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NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial isoform 1 [Mus musculus]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
74-463
0e+00
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 754.68
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 74 E KAVT N M TLNFGPQHPAAHGVLRL V LEL S GE M V RKC DPHIG L LHRGTEKL I EY K TYLQA L PYFDRLDYVS M M C NE Q AY SI 153
Cdd:PRK06075 1 E AEIR N Y TLNFGPQHPAAHGVLRL I LEL D GE V V VRA DPHIG Y LHRGTEKL A EY R TYLQA I PYFDRLDYVS P M N NE H AY CL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 154 AVEKLL N I QP P P RAQ W IRVLF G E IT RIL N H IMAVT THALD I GAMT P F F W M F E EREK MFEF YE R V S GARMH A AYIRPGGV H 233
Cdd:PRK06075 81 AVEKLL G I EV P E RAQ Y IRVLF L E LN RIL S H LLWLG THALD L GAMT V F L W G F R EREK LLDL YE A V T GARMH H AYIRPGGV R 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 234 Q DLP L GLL D DI YE F SKN F SL R I D EV E EM LT N NRIW RN R T V DI GVV TA E D AL NY GF S G V MLR G SG IQ WDLRK T QPY D VYD Q 313
Cdd:PRK06075 161 R DLP D GLL E DI RD F LDY F PK R L D DY E TL LT D NRIW KQ R L V GV GVV SK E R AL AL GF T G P MLR A SG VA WDLRK S QPY E VYD E 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 314 VE FDVP I G SR GDCYDRYL C RVEEMRQSLRIIEQCL NKM -- PPG EIK VDD A K VS PP K R A EMKTSME S LIHHFKL Y TEG YQ V 391
Cdd:PRK06075 241 LD FDVP V G KN GDCYDRYL V RVEEMRQSLRIIEQCL DRL rp PPG PVM VDD P K IA PP A R L EMKTSME A LIHHFKL V TEG FR V 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 23346461 392 P P G AT Y T A I E A PKGEFGVYLVSDG SSR PYR C KI K AP G FAHL AG LD K M SK GHMLADVVAIIG TQ DIVFGE I DR 463
Cdd:PRK06075 321 P A G EV Y A A V E S PKGEFGVYLVSDG GNK PYR V KI R AP S FAHL QA LD E M CR GHMLADVVAIIG SL DIVFGE V DR 392
Name
Accession
Description
Interval
E-value
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
74-463
0e+00
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 754.68
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 74 E KAVT N M TLNFGPQHPAAHGVLRL V LEL S GE M V RKC DPHIG L LHRGTEKL I EY K TYLQA L PYFDRLDYVS M M C NE Q AY SI 153
Cdd:PRK06075 1 E AEIR N Y TLNFGPQHPAAHGVLRL I LEL D GE V V VRA DPHIG Y LHRGTEKL A EY R TYLQA I PYFDRLDYVS P M N NE H AY CL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 154 AVEKLL N I QP P P RAQ W IRVLF G E IT RIL N H IMAVT THALD I GAMT P F F W M F E EREK MFEF YE R V S GARMH A AYIRPGGV H 233
Cdd:PRK06075 81 AVEKLL G I EV P E RAQ Y IRVLF L E LN RIL S H LLWLG THALD L GAMT V F L W G F R EREK LLDL YE A V T GARMH H AYIRPGGV R 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 234 Q DLP L GLL D DI YE F SKN F SL R I D EV E EM LT N NRIW RN R T V DI GVV TA E D AL NY GF S G V MLR G SG IQ WDLRK T QPY D VYD Q 313
Cdd:PRK06075 161 R DLP D GLL E DI RD F LDY F PK R L D DY E TL LT D NRIW KQ R L V GV GVV SK E R AL AL GF T G P MLR A SG VA WDLRK S QPY E VYD E 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 314 VE FDVP I G SR GDCYDRYL C RVEEMRQSLRIIEQCL NKM -- PPG EIK VDD A K VS PP K R A EMKTSME S LIHHFKL Y TEG YQ V 391
Cdd:PRK06075 241 LD FDVP V G KN GDCYDRYL V RVEEMRQSLRIIEQCL DRL rp PPG PVM VDD P K IA PP A R L EMKTSME A LIHHFKL V TEG FR V 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 23346461 392 P P G AT Y T A I E A PKGEFGVYLVSDG SSR PYR C KI K AP G FAHL AG LD K M SK GHMLADVVAIIG TQ DIVFGE I DR 463
Cdd:PRK06075 321 P A G EV Y A A V E S PKGEFGVYLVSDG GNK PYR V KI R AP S FAHL QA LD E M CR GHMLADVVAIIG SL DIVFGE V DR 392
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
79-463
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 725.71
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 79 N M T LN F GPQHP AA HGVLRLVLEL S GE M V RKC DPHIG L LHRG T EKL I E YK TY L Q AL PY F DRLDY V S M M C NE Q AY SI AVEKL 158
Cdd:COG0649 6 E M V LN M GPQHP ST HGVLRLVLEL D GE T V VDA DPHIG Y LHRG F EKL A E NR TY T Q II PY T DRLDY L S P M N NE L AY VL AVEKL 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 159 L N I QP P P RAQ W IRV LFG E IT RI LN H IMAVT T H ALD I GAMTPF FWM F E EREK MFEFY E R V S GARM HAA Y I R P GGV HQ DLP L 238
Cdd:COG0649 86 L G I EV P E RAQ Y IRV ILA E LN RI AS H LLWLG T Y ALD L GAMTPF LYA F R EREK ILDLF E E V T GARM THN Y F R I GGV RR DLP D 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 239 G L L DDIY EF SKN F SL R I DE V E EM LT N NRI WRN RT VDI GV VT AEDA LNY G FS G VM LR G SG IQW DLRK TQ PY DV YD QVE FDV 318
Cdd:COG0649 166 G F L EKVR EF LDY F PK R L DE Y E DL LT G NRI FKA RT KGV GV LS AEDA IAL G VT G PV LR A SG VDY DLRK DE PY SG YD ELD FDV 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 319 P I G SR GDCYDRYL C R V EEMRQSLRII E QCL N K M P P G EIKVD D A K VS PP KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y T 398
Cdd:COG0649 246 P V G TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E G PVMAK D P K IA PP PKE EMKTSME A LIHHFKL V TEG FK VP A G EV Y A 325
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23346461 399 A I E A P K GE F G V YLVSDG SSR PYR C KI KA P G FA H L AG L DK M S KGHMLADVVAI I G TQ DIV F GE I DR 463
Cdd:COG0649 326 A V E S P R GE L G F YLVSDG GTK PYR V KI RS P S FA N L QA L PE M L KGHMLADVVAI L G SL DIV L GE V DR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
79-463
0e+00
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 650.17
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 79 N M T LN F GPQHP AA HGVLRL V LEL S GE M V RKC DPHIG L LHRGTEKL I E YK TY L Q AL PY F DRLDY V S MMC NE Q AY SI AVEKL 158
Cdd:TIGR01962 2 F M I LN L GPQHP ST HGVLRL I LEL D GE Y V VRA DPHIG Y LHRGTEKL A E NR TY Q Q YI PY T DRLDY L S PFS NE L AY CL AVEKL 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 159 L N I QP P P RAQ W IRV LFG E IT RI LN H IMAVT THALD I GAMTPF FWM F E EREK MFEFY E RVS GARMH A AY I R P GGV HQ DLP L 238
Cdd:TIGR01962 82 L G I EV P R RAQ V IRV MLS E LN RI SS H LLFIG THALD L GAMTPF LYA F R EREK ILDLF E AIT GARMH S AY F R I GGV AL DLP E 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 239 GL L DD I Y EF SKN F SL R IDEV E EM L TN NRIW RN RT VDI GVV T A E DAL NY G FS G V MLRGSGI Q WD L RK TQ PY DV YD QVE FDV 318
Cdd:TIGR01962 162 NW L EE I R EF LEQ F PK R LRDY E TL L NE NRIW KQ RT QGV GVV S A K DAL DW G LT G P MLRGSGI D WD I RK SE PY EG YD EYD FDV 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 319 P I G SR GDCYDRYL C RV E EMR Q S LR IIEQCL N KMPPG E IK V D DA K VS PP KRAE M K TSME S LIHHFKL Y TEG YQ VP P G AT Y T 398
Cdd:TIGR01962 242 P V G GN GDCYDRYL L RV L EMR E S IK IIEQCL E KMPPG P IK A D NP K LA PP PKER M L TSME A LIHHFKL V TEG FR VP A G EV Y V 321
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23346461 399 A IE A PKGE F G V Y LV SDG SSR PYR C KI K AP G FAHL AG L DK M SK GH M LAD VV AI I G TQ D I V F GE I DR 463
Cdd:TIGR01962 322 P IE S PKGE L G F Y II SDG GTK PYR L KI R AP S FAHL QA L EA M CV GH Y LAD LI AI L G SI D P V M GE V DR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
194-463
0e+00
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 538.51
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 194 I GAMTPF FWM F E EREK MFEFY ER VS GARM HAA Y I RPGGV HQ DLP L G L L DD I Y EF SKN F SL R I DE V E EM LT N NRI WRN RT V 273
Cdd:pfam00346 1 L GAMTPF LYA F R EREK ILDLF ER IT GARM THS Y F RPGGV AR DLP E G F L EK I R EF LDY F PK R L DE Y E DL LT R NRI FKD RT K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 274 DI GV VT AEDAL NY G FS G V MLR G SG IQ WDLRK TQ PY DV YD QVE FDVP I G SR GDCYDRYL C R V EEMRQSLRII E QCL N K M P P 353
Cdd:pfam00346 81 GV GV LS AEDAL AL G VT G P MLR A SG VP WDLRK DE PY SG YD ELD FDVP V G TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 354 G EIKV DD A K VSP P KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y T A I EAPKGE F G V YLVSDG SSR PYR C KI K AP G FA H L A 433
Cdd:pfam00346 161 G PVMA DD P K IAL P PKE EMKTSME A LIHHFKL V TEG FR VP A G EV Y V A V EAPKGE L G F YLVSDG GTK PYR V KI R AP S FA N L Q 240
250 260 270
....*....|....*....|....*....|
gi 23346461 434 G L DK M S KGHMLADVVAIIG TQ DIV F GE I DR 463
Cdd:pfam00346 241 A L PE M C KGHMLADVVAIIG SI DIV M GE V DR 270
Name
Accession
Description
Interval
E-value
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
74-463
0e+00
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 754.68
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 74 E KAVT N M TLNFGPQHPAAHGVLRL V LEL S GE M V RKC DPHIG L LHRGTEKL I EY K TYLQA L PYFDRLDYVS M M C NE Q AY SI 153
Cdd:PRK06075 1 E AEIR N Y TLNFGPQHPAAHGVLRL I LEL D GE V V VRA DPHIG Y LHRGTEKL A EY R TYLQA I PYFDRLDYVS P M N NE H AY CL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 154 AVEKLL N I QP P P RAQ W IRVLF G E IT RIL N H IMAVT THALD I GAMT P F F W M F E EREK MFEF YE R V S GARMH A AYIRPGGV H 233
Cdd:PRK06075 81 AVEKLL G I EV P E RAQ Y IRVLF L E LN RIL S H LLWLG THALD L GAMT V F L W G F R EREK LLDL YE A V T GARMH H AYIRPGGV R 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 234 Q DLP L GLL D DI YE F SKN F SL R I D EV E EM LT N NRIW RN R T V DI GVV TA E D AL NY GF S G V MLR G SG IQ WDLRK T QPY D VYD Q 313
Cdd:PRK06075 161 R DLP D GLL E DI RD F LDY F PK R L D DY E TL LT D NRIW KQ R L V GV GVV SK E R AL AL GF T G P MLR A SG VA WDLRK S QPY E VYD E 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 314 VE FDVP I G SR GDCYDRYL C RVEEMRQSLRIIEQCL NKM -- PPG EIK VDD A K VS PP K R A EMKTSME S LIHHFKL Y TEG YQ V 391
Cdd:PRK06075 241 LD FDVP V G KN GDCYDRYL V RVEEMRQSLRIIEQCL DRL rp PPG PVM VDD P K IA PP A R L EMKTSME A LIHHFKL V TEG FR V 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 23346461 392 P P G AT Y T A I E A PKGEFGVYLVSDG SSR PYR C KI K AP G FAHL AG LD K M SK GHMLADVVAIIG TQ DIVFGE I DR 463
Cdd:PRK06075 321 P A G EV Y A A V E S PKGEFGVYLVSDG GNK PYR V KI R AP S FAHL QA LD E M CR GHMLADVVAIIG SL DIVFGE V DR 392
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
79-463
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 725.71
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 79 N M T LN F GPQHP AA HGVLRLVLEL S GE M V RKC DPHIG L LHRG T EKL I E YK TY L Q AL PY F DRLDY V S M M C NE Q AY SI AVEKL 158
Cdd:COG0649 6 E M V LN M GPQHP ST HGVLRLVLEL D GE T V VDA DPHIG Y LHRG F EKL A E NR TY T Q II PY T DRLDY L S P M N NE L AY VL AVEKL 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 159 L N I QP P P RAQ W IRV LFG E IT RI LN H IMAVT T H ALD I GAMTPF FWM F E EREK MFEFY E R V S GARM HAA Y I R P GGV HQ DLP L 238
Cdd:COG0649 86 L G I EV P E RAQ Y IRV ILA E LN RI AS H LLWLG T Y ALD L GAMTPF LYA F R EREK ILDLF E E V T GARM THN Y F R I GGV RR DLP D 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 239 G L L DDIY EF SKN F SL R I DE V E EM LT N NRI WRN RT VDI GV VT AEDA LNY G FS G VM LR G SG IQW DLRK TQ PY DV YD QVE FDV 318
Cdd:COG0649 166 G F L EKVR EF LDY F PK R L DE Y E DL LT G NRI FKA RT KGV GV LS AEDA IAL G VT G PV LR A SG VDY DLRK DE PY SG YD ELD FDV 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 319 P I G SR GDCYDRYL C R V EEMRQSLRII E QCL N K M P P G EIKVD D A K VS PP KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y T 398
Cdd:COG0649 246 P V G TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E G PVMAK D P K IA PP PKE EMKTSME A LIHHFKL V TEG FK VP A G EV Y A 325
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23346461 399 A I E A P K GE F G V YLVSDG SSR PYR C KI KA P G FA H L AG L DK M S KGHMLADVVAI I G TQ DIV F GE I DR 463
Cdd:COG0649 326 A V E S P R GE L G F YLVSDG GTK PYR V KI RS P S FA N L QA L PE M L KGHMLADVVAI L G SL DIV L GE V DR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
79-463
0e+00
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 650.17
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 79 N M T LN F GPQHP AA HGVLRL V LEL S GE M V RKC DPHIG L LHRGTEKL I E YK TY L Q AL PY F DRLDY V S MMC NE Q AY SI AVEKL 158
Cdd:TIGR01962 2 F M I LN L GPQHP ST HGVLRL I LEL D GE Y V VRA DPHIG Y LHRGTEKL A E NR TY Q Q YI PY T DRLDY L S PFS NE L AY CL AVEKL 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 159 L N I QP P P RAQ W IRV LFG E IT RI LN H IMAVT THALD I GAMTPF FWM F E EREK MFEFY E RVS GARMH A AY I R P GGV HQ DLP L 238
Cdd:TIGR01962 82 L G I EV P R RAQ V IRV MLS E LN RI SS H LLFIG THALD L GAMTPF LYA F R EREK ILDLF E AIT GARMH S AY F R I GGV AL DLP E 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 239 GL L DD I Y EF SKN F SL R IDEV E EM L TN NRIW RN RT VDI GVV T A E DAL NY G FS G V MLRGSGI Q WD L RK TQ PY DV YD QVE FDV 318
Cdd:TIGR01962 162 NW L EE I R EF LEQ F PK R LRDY E TL L NE NRIW KQ RT QGV GVV S A K DAL DW G LT G P MLRGSGI D WD I RK SE PY EG YD EYD FDV 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 319 P I G SR GDCYDRYL C RV E EMR Q S LR IIEQCL N KMPPG E IK V D DA K VS PP KRAE M K TSME S LIHHFKL Y TEG YQ VP P G AT Y T 398
Cdd:TIGR01962 242 P V G GN GDCYDRYL L RV L EMR E S IK IIEQCL E KMPPG P IK A D NP K LA PP PKER M L TSME A LIHHFKL V TEG FR VP A G EV Y V 321
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23346461 399 A IE A PKGE F G V Y LV SDG SSR PYR C KI K AP G FAHL AG L DK M SK GH M LAD VV AI I G TQ D I V F GE I DR 463
Cdd:TIGR01962 322 P IE S PKGE L G F Y II SDG GTK PYR L KI R AP S FAHL QA L EA M CV GH Y LAD LI AI L G SI D P V M GE V DR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
194-463
0e+00
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 538.51
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 194 I GAMTPF FWM F E EREK MFEFY ER VS GARM HAA Y I RPGGV HQ DLP L G L L DD I Y EF SKN F SL R I DE V E EM LT N NRI WRN RT V 273
Cdd:pfam00346 1 L GAMTPF LYA F R EREK ILDLF ER IT GARM THS Y F RPGGV AR DLP E G F L EK I R EF LDY F PK R L DE Y E DL LT R NRI FKD RT K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 274 DI GV VT AEDAL NY G FS G V MLR G SG IQ WDLRK TQ PY DV YD QVE FDVP I G SR GDCYDRYL C R V EEMRQSLRII E QCL N K M P P 353
Cdd:pfam00346 81 GV GV LS AEDAL AL G VT G P MLR A SG VP WDLRK DE PY SG YD ELD FDVP V G TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 354 G EIKV DD A K VSP P KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y T A I EAPKGE F G V YLVSDG SSR PYR C KI K AP G FA H L A 433
Cdd:pfam00346 161 G PVMA DD P K IAL P PKE EMKTSME A LIHHFKL V TEG FR VP A G EV Y V A V EAPKGE L G F YLVSDG GTK PYR V KI R AP S FA N L Q 240
250 260 270
....*....|....*....|....*....|
gi 23346461 434 G L DK M S KGHMLADVVAIIG TQ DIV F GE I DR 463
Cdd:pfam00346 241 A L PE M C KGHMLADVVAIIG SI DIV M GE V DR 270
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
80-463
1.92e-153
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 440.29
E-value: 1.92e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 80 M T LN F GPQHP AA HGV L RLVL ELS GE MVRKCD P H IG L LHRGTEKL I E YKT Y L Q AL PY F DR L DY V S M M C N EQA Y SI AVE KLL 159
Cdd:PRK12322 7 M L LN V GPQHP ST HGV F RLVL KID GE IIVEAT P V IG Y LHRGTEKL A E SLQ Y T Q II PY T DR M DY L S A M T N NYV Y CH AVE TMM 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 160 NIQP P P RA QWI RV LFG E IT RI LN H IMAVT T HA LDIGA MT PF FWM F E ERE KMFEFYERVS GAR MHAA Y I R P GGV HQ D L P L G 239
Cdd:PRK12322 87 GLEV P E RA EYL RV IAM E LG RI AS H LVWWG T YL LDIGA VS PF LYA F R ERE MIINLLNELC GAR LTFN Y M R I GGV KW D A P D G 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 240 LLDDIY EF SKNFSLRIDEVEEML T N N R I WR NR TVDI G VVT AE D A LN Y GF SGV M LR GS G IQ WDLRK TQ PY DV YD QVE FD V P 319
Cdd:PRK12322 167 WIEKVK EF VPYMREQLAGYHDLV T G N E I FL NR VKGV G IYS AE E A IS Y SL SGV N LR CT G VN WDLRK DE PY SI YD RFD FD I P 246
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 320 I GS R GDC Y DRY L CR VE E MR QSL R IIEQ CLNKM P P - G EIK vdd AKV sp PK raemktsmes L I hhfklytegy QV P P G AT Y T 398
Cdd:PRK12322 247 V GS V GDC W DRY V CR MQ E IE QSL K IIEQ AVEQF P K e G PVL --- AKV -- PK ---------- I I ---------- KA P K G EA Y V 301
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23346461 399 A IE A P K GE F G V Y LV SDG SSR PYR C K IKA P G F AH L AG L D K MS KG HML A DVV AI I G TQ DIV F GE I D R 463
Cdd:PRK12322 302 R IE S P R GE I G C Y IA SDG KKK PYR L K FRR P S F YN L QI L P K LL KG ENI A NLI AI L G SI DIV L GE V D G 366
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
80-463
5.71e-146
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 428.96
E-value: 5.71e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 80 M T LN F GP Q HP A AHG VL R L VL E L S GE MVRK C D P H IG LL HRG T EK LI E YKTYLQAL PY F DR L DY VSMMC NE QA Y SI AVEKL L 159
Cdd:PRK11742 192 M F LN L GP N HP S AHG AF R I VL Q L D GE EIVD C V P D IG YH HRG A EK MG E RQSWHSYI PY T DR I DY LGGCM NE MP Y VL AVEKL A 271
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 160 N I QP P P R AQW IRV LFG E IT RI LN H IMAVT T HAL D I GAMTP F F WM F EE R E K MFEFY E RVS G A RMH A A YI R P GGV HQ DLP L G 239
Cdd:PRK11742 272 G I TV P D R VNV IRV MLS E LF RI NS H LLYIG T FIQ D V GAMTP V F FA F TD R Q K IYDVI E AIT G F RMH P A WF R I GGV AH DLP R G 351
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 240 LLDDIY EF SKNFSL R I DE V E EMLTN N R I WRN RT VDIGVVT A ED AL NY G FS G VM LR GS GI QW D L RK TQ PY DV Y DQVE F D VP 319
Cdd:PRK11742 352 WDRLLR EF LDWMPK R L DE Y E KAALR N S I LKG RT QGVAAYN A KE AL EW G VT G AG LR AT GI DF D V RK AR PY SG Y ENFD F E VP 431
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 320 I G SR GDCYDR YLCR VEEMRQSLRIIEQCL NK MP P G EI K V D DAKVS PP KRAEMKTSM E S LI H HF KLYTE G YQV P PGATYTA 399
Cdd:PRK11742 432 V G GN GDCYDR VMVK VEEMRQSLRIIEQCL DN MP E G PF K A D HPLTT PP PKERTLQHI E T LI T HF LQVSW G PVM P ANESFQM 511
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23346461 400 IEA P KG EFGV YL V SDGS SRP YR CK I KA P G FAHL AGLDKMSK G HMLA D VVAII G TQ D I V FGEI DR 463
Cdd:PRK11742 512 IEA T KG INSY YL T SDGS TMS YR TR I RT P S FAHL QQIPSVIR G SLVS D LIVYL G SI D F V MSDV DR 575
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
62-463
5.79e-144
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 430.74
E-value: 5.79e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 62 K P P P WN D vd ILKEKAVTNMT LN F GPQHP AA HG VL R L VL E L S GE MVRKC D PH IG LL HRG T EK LI E YKTYL Q AL PY F DR L DY 141
Cdd:PRK13292 389 Q P L P AG D -- FFDRVDEETLI LN L GPQHP GT HG II R F VL K L D GE EIVDM D SD IG YH HRG A EK IG E RQHWN Q FI PY T DR I DY 466
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 142 VSMMC N EQ AY SIA VE K L LN I QP P P RA QW IRV LFG E IT RI L NH IMAVT T H A L D I GAMTP F F WM F EE REK M F EFY E RVS G A R 221
Cdd:PRK13292 467 LAGVQ N NL AY VNS VE T L CG I EV P D RA IY IRV MLS E LF RI A NH LVWLG T F A A D V GAMTP V F YT F TD REK I F DIV E MIT G G R 546
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 222 MH A A YI R P GGV HQ DLP L G LLDDIYE F SKN F SL R ID E V E EM LT N N R I WRN R TVDI GV V T AED A LNY G F SG VM LR GS G IQ WD 301
Cdd:PRK13292 547 MH P A WF R I GGV AE DLP E G WKEAVEA F LRW F PG R LK E Y E DL LT G N P I FKA R LKGV GV I T RDE A VEW G I SG PN LR AC G LA WD 626
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 302 LRK TQ PY DV YD QVE F D VP IGSR GDCY D RYL C R V EEMRQSLRI IE Q CLNK MP P G EIKV DD AKVSP P KRAEMKTSM ESLIHH 381
Cdd:PRK13292 627 LRK KM PY GG YD RFD F E VP TAEG GDCY A RYL V R M EEMRQSLRI VR Q AAAG MP G G RWIS DD YRYVL P QKRDTLKDI ESLIHH 706
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 382 F KLY T E G YQV P P G AT Y T AIEAPKGE F G VYL VSDG SSRP YR CK I KA P G F A H LAG L DKM S K G HML AD VV AIIG TQ D I V FGEI 461
Cdd:PRK13292 707 F VNV T R G PAP P K G EC Y A AIEAPKGE N G YFV VSDG LNIA YR MR I RT P S F P H IQA L PLL S R G WLV AD FL AIIG SI D F V LADL 786
..
gi 23346461 462 DR 463
Cdd:PRK13292 787 DR 788
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
80-463
8.43e-122
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 360.59
E-value: 8.43e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 80 M T LNFGP Q HP AA HGVLRL VLE L S GE M V RK C D P H IG L LHRG T EK LI E YK T YLQAL PY FD R L DY VSM M C NE QAYSI A V EKL L 159
Cdd:PRK07415 11 M V LNFGP H HP SM HGVLRL IVT L D GE D V VD C E P V IG Y LHRG M EK IA E NR T NVMYV PY VS R W DY AAG M F NE AITVN A P EKL A 90
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 160 NI QP P P RA QW IRV LFG E IT RI L NH IMAVTTHAL D I GA M TPFF WM F E ERE KMFEFY E RVS G A R M - HAA Y I R P GGV HQ DLP L 238
Cdd:PRK07415 91 NI PV P K RA SY IRV IML E LN RI A NH LLWLGPFLA D V GA Q TPFF YI F R ERE MIYDLW E AAT G Q R L i NNN Y F R I GGV AA DLP Y 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 239 G L L DDIYE F SKN F SLR IDE V E EML TNN R I W R N R TVDI G VVTA E D A L N Y G F SG V MLR G SG IQ WDLRK TQP Y DV YD QVEF DV 318
Cdd:PRK07415 171 G W L EKCLD F CDY F GPK IDE Y E KLI TNN P I F R R R IEGL G TISR E E A I N W G L SG P MLR A SG VK WDLRK VDH Y EC YD DFDW DV 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 319 PIGSR GDC YD RY LC R V EEMR Q S LR II E Q CLNKM P P G EIKVDD AK vspp KR AE M K T S - MESLIHHF -- K LYTEGYQV P P G A 395
Cdd:PRK07415 251 AWETE GDC LA RY RV R I EEMR E S VK II R Q ACKGI P G G PYENLE AK ---- RM AE G K K S e WNGFDYQY va K KVAPTFKI P N G E 326
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 23346461 396 T Y TAI E AP KGE F G VYLVSDGSSR P Y R C KI K A PG F AH L AG L DKMS KG HML AD VV AI I G TQ D IVF G EI DR 463
Cdd:PRK07415 327 L Y VRL E SG KGE L G IFIQGNNDVT P W R W KI R A AD F NN L QI L PHLL KG AKV AD IM AI L G SI D VIM G SV DR 394
ndhH
CHL00017 NADH dehydrogenase subunit 7
80-463
1.49e-113
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 339.75
E-value: 1.49e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 80 M TL N F GP Q HP AA HGVLRL VLE L S GE M V RK C D P HI G L LHRG T EK LI E YK T YL Q A LPY FD R L DY VSM M CN E QAYSI A V E K L L 159
Cdd:CHL00017 11 M IV N M GP H HP SM HGVLRL IVT L D GE D V ID C E P IL G Y LHRG M EK IA E NR T II Q Y LPY VT R W DY LAT M FT E AITVN A P E Q L G 90
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 160 NIQ P P P RA QW IRV LFG E IT RI LN H IMAVTTHAL DIGA M TPFF WM F E ERE KMFEFY E RVS G A RM HAA Y I R P GGV HQ DLP L G 239
Cdd:CHL00017 91 NIQ V P K RA SY IRV IML E LS RI AS H LLWLGPFMA DIGA Q TPFF YI F R ERE LIYDLF E AAT G M RM MHN Y F R I GGV AA DLP Y G 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 240 LL D DIYE F SKN F SLRID E VEEML T N N R I WRN R TVDI G VVTA E D A L N Y G F SG V MLR G SGIQWDLRK TQP Y DV YD QVEFD V P 319
Cdd:CHL00017 171 WI D KCLD F CDY F LTGVA E YQKLI T R N P I FLE R VEGV G IIGG E E A I N W G L SG P MLR A SGIQWDLRK VDH Y EC YD EFDWE V Q 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 320 IGSR GD CYD RYL C R VE EM RQ S LR II E Q C L NKM P P G EIKVDD A KVSPPKRAEMKTSM E sli HH F -- K LYTEGYQVPPGAT Y 397
Cdd:CHL00017 251 WQKE GD SLA RYL V R IG EM TE S IK II Q Q A L EGI P G G PYENLE A RRFDREKDSEWNDF E --- YR F is K KPSPTFELSKQEL Y 327
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 23346461 398 TAI EAPKGE F G VY L VS D G S SR P Y R C KI KA PGF AH L AG L DKMS K GHM LAD VVA I I G TQ DI VF GE I DR 463
Cdd:CHL00017 328 VRV EAPKGE L G IF L IG D D S VF P W R W KI RP PGF IN L QI L PQLV K RMK LAD IMT I L G SI DI IM GE V DR 393
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
62-453
9.06e-94
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 291.88
E-value: 9.06e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 62 K PPP WNDVDIL K EKAVTNMTLNF GP Q H PAAHGVLRLVLELS GE MVRKCDPHI G LL HRG T EKL I E YKT Y L QAL PYFD R ldy 141
Cdd:COG3261 105 P PPP PPEEPEM K VEGEGVHEIPV GP V H AGLIEPGHFRFSVE GE RILDLEIRL G YV HRG I EKL A E GRD Y E QAL YLAE R --- 181
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 142 VSMM C --- NEQ AY SI AVEK LLN I QP PPRAQ WI RV LFG E IT RI LN H IMAVTTH A L D I G AM T P F FWMFEE RE KMFEFY E RVS 218
Cdd:COG3261 182 ICGI C sva HAL AY CQ AVEK AAG I EV PPRAQ YL RV ILL E LE RI HS H LLDLGAL A N D V G FE T L F MQCWRL RE RVLDLN E ALT 261
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 219 G A R MHAAYIR PGGV HQ DL PLGL L DD I Y E FSKNFSLRID E VEEMLT N NRIWRN R T V DI GV VTA EDA LNY G FS G VML R G SG I 298
Cdd:COG3261 262 G N R VLRGINV PGGV RR DL DPEQ L KA I L E RLDELEEEVK E LVDLFL N DPSVLD R L V GT GV LSK EDA RDL G AV G PVA R A SG V 341
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23346461 299 QW D L R KTQ PY DV YD QVE F D V PIGSR GD C Y D R Y L C R V EE MRQ SL RI I E Q C L N K M P P G E I K V ddakvs P PKRA emktsmesl 378
Cdd:COG3261 342 DR D V R RDH PY AA YD ELD F K V VTETE GD V Y A R A L V R L EE IFE SL DL I R Q A L E K L P E G P I R V ------ P VPGL --------- 406
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23346461 379 ihhfklytegyq V P P G ATYTAI EAP K GE FGV Y LVS DG SS R PY R C KI KA P G FA HLAG L DKMSK G HML AD VVA I IGT 453
Cdd:COG3261 407 ------------ P P D G EGLGRV EAP R GE LVH Y VRT DG DG R LE R V KI RT P S FA NWPA L ELALR G NIV AD FPL I NKS 469
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
