEKYSQSLTSEIESDDHCQK-------EQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKK 2106
Cdd:TIGR02168 661 itggSAKTNSSILERRREIEELEEKieeleekIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2107 GKLELERKLGQ-----VRGAGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKAsgiltSEKMATIEEENRNLKAELEKL 2181
Cdd:TIGR02168 741 EVEQLEERIAQlskelTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL-----KEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2182 KAHFGRQLSMQFESKNKGTEKIVaENERLRKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEG 2261
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATER-RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2262 ADSKSWKSIvvsRVYETKMKELESDIAKKNQSITDLKQLVREAT-EREQKAKKYTEDLEQQIEILKNVPEGAETEQELIR 2340
Cdd:TIGR02168 895 ELEELSEEL---RELESKRSELRRELEELREKLAQLELRLEGLEvRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
.
gi 163965444 2341 E 2341
Cdd:TIGR02168 972 R 972
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-744 |
3.05e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 3.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 93 KLENELEMAQQSAGGRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKK 172
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 173 NEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEK 252
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 253 MTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTD-LLKAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEYQQML 331
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDrRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 332 QSLRGKLKNA--QLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKE-------------------------------- 377
Cdd:TIGR02168 457 ERLEEALEELreELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegvkallknqsglsgilgvlselisvdegye 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 378 ---------------MEKNTFIIEDLKNELQKDKGTSNFY---QQTHYMKIHSKVQILEEKTKEAERIAELAEADAREKD 439
Cdd:TIGR02168 537 aaieaalggrlqavvVENLNAAKKAIAFLKQNELGRVTFLpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 440 ------------KELVEALKRLKDYESG-----------------VYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKL 490
Cdd:TIGR02168 617 alsyllggvlvvDDLDNALELAKKLRPGyrivtldgdlvrpggviTGGSAKTNSSILERRREIEELEEKIEELEEKIAEL 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 491 EMKINDILDENEALRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAA 570
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 571 SGLTIDDLNLSETfshenKIEGRKLNFMSLNNM-NETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLE 649
Cdd:TIGR02168 777 LAEAEAEIEELEA-----QIEQLKEELKALREAlDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 650 EGMKEILQAIKDMPKDSDVkggetslIIPSLERLVNAMESKNA--EGIFDASLHLKAQVDQLTGRNEELRQELRQSRKEA 727
Cdd:TIGR02168 852 EDIESLAAEIEELEELIEE-------LESELEALLNERASLEEalALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
730
....*....|....*..
gi 163965444 728 VNYSQQLVKANLKIDHL 744
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNL 941
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1646-2001 |
5.09e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 5.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1646 KKVSKDLEKQKEITELKvREFENTKLRLQETHAsEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEansraptttmr 1725
Cdd:TIGR02168 667 KTNSSILERRREIEELE-EKIEELEEKIAELEK-ALAELRKELEELEEELEQLRKELEELSRQISALRK----------- 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1726 nLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAvtsqkeanlnvqqvvERHTRELKSQIEDLNENLLKLKEA 1805
Cdd:TIGR02168 734 -DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA---------------EEELAEAEAEIEELEAQIEQLKEE 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1806 LKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLidnkqsLIDELQKKVKKL 1885
Cdd:TIGR02168 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA------EIEELEELIEEL 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1886 ESQLERKVDDVDIKPVKEKSSKEELIrweegkKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKL 1965
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELE------ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
330 340 350
....*....|....*....|....*....|....*.
gi 163965444 1966 KTTGMTVDQVLGVRALESEKELEELKKKNLDLENDI 2001
Cdd:TIGR02168 946 SEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
93-662 |
9.89e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 9.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 93 KLENELEMAQQSAGGRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKK 172
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 173 NEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEK 252
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 253 MTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEddpvmmavnakVEEWKLILSSKDDEIIEYQQMLQ 332
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE-----------LEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 333 SLRGKLKNAQLDAdKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQTHYMKIHS 412
Cdd:COG1196 446 EAAEEEAELEEEE-EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 413 KVQILEEKTKEAERIAELAEADA-----REKDKELVEALKRLKDYESG-------------------------VYGLEDA 462
Cdd:COG1196 525 AVAVLIGVEAAYEAALEAALAAAlqnivVEDDEVAAAAIEYLKAAKAGratflpldkiraraalaaalargaiGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 463 VIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKE 542
Cdd:COG1196 605 ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 543 IESLEEERLDLKRKIRQMAQERGKRNAASGLTIDDLNLSETFSHENKIEGRKLNFMSLNNMNETQSKNEFLSRE---LAE 619
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppdLEE 764
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 163965444 620 KEKDLERSRTVIAKF--------------QSKLKELVEENKQLEEGMKEILQAIKDM 662
Cdd:COG1196 765 LERELERLEREIEALgpvnllaieeyeelEERYDFLSEQREDLEEARETLEEAIEEI 821
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
525-1276 |
1.26e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 525 KRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASGLTIDDLNLSETFSHE--NKIEGRKLNFMSLNN 602
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEleEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 603 -MNETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDsdvkggetsliIPSLE 681
Cdd:TIGR02168 296 eISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE-----------LEELE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 682 RLVNAMESKNAEgifdaslhLKAQVDQLTGRNEELRQELRQSRKEAVNYSQQLVKANLKIDHLEKETDLLRQSAGSNVVY 761
Cdd:TIGR02168 365 AELEELESRLEE--------LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 762 K---GIDLPDGIAPSSAYIINSQNEYLIHLLQELDNKEKKLKHLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKDIWKTds 838
Cdd:TIGR02168 437 ElqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-- 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 839 emirEEKRKLEDQAEQDAVKV-KEYNNLLSALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQyTTLVEMERHLRKENGK 917
Cdd:TIGR02168 515 ----QSGLSGILGVLSELISVdEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRV-TFLPLDSIKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 918 HRNdviaMEAEVTEKLGSLQRFKEMAIFKIAALQKVIDNSVSLSELELANKQYNELTTKYRDI----------------- 980
Cdd:TIGR02168 590 DRE----ILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVtldgdlvrpggvitggs 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 981 LQKDNMLVQRTSNLEHLECENASLKEQMEAISKELEITKEKLHTIEQAWEQETKLGNDsnmdkakksmtnsdivsISKKI 1060
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE-----------------LSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1061 TVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFTELTKiNLDAQKVEQMLRDELADSVTKAVSdADRQRIL 1140
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-ELAEAEAEIEELEAQIEQLKEELK-ALREALD 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1141 ELEKSEVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQ-SDEKALIAKLHQHVVSLQISEATAL 1219
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEiEELEELIEELESELEALLNERASLE 886
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1220 GKLESVTSKLQKMEAYNLRLEQKLDEKEQALYYARL---EGRNRAKHLRQTIQSLRRQFS 1276
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSELRRELEELREklaQLELRLEGLEVRIDNLQERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1634-1915 |
4.64e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 4.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1634 QDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQK 1713
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1714 EANSRAptttmrnlvDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAvtsqKEANLNVQQVVERHTRELKSQIE 1793
Cdd:COG1196 313 ELEERL---------EELEEELAELEEELEELEEELEELEEELEEAEEELEEA----EAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1794 DLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQS 1873
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 163965444 1874 LIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRWEE 1915
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1558-2429 |
5.83e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 5.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1558 KKYQHLLEKAREEQREIVKKHEEDLHVLHHKLEQQAdNSLNKFRQTAQDLLKQSPAPVPTNKHFIRlaEMEQTVAEQDDS 1637
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLRLEELREELEELQEEL-KEAEEELEELTAELQELEEKLEELRLEVS--ELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1638 LSSLLTKLKkvskDLEKQKEITELKVREFENTKLRLQEthasEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANS 1717
Cdd:TIGR02168 290 LYALANEIS----RLEQQKQILRERLANLERQLEELEA----QLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1718 RAptttmRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQvverhtreLKSQIEDLNE 1797
Cdd:TIGR02168 362 EL-----EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER--------LQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1798 NLLKLKeaLKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDE 1877
Cdd:TIGR02168 429 KLEEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1878 LQKKVKKLESQLERKVDDVdikpvkeksskEELIRWEEGkkWQTKVE-GLRNRL-------KEKEGEAHGLAKQLNTLKE 1949
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVL-----------SELISVDEG--YEAAIEaALGGRLqavvvenLNAAKKAIAFLKQNELGRV 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1950 LFAKADKEKLT-LQKKLKTTGMTVDQVLGVralesekeLEELKKKNLDLENDILYMrTQQALPRDSVVEDLHLQNKY-LQ 2027
Cdd:TIGR02168 574 TFLPLDSIKGTeIQGNDREILKNIEGFLGV--------AKDLVKFDPKLRKALSYL-LGGVLVVDDLDNALELAKKLrPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2028 EKLHTLEKKLSKEKYSQSLTSEIESddhcQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKG 2107
Cdd:TIGR02168 645 YRIVTLDGDLVRPGGVITGGSAKTN----SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2108 KLELERKLGQVR-GAGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKmATIEEENRNLKAELEKLKahfg 2186
Cdd:TIGR02168 721 LEELSRQISALRkDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL-AEAEAEIEELEAQIEQLK---- 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2187 rqlsmqfESKNKGTEKIVAENERLRKelkkeieasekLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKs 2266
Cdd:TIGR02168 796 -------EELKALREALDELRAELTL-----------LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES- 856
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2267 wksivvsrvYETKMKELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEilknvpEGAETEQELIRELQLLR 2346
Cdd:TIGR02168 857 ---------LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR------ELESKRSELRRELEELR 921
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2347 LANNQMDKERAELIHQIEINKDQTRADSSIPdsdqlkekINDLETQLRKLELEKQHSKEEVKKLKKELENFDPSFFEEIE 2426
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEEYSLT--------LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIE 993
|
...
gi 163965444 2427 DLK 2429
Cdd:TIGR02168 994 EYE 996
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
87-563 |
3.81e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.36 E-value: 3.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 87 LKTKVMKLENELEMAQQSAGGRDTRFLRDEIRQLEKQLEQKDREL----EDMEKELDKEKKVNEQLALRNEEAENENSKL 162
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEItgltEKASSARSQANSIQSQLEIIQEQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 163 RRENKRLKKKNEQLRQDIIDYQKQIDSQKESLlsrrgedsdyRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKN 242
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKIEEL----------EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 243 LEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEE----DDPVMMAVNAKVEEWKLIlS 318
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEcqgqMERQMAAIQGKNESLEKV-S 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 319 SKDDEIIEYQQMLQSLRGKL--KNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNElqkdk 396
Cdd:pfam15921 465 SLTAQLESTKEMLRKVVEELtaKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE----- 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 397 gtsnfyqQTHYMKIHSKVQILEEKTKEAERIAELAeadarekdKELVEALKRLkdyeSGVYGLEDAVIEIKNCKAQIKIR 476
Cdd:pfam15921 540 -------GDHLRNVQTECEALKLQMAEKDKVIEIL--------RQQIENMTQL----VGQHGRTAGAMQVEKAQLEKEIN 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 477 DGEMEVltKEINKLEMKINDILDENEALRERAGLEPKTMIDL--TEFRNSKRLKQQQYRAENQV--LLKEIESLEEERLD 552
Cdd:pfam15921 601 DRRLEL--QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAgsERLRAVKDIKQERDQLLNEVktSRNELNSLSEDYEV 678
|
490
....*....|.
gi 163965444 553 LKRKIRQMAQE 563
Cdd:pfam15921 679 LKRNFRNKSEE 689
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-658 |
4.47e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 4.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 21 QEELADKLLISLSKVEVNELKNEDQENMIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFEnQLKTKVMKLENELEM 100
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-EAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 101 AQQsaggrDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLRQDI 180
Cdd:COG1196 300 LEQ-----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 181 IDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRM 260
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 261 KALVHQSDAVMDQIKKENEHYRLQVRELTDLL---KAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEyqQMLQSLRGK 337
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELaeaAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 338 LKNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQytKEMEKNTFIiedlknELQKDKGTSNFYQQTHYMKIHSKVQIL 417
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA--AKAGRATFL------PLDKIRARAALAAALARGAIGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 418 EEKTKEAE-----RIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEM 492
Cdd:COG1196 605 ASDLREADaryyvLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 493 KINDILDENEALRERAGLEpktmidltefRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASG 572
Cdd:COG1196 685 AERLAEEELELEEALLAEE----------EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 573 LTIDDLNLSETFSHENKIEGR-----KLNFMSLNNMNETQSKNEFLSRELAekekDLERSRTviakfqsKLKELVEEnkq 647
Cdd:COG1196 755 ELPEPPDLEELERELERLEREiealgPVNLLAIEEYEELEERYDFLSEQRE----DLEEARE-------TLEEAIEE--- 820
|
650
....*....|.
gi 163965444 648 LEEGMKEILQA 658
Cdd:COG1196 821 IDRETRERFLE 831
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-466 |
5.59e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 5.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 75 KAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEE 154
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEE------------LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 155 AENENSKLRRENKRLKKKNEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEV 234
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 235 QNQEMRKNLEESVQEMEKMTDEynrmkalvhqsdavMDQIKKENEHYRLQVRELTDLLKAKDEEddpvMMAVNAKVEEWK 314
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSED--------------IESLAAEIEELEELIEELESELEALLNE----RASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 315 LILSSKDDEIIEYQQMLQSLRGKLKNAQLDADKSNiMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQK 394
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLE-LRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 163965444 395 dkgtsnfyqqthymkihsKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEI 466
Cdd:TIGR02168 973 ------------------RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1786-2452 |
6.08e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 6.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1786 RELKSQIEDLNENLLKLKEALKTSKNKENSL------ADDLNELNNELQKKQKAYnkILREKDGIDQENDELRRQIKRLS 1859
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLerqaekAERYKELKAELRELELAL--LVLRLEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1860 SGLQS-KTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKpVKEKSSKEELIRweegkKWQTKVEGLRNRLKEKEGEAH 1938
Cdd:TIGR02168 253 EELEElTAELQELEEKLEELRLEVSELEEEIEELQKELYAL-ANEISRLEQQKQ-----ILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1939 GLAKQLNTLKELFAKADKEKLTLQKKLKTtgmtvdqvLGVRALESEKELEELKKKNLDLENDILYMRTQQALPRDSVvED 2018
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELES--------LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI-AS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2019 LHLQNKYLQEKLHTLEKKLSKEKYSQSL----TSEIESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQV 2094
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEEllkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2095 KDLKEMCEFLKKGKLELERKLGQVRGAGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEENRN- 2173
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNa 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2174 LKAELEKLKAHFGRQLSMQFESKNKGTEKIVAENERLRKE------LKKEIEASEKLRIAKNNLeLVNDKMAAQLE---E 2244
Cdd:TIGR02168 558 AKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIegflgvAKDLVKFDPKLRKALSYL-LGGVLVVDDLDnalE 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2245 TGKRLQFAE----------SRAPQLEGADSKSWKSIVVSRV----YETKMKELESDIAKKNQSITDLKQLVREATEREQK 2310
Cdd:TIGR02168 637 LAKKLRPGYrivtldgdlvRPGGVITGGSAKTNSSILERRReieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2311 AKKYTEDLEQQIEILKNVPEGAETEQELIRE-LQLLRLANNQMDKERAELIHQIEINKDQTRADSSipDSDQLKEKINDL 2389
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEErIAQLSKELTELEAEIEELEERLEEAEEELAEAEA--EIEELEAQIEQL 794
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 163965444 2390 ETQLRKL-----ELEKQHSKEEVKKLKKElenfdpsffEEIEDLKYNYKEEVKKNILLEEKLKKLSEQ 2452
Cdd:TIGR02168 795 KEELKALrealdELRAELTLLNEEAANLR---------ERLESLERRIAATERRLEDLEEQIEELSED 853
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
54-192 |
7.46e-08 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 57.95 E-value: 7.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 54 ITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfLRDEIRQLEKQLEQKDRELED 133
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER------------LEAEVEELEAELEEKDERIER 445
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 163965444 134 MEKELDKEKKVNEQLALRNEEAenenSKLRRENKRLKKKNEQLRQDIIDYQKQIDSQKE 192
Cdd:COG2433 446 LERELSEARSEERREIRKDREI----SRLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
114-500 |
1.16e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 114 RDEIRQLEKQLEQKDRELEDMEKELDkekkvneqlalrneeaenensKLRRENKRLKKKNEQLRQDIIDYQKQIDSQKES 193
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALA---------------------ELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 194 LLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEynrMKALVHQSDAVMDQ 273
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE---LKALREALDELRAE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 274 IKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEwKLILSSKDDEIIEYQQMLQSLRGKLKNA--QLDADKSNIM 351
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL-SEDIESLAAEIEELEELIEELESELEALlnERASLEEALA 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 352 ALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQthymKIHSKVQILEEKTKEAERIAELA 431
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE----RLSEEYSLTLEEAEALENKIEDD 966
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 163965444 432 EADAREKDKELVEALKRLkdyesGVYGLeDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDE 500
Cdd:TIGR02168 967 EEEARRRLKRLENKIKEL-----GPVNL-AAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE 1029
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
237-975 |
6.50e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 6.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 237 QEMRKNLEESVQEMEKMTD---EYNR-MKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEE 312
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDilnELERqLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 313 wkliLSSKDDEIIEYQQMLQSLRGKL--KNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKN 390
Cdd:TIGR02168 255 ----LEELTAELQELEEKLEELRLEVseLEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 391 ELQKDKgtsnfyqqthymkihSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCK 470
Cdd:TIGR02168 331 KLDELA---------------EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 471 AQIKirdGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQV-----LLKEIES 545
Cdd:TIGR02168 396 ASLN---NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEealeeLREELEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 546 LEEERLDLKRKIRQMAQE---------------RGKR---NAASGLTIDDLNLSETFSHENKIE-------GRKLNFMSL 600
Cdd:TIGR02168 473 AEQALDAAERELAQLQARldslerlqenlegfsEGVKallKNQSGLSGILGVLSELISVDEGYEaaieaalGGRLQAVVV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 601 NNMNETQSKNEFLSRELAEK--------------EKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEIL---------- 656
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRvtflpldsikgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddld 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 657 QAIKDMPKdsdvKGGETSLIIPSLERL-----VNAMESKNAEGIFD---ASLHLKAQVDQLTGRNEELRQELRQSRKEAV 728
Cdd:TIGR02168 633 NALELAKK----LRPGYRIVTLDGDLVrpggvITGGSAKTNSSILErrrEIEELEEKIEELEEKIAELEKALAELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 729 NYSQQLVKANLKIDHLEKETDLLRQSAG-----SNVVYKGIDLPDGIAPSSAYIINSQNEYLIHLLQELDNKEKKLKHLE 803
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLArleaeVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 804 DSLEDYNRKFAVIRHQQSLLYKEY----------LSEKDIWKTDSEMIREEKRKLEDQAEQDAVKVKEYNNLLSALQMDS 873
Cdd:TIGR02168 789 AQIEQLKEELKALREALDELRAELtllneeaanlRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 874 NEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEMERHLRKENGKHRNDVIameaEVTEKLGSLQRFKEMAIFKIAALQKV 953
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE----ELREKLAQLELRLEGLEVRIDNLQER 944
|
810 820
....*....|....*....|..
gi 163965444 954 IDNSVSLsELELANKQYNELTT 975
Cdd:TIGR02168 945 LSEEYSL-TLEEAEALENKIED 965
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1642-2402 |
7.57e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 7.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1642 LTKLKKVSKDLEKQKEitelkvrefentKLRLQETHASEVKKVKAEVEDLRHALAQAHKdsQSLKSELQAQKEAnsrapt 1721
Cdd:TIGR02168 188 LDRLEDILNELERQLK------------SLERQAEKAERYKELKAELRELELALLVLRL--EELREELEELQEE------ 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1722 ttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANlNVQQVVERHTRELKSQIEDLNENLLK 1801
Cdd:TIGR02168 248 ------LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA-NEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1802 LKEALKTSKNKENSLADDLNELNNELQKKQKaynkilrEKDGIDQENDELRRQIKRLSSGLQSK-TLIDNKQSLIDELQK 1880
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKE-------ELESLEAELEELEAELEELESRLEELeEQLETLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1881 KVKKLESQLERKVDDVDIKPVKEKSSKEElIRWEEGKKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLT 1960
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQE-IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1961 LQKKLKTTGMTVDQvLGVRALESEKELEELKKKNLDLENdILYMRTQQALPRDSVVEDLHLQNKYLQEKLHTLEKKLske 2040
Cdd:TIGR02168 473 AEQALDAAERELAQ-LQARLDSLERLQENLEGFSEGVKA-LLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRL--- 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2041 kysQSLTseIESDDHCQKEQELQKENLKLSSENIELkfqleqankdlprlknqvkDLKEMCEFLKKGKLELERKLGQVRG 2120
Cdd:TIGR02168 548 ---QAVV--VENLNAAKKAIAFLKQNELGRVTFLPL-------------------DSIKGTEIQGNDREILKNIEGFLGV 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2121 AGRSGKTIPELEKTIGLM---KKVVEKVQRENEQLKKasgiltsekmatIEEENRNLKAELEKLKAHFgrQLSMQFESKN 2197
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYLlggVLVVDDLDNALELAKK------------LRPGYRIVTLDGDLVRPGG--VITGGSAKTN 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2198 KGTEKIVAENERLRKELKkeiEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYE 2277
Cdd:TIGR02168 670 SSILERRREIEELEEKIE---ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2278 TKMKELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKNVPEGAETE--------QELIRELQLLRLAN 2349
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldelraelTLLNEEAANLRERL 826
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 163965444 2350 NQMDKERAELIHQIEINKDQTRADSSipDSDQLKEKINDLETQLRKLELEKQH 2402
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSE--DIESLAAEIEELEELIEELESELEA 877
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1480-2342 |
8.16e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 8.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1480 EKLKEKESALRLAEQNILSRDKVINELRLRLPaTADREKLIAELERKELEPKSHHTMKIAHQTIANMQARLNHKEEVLKK 1559
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLK-SLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1560 YQHLLEKAREEQREIVKKHEEdLHVLHHKLEQQAdnslnkfrQTAQDLLKQspapvptnkHFIRLAEMEQTVAEQDDSLS 1639
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEE-LRLEVSELEEEI--------EELQKELYA---------LANEISRLEQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1640 SLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQEthasevkkVKAEVEDLRHALAQAHKDSQSLKSELQAQKEAnsra 1719
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEE--------LKEELESLEAELEELEAELEELESRLEELEEQ---- 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1720 ptttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAE--ERIIAVTSQKEANLNVQQVVERHTR---------EL 1788
Cdd:TIGR02168 381 --------LETLRSKVAQLELQIASLNNEIERLEARLERLEDrrERLQQEIEELLKKLEEAELKELQAEleeleeeleEL 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1789 KSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNE---LQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQ-- 1863
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARldsLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvd 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1864 -------SKTLIDNKQSLIDELQKKVKK-LESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEG 1935
Cdd:TIGR02168 533 egyeaaiEAALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDP 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1936 EAHG--------------LAKQLNTLKEL-----------------------FAKADKEKLTLQKKLKTTGMTVDQvLGV 1978
Cdd:TIGR02168 613 KLRKalsyllggvlvvddLDNALELAKKLrpgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIEE-LEE 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1979 RALESEKELEELKKKNLDLENDilymrtqqalprdsvVEDLHLQNKYLQEKLHTLEKKLSK-EKYSQSLTSEIESDDHCQ 2057
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEE---------------LEQLRKELEELSRQISALRKDLARlEAEVEQLEERIAQLSKEL 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2058 KEQELQKEnlKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRG-AGRSGKTIPELEKTIG 2136
Cdd:TIGR02168 757 TELEAEIE--ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeAANLRERLESLERRIA 834
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2137 LMKKVVEKVQRENEQLKKASGILTSEkMATIEEENRNLKAELEKLKAHFgRQLSMQFESKNKGTEKIVAENERLRKELKK 2216
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAE-IEELEELIEELESELEALLNER-ASLEEALALLRSELEELSEELRELESKRSE 912
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2217 EIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGAdskswksivVSRVYETKMKELESDIAKKNQSITD 2296
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA---------LENKIEDDEEEARRRLKRLENKIKE 983
|
890 900 910 920
....*....|....*....|....*....|....*....|....*.
gi 163965444 2297 LKQLVREATEREQKAKKYTEDLEQQIEILKnvpEGAETEQELIREL 2342
Cdd:TIGR02168 984 LGPVNLAAIEEYEELKERYDFLTAQKEDLT---EAKETLEEAIEEI 1026
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1739-2387 |
1.42e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1739 EKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQvvERHTRELKSQIEDLNENLLKLKEALKTS-----KNKE 1813
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE--ARKADELKKAEEKKKADEAKKAEEKKKAdeakkKAEE 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1814 NSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSliDELQKKVKKLESQLE--R 1891
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK--EEAKKKADAAKKKAEekK 1391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1892 KVDDVDIKPVKEKSSKEELIRWEEGKKwqtkveglrnrlkeKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTTGMT 1971
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKK--------------KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1972 VDQVLGVRALESEKELEELKKKNLDLENDILYMRTQQALPRDSVVEDLHLQNKYLQEKLHTLEKKLSKE---KYSQSLTS 2048
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEakkAEEAKKAD 1537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2049 EIESDDHCQKEQELQK-ENLKLSSE--NIELKFQLEQANKDLPRLKNQVKDLKE--MCEFLKKGKLELERKLGQVRGAGR 2123
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKaEELKKAEEkkKAEEAKKAEEDKNMALRKAEEAKKAEEarIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2124 SGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEENRNLKAELEKLKAhfgRQLSMQFESKNKGTEKI 2203
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA---EEAKKAEEDEKKAAEAL 1694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2204 VAENERLRK-ELKKEIEASEKlriaknnlelvndKMAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYETKMKE 2282
Cdd:PTZ00121 1695 KKEAEEAKKaEELKKKEAEEK-------------KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2283 LESDIAKKNQSITDLKQLV------REATEREQKAKKYTEDLEQQIEIL-----KNVPEGAETEQELIRELQLLRLANNq 2351
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVieeeldEEDEKRRMEVDKKIKDIFDNFANIieggkEGNLVINDSKEMEDSAIKEVADSKN- 1840
|
650 660 670
....*....|....*....|....*....|....*.
gi 163965444 2352 MDKERAELIHQIEINKDQTRADSSIPDSDQLKEKIN 2387
Cdd:PTZ00121 1841 MQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDL 1876
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1351-1891 |
1.66e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1351 KIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELERQLDIFDHQQNEIL 1430
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1431 SAAQKFEDSTGSMpdpslplpNQLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRL 1510
Cdd:COG1196 348 EAEEELEEAEAEL--------AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1511 PATADREKLIAELERKELEPKSHHTMKIAHQTIANMQARLNHKEEVLKKYQhlLEKAREEQREIVKKHEEDLHVLHHKLE 1590
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE--EAALLEAALAELLEELAEAAARLLLLL 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1591 QQADNSLNKFRQTAQDLLKQSPAPVPtnKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKvrefENTK 1670
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLK----AAKA 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1671 LRLQETHASEVKKVKAEVEDlrHALAQAHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKqqKALSRALL 1750
Cdd:COG1196 572 GRATFLPLDKIRARAALAAA--LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA--VTLAGRLR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1751 ELRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKK 1830
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 163965444 1831 QKAYNKILREKDGIDQENDELRRQIKRLSSGLQSktlidnkqslIDELQKKVKKLESQLER 1891
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPD----------LEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
968-1858 |
1.87e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 968 KQYNELTTKYRDiLQKDNMLVQRTSNLEHLEcenaSLKEQMEAISKELEITKEKLHTIEQAWEqETKLGnDSNMDKAKKS 1047
Cdd:TIGR02168 213 ERYKELKAELRE-LELALLVLRLEELREELE----ELQEELKEAEEELEELTAELQELEEKLE-ELRLE-VSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1048 MTnSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFTELTKINLDAQKVEQMLRDELadsv 1127
Cdd:TIGR02168 286 LQ-KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL---- 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1128 tkavsDADRQRILELEKSEVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESL---RTQLLDFQAQSDEKALIAKL 1204
Cdd:TIGR02168 361 -----EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLedrRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1205 HQHVVSLQISEATalgkLESVTSKLQKMEAYNLRLEQKLDEKEQALYYARlEGRNRAKHLRQTIQSLRRQFSG-----AL 1279
Cdd:TIGR02168 436 KELQAELEELEEE----LEELQEELERLEEALEELREELEEAEQALDAAE-RELAQLQARLDSLERLQENLEGfsegvKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1280 PLAQQEKFSKTMIQLQnDKLKIMQE----MKNSQQEHRN---MENKTlelelklkGLEELISTLKDARGAQKVINWHVKI 1352
Cdd:TIGR02168 511 LLKNQSGLSGILGVLS-ELISVDEGyeaaIEAALGGRLQavvVENLN--------AAKKAIAFLKQNELGRVTFLPLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1353 EELRLQelKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQReveleRQLDifdhQQNEILSA 1432
Cdd:TIGR02168 582 KGTEIQ--GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELA-----KKLR----PGYRIVTL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1433 AQKFEDSTGSMPDPSLPLPNQLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLpa 1512
Cdd:TIGR02168 651 DGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI-- 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1513 tADREKLIAELERKelepkshhtmkiaHQTIANMQARLNHKEEVLKKYQHLLEKAREEQREIVKKHEEDLhvlhHKLEQQ 1592
Cdd:TIGR02168 729 -SALRKDLARLEAE-------------VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI----EELEAQ 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1593 ADNSLNKFRQTAQDLLKQSPAPVPTNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFEntklR 1672
Cdd:TIGR02168 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE----E 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1673 LQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANSRAptttmRNLVDRLKSQLA-LKEKQQKALSRaLLE 1751
Cdd:TIGR02168 867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL-----RRELEELREKLAqLELRLEGLEVR-IDN 940
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1752 LRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNE-NLLKLKEALKTSKNKENSLA--DDLNELNNELQ 1828
Cdd:TIGR02168 941 LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPvNLAAIEEYEELKERYDFLTAqkEDLTEAKETLE 1020
|
890 900 910
....*....|....*....|....*....|..
gi 163965444 1829 KKQKAYNKILRE--KDGIDQENDELRRQIKRL 1858
Cdd:TIGR02168 1021 EAIEEIDREARErfKDTFDQVNENFQRVFPKL 1052
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1636-1888 |
2.12e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.38 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1636 DSLSSLLTKLKKvSKDLEKQKEITelkVREFENTKLRLQEThasevKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEA 1715
Cdd:PRK11281 39 ADVQAQLDALNK-QKLLEAEDKLV---QQDLEQTLALLDKI-----DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1716 NSRAPTTTMRNL-VDRLKSQLALKEKQQKALSRALLELRSEMTAA--AEERiiavtSQKEANLNVQQvverhTRELKSQI 1792
Cdd:PRK11281 110 NDEETRETLSTLsLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLqtQPER-----AQAALYANSQR-----LQQIRNLL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1793 EDLNENLLKLKEALKTSKNKENSLADdlneLNNELQKKQKAYNKILreKDGIDQENDELRRQIKRLSSGLQS-KTLIDNK 1871
Cdd:PRK11281 180 KGGKVGGKALRPSQRVLLQAEQALLN----AQNDLQRKSLEGNTQL--QDLLQKQRDYLTARIQRLEHQLQLlQEAINSK 253
|
250
....*....|....*..
gi 163965444 1872 QslIDELQKKVKKLESQ 1888
Cdd:PRK11281 254 R--LTLSEKTVQEAQSQ 268
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1624-2400 |
2.59e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1624 LAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITEL--KVREFENTKL--RLQETHAS-------------EVKKVKA 1686
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALlkEKREYEGYELlkEKEALERQkeaierqlasleeELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1687 EVEDLRHALAQAHKDSQSLKSELQAQKEANSRAPTTTMRNL---VDRLKSQLALKEKQQKALSRALLELRSEMTAAAEER 1763
Cdd:TIGR02169 259 EISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELeaeIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1764 IIAVTSQKEANLNVQQVVERHtRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDG 1843
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEY-AELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1844 IDQENDELRRQIKRLSSGLqsKTLIDNKQSLIDE----------LQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRW 1913
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKI--NELEEEKEDKALEikkqewkleqLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1914 E-EGKKWQTKVEGLRNR---LKEKEGEAHGLAKQLNTLKELFAKA-------------------DKEKLTLQKKLKTTGM 1970
Cdd:TIGR02169 496 EaQARASEERVRGGRAVeevLKASIQGVHGTVAQLGSVGERYATAievaagnrlnnvvveddavAKEAIELLKRRKAGRA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1971 TVDQVLGVRALESEKELEELKKKNLDLENDILYMRT-----QQALPRDSVVEDLHLQNKYL-QEKLHTLEKKLSKEkySQ 2044
Cdd:TIGR02169 576 TFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKyepafKYVFGDTLVVEDIEAARRLMgKYRMVTLEGELFEK--SG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2045 SLTSEIESDDHCQKEQELQKENLKLSSENIE-LKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRG-AG 2122
Cdd:TIGR02169 654 AMTGGSRAPRGGILFSRSEPAELQRLRERLEgLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQeEE 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2123 RSGKTIPELEKTIGLMKKVVEKVQRENEQLKKasgiltseKMATIEEENRNLKAELEKLKAHFGRQLSMQFESKNKGTEK 2202
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEA--------RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEE 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2203 IVAENERLRKELKKEIEAS----EKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEgadskswksivvsrvyeT 2278
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLtlekEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE-----------------E 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2279 KMKELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILK-NVPEGAETEQELIRELQLLRLANNQMDKERA 2357
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRkRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 163965444 2358 EL--IHQIEINKDQTRADSS---------IPDSDQLKEKINDLETQLRKLELEK 2400
Cdd:TIGR02169 949 EElsLEDVQAELQRVEEEIRalepvnmlaIQEYEEVLKRLDELKEKRAKLEEER 1002
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
130-178 |
2.59e-06 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 52.14 E-value: 2.59e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 163965444 130 ELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLRQ 178
Cdd:PRK03992 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
789-1697 |
3.60e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 3.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 789 LQELDNKEKKLKHLEDSLEDYNRKFAVIRHQ--QSLLYKEYLSE-----KDIWKTDSEMIREEKRKLEDQAEQDAVKVKE 861
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQaeKAERYKELKAElreleLALLVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 862 YNNLLSALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEMERHLRKEngkhRNDVIAMEAEVTEKLGSLQRFKE 941
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER----LANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 942 MAIFKIAALQKVIDnsVSLSELELANKQYNELTTKYRDILQKdnmLVQRTSNLEHLECENASLKEQMEAISKELEITKEK 1021
Cdd:TIGR02168 334 ELAEELAELEEKLE--ELKEELESLEAELEELEAELEELESR---LEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1022 LHTIEQAWE--QETKLGNDSNMDKAKKSMTNSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELE 1099
Cdd:TIGR02168 409 LERLEDRRErlQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1100 TKFTELTKINLDAQKVEQMLRDELADsvtKAVSDADRQRILELEKSEVELKVEVSK---------LREISDIAKRQVDFL 1170
Cdd:TIGR02168 489 ARLDSLERLQENLEGFSEGVKALLKN---QSGLSGILGVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1171 nsqqqsreKEVESLRTQLLDFQAQSDekALIAKLHQHVVSLQISEATALGKLESVTSKLQKMEAYNLRLEQKLDEKEQAL 1250
Cdd:TIGR02168 566 --------KQNELGRVTFLPLDSIKG--TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1251 YYARLEGRnrakhlRQTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDklkimQEMKNSQQEHRNMENKTLELELKLKGLE 1330
Cdd:TIGR02168 636 ELAKKLRP------GYRIVTLDGDLVRPGGVITGGSAKTNSSILERR-----REIEELEEKIEELEEKIAELEKALAELR 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1331 ELISTLKDArgaqkvinwhvkIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQ 1410
Cdd:TIGR02168 705 KELEELEEE------------LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1411 REVELERQLDIFDHQQNEIlsaaqkfedstgsmpdpslplpNQLEIALRKIKENIQvilKTQATCKSLEEKLKEKESALR 1490
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQI----------------------EQLKEELKALREALD---ELRAELTLLNEEAANLRERLE 827
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1491 LAEQNILSRDKVINELRLRLP-ATADREKLIAELERKELEPKSHhtmkiaHQTIANMQARLNHKEEVLKKYQHLLEKARE 1569
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEeLSEDIESLAAEIEELEELIEEL------ESELEALLNERASLEEALALLRSELEELSE 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1570 EQREI---VKKHEEDLHVLHHKLEqQADNSLNKFRQTAQDLLKQSpapvpTNKHFIRLAEMEQTVAEQDDSLSSLLTKLK 1646
Cdd:TIGR02168 902 ELRELeskRSELRRELEELREKLA-QLELRLEGLEVRIDNLQERL-----SEEYSLTLEEAEALENKIEDDEEEARRRLK 975
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|.
gi 163965444 1647 KVSKDLEKQKEITELKVREFENTKLRLQEthasevkkVKAEVEDLRHALAQ 1697
Cdd:TIGR02168 976 RLENKIKELGPVNLAAIEEYEELKERYDF--------LTAQKEDLTEAKET 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
113-277 |
9.63e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 9.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 113 LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLRQDIIDYQKQIDSQKE 192
Cdd:TIGR02169 334 LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 193 SLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMD 272
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
|
....*
gi 163965444 273 QIKKE 277
Cdd:TIGR02169 494 EAEAQ 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1731-2397 |
1.10e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1731 LKSQLALKEKQQKALSRALlELRSEmtaaAEERiiavtsQKEANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSK 1810
Cdd:COG1196 198 LERQLEPLERQAEKAERYR-ELKEE----LKEL------EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1811 NKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLssglqsktlidnkQSLIDELQKKVKKLESQLE 1890
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL-------------EERLEELEEELAELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1891 RKvddvdikpvkekssKEELIRWEEgkkwqtkveglrnRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKklkttgm 1970
Cdd:COG1196 334 EL--------------EEELEELEE-------------ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE------- 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1971 tvdqvlgvRALESEKELEELKKKNLDLENDILYMRTQQAlprdsvvEDLHLQNKYLQEKlhtlekklsKEKYSQSLTSEI 2050
Cdd:COG1196 380 --------ELEELAEELLEALRAAAELAAQLEELEEAEE-------ALLERLERLEEEL---------EELEEALAELEE 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2051 ESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRGAGRSGKTIPE 2130
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2131 LEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEENRNLKAELEKLKAHFGRQLSmqFESKNKGTEKIVAENERL 2210
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT--FLPLDKIRARAALAAALA 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2211 RKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKswKSIVVSRVYETKMKELESDIAKK 2290
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE--VTLEGEGGSAGGSLTGGSRRELL 671
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2291 NQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKnvpEGAETEQELIRELQLLRLANNQMDKERAELIHQIEINKDQT 2370
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEER---ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
650 660 670
....*....|....*....|....*....|..
gi 163965444 2371 RAD-----SSIPDSDQLKEKINDLETQLRKLE 2397
Cdd:COG1196 749 EEEaleelPEPPDLEELERELERLEREIEALG 780
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-429 |
1.22e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 16 DDLPRQEELadKLLISLSKVEVNELKNEDQENMIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLE 95
Cdd:PTZ00121 1549 DELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 96 NELEMaqqsaggrdtrflRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQ 175
Cdd:PTZ00121 1627 KAEEE-------------KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 176 LRQDIIDYQKqidsqKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKievQNQEMRKNLEESVQEMEKMTD 255
Cdd:PTZ00121 1694 LKKEAEEAKK-----AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK---KAEEAKKDEEEKKKIAHLKKE 1765
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 256 EYNRMKALVHQSDAVMDQ-IKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEYQQMlqsL 334
Cdd:PTZ00121 1766 EEKKAEEIRKEKEAVIEEeLDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM---Q 1842
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 335 RGKLKNAQLDADKSNIMALKQGIQERDSQIKmlTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNfYQQTHYMKIHSKV 414
Cdd:PTZ00121 1843 LEEADAFEKHKFNKNNENGEDGNKEADFNKE--KDLKEDDEEEIEEADEIEKIDKDDIEREIPNNN-MAGKNNDIIDDKL 1919
|
410
....*....|....*
gi 163965444 415 QILEEKTKEAERIAE 429
Cdd:PTZ00121 1920 DKDEYIKRDAEETRE 1934
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1559-1963 |
1.27e-05 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 50.53 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1559 KYQHLLEKAREEQREIVKKHEEDLHVLHHKLEQQADnslnKFRQTAQDLLKQSPAPVPTNKHFIRLAEMEQTVA------ 1632
Cdd:pfam09731 31 NFRDFFEEYIPYGEEVVLYALGEDPPLAPKPKTFRP----LQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEvaeeek 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1633 -EQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQA 1711
Cdd:pfam09731 107 eATKDAAEAKAQLPKSEQEKEKALEEVLKEAISKAESATAVAKEAKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1712 QKEANSRAPTTTM----RNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVVerhtRE 1787
Cdd:pfam09731 187 KAEALAEKLKEVInlakQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQ----QE 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1788 LKSQIEDLNENLlklKEALKTSKNKENSLAD----DLNELNNELQKKQKAYNKilREKDGIDQENDELRRQIKRLSSGLQ 1863
Cdd:pfam09731 263 LVSIFPDIIPVL---KEDNLLSNDDLNSLIAhahrEIDQLSKKLAELKKREEK--HIERALEKQKEELDKLAEELSARLE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1864 SKTLIDNKQsLIDELQKKV--------KKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEG 1935
Cdd:pfam09731 338 EVRAADEAQ-LRLEFEREReeiresyeEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLQDIKEKVEEERAGRLLKLN 416
|
410 420
....*....|....*....|....*...
gi 163965444 1936 EAHGLAKQLNTLKELFAKADKEKLTLQK 1963
Cdd:pfam09731 417 ELLANLKGLEKATSSHSEVEDENRKAQQ 444
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
86-386 |
1.36e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 86 QLKTKVMKLENELEMAQQSAGGRDTRF--LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLR 163
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLdeLSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 164 RENKRLKKKNEQLRQDIIDYQKQI-------------------DSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQT 224
Cdd:TIGR02169 758 SELKELEARIEELEEDLHKLEEALndlearlshsripeiqaelSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 225 LTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELT---DLLKAKDEEDDP 301
Cdd:TIGR02169 838 LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELErkiEELEAQIEKKRK 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 302 VMMAVNAKVEEWKLILSSKDD---EIIEYQQMLQSLrGKLKnAQLDADKSNIMALK----QGIQERDSQIKMLTEQVEQY 374
Cdd:TIGR02169 918 RLSELKAKLEALEEELSEIEDpkgEDEEIPEEELSL-EDVQ-AELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKR 995
|
330
....*....|..
gi 163965444 375 TKEMEKNTFIIE 386
Cdd:TIGR02169 996 AKLEEERKAILE 1007
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
436-657 |
1.49e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 436 REKDKELVEALkrlkdYESGVYGLEDAVIEIKNckaqikirdgemEVLTKEINKLeMKINDILDENEALRERAGLEPKTM 515
Cdd:PRK05771 15 KSYKDEVLEAL-----HELGVVHIEDLKEELSN------------ERLRKLRSLL-TKLSEALDKLRSYLPKLNPLREEK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 516 IDLTEFRNSKRLKQQQYRAENqvLLKEIESLEEERLDLKRKIRQMAQERG--KRNAASGLTIDDLNLSETFS------HE 587
Cdd:PRK05771 77 KKVSVKSLEELIKDVEEELEK--IEKEIKELEEEISELENEIKELEQEIErlEPWGNFDLDLSLLLGFKYVSvfvgtvPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 588 NKIEGRKLNFMSLNNMNETQSKN-------------EFLSRELAE---KEKDLERSRT---VIAKFQSKLKELVEENKQL 648
Cdd:PRK05771 155 DKLEELKLESDVENVEYISTDKGyvyvvvvvlkelsDEVEEELKKlgfERLELEEEGTpseLIREIKEELEEIEKERESL 234
|
....*....
gi 163965444 649 EEGMKEILQ 657
Cdd:PRK05771 235 LEELKELAK 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
115-288 |
2.13e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 115 DEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLRQDIIDYQKQIDSQKESL 194
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 195 LSRRGE-----DSDYRSQL---------------SKKNYELVQYL-----DEIQTLTEANEKIEVQNQEMRKNLEESVQE 249
Cdd:COG4942 100 EAQKEElaellRALYRLGRqpplalllspedfldAVRRLQYLKYLaparrEQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190
....*....|....*....|....*....|....*....
gi 163965444 250 MEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVREL 288
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAEL 218
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
113-298 |
2.20e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.44 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 113 LRDEIRQLEKQLEQKDRELEDMEKELD----KEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLRQDIIDYQKQID 188
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEelneEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 189 SQK--ESLLSrrGED-SDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVH 265
Cdd:COG3883 101 SVSylDVLLG--SESfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQA 178
|
170 180 190
....*....|....*....|....*....|...
gi 163965444 266 QSDAVMDQIKKENEHYRLQVRELTDLLKAKDEE 298
Cdd:COG3883 179 EQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
113-664 |
2.30e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 113 LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLR--QDIIDYQKQIDSQ 190
Cdd:PRK03918 212 ISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEelEEKVKELKELKEK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 191 KESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMR------KNLEESVQEMEKMTDEYNRMKALV 264
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEelkkklKELEKRLEELEERHELYEEAKAKK 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 265 HQsdavMDQIKKENEHYRLQ--VRELTDLLKAKDEEDDPVmMAVNAKVEEWKLILSSKDDEIIEyqqmLQSLRGK--LKN 340
Cdd:PRK03918 372 EE----LERLKKRLTGLTPEklEKELEELEKAKEEIEEEI-SKITARIGELKKEIKELKKAIEE----LKKAKGKcpVCG 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 341 AQLDADksnimalkqgiqERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQK-DKGTSNFYQQTHYMKIHSKVQILEE 419
Cdd:PRK03918 443 RELTEE------------HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRElEKVLKKESELIKLKELAEQLKELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 420 KTKeaeriaELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKaqikirdGEMEVLTKEINKLEMKINDILD 499
Cdd:PRK03918 511 KLK------KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELK-------KKLAELEKKLDELEEELAELLK 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 500 ENEALRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEErldlKRKIRQMAQERGKRNAASGLTIDDLN 579
Cdd:PRK03918 578 ELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEE----LDKAFEELAETEKRLEELRKELEELE 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 580 LSETFSHENKIEGRKLNfmslnnmnetqsknefLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAI 659
Cdd:PRK03918 654 KKYSEEEYEELREEYLE----------------LSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717
|
....*
gi 163965444 660 KDMPK 664
Cdd:PRK03918 718 KALER 722
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1369-2260 |
2.70e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1369 GKEEIKylnNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELERQLDIFDHQQNEILSAAQKFEDSTGSmpdpsl 1448
Cdd:pfam15921 72 GKEHIE---RVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQED------ 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1449 pLPNQLEIALRKIKeniqvilktqaTCKSL-EEKLKEKESALRLAEQNILSRDKVINELRLRLP--ATADREKL-----I 1520
Cdd:pfam15921 143 -LRNQLQNTVHELE-----------AAKCLkEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVdfEEASGKKIyehdsM 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1521 AELERKELEPKSHHTMKIAHQTIANMQARL--------NHKEEVLKKYQHLLEKAREEQREIVKKHEEDLHVLHHKlEQQ 1592
Cdd:pfam15921 211 STMHFRSLGSAISKILRELDTEISYLKGRIfpvedqleALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEK-ASS 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1593 ADNSLNKFRqtAQDLLKQSPAPVPTNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITelkvrefeNTKLR 1672
Cdd:pfam15921 290 ARSQANSIQ--SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLA--------NSELT 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1673 LQETHASEVKKVKAEVED-LRHALAQAHKDSQslksELQAQKEANSRAPTTTMRN--LVDRLKSQLALKEKQQKALSRAL 1749
Cdd:pfam15921 360 EARTERDQFSQESGNLDDqLQKLLADLHKREK----ELSLEKEQNKRLWDRDTGNsiTIDHLRRELDDRNMEVQRLEALL 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1750 LELRSEMTAAAEERIIAVTSQKEANLNVQQvverhtreLKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQK 1829
Cdd:pfam15921 436 KAMKSECQGQMERQMAAIQGKNESLEKVSS--------LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1830 KQKAynkilrekdgidqendelrrqikrlssglqsktlidnkqslIDELQKKVKKLESQLerkvdDVDIKPVKEKSSKEE 1909
Cdd:pfam15921 508 KERA-----------------------------------------IEATNAEITKLRSRV-----DLKLQELQHLKNEGD 541
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1910 LIRweegkKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADK-------EKLTLQKKLKTTGMTVdQVLGVRALE 1982
Cdd:pfam15921 542 HLR-----NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRtagamqvEKAQLEKEINDRRLEL-QEFKILKDK 615
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1983 SEKELEELKKKNLDLENDILYMrTQQALPRDSVVEDLHLQNKYLQEKLHTLEKKLSkekysqSLTseiesddhcqKEQEL 2062
Cdd:pfam15921 616 KDAKIRELEARVSDLELEKVKL-VNAGSERLRAVKDIKQERDQLLNEVKTSRNELN------SLS----------EDYEV 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2063 QKENLKLSSENIE-----LKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRGagrsgkTIPELEKTIGL 2137
Cdd:pfam15921 679 LKRNFRNKSEEMEtttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRG------QIDALQSKIQF 752
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2138 MKKVVEKVQRENEQLKKASGILtSEKMATIEEENRNLKAELEKLKAhfgrqlsmqfesknkgtekivaENERLRKELKke 2217
Cdd:pfam15921 753 LEEAMTNANKEKHFLKEEKNKL-SQELSTVATEKNKMAGELEVLRS----------------------QERRLKEKVA-- 807
|
890 900 910 920
....*....|....*....|....*....|....*....|...
gi 163965444 2218 ieaseklriaknNLELVNDKMAAQLEETGKRLQFAESRAPQLE 2260
Cdd:pfam15921 808 ------------NMEVALDKASLQFAECQDIIQRQEQESVRLK 838
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
992-1529 |
3.09e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 992 SNLEHLEcENASLKEQMEAISKELEITK--EKLHTIEQAWEQETKLGNDSNMDKAKKSMTNSDIVSISKKITVLEMKELN 1069
Cdd:COG1196 200 RQLEPLE-RQAEKAERYRELKEELKELEaeLLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1070 ERQRAEHCQKMYEHLRTSLKQME-------ERNFELETKFTELTKINLDAQKVEQMLRDELADSVTKAVSDADRQRILEL 1142
Cdd:COG1196 279 LELELEEAQAEEYELLAELARLEqdiarleERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1143 EKSEVELKvEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKALIAKLHQHVVSLQISEATALGKL 1222
Cdd:COG1196 359 ELAEAEEA-LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1223 ESVTSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRqfsgalpLAQQEKFSKTMIQLQNDKLKIM 1302
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE-------AAARLLLLLEAEADYEGFLEGV 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1303 QEMKNSQQ---------EHRNMENKTLELELKLKGLEELISTLKDARGAQKVINWHVKIEELRLQELKLNRELVKGKEEI 1373
Cdd:COG1196 511 KAALLLAGlrglagavaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAA 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1374 KYLNNIISEYEHTINSLEEEivqqskfHEERQMAWDQREVELERQLDIFDHQQNEILSAAQKFEDSTGSMPDpSLPLPNQ 1453
Cdd:COG1196 591 ALARGAIGAAVDLVASDLRE-------ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG-GSAGGSL 662
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 163965444 1454 LEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELE 1529
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1757-1958 |
3.46e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.67 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1757 TAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNK 1836
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1837 ILRE--KDGIDQ-------ENDELRRQIKRLSSglqSKTLIDNKQSLIDELQKKVKKLE---SQLERKVDDVDIKPVKEK 1904
Cdd:COG3883 91 RARAlyRSGGSVsyldvllGSESFSDFLDRLSA---LSKIADADADLLEELKADKAELEakkAELEAKLAELEALKAELE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 163965444 1905 SSKEELIRWEEGKkwQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEK 1958
Cdd:COG3883 168 AAKAELEAQQAEQ--EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAA 219
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1549-2397 |
3.56e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 3.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1549 RLNHKEEVLKKYQHLLEKARE-EQREIVKKHEEdlhvlHHKLEQQADNSLNKFRQTAQDLLKQSPApvpTNKHFIRLAEM 1627
Cdd:TIGR02169 202 RLRREREKAERYQALLKEKREyEGYELLKEKEA-----LERQKEAIERQLASLEEELEKLTEEISE---LEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1628 EQTVAEQDDSLSS-----LLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHaSEVKKVKAEVEDLRHALAQAHKDS 1702
Cdd:TIGR02169 274 LEELNKKIKDLGEeeqlrVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE-AEIDKLLAEIEELEREIEEERKRR 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1703 QSLKSELQAQKEAnsraptttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERiiavtsqkeanlnvqqvve 1782
Cdd:TIGR02169 353 DKLTEEYAELKEE------------LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI------------------- 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1783 rhtRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLssgl 1862
Cdd:TIGR02169 402 ---NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL---- 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1863 qsktlidnkQSLIDELQKKVKKLESQLERKvddvdikpvkeKSSKEELIRWEEGKKWQTKVeglrnrLKEKEGEAHGLAK 1942
Cdd:TIGR02169 475 ---------KEEYDRVEKELSKLQRELAEA-----------EAQARASEERVRGGRAVEEV------LKASIQGVHGTVA 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1943 QLNTLKELFAKA-------------------DKEKLTLQKKLKTTGMTVDQVLGVRALESEKELEELKKKNLDLENDILY 2003
Cdd:TIGR02169 529 QLGSVGERYATAievaagnrlnnvvveddavAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEF 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2004 MRT-----QQALPRDSVVEDLHLQNKYL-QEKLHTLEKKLSKEkySQSLTSEIESDDHCQKEQELQKENLKLSSENIE-L 2076
Cdd:TIGR02169 609 DPKyepafKYVFGDTLVVEDIEAARRLMgKYRMVTLEGELFEK--SGAMTGGSRAPRGGILFSRSEPAELQRLRERLEgL 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2077 KFQLEQANKDLPRLKNQVKDLKEMCEflkkgklELERKLGqvrgagrsgktipELEKTIGLMKKVVEKVQRENEQLKkas 2156
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELS-------DASRKIG-------------EIEKEIEQLEQEEEKLKERLEELE--- 743
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2157 giltsEKMATIEEENRNLKAELEKLKAhfgrQLSMQFESKNKGTEKIVAENERLRKELKKEIEAS-EKLRIAKNNLELVN 2235
Cdd:TIGR02169 744 -----EDLSSLEQEIENVKSELKELEA----RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElSKLEEEVSRIEARL 814
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2236 DKMAAQLEETGKRLQFAESRAPQLEgADSKSWKSIVVSRvyETKMKELESDIAKKNQSITDLKQLVREATEREQKAKKYT 2315
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQ-EQRIDLKEQIKSI--EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2316 EDLEQQIEILKNVPEGAETEQELIRELQLLRLANNQMDKERaelIHQIEINKDQTRADSS-IPDSDQLKEKINDLETQLR 2394
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE---LSEIEDPKGEDEEIPEeELSLEDVQAELQRVEEEIR 968
|
...
gi 163965444 2395 KLE 2397
Cdd:TIGR02169 969 ALE 971
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1066-1891 |
3.75e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 3.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1066 KELNERQRAEHCQKMYehLRTSLkqmeernFELETKFTELtkinldaqkveQMLRDELADsVTKAVSDADRQRILELEKS 1145
Cdd:pfam15921 92 RRLNESNELHEKQKFY--LRQSV-------IDLQTKLQEM-----------QMERDAMAD-IRRRESQSQEDLRNQLQNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1146 EVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKaliakLHQHVvSLQISEATALGKleSV 1225
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK-----IYEHD-SMSTMHFRSLGS--AI 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1226 TSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRQF--------SGALPLAQQEKFSKTMIQLQnd 1297
Cdd:pfam15921 223 SKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLiseheveiTGLTEKASSARSQANSIQSQ-- 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1298 kLKIMQEmknsqqehrNMENKTLELELKLKGLEELISTLK-DARGAQKVinWHVKIEELRLQELKLNRELVKGKEEIKYL 1376
Cdd:pfam15921 301 -LEIIQE---------QARNQNSMYMRQLSDLESTVSQLRsELREAKRM--YEDKIEELEKQLVLANSELTEARTERDQF 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1377 N----NIISEYEHTINSLEEEIVQQSKFHEERQMAWDqREVELERQLDIFDHQQNEILSAAQKFEDSTGSMPDPSLPLPN 1452
Cdd:pfam15921 369 SqesgNLDDQLQKLLADLHKREKELSLEKEQNKRLWD-RDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1453 QLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELrlrlpatadreklIAELERKElepks 1532
Cdd:pfam15921 448 RQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDL-------------TASLQEKE----- 509
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1533 hHTMKIAHQTIANMQARLNHKeevLKKYQHLlekareeqreivkKHEEDlHVLHHKLEQQADNSLNKFRQTAQDLLKQsp 1612
Cdd:pfam15921 510 -RAIEATNAEITKLRSRVDLK---LQELQHL-------------KNEGD-HLRNVQTECEALKLQMAEKDKVIEILRQ-- 569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1613 apvptnkhfiRLAEMEQTVAEQDDSLSSLLTKLKKVSKDL-EKQKEITELKV-REFENTKLRLQETHASE---------- 1680
Cdd:pfam15921 570 ----------QIENMTQLVGQHGRTAGAMQVEKAQLEKEInDRRLELQEFKIlKDKKDAKIRELEARVSDlelekvklvn 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1681 --------VKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEaNSRAPTTTMRNLVDRLKSQLalkEKQQKALSRALLEL 1752
Cdd:pfam15921 640 agserlraVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKR-NFRNKSEEMETTTNKLKMQL---KSAQSELEQTRNTL 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1753 RSEMTAAAEERIIAVTSQKEANLNvqqvverhtrelKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELqkkqk 1832
Cdd:pfam15921 716 KSMEGSDGHAMKVAMGMQKQITAK------------RGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQEL----- 778
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1833 ayNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSL-IDELQKKVKKLESQLER 1891
Cdd:pfam15921 779 --STVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLqFAECQDIIQRQEQESVR 836
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
964-1273 |
3.85e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 964 ELANKQYNELTTKYRDILQKdnmLVQRTSNLEHLECENASLKEQMEAISKELEITKEKLHTIEQAWEQEtklgndsnmdK 1043
Cdd:COG1196 221 ELKELEAELLLLKLRELEAE---LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----------Q 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1044 AKKSMTNSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFTELTKINLDAQKVEQMLRDEL 1123
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1124 ADSVTKAVS-----DADRQRILELEKSEVELKVEVSKL-REISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDE 1197
Cdd:COG1196 368 LEAEAELAEaeeelEELAEELLEALRAAAELAAQLEELeEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 163965444 1198 KALIAKLHQHVVSLQISEATALGKLESVTSKLQKMEAYNLRLEQKLDEKEQALyyARLEGRNRAKHLRQTIQSLRR 1273
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGVKAALLLAGLRG 521
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1636-2112 |
4.84e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 4.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1636 DSLSSLLTKLKKVSKDLEKQKEITELKVREFENtKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEA 1715
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEE-RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1716 NSRAPT-TTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMtAAAEERIIAVTSQKEANLNVQQVVERHTRElksQIED 1794
Cdd:PRK03918 313 EKRLSRlEEEINGIEERIKELEEKEERLEELKKKLKELEKRL-EELEERHELYEEAKAKKEELERLKKRLTGL---TPEK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1795 LNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKIL----------REKDGIDQEN--DELRRQIKRLSSGL 1862
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgRELTEEHRKEllEEYTAELKRIEKEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1863 qsKTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEGEAHGLAK 1942
Cdd:PRK03918 469 --KEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1943 QLNTLKELfakaDKEKLTLQKKLKTTGMTVDQVLGVRALESEKELEELKKKNLDLENdiLYMRTQQALPRDSVVEDLHLQ 2022
Cdd:PRK03918 547 ELEKLEEL----KKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEP--FYNEYLELKDAEKELEREEKE 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2023 NKYLQEKLHTLEKKLSK-EKYSQSLTSEIESDDHCQKEQE---LQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLK 2098
Cdd:PRK03918 621 LKKLEEELDKAFEELAEtEKRLEELRKELEELEKKYSEEEyeeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
490
....*....|....
gi 163965444 2099 EMCEFLKKGKLELE 2112
Cdd:PRK03918 701 EELEEREKAKKELE 714
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1585-1857 |
8.92e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 8.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1585 LHHKLEQQADNSLNKFRQTaqdllkQSPAPVPTNKHFIRlAEM--EQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELk 1662
Cdd:COG4913 182 LRRRLGIGSEKALRLLHKT------QSFKPIGDLDDFVR-EYMleEPDTFEAADALVEHFDDLERAHEALEDAREQIEL- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1663 vrefentkLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANSRAptttmrnLVDRLKSQLALKEKQQ 1742
Cdd:COG4913 254 --------LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRA-------ELARLEAELERLEARL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1743 KALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQI-----------EDLNENLLKLKEALKTSKN 1811
Cdd:COG4913 319 DALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLaalglplpasaEEFAALRAEAAALLEALEE 398
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 163965444 1812 KENSLADDLNELNNELQKKQKAYNKILREKDG-------IDQENDELRRQIKR 1857
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASlerrksnIPARLLALRDALAE 451
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-383 |
9.18e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 9.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 149 ALRNEEAENENSKLRRENKRLKKKNEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNyelvqylDEIQTLTEA 228
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE-------AELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 229 NEKIEVQNQEMRKNLEESVQEMEKMtDEYNRMKALVHQSD------------AVMDQIKKENEHYRLQVRELTDLLKAKD 296
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRL-GRQPPLALLLSPEDfldavrrlqylkYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 297 EEDDPVMMAVNAKVEEWKLILSSKDdeiiEYQQMLQSLrgklkNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTK 376
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKA----ERQKLLARL-----EKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
....*..
gi 163965444 377 EMEKNTF 383
Cdd:COG4942 242 RTPAAGF 248
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1143-1968 |
1.23e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1143 EKSEVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKALIAKLHQHVVSL-QISEATALGK 1221
Cdd:PTZ00121 1031 ELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKaEEAKKTETGK 1110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1222 LESVTSKLQKM----EAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRQFSGALPLAQQEKFSKTMIQLQND 1297
Cdd:PTZ00121 1111 AEEARKAEEAKkkaeDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKA 1190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1298 KLKIMQEMKNSQQEHRNMENKTLELELKLKGLEELISTLKDARGAQKvinwhvKIEELRLQELKLNRELVKGKEEIKYLN 1377
Cdd:PTZ00121 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK------DAEEAKKAEEERNNEEIRKFEEARMAH 1264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1378 niISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELERQLDifdhqqneilSAAQKFEDStgsmpdpslplpNQLEIA 1457
Cdd:PTZ00121 1265 --FARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD----------EAKKKAEEA------------KKADEA 1320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1458 LRKIKENIQvilKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELEPKSHHTMK 1537
Cdd:PTZ00121 1321 KKKAEEAKK---KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1538 IAHQTIANMQARLNHKEEVLKKYQHLLEKAREEQR--EIVKKHEEdlhvlhhkleqqadnslnkfRQTAQDLLKQSPAPv 1615
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadEAKKKAEE--------------------AKKADEAKKKAEEA- 1456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1616 ptnkhfiRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKV--KAEVEDLRH 1693
Cdd:PTZ00121 1457 -------KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAeeAKKADEAKK 1529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1694 AlAQAHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRAllelrSEMTAAAEERIIAVTSQKEA 1773
Cdd:PTZ00121 1530 A-EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA-----EEAKKAEEARIEEVMKLYEE 1603
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1774 NLNVQQVVERHTRELKSQIEDLNE--------NLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKilREKDGID 1845
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKaeeekkkvEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK--KKAEEAK 1681
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1846 QENDELRRQIKRLSSGLQSKTLIDNKQSLIDELQKK---VKKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKwqtK 1922
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaeeLKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK---K 1758
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 163965444 1923 VEGLRnRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTT 1968
Cdd:PTZ00121 1759 IAHLK-KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1453-1949 |
1.45e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1453 QLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELE--- 1529
Cdd:PRK03918 218 ELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyik 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1530 -PKSHHTMKIAHQTIANMQARLNHKEEVLKKYQHLLEKAREEQREIVKKHEEDLHVL-----HHKLEQQADNSLNKFRQT 1603
Cdd:PRK03918 298 lSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLeeleeRHELYEEAKAKKEELERL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1604 AQDLLKQSPAPVPTNKHFIRLAEME-----QTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREF-ENTKLRLQETH 1677
Cdd:PRK03918 378 KKRLTGLTPEKLEKELEELEKAKEEieeeiSKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELtEEHRKELLEEY 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1678 ASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEansrapTTTMRNLVDRLKSQlalkEKQQKALSRALLELRSEMT 1757
Cdd:PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE------LIKLKELAEQLKEL----EEKLKKYNLEELEKKAEEY 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1758 AAAEERIIAVTSQKEanlNVQQVVERhTRELKSQIEDLNENLLKLKEALKTSKNKENSLA-DDLNELNNELQKKQKAYNK 1836
Cdd:PRK03918 528 EKLKEKLIKLKGEIK---SLKKELEK-LEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNE 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1837 ILREKDGidqeNDELRRQIKRLSSglqSKTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRwEEG 1916
Cdd:PRK03918 604 YLELKDA----EKELEREEKELKK---LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELS-REL 675
|
490 500 510
....*....|....*....|....*....|...
gi 163965444 1917 KKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKE 1949
Cdd:PRK03918 676 AGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1351-1890 |
1.46e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1351 KIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERqmawdQREVELERQLDIFDHQQNEIL 1430
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA-----EEYIKLSEFYEEYLDELREIE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1431 SAAQKFEDstgsmpdpslpLPNQLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQnILSRDKVINELRLRL 1510
Cdd:PRK03918 314 KRLSRLEE-----------EINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE-AKAKKEELERLKKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1511 pATADREKLIAELERKElepKSHHTMKIAHQTIANMQARLNHKEEVLKKYQHLLEKAREE----QREIVKKHEEDLhvlh 1586
Cdd:PRK03918 382 -TGLTPEKLEKELEELE---KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcGRELTEEHRKEL---- 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1587 hkleqqadnslnkfrqtaqdllkqspapvpTNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELK--VR 1664
Cdd:PRK03918 454 ------------------------------LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKelAE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1665 EFENTKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANSRAPTttmrnlvdrLKSQLALKEKQQKA 1744
Cdd:PRK03918 504 QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE---------LEKKLDELEEELAE 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1745 LSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVverhtrelKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELN 1824
Cdd:PRK03918 575 LLKELEELGFESVEELEERLKELEPFYNEYLELKDA--------EKELEREEKELKKLEEELDKAFEELAETEKRLEELR 646
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 163965444 1825 NELQKKQKAYNKilREKDGIDQENDELRRQIKRLSSGLQSktlidnKQSLIDELQKKVKKLESQLE 1890
Cdd:PRK03918 647 KELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEE------LEKRREEIKKTLEKLKEELE 704
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
79-649 |
1.69e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 79 EQAKFENQLKTKVMKLENELEMAQQSAGGrdtrfLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENE 158
Cdd:PTZ00121 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADA-----AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 159 NSKLRRENKRLKKKNEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEvqnqE 238
Cdd:PTZ00121 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE----E 1455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 239 MRKNLEESVQEMEKMTDEYNRMKAlvhQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLILS 318
Cdd:PTZ00121 1456 AKKAEEAKKKAEEAKKADEAKKKA---EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE 1532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 319 SKDDEiieyqqmlqslrgKLKNAQldaDKSNIMALKQGIQERDSQIKmltEQVEQYTKEMEKNTFIIEdlKNELQKDKGT 398
Cdd:PTZ00121 1533 AKKAD-------------EAKKAE---EKKKADELKKAEELKKAEEK---KKAEEAKKAEEDKNMALR--KAEEAKKAEE 1591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 399 SNFYQQTHYMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDG 478
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 479 EMEVLTKEINKLEmkiNDILDENEALRERAGlEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIR 558
Cdd:PTZ00121 1672 EDKKKAEEAKKAE---EDEKKAAEALKKEAE-EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 559 QMAQERGKRNAASGLTIDDLNLSETFSHENKIEGRKlnfmslnnmnETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKL 638
Cdd:PTZ00121 1748 EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE----------ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEG 1817
|
570
....*....|.
gi 163965444 639 KELVEENKQLE 649
Cdd:PTZ00121 1818 NLVINDSKEME 1828
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
38-288 |
2.08e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 38 NELKNEDQENMIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMAQQsaggrDTRFLRDEI 117
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE-----RIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 118 RQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLRQD------------------ 179
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEaanlrerleslerriaat 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 180 ---IIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDE 256
Cdd:TIGR02168 837 errLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
|
250 260 270
....*....|....*....|....*....|..
gi 163965444 257 YNRMKALVHQSDAVMDQIKKENEHYRLQVREL 288
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2035-2457 |
2.16e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2035 KKLSKEKYSQSLTSEIESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKlELERK 2114
Cdd:PTZ00121 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD-EAKKK 1426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2115 LGQVRGAGRSGKTIPELEKTIGLMKKVVEKVQRENEQlKKASGILTSEKMATIEEENRNL-----KAELEKLKAHFGRQL 2189
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK-KKAEEAKKADEAKKKAEEAKKAdeakkKAEEAKKKADEAKKA 1505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2190 S---------MQFESKNKGTEKIVAENERLRKELKK--EIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQ 2258
Cdd:PTZ00121 1506 AeakkkadeaKKAEEAKKADEAKKAEEAKKADEAKKaeEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2259 LEGADSKSWKSIVVSRVYETKMK-------ELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILK-NVPE 2330
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKaeeakkaEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKiKAAE 1665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2331 GAETEQELIRELQLLRLANNQMDKERAELIHQIEINKD----QTRADSSIPDSDQLK--EKINDLETQLRKLELEKQHSK 2404
Cdd:PTZ00121 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaeelKKKEAEEKKKAEELKkaEEENKIKAEEAKKEAEEDKKK 1745
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 163965444 2405 EEVKKLKKELENFDPSFFEEIEDLKYNYKEEvkKNILLEEKLKKLSEQFGFEL 2457
Cdd:PTZ00121 1746 AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE--KEAVIEEELDEEDEKRRMEV 1796
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
26-298 |
3.21e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 26 DKLLISLSKVEVNELKNEDQENMIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFE--NQLKTKVMKLENELEMAQQ 103
Cdd:TIGR02169 214 QALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQllEELNKKIKDLGEEEQLRVK 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 104 saggRDTRFLRDEIRQLEKQLEQKDRELEDMEK-------ELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQL 176
Cdd:TIGR02169 294 ----EKIGELEAEIASLERSIAEKERELEDAEErlakleaEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 177 RQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDE 256
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE 449
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 163965444 257 YNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEE 298
Cdd:TIGR02169 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1822-2410 |
3.83e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 3.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1822 ELNNELQKKQKAYnkILREKDGIDQENDELRRQIKRLssglqsKTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKPV 1901
Cdd:COG1196 217 ELKEELKELEAEL--LLLKLRELEAELEELEAELEEL------EAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1902 KEKSSKEELIRWEEGKK-WQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTTGMTVDQVLGVRA 1980
Cdd:COG1196 289 EEYELLAELARLEQDIArLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1981 LESEKELEELKKKNLDLENDILYMRTQQALpRDSVVEDLHLQNKYLQEKLHTLEKKLSKEKysQSLTSEIESDDHCQKEQ 2060
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEE--ALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2061 ELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRGAGRSGKTIPELEKTIGLMKK 2140
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2141 VVEKVQRENEQLKKASGILTSEKMATIEEENRNLKAELEKLKAhfgrqlsmqfesKNKGTEKIVAENERLRKELKKEIEA 2220
Cdd:COG1196 526 VAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA------------AKAGRATFLPLDKIRARAALAAALA 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2221 SEKLRIAKNNLELvndkmAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYETKMKELESDIAKKNQSITDLKQL 2300
Cdd:COG1196 594 RGAIGAAVDLVAS-----DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2301 VREATEREQKAKKytEDLEQQIEilknvpEGAETEQELIRELQLLRLANNQMDKERAELIHQIEINKDQTRADSSIPDSD 2380
Cdd:COG1196 669 ELLAALLEAEAEL--EELAERLA------EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
570 580 590
....*....|....*....|....*....|
gi 163965444 2381 QLKEKINDLETQLRKLELEKqhSKEEVKKL 2410
Cdd:COG1196 741 LLEEEELLEEEALEELPEPP--DLEELERE 768
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1471-2284 |
5.26e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 5.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1471 TQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELEPkSHHTMKIAHQTIANMQARL 1550
Cdd:TIGR00606 236 SREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKV-FQGTDEQLNDLYHNHQRTV 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1551 NHKEEVLKKYQHLLEKAREEQREIVKKHEEdLHVLHHKLEQQADNSLNKFRqtAQDLLKQSPAPVP-------------- 1616
Cdd:TIGR00606 315 REKERELVDCQRELEKLNKERRLLNQEKTE-LLVEQGRLQLQADRHQEHIR--ARDSLIQSLATRLeldgfergpfserq 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1617 -TNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLqETHASEVKKVKAEVEDLRHAL 1695
Cdd:TIGR00606 392 iKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEIL-EKKQEELKFVIKELQQLEGSS 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1696 AQAHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAvTSQKEANL 1775
Cdd:TIGR00606 471 DRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT-KDKMDKDE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1776 NVQQVVERHTRELKSQIEDLnENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKD------------- 1842
Cdd:TIGR00606 550 QIRKIKSRHSDELTSLLGYF-PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELEskeeqlssyedkl 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1843 ----GIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDE--------------LQKKVKKLESQLERKVDDVDIK----P 1900
Cdd:TIGR00606 629 fdvcGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQfitqltdenqsccpVCQRVFQTEAELQEFISDLQSKlrlaP 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1901 VKEKSSKEELIRWE-EGKKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKaDKEKLTLQKKLKTTGMTVDQVLGVr 1979
Cdd:TIGR00606 709 DKLKSTESELKKKEkRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR-LKNDIEEQETLLGTIMPEEESAKV- 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1980 ALESEKELEELKKKNLDLENDIlymrTQQALPRDSVVEDLHLQ--NKYLQEKLHTLEKKLSKEKYSQSLtseieSDDHCQ 2057
Cdd:TIGR00606 787 CLTDVTIMERFQMELKDVERKI----AQQAAKLQGSDLDRTVQqvNQEKQEKQHELDTVVSKIELNRKL-----IQDQQE 857
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2058 KEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLE-----------LERKLGQVRGAGRSGK 2126
Cdd:TIGR00606 858 QIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQdspletflekdQQEKEELISSKETSNK 937
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2127 TI--------PELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEE-------NRNLKAELEKLKAHFGRQLSM 2191
Cdd:TIGR00606 938 KAqdkvndikEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECekhqekiNEDMRLMRQDIDTQKIQERWL 1017
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2192 QFESKNKGTEKIVAENERLRKELKKEI-------------EASEKLRIAKNNLELVNDKMAAQLEEtgKRLQFAESRAPQ 2258
Cdd:TIGR00606 1018 QDNLTLRKRENELKEVEEELKQHLKEMgqmqvlqmkqehqKLEENIDLIKRNHVLALGRQKGYEKE--IKHFKKELREPQ 1095
|
890 900
....*....|....*....|....*.
gi 163965444 2259 LEGADSKSWKSIVVSRVYETKMKELE 2284
Cdd:TIGR00606 1096 FRDAEEKYREMMIVMRTTELVNKDLD 1121
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2209-2454 |
6.48e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2209 RLRKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYETKMKELESDIA 2288
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2289 KKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKNVPEGAETEQELIRELQLLRLANNQMDKERAELIHQI----- 2363
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIngiee 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2364 ---EINKDQTRADSSIPDSDQLKEKINDLETQLRKLELEKQHSKEEVKKLKKELEnfdpsffEEIEDLKYNYKEEVKKNI 2440
Cdd:PRK03918 329 rikELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG-------LTPEKLEKELEELEKAKE 401
|
250
....*....|....
gi 163965444 2441 LLEEKLKKLSEQFG 2454
Cdd:PRK03918 402 EIEEEISKITARIG 415
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
119-350 |
7.83e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 7.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 119 QLEKQLEQKDRELEDMEKELDKEKK-VNEQLALRNEEAENENSKLRRENKRLKKKNEQLRQDIIDYQKQIDSQKESLLSR 197
Cdd:PHA02562 167 EMDKLNKDKIRELNQQIQTLDMKIDhIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 198 RGEDSDYRSQLSKKNYELVQYLDEIQTLTEAnEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKE 277
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEQFQKV-IKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDEL 325
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 163965444 278 NE---HYRLQVRELTDlLKAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLKnaQLDADKSNI 350
Cdd:PHA02562 326 EEimdEFNEQSKKLLE-LKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD--KIVKTKSEL 398
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1827-2398 |
8.72e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 8.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1827 LQKKQKAYNKILREKDGIDQENDELRRQIKRLSsglQSKTLIDNKQSLIDELQKKVKKLESQLERKVDDVD--------- 1897
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTE---NIEELIKEKEKELEEVLREINEISSELPELREELEklekevkel 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1898 --IKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELfaKADKEKLTLQKKLKTTGMTVDQV 1975
Cdd:PRK03918 234 eeLKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL--KEKAEEYIKLSEFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1976 LGVRALESEKELEELKKKNLDLENDilymrtqqalprDSVVEDLHLQNKYLQEKLHTLEKKLSKEKYSQSLTSEIE---S 2052
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERIKELEEK------------EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELErlkK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2053 DDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELE---RKLGQVRGAGRSGKTIP 2129
Cdd:PRK03918 380 RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgRELTEEHRKELLEEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2130 ELEKTIGLMKKVVEKVQRENEQLKKASGILTSE----KMATIEEENRNLKAELEKLKAHFGRQLSMQFESKNKGTEKIVA 2205
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKEseliKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2206 ENERLRKELKKEIEASEKLRIAKNNLELVNDKMAA---QLEETG-KRLQFAESRAPQLEGADSKSwksivvsrvyeTKMK 2281
Cdd:PRK03918 540 EIKSLKKELEKLEELKKKLAELEKKLDELEEELAEllkELEELGfESVEELEERLKELEPFYNEY-----------LELK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2282 ELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKNvpEGAETEQELIRELQLlrlannQMDKERAELIH 2361
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEYEELREEYL------ELSRELAGLRA 680
|
570 580 590
....*....|....*....|....*....|....*..
gi 163965444 2362 QIEINKDqtRADSSIPDSDQLKEKINDLETQLRKLEL 2398
Cdd:PRK03918 681 ELEELEK--RREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
230-507 |
8.83e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 8.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 230 EKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDdpvMMAVNAK 309
Cdd:TIGR02169 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE---QLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 310 VEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDADKSnimalkqgiqerDSQIKMLTEQVEQYTKEMEKNTFIIEDLK 389
Cdd:TIGR02169 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL------------LAEIEELEREIEEERKRRDKLTEEYAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 390 NElqkdkgtsnfyqqthYMKIHSKVQILEEKTKEA-ERIAELAEA--DAREKDKELVEALKRLKDYESGVYG-LEDAVIE 465
Cdd:TIGR02169 364 EE---------------LEDLRAELEEVDKEFAETrDELKDYREKleKLKREINELKRELDRLQEELQRLSEeLADLNAA 428
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 163965444 466 IKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRER 507
Cdd:TIGR02169 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
94-291 |
1.50e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 94 LENELEMAQQSAGGRdTRFLRDEIRQLEKQLEQKDRELEDMEKE-----LDKEKKVNEQlalRNEEAENENSKLRRENKR 168
Cdd:COG3206 162 LEQNLELRREEARKA-LEFLEEQLPELRKELEEAEAALEEFRQKnglvdLSEEAKLLLQ---QLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 169 LKKKNEQLRQDIIDYQKQIDSQKES--LLSRRGEDSDYRSQLSKknyELVQYLDEIQTLTEANEKIEVQNQEMRKNLEES 246
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAE---LSARYTPNHPDVIALRAQIAALRAQLQQEAQRI 314
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 163965444 247 VQEMEKmtdEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDL 291
Cdd:COG3206 315 LASLEA---ELEALQAREASLQAQLAQLEARLAELPELEAELRRL 356
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
111-258 |
1.56e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.54 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 111 RFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLRQDIIDyqkqIDSQ 190
Cdd:PRK12705 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEK----LDNL 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 163965444 191 KESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYN 258
Cdd:PRK12705 104 ENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEAD 171
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
790-1374 |
1.62e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 790 QELDNKEKKLKHLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKDIWKTDSEMIREEKRKLED--QAEQDAVKVKEYNNLLS 867
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEakKKAEEAKKADEAKKKAE 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 868 ALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEMER--HLRKENGKHRNDVIAMEAEVTEKLGSLQRFKEMAIF 945
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 946 KIAALQKVidnsvslselELANKQYNELTTKYRDILQKDnmlvqrtsnlehlecenaSLKEQMEAISKELEItKEKLHTI 1025
Cdd:PTZ00121 1406 KADELKKA----------AAAKKKADEAKKKAEEKKKAD------------------EAKKKAEEAKKADEA-KKKAEEA 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1026 EQAWEQETKLGNDSNMDKAKKSMTNSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSlkqmEERNFELETKFTEL 1105
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA----EEAKKADEAKKAEE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1106 TKINLDAQKVEQMLRdelADSVTKAVsdadrqrilELEKSEVELKVE-VSKLREISDIAKRQVDFLNSQQQSREKEVESL 1184
Cdd:PTZ00121 1533 AKKADEAKKAEEKKK---ADELKKAE---------ELKKAEEKKKAEeAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1185 RTQLLDFQAQSDEKALIAKLHQHVVSLQISEATALGKLESVTSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHL 1264
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1265 RQTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRnmeNKTLELELKLKGLEELISTLKDARGAQK 1344
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK---IKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
|
570 580 590
....*....|....*....|....*....|
gi 163965444 1345 VINWHVKIEELRLQELKLNRELVKgKEEIK 1374
Cdd:PTZ00121 1758 KIAHLKKEEEKKAEEIRKEKEAVI-EEELD 1786
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1732-1895 |
1.75e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1732 KSQLALKEKQQKALSRALLELRSEMTAAAEERIiAVTSQKEANLNVQQV---------VERHTRELKSQIEDLNENLLKL 1802
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD-ALQERREALQRLAEYswdeidvasAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1803 KEalktsknkensLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQS------------------ 1864
Cdd:COG4913 688 AA-----------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaedlarlelralleerfa 756
|
170 180 190
....*....|....*....|....*....|....*....
gi 163965444 1865 --------KTLIDNKQSLIDELQKKVKKLESQLERKVDD 1895
Cdd:COG4913 757 aalgdaveRELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1724-2388 |
1.76e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1724 MRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEEriIAVTSQKEANLNVQQVVErhtrelKSQIEDLNENLLKLK 1803
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNK--IKILEQQIKDLNDKLKKN------KDKINKLNSDLSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1804 EALKTSKNKENSLADDLNELNNELQKKQKAYNKIL----REKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDELQ 1879
Cdd:TIGR04523 110 SEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLteikKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1880 KKVKKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTK-VEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEK 1958
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDnIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1959 LTLQKKLKTTGMTVDQvlgvralesekeleeLKKKNLDLENDILYMRTQQAlprDSVVEDLHLQNKYLQEKLHTLEKKLS 2038
Cdd:TIGR04523 270 SEKQKELEQNNKKIKE---------------LEKQLNQLKSEISDLNNQKE---QDWNKELKSELKNQEKKLEEIQNQIS 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2039 K-EKYSQSLTSEIESddhcqkeqeLQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQ 2117
Cdd:TIGR04523 332 QnNKIISQLNEQISQ---------LKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2118 VRgagrsgKTIPELEKTIGLMKKVVEKVQRENEQLkKASGILTSEKMATIEEENRNLKAELEKLKAhFGRQLSMQFESKN 2197
Cdd:TIGR04523 403 QE------KLNQQKDEQIKKLQQEKELLEKEIERL-KETIIKNNSEIKDLTNQDSVKELIIKNLDN-TRESLETQLKVLS 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2198 KGTEKIVAENERLRKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEgADSKSWKSIVVSRVYE 2277
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKE-SKISDLEDELNKDDFE 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2278 TKMKELESDIAKKNQSITDLKQ----LVREATEREQKAKKYTED-------LEQQIEILKNVPEGAETEQELIRELQLLR 2346
Cdd:TIGR04523 554 LKKENLEKEIDEKNKEIEELKQtqksLKKKQEEKQELIDQKEKEkkdlikeIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 163965444 2347 LANNQMDKERAELIHQIEINKDQTRADSSIPDSD--QLKEKIND 2388
Cdd:TIGR04523 634 KNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKikESKTKIDD 677
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1458-2224 |
1.91e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1458 LRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELEPKSHHTMK 1537
Cdd:pfam02463 271 LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1538 IAHQTIANMQARLNHKEEVLKKYQHLLEKAREEQREIVKKHEEDLHVLHHKLEQQADNSLNKFRQTAQDLLKqspapvpt 1617
Cdd:pfam02463 351 REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLK-------- 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1618 nkhfIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKVKAEvEDLRHALAQ 1697
Cdd:pfam02463 423 ----EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLEL-LLSRQKLEE 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1698 AHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNV 1777
Cdd:pfam02463 498 RSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1778 QQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKR 1857
Cdd:pfam02463 578 RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1858 LSSGLQSKTLIDNKQSLIDELQKKVKKLESQLERKVddvdIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEGEA 1937
Cdd:pfam02463 658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEE----ILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDK 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1938 HGLAKQLNTLKELFAKADKEKLTLQKKLKttgmtvdqvlgvRALESEKELEELKKKNLDLENDILYMRTQQALPRDSVVE 2017
Cdd:pfam02463 734 INEELKLLKQKIDEEEEEEEKSRLKKEEK------------EEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2018 DLHLQNKYLQEKLHTLEKKLSKEKYSQSLTSEIESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDL 2097
Cdd:pfam02463 802 ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEE 881
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 2098 KEMCEFLKKGKLELERKLGQVRGAGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKAS---GILTSEKMATIEEENRNL 2174
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELlleEADEKEKEENNKEEEEER 961
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 163965444 2175 KAELEKLKAHFGRQLSM---QFESKNKGTEKIVAENERLRKELKKEIEASEKL 2224
Cdd:pfam02463 962 NKRLLLAKEELGKVNLMaieEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1740-1969 |
2.00e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1740 KQQKALSRALLELRSEMtaAAEERIIAVTSQKEANLNVQqvverhTRELKSQIEDLNENLLKLKEALKTSKNKENSLADD 1819
Cdd:COG4942 20 DAAAEAEAELEQLQQEI--AELEKELAALKKEEKALLKQ------LAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1820 LNELNNELQKKQKAYNKILREKDGIDQEN--------DELRRQIKRLSSglqSKTLIDNKQSLIDELQKKVKKLESQLER 1891
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPplalllspEDFLDAVRRLQY---LKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 163965444 1892 KVDDVDIKPVKEKSSKEELIRWEEGKKWQTK-VEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTTG 1969
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKlLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
113-571 |
2.13e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 113 LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLRQDIIDYQKQID---- 188
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllpl 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 189 -SQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQ-NQEMRKNLEESVQEMEKMTDEYNRMKALVHQ 266
Cdd:COG4717 131 yQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAE 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 267 SDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLknAQLDAD 346
Cdd:COG4717 211 LEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLV--LGLLAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 347 KSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQTHYMKIHSKVQILEEKTK---- 422
Cdd:COG4717 289 LFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQleel 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 423 EAERIAELAEADArEKDKELVEALKRLKDYESGVYGLEDAVIEI--KNCKAQIKIRDGEMEVLTKEINKLEMKINDILDE 500
Cdd:COG4717 369 EQEIAALLAEAGV-EDEEELRAALEQAEEYQELKEELEELEEQLeeLLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 163965444 501 NEALRERAGlepktmidltefrnskRLKQQQYRAENQvllKEIESLEEERLDLKRKIRQMAQERGKRNAAS 571
Cdd:COG4717 448 LEELREELA----------------ELEAELEQLEED---GELAELLQELEELKAELRELAEEWAALKLAL 499
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
78-259 |
2.56e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 78 EEQAKFENQLKTKVMKLENELEMAQQSAggrDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLalrnEEAEN 157
Cdd:COG4913 627 AEAEERLEALEAELDALQERREALQRLA---EYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQL----EELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 158 ENSKLRRENKRLKKKNEQLRQDIIDYQKQIDsQKESLLSRRGEDSD--YRSQLSKKNYELVQYLDEIQTLTEANEKIEVQ 235
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLEAAEDLARleLRALLEERFAAALGDAVERELRENLEERIDAL 778
|
170 180
....*....|....*....|....
gi 163965444 236 NQEMRKnleeSVQEMEKMTDEYNR 259
Cdd:COG4913 779 RARLNR----AEEELERAMRAFNR 798
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
82-198 |
2.60e-03 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 42.41 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 82 KFENQLKTKV-----MKL--------------ENELEMAQQSAGGRDTRFLRdEIRQLEKQLEQKDRELEDMEKELDKEK 142
Cdd:COG4026 77 KFFEELKGMVghverMKLplghdveyvdvelvRKEIKNAIIRAGLKSLQNIP-EYNELREELLELKEKIDEIAKEKEKLT 155
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 163965444 143 KVNEQLALRNEEAENENSKLRRENKRLKKKNEQLRQDIIDyqkqIDSQKESLLSRR 198
Cdd:COG4026 156 KENEELESELEELREEYKKLREENSILEEEFDNIKSEYSD----LKSRFEELLKKR 207
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
78-181 |
2.90e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 78 EEQAKFENQLKTK---VMKLENELEMAQQSAggrdtrflRDEIRQlEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEE 154
Cdd:COG2433 427 AEVEELEAELEEKderIERLERELSEARSEE--------RREIRK-DREISRLDREIERLERELEEERERIEELKRKLER 497
|
90 100
....*....|....*....|....*..
gi 163965444 155 AENENSKLRRENKRLKKKNEQLRQDII 181
Cdd:COG2433 498 LKELWKLEHSGELVPVKVVEKFTKEAI 524
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1624-1873 |
3.55e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1624 LAEMEQTVAEQDDSLSSLLTKLKKVSKDLEK-QKEITELkvrefentklrlqethASEVKKVKAEVEDLRHALAQAHKDS 1702
Cdd:COG3883 4 LALAAPTPAFADPQIQAKQKELSELQAELEAaQAELDAL----------------QAELEELNEEYNELQAELEALQAEI 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1703 QSLKSELQAQKEAnsraptttMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVqqvve 1782
Cdd:COG3883 68 DKLQAEIAEAEAE--------IEERREELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADL----- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1783 rhTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGL 1862
Cdd:COG3883 135 --LEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAA 212
|
250
....*....|.
gi 163965444 1863 QSKTLIDNKQS 1873
Cdd:COG3883 213 AAAAAAAAAAA 223
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1653-1836 |
3.59e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1653 EKQKEITELKvrefenTKLRLQETHASEVKKVKAEVEDLRHAL-------------AQAHKDSQSLKSELQAQKEANSRa 1719
Cdd:COG4913 614 ALEAELAELE------EELAEAEERLEALEAELDALQERREALqrlaeyswdeidvASAEREIAELEAELERLDASSDD- 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1720 ptttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNENL 1799
Cdd:COG4913 687 --------LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 163965444 1800 LKLKEALKTSKNKENSLAD---DLNELNNELQKKQKAYNK 1836
Cdd:COG4913 759 LGDAVERELRENLEERIDAlraRLNRAEEELERAMRAFNR 798
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
78-755 |
4.01e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 78 EEQAKFENQLKTKVMKLENELEMAQQSAGGRDTRFLRDEIRQLEKQLEQKDRELEDmEKELDKEKKVNE----QLALRNE 153
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAED-AKRVEIARKAEDarkaEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 154 EAENENSKLRRENKRlkkKNEQLRQdiIDYQKQIDSQKESLLSRRGEDSdyRSQLSKKNYELVQYLDEIQTLTEANEKIE 233
Cdd:PTZ00121 1174 DAKKAEAARKAEEVR---KAEELRK--AEDARKAEAARKAEEERKAEEA--RKAEDAKKAEAVKKAEEAKKDAEEAKKAE 1246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 234 vqnqEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRL-------QVRELTDLLKAKDEEDDPVMMAV 306
Cdd:PTZ00121 1247 ----EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeakkaeEKKKADEAKKKAEEAKKADEAKK 1322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 307 NAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIE 386
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 387 DLKNELQKDKGTSNFYQQTHYMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDyesgvyglEDAVIEI 466
Cdd:PTZ00121 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE--------EAKKADE 1474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 467 KNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESL 546
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 547 EE-ERLDLKRKIRQMAQERGKRNAAsgltiddlnlSETFSHENKIEGRKLNFMSLNNMNETQSKNEFLSRELAEKEKDLE 625
Cdd:PTZ00121 1555 EElKKAEEKKKAEEAKKAEEDKNMA----------LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE 1624
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 626 rsrtviAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDSDVKGGEtsliipslERLVNAMESKNAEGIFDASLHLKAQ 705
Cdd:PTZ00121 1625 ------LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE--------EAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 163965444 706 VDQLTGRNEELR--QELRQSRKEAVNYSQQLVKA----NLKIDHLEKETDLLRQSA 755
Cdd:PTZ00121 1691 AEALKKEAEEAKkaEELKKKEAEEKKKAEELKKAeeenKIKAEEAKKEAEEDKKKA 1746
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1762-1973 |
5.10e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1762 ERIIAVTSQKEANLNVQqvvERHTRELKSQIEDLNENLLKLKEALKtsknkensladdlNELNNELQKKQKAYNKILRE- 1840
Cdd:PRK00409 519 NELIASLEELERELEQK---AEEAEALLKEAEKLKEELEEKKEKLQ-------------EEEDKLLEEAEKEAQQAIKEa 582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 1841 KDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDELQKKVKKL----ESQLERKV-DDVDIKPVKEKSskeELIRWEE 1915
Cdd:PRK00409 583 KKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKkkqkEKQEELKVgDEVKYLSLGQKG---EVLSIPD 659
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 163965444 1916 GKKWQTKVEGLRNRLKEKEGEAHGLAKqlntlKELFAKADKEKLtlqkKLKTTGMTVD 1973
Cdd:PRK00409 660 DKEAIVQAGIMKMKVPLSDLEKIQKPK-----KKKKKKPKTVKP----KPRTVSLELD 708
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
113-720 |
5.33e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 113 LRDEIRQLEKQLEQKDRELEDMEKELDK---------EKKVNEQLALRNEEAeNENSKLRRENKRLKKKNEQLRQDIIDY 183
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSsmnsiktfwSPELKKERALRKEEA-ARISVLKEQYRVTQEENQHLQLTIQAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 184 QKQIDSQKE---------SLLSRRGEDSDYRSQLSKKNYELVQYLDEIQ---------TLTEANEKIEVQNQEM------ 239
Cdd:pfam10174 80 QDELRAQRDlnqllqqdfTTSPVDGEDKFSTPELTEENFRRLQSEHERQakelfllrkTLEEMELRIETQKQTLgardes 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 240 -RKNLE---------ESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYR--LQVRELTDLLKAKDEEDDPVMMAVN 307
Cdd:pfam10174 160 iKKLLEmlqskglpkKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLReeLHRRNQLQPDPAKTKALQTVIEMKD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 308 AKVEEWKLILSSKDDEI--IEYQQMLQSLRGKLKNAQLDADKSN-------IMALKQGIQERDSQIKMLTEQVEQYTKEM 378
Cdd:pfam10174 240 TKISSLERNIRDLEDEVqmLKTNGLLHTEDREEEIKQMEVYKSHskfmknkIDQLKQELSKKESELLALQTKLETLTNQN 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 379 EKNTFIIEDLKNELQKDKGTSNFYQ---QTHYMKIHSKVQILEEKTKEAERIAELAEADAREkdkelVEALKRLKDY-ES 454
Cdd:pfam10174 320 SDCKQHIEVLKESLTAKEQRAAILQtevDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGE-----IRDLKDMLDVkER 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 455 GVYGLEDaviEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDIlDENEALRERAGLEPKTMIDltefrnskRLKQQQYRa 534
Cdd:pfam10174 395 KINVLQK---KIENLQEQLRDKDKQLAGLKERVKSLQTDSSNT-DTALTTLEEALSEKERIIE--------RLKEQRER- 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 535 ENQVLLKEIESLEEERLDLKRKIRQM-------------AQERGKRNAASGLTIDDLNLSETFSHENKIE---GRKLNFM 598
Cdd:pfam10174 462 EDRERLEELESLKKENKDLKEKVSALqpeltekesslidLKEHASSLASSGLKKDSKLKSLEIAVEQKKEecsKLENQLK 541
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 599 SLNNMNETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDSDVKGGETSLIIP 678
Cdd:pfam10174 542 KAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVA 621
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 163965444 679 SLERLVNAMESKNAEGIFDASL--------HLKAQVDQLTGRNEELRQEL 720
Cdd:pfam10174 622 NIKHGQQEMKKKGAQLLEEARRrednladnSQQLQLEELMGALEKTRQEL 671
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
86-178 |
7.19e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 86 QLKTKVMKLENELEMAQQSaggrDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRE 165
Cdd:COG0542 415 ELERRLEQLEIEKEALKKE----QDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPEL 490
|
90
....*....|...
gi 163965444 166 NKRLKKKNEQLRQ 178
Cdd:COG0542 491 EKELAELEEELAE 503
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
78-190 |
7.79e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.58 E-value: 7.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 78 EEQAKFEnQLKTKVMKLE---NELEMAQQSAGGRD--TRfLRDEIrqLEKQLEQKDRELEDMEKELDKEKKVNEQLALRN 152
Cdd:PRK10929 170 LAQAQLT-ALQAESAALKalvDELELAQLSANNRQelAR-LRSEL--AKKRSQQLDAYLQALRNQLNSQRQREAERALES 245
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 163965444 153 EE--AENEN------SKLRRENKRLKKK-NEQL-RQDIIDY-QKQIDSQ 190
Cdd:PRK10929 246 TEllAEQSGdlpksiVAQFKINRELSQAlNQQAqRMDLIASqQRQAASQ 294
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
20-507 |
8.55e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 8.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 20 RQEELADKLLISLSKVEVNELKNEDQENMIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELE 99
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 100 MAQQSAgGRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLRQD 179
Cdd:COG1196 386 EELLEA-LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 180 IIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLE---ESVQEMEKMTDE 256
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLigvEAAYEAALEAAL 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 257 YNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEYQQMLQSLRG 336
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 337 K-LKNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKgtsnfyQQTHYMKIHSKVQ 415
Cdd:COG1196 625 RtLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA------ERLAEEELELEEA 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 416 ILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNcKAQIKIRDGEMEVLTKEINKLEMKIN 495
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE-ALEELPEPPDLEELERELERLEREIE 777
|
490
....*....|....*....
gi 163965444 496 DI-------LDENEALRER 507
Cdd:COG1196 778 ALgpvnllaIEEYEELEER 796
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
87-279 |
8.64e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 8.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 87 LKTKVMKLENELEMAQQSAGGRDTRFLRDEIRQLEKQLEQKDRELEDMEKEL-DKEKKVNEqlaLRNEEAENENSKLR-- 163
Cdd:PRK05771 51 LLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIkELEEEISE---LENEIKELEQEIERle 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 164 ------------RENKRLKKKNEQLRQDIIDYQKQIDSQKESLLSRRGEDSDY------RSQLSKKNYELVQY------L 219
Cdd:PRK05771 128 pwgnfdldlsllLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYvvvvvlKELSDEVEEELKKLgferleL 207
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 220 DEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRmkaLVHQSDAVMDQIKKENE 279
Cdd:PRK05771 208 EEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE---ELLALYEYLEIELERAE 264
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
308-662 |
8.98e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 308 AKVEEWKLILSSKDDEIIEYQQMLQSLRGKL--KNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFII 385
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELeeLSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 386 EDLKNELQKDKGTSNfYQQTHYMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGvygLEDAVIE 465
Cdd:TIGR02168 771 EEAEEELAEAEAEIE-ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR---LEDLEEQ 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 466 IKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAglepktmidltefrnskrlkqQQYRAENQVLLKEIES 545
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL---------------------ALLRSELEELSEELRE 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 546 LEEERLDLKRKIRQMAQERGK-RNAASGLTIDDLNLSETFSHENKIEgrklnfmsLNNMNETQSKNEFLSRELAEKEKDL 624
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQlELRLEGLEVRIDNLQERLSEEYSLT--------LEEAEALENKIEDDEEEARRRLKRL 977
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 163965444 625 ERSR--------TVIAKFQSKLKELVEENKQ---LEEGMKEILQAIKDM 662
Cdd:TIGR02168 978 ENKIkelgpvnlAAIEEYEELKERYDFLTAQkedLTEAKETLEEAIEEI 1026
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
177-753 |
9.07e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 9.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 177 RQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNY---ELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKM 253
Cdd:PRK01156 151 RKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYleeKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNA 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 254 TDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDE-----------EDDPVMMAVNAKVEEWKLIlsskdD 322
Cdd:PRK01156 231 MDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYykeleerhmkiINDPVYKNRNYINDYFKYK-----N 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 323 EIIEYQQMLQSLrgklkNAQLDADKSNIMALKQGIQERDSQIKMlteqveqyTKEMEKNTFIIEDLKNELQKDKGTSNFY 402
Cdd:PRK01156 306 DIENKKQILSNI-----DAEINKYHAIIKKLSVLQKDYNDYIKK--------KSRYDDLNNQILELEGYEMDYNSYLKSI 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 403 QQTHyMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVieiknckaqIKIRDGEMEV 482
Cdd:PRK01156 373 ESLK-KKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRI---------RALRENLDEL 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 483 ltkeinklemkindilDENEALRERAGLEPKTMIDLTEfRNSKRLKqQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQ 562
Cdd:PRK01156 443 ----------------SRNMEMLNGQSVCPVCGTTLGE-EKSNHII-NHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKK 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 563 ERGKRNAAS-GLTIDDLNLSETFSHENKIEGRKLNFMSLNNMNETQSKNEFLSRELAEKEKDLE--------RSRTVIAK 633
Cdd:PRK01156 505 RKEYLESEEiNKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTswlnalavISLIDIET 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 634 FQSKLKELVEENKQLEEGMKEILQAIKDMPKDSDVKGGETSLIIPSLERLVNAMESKNA--EGIFDASLHLK---AQVDQ 708
Cdd:PRK01156 585 NRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKIliEKLRGKIDNYKkqiAEIDS 664
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 163965444 709 LTGRNEELRQELRQSRKEAVNYSQQLVKANLKIDHLEKETDLLRQ 753
Cdd:PRK01156 665 IIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRT 709
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
86-187 |
9.38e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 9.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163965444 86 QLKTKVMKLENELEmaqqsaggRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKekkvneqlalRNEEAENENSKLRRE 165
Cdd:PRK12704 61 EAKEEIHKLRNEFE--------KELRERRNELQKLEKRLLQKEENLDRKLELLEK----------REEELEKKEKELEQK 122
|
90 100
....*....|....*....|..
gi 163965444 166 NKRLKKKNEQLrQDIIDYQKQI 187
Cdd:PRK12704 123 QQELEKKEEEL-EELIEEQLQE 143
|
|
| |
