NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|194239699|ref|NP_689928|]
View 

tubulin-specific chaperone cofactor E-like protein [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ubl_TBCEL cd17045
ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) ...
 337-422 1.89e-44

ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) and similar proteins; TBCEL, also termed leucine-rich repeat-containing protein 35 (LRRC35), or E-like (EL), is a novel regulator of tubulin stability, suggesting a link between tubulin turnover and vesicle transport. TBCEL is abundantly expressed in testis, but is also present in several tissues at a much lower level. It is required for the synchronous movement of the investment cones and is important for normal male fertility. TBCEL shows high sequence similarity to tubulin-specific chaperone cofactor E (TBCE), a component of the multimolecular complex required for tubulin heterodimer formation in all eukaryotic cells. It contains a leucine-rich repeat protein-protein interaction domain and a C-terminal ubiquitin-like (Ubl) domain, but does not harbor the cytoskeleton-associated protein with glycine-rich segment (CAP-Gly) domain found in TBCE.


:

Pssm-ID: 340565  Cd Length: 87  Bit Score: 149.32  E-value: 1.89e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 337 DLRPQSSAKVEVHFNDQVEEMSIRLDQTVAELKKQLKTLVQLPTSNMLLYYFDHE-APFGPEEMKYSSRALHSFGIRDGD 415
Cdd:cd17045    1 DLTPPKSAKVTVHFEDQVESMDIDLDQTVAELKKQLKNLVGLPPSKMRLYYIDIEmSIFGPEELRFPSRALYSYNIRDGD 80


                 ....*..
gi 194239699 416 KIYVESK 422
Cdd:cd17045   81 EILVEPK 87
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
51-300 3.53e-12

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 67.65  E-value: 3.53e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699  51 SVLVLNSCGITCAGDEkeIAAFcAHVSELDLSDNKLEDwheVSKIVSNVPQLEFLNLSSNplNLSVLERTcAGSFSGVRK 130
Cdd:COG4886  116 ESLDLSGNQLTDLPEE--LANL-TNLKELDLSNNQLTD---LPEPLGNLTNLKSLDLSNN--QLTDLPEE-LGNLTNLKE 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 131 LVLNNSKasWETVHMILQELPDLEELFLCLNDYETVSCPSICCHSLKLLHITDNNLQDWTEIRKLgvmfPSLDTLVLANN 210
Cdd:COG4886  187 LDLSNNQ--ITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPELGNL----TNLEELDLSNN 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 211 HLNAIEEpddsLARLfPNLRSISLHKSGLQSWEdIDKLNSFPKLEEVRLLGIPLLQPYTTEERRKLVIARLPSVSKLNGS 290
Cdd:COG4886  261 QLTDLPP----LANL-TNLKTLDLSNNQLTDLK-LKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLL 334

                        250
                 ....*....|
gi 194239699 291 VVTDGEREDS 300
Cdd:COG4886  335 VTLTTLALSL 344
 
Name Accession Description Interval E-value
Ubl_TBCEL cd17045
ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) ...
 337-422 1.89e-44

ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) and similar proteins; TBCEL, also termed leucine-rich repeat-containing protein 35 (LRRC35), or E-like (EL), is a novel regulator of tubulin stability, suggesting a link between tubulin turnover and vesicle transport. TBCEL is abundantly expressed in testis, but is also present in several tissues at a much lower level. It is required for the synchronous movement of the investment cones and is important for normal male fertility. TBCEL shows high sequence similarity to tubulin-specific chaperone cofactor E (TBCE), a component of the multimolecular complex required for tubulin heterodimer formation in all eukaryotic cells. It contains a leucine-rich repeat protein-protein interaction domain and a C-terminal ubiquitin-like (Ubl) domain, but does not harbor the cytoskeleton-associated protein with glycine-rich segment (CAP-Gly) domain found in TBCE.


Pssm-ID: 340565  Cd Length: 87  Bit Score: 149.32  E-value: 1.89e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 337 DLRPQSSAKVEVHFNDQVEEMSIRLDQTVAELKKQLKTLVQLPTSNMLLYYFDHE-APFGPEEMKYSSRALHSFGIRDGD 415
Cdd:cd17045    1 DLTPPKSAKVTVHFEDQVESMDIDLDQTVAELKKQLKNLVGLPPSKMRLYYIDIEmSIFGPEELRFPSRALYSYNIRDGD 80


                 ....*..
gi 194239699 416 KIYVESK 422
Cdd:cd17045   81 EILVEPK 87
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
51-300 3.53e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 67.65  E-value: 3.53e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699  51 SVLVLNSCGITCAGDEkeIAAFcAHVSELDLSDNKLEDwheVSKIVSNVPQLEFLNLSSNplNLSVLERTcAGSFSGVRK 130
Cdd:COG4886  116 ESLDLSGNQLTDLPEE--LANL-TNLKELDLSNNQLTD---LPEPLGNLTNLKSLDLSNN--QLTDLPEE-LGNLTNLKE 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 131 LVLNNSKasWETVHMILQELPDLEELFLCLNDYETVSCPSICCHSLKLLHITDNNLQDWTEIRKLgvmfPSLDTLVLANN 210
Cdd:COG4886  187 LDLSNNQ--ITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPELGNL----TNLEELDLSNN 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 211 HLNAIEEpddsLARLfPNLRSISLHKSGLQSWEdIDKLNSFPKLEEVRLLGIPLLQPYTTEERRKLVIARLPSVSKLNGS 290
Cdd:COG4886  261 QLTDLPP----LANL-TNLKTLDLSNNQLTDLK-LKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLL 334

                        250
                 ....*....|
gi 194239699 291 VVTDGEREDS 300
Cdd:COG4886  335 VTLTTLALSL 344
LRR_9 pfam14580
Leucine-rich repeat;
191-304 8.52e-10

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 57.47  E-value: 8.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699  191 EIRKLG--VMFPSLDTLVLANNHLNAIEEpddSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLqpy 268
Cdd:pfam14580  53 EIRKLDgfPLLRRLKTLLLNNNRICRIGE---GLGEALPNLTELILTNNNLQELGDLDPLASLKKLTFLSLLRNPVT--- 126

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 194239699  269 TTEERRKLVIARLPSVSKLNGSVVTDGEREDSERFF 304
Cdd:pfam14580 127 NKPHYRLYVIYKVPQLRLLDFRKVKQKERQAAEKMF 162
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 72-298 7.99e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 49.78  E-value: 7.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699  72 FCAHVSELDLSDNKLEdwhevsKI--VSNVPQLEFLNLSSNplNLSVLErtcagSFSGVRKLvlnnskaswETVHMILQE 149
Cdd:cd21340   44 FLTNLTHLYLQNNQIE------KIenLENLVNLKKLYLGGN--RISVVE-----GLENLTNL---------EELHIENQR 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 150 LPDLEELFLclnDYETVSCpsiCCHSLKLLHITDNNLQDWTEIRKLgvmfPSLDTLVLANNHLNAIEEpddsLARLfpnl 229
Cdd:cd21340  102 LPPGEKLTF---DPRSLAA---LSNSLRVLNISGNNIDSLEPLAPL----RNLEQLDASNNQISDLEE----LLDL---- 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194239699 230 rsislhksglqswedidkLNSFPKLEEVRLLGIPLLQPYTTEERrklVIARLPSVSKLNGSVVTDGERE 298
Cdd:cd21340  164 ------------------LSSWPSLRELDLTGNPVCKKPKYRDK---IILASKSLEVLDGKEITDTERQ 211
Ubiquitin_2 pfam14560
Ubiquitin-like domain; This entry contains ubiquitin-like domains.
 356-419 3.52e-04

Ubiquitin-like domain; This entry contains ubiquitin-like domains.


Pssm-ID: 405277  Cd Length: 83  Bit Score: 39.05  E-value: 3.52e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 194239699  356 EMSIRLDQTVAELKKQLKTLVQLPTSNMLLYYFDHEAPFgPEEMKYSSRALHSFGIRDGDKIYV 419
Cdd:pfam14560  16 ERRFDKSLTIEELKEKLELITGTPPSSMRLQLYDDDDNL-VAKLDDDDALLGSYGVRDGMRIHV 78
 
Name Accession Description Interval E-value
Ubl_TBCEL cd17045
ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) ...
 337-422 1.89e-44

ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) and similar proteins; TBCEL, also termed leucine-rich repeat-containing protein 35 (LRRC35), or E-like (EL), is a novel regulator of tubulin stability, suggesting a link between tubulin turnover and vesicle transport. TBCEL is abundantly expressed in testis, but is also present in several tissues at a much lower level. It is required for the synchronous movement of the investment cones and is important for normal male fertility. TBCEL shows high sequence similarity to tubulin-specific chaperone cofactor E (TBCE), a component of the multimolecular complex required for tubulin heterodimer formation in all eukaryotic cells. It contains a leucine-rich repeat protein-protein interaction domain and a C-terminal ubiquitin-like (Ubl) domain, but does not harbor the cytoskeleton-associated protein with glycine-rich segment (CAP-Gly) domain found in TBCE.


Pssm-ID: 340565  Cd Length: 87  Bit Score: 149.32  E-value: 1.89e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 337 DLRPQSSAKVEVHFNDQVEEMSIRLDQTVAELKKQLKTLVQLPTSNMLLYYFDHE-APFGPEEMKYSSRALHSFGIRDGD 415
Cdd:cd17045    1 DLTPPKSAKVTVHFEDQVESMDIDLDQTVAELKKQLKNLVGLPPSKMRLYYIDIEmSIFGPEELRFPSRALYSYNIRDGD 80


                 ....*..
gi 194239699 416 KIYVESK 422
Cdd:cd17045   81 EILVEPK 87
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
51-300 3.53e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 67.65  E-value: 3.53e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699  51 SVLVLNSCGITCAGDEkeIAAFcAHVSELDLSDNKLEDwheVSKIVSNVPQLEFLNLSSNplNLSVLERTcAGSFSGVRK 130
Cdd:COG4886  116 ESLDLSGNQLTDLPEE--LANL-TNLKELDLSNNQLTD---LPEPLGNLTNLKSLDLSNN--QLTDLPEE-LGNLTNLKE 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 131 LVLNNSKasWETVHMILQELPDLEELFLCLNDYETVSCPSICCHSLKLLHITDNNLQDWTEIRKLgvmfPSLDTLVLANN 210
Cdd:COG4886  187 LDLSNNQ--ITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPELGNL----TNLEELDLSNN 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 211 HLNAIEEpddsLARLfPNLRSISLHKSGLQSWEdIDKLNSFPKLEEVRLLGIPLLQPYTTEERRKLVIARLPSVSKLNGS 290
Cdd:COG4886  261 QLTDLPP----LANL-TNLKTLDLSNNQLTDLK-LKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLL 334

                        250
                 ....*....|
gi 194239699 291 VVTDGEREDS 300
Cdd:COG4886  335 VTLTTLALSL 344
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
73-259 1.38e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 65.73  E-value: 1.38e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699  73 CAHVSELDLSDNKLEDwheVSKIVSNVPQLEFLNLSSNPLnlsvlertcagsfsgvrklvlnnskaswETVHMILQELPD 152
Cdd:COG4886  112 LTNLESLDLSGNQLTD---LPEELANLTNLKELDLSNNQL----------------------------TDLPEPLGNLTN 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 153 LEELFLCLNDYETVSCPSICCHSLKLLHITDNNLQDW-TEIRKLgvmfPSLDTLVLANNHLNAIEEPddsLARLfPNLRS 231
Cdd:COG4886  161 LKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLpEPLGNL----TNLEELDLSGNQLTDLPEP---LANL-TNLET 232

                        170       180
                 ....*....|....*....|....*...
gi 194239699 232 ISLHKSGLqswEDIDKLNSFPKLEEVRL 259
Cdd:COG4886  233 LDLSNNQL---TDLPELGNLTNLEELDL 257
LRR_9 pfam14580
Leucine-rich repeat;
191-304 8.52e-10

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 57.47  E-value: 8.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699  191 EIRKLG--VMFPSLDTLVLANNHLNAIEEpddSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLqpy 268
Cdd:pfam14580  53 EIRKLDgfPLLRRLKTLLLNNNRICRIGE---GLGEALPNLTELILTNNNLQELGDLDPLASLKKLTFLSLLRNPVT--- 126

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 194239699  269 TTEERRKLVIARLPSVSKLNGSVVTDGEREDSERFF 304
Cdd:pfam14580 127 NKPHYRLYVIYKVPQLRLLDFRKVKQKERQAAEKMF 162
Ubl_TBCE cd17044
ubiquitin-like (Ubl) domain found in tubulin-folding cofactor E (TBCE) and similar proteins; ...
 364-420 2.37e-08

ubiquitin-like (Ubl) domain found in tubulin-folding cofactor E (TBCE) and similar proteins; TBCE, also termed tubulin-specific chaperone E, is a tubulin polymerizing protein involved in the second step of the tubulin folding pathway through cooperating in tubulin heterodimer dissociation both in vivo and in vitro. It may also be implicated in the maintenance of the neuronal microtubule network. Mutations in TBCE gene cause hypoparathyroidism, mental retardation and facial dysmorphism. TBCE contains an N-terminal cytoskeleton-associated protein with glycine-rich segment (CAP-Gly) domain, a leucine-rich repeat protein-protein interaction domain followed by leucine-rich repeat (LRR) domains, and a C-terminal ubiquitin-like (Ubl) domain. Ubiquitin is a protein modifier in eukaryotes that is involved in various cellular processes.


Pssm-ID: 340564  Cd Length: 83  Bit Score: 51.04  E-value: 2.37e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 194239699 364 TVAELKKQLKTLVQLPTSNMLLYYFDHEAPFGPEEMKYSSRALHSFGIRDGDKIYVE 420
Cdd:cd17044   27 TVQKLKGLCERLFKLPASKQRLSYVSSEGPGIEIELDDDLRSLSFYSVEDGDTILVR 83
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 72-298 7.99e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 49.78  E-value: 7.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699  72 FCAHVSELDLSDNKLEdwhevsKI--VSNVPQLEFLNLSSNplNLSVLErtcagSFSGVRKLvlnnskaswETVHMILQE 149
Cdd:cd21340   44 FLTNLTHLYLQNNQIE------KIenLENLVNLKKLYLGGN--RISVVE-----GLENLTNL---------EELHIENQR 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 150 LPDLEELFLclnDYETVSCpsiCCHSLKLLHITDNNLQDWTEIRKLgvmfPSLDTLVLANNHLNAIEEpddsLARLfpnl 229
Cdd:cd21340  102 LPPGEKLTF---DPRSLAA---LSNSLRVLNISGNNIDSLEPLAPL----RNLEQLDASNNQISDLEE----LLDL---- 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194239699 230 rsislhksglqswedidkLNSFPKLEEVRLLGIPLLQPYTTEERrklVIARLPSVSKLNGSVVTDGERE 298
Cdd:cd21340  164 ------------------LSSWPSLRELDLTGNPVCKKPKYRDK---IILASKSLEVLDGKEITDTERQ 211
Ubl_ubiquitin_like cd17039
ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins; Ubiquitin-like ...
 346-419 8.57e-07

ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins; Ubiquitin-like (Ubl) proteins have a similar ubiquitin (Ub) beta-grasp fold and attach to other proteins in a Ubl manner but with biochemically distinct roles. Ub and Ubl proteins conjugate and deconjugate via ligases and peptidases to covalently modify target polypeptides. Some Ubl domains have adaptor roles in Ub-signaling by mediating protein-protein interaction. Prokaryotic sulfur carrier proteins are Ub-related proteins that can be activated in an ATP-dependent manner. Polyubiquitination signals for a diverse set of cellular events via different isopeptide linkages formed between the C terminus of one ubiquitin (Ub) and the epsilon-amine of K6, K11, K27, K29, K33, K48, or K63 of a second Ub. One of these seven lysine residues (K27, Ub numbering) is conserved in this Ubl_ubiquitin_like family. K27-linked Ub chains are versatile and can be recognized by several downstream receptor proteins. K27 has roles beyond chain linkage, such as in Ubl NEDD8 (which contains many of the same lysines (K6, K11, K27, K33, K48) as Ub) where K27 has a role (other than conjugation) in the mechanism of protein neddylation.


Pssm-ID: 340559 [Multi-domain]  Cd Length: 68  Bit Score: 46.05  E-value: 8.57e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 194239699 346 VEVHFND-QVEEMSIRLDQTVAELKKQLKTLVQLPTSNMLLYYFDheapfgpEEMKySSRALHSFGIRDGDKIYV 419
Cdd:cd17039    1 ITVKTLDgKTYTVEVDPDDTVADLKEKIEEKTGIPVEQQRLIYNG-------KELK-DDKTLSDYGIKDGSTIHL 67
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
78-255 9.98e-05

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 44.54  E-value: 9.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699  78 ELDLSDNKLEDWHEVskiVSNVPQLEFLNLSSNplNLSVLERTCAGsFSGVRKLVLNNSKASWETVhmiLQELPDLEELF 157
Cdd:COG4886  186 ELDLSNNQITDLPEP---LGNLTNLEELDLSGN--QLTDLPEPLAN-LTNLETLDLSNNQLTDLPE---LGNLTNLEELD 256

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194239699 158 LCLNDYETVScPSICCHSLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLNAIEEPDDSLARLFPNLRSISLHKS 237
Cdd:COG4886  257 LSNNQLTDLP-PLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLV 335

                        170
                 ....*....|....*...
gi 194239699 238 GLQSWEDIDKLNSFPKLE 255
Cdd:COG4886  336 TLTTLALSLSLLALLTLL 353
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 50-112 1.05e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 43.24  E-value: 1.05e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 194239699  50 PSVLVLN--SCGITcagDEKEIAAFCaHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNLSSNPL 112
Cdd:cd21340  120 NSLRVLNisGNNID---SLEPLAPLR-NLEQLDASNNQISDLEELLDLLSSWPSLRELDLTGNPV 180
Ubl_TBCB cd01789
ubiquitin-like (Ubl) domain found in tubulin-folding cofactor B (TBCB) and similar proteins; ...
 361-419 1.09e-04

ubiquitin-like (Ubl) domain found in tubulin-folding cofactor B (TBCB) and similar proteins; TBCB, also termed cytoskeleton-associated protein 1, or cytoskeleton-associated protein CKAPI, or tubulin-specific chaperone B, is one of protein cofactors A through E that is required for the folding of tubulins prior to their incorporation into microtubules and heterodimer assembly. TBCB comprises an N-terminal ubiquitin-like (Ubl) domain and a C-terminal cytoskeleton-associated protein with glycine-rich segment (CAP-Gly) domain. The Ubl domain of TBCB is essential for proper folding and assembly of tubulin alpha. It has a beta-grasp Ubl fold, a common structure involved in protein-protein interactions. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. TBC-A through E are necessary for the biogenesis of microtubules and for cell viability.


Pssm-ID: 340487  Cd Length: 80  Bit Score: 40.63  E-value: 1.09e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 194239699 361 LDQTVAELKKQLKTLVQLPTSNMLLYYFDHEAPFgPEEMKYSSRALHSFGIRDGDKIYV 419
Cdd:cd01789   21 LSLTIGELKEKLELITGTPPSSMKLQLYDEDGKL-IGTLDDDDALLGSYPVRDGMRIHV 78
Ubiquitin_2 pfam14560
Ubiquitin-like domain; This entry contains ubiquitin-like domains.
 356-419 3.52e-04

Ubiquitin-like domain; This entry contains ubiquitin-like domains.


Pssm-ID: 405277  Cd Length: 83  Bit Score: 39.05  E-value: 3.52e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 194239699  356 EMSIRLDQTVAELKKQLKTLVQLPTSNMLLYYFDHEAPFgPEEMKYSSRALHSFGIRDGDKIYV 419
Cdd:pfam14560  16 ERRFDKSLTIEELKEKLELITGTPPSSMRLQLYDDDDNL-VAKLDDDDALLGSYGVRDGMRIHV 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH