capsid protein [Beet ringspot virus]
Nepo_coat and Nepo_coat_C domain-containing protein( domain architecture ID 10506154)
Nepo_coat and Nepo_coat_C domain-containing protein
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
Nepo_coat | pfam03391 | Nepovirus coat protein, central domain; The members of this family are derived from ... |
170-333 | 3.70e-69 | ||||
Nepovirus coat protein, central domain; The members of this family are derived from nepoviruses. Together with comoviruses and picornaviruses, nepoviruses are classified in the picornavirus superfamily of plus strand single-stranded RNA viruses. This family aligns several nepovirus coat protein sequences. In several cases, this is found at the C-terminus of the RNA2-encoded viral polyprotein. The coat protein consists of three trapezoid-shaped beta-barrel domains, and forms a pseudo T = 3 icosahedral capsid structure. : Pssm-ID: 397456 Cd Length: 167 Bit Score: 219.17 E-value: 3.70e-69
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Nepo_coat_C | pfam03688 | Nepovirus coat protein, C-terminal domain; The members of this family are derived from ... |
339-501 | 2.89e-65 | ||||
Nepovirus coat protein, C-terminal domain; The members of this family are derived from nepoviruses. Together with comoviruses and picornaviruses, nepoviruses are classified in the picornavirus superfamily of plus strand single-stranded RNA viruses. This family aligns several nepovirus coat protein sequences. In several cases, this is found at the C-terminus of the RNA2-encoded viral polyprotein. The coat protein consists of three trapezoid-shaped beta-barrel domains, and forms a pseudo T = 3 icosahedral capsid structure. : Pssm-ID: 397650 Cd Length: 163 Bit Score: 208.72 E-value: 2.89e-65
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Name | Accession | Description | Interval | E-value | ||||
Nepo_coat | pfam03391 | Nepovirus coat protein, central domain; The members of this family are derived from ... |
170-333 | 3.70e-69 | ||||
Nepovirus coat protein, central domain; The members of this family are derived from nepoviruses. Together with comoviruses and picornaviruses, nepoviruses are classified in the picornavirus superfamily of plus strand single-stranded RNA viruses. This family aligns several nepovirus coat protein sequences. In several cases, this is found at the C-terminus of the RNA2-encoded viral polyprotein. The coat protein consists of three trapezoid-shaped beta-barrel domains, and forms a pseudo T = 3 icosahedral capsid structure. Pssm-ID: 397456 Cd Length: 167 Bit Score: 219.17 E-value: 3.70e-69
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Nepo_coat_C | pfam03688 | Nepovirus coat protein, C-terminal domain; The members of this family are derived from ... |
339-501 | 2.89e-65 | ||||
Nepovirus coat protein, C-terminal domain; The members of this family are derived from nepoviruses. Together with comoviruses and picornaviruses, nepoviruses are classified in the picornavirus superfamily of plus strand single-stranded RNA viruses. This family aligns several nepovirus coat protein sequences. In several cases, this is found at the C-terminus of the RNA2-encoded viral polyprotein. The coat protein consists of three trapezoid-shaped beta-barrel domains, and forms a pseudo T = 3 icosahedral capsid structure. Pssm-ID: 397650 Cd Length: 163 Bit Score: 208.72 E-value: 2.89e-65
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Name | Accession | Description | Interval | E-value | ||||
Nepo_coat | pfam03391 | Nepovirus coat protein, central domain; The members of this family are derived from ... |
170-333 | 3.70e-69 | ||||
Nepovirus coat protein, central domain; The members of this family are derived from nepoviruses. Together with comoviruses and picornaviruses, nepoviruses are classified in the picornavirus superfamily of plus strand single-stranded RNA viruses. This family aligns several nepovirus coat protein sequences. In several cases, this is found at the C-terminus of the RNA2-encoded viral polyprotein. The coat protein consists of three trapezoid-shaped beta-barrel domains, and forms a pseudo T = 3 icosahedral capsid structure. Pssm-ID: 397456 Cd Length: 167 Bit Score: 219.17 E-value: 3.70e-69
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Nepo_coat_C | pfam03688 | Nepovirus coat protein, C-terminal domain; The members of this family are derived from ... |
339-501 | 2.89e-65 | ||||
Nepovirus coat protein, C-terminal domain; The members of this family are derived from nepoviruses. Together with comoviruses and picornaviruses, nepoviruses are classified in the picornavirus superfamily of plus strand single-stranded RNA viruses. This family aligns several nepovirus coat protein sequences. In several cases, this is found at the C-terminus of the RNA2-encoded viral polyprotein. The coat protein consists of three trapezoid-shaped beta-barrel domains, and forms a pseudo T = 3 icosahedral capsid structure. Pssm-ID: 397650 Cd Length: 163 Bit Score: 208.72 E-value: 2.89e-65
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Blast search parameters | ||||
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