NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|27436871|ref|NP_775100|]
View 

carboxypeptidase O precursor [Homo sapiens]

Protein Classification

M14 family carboxypeptidase O( domain architecture ID 10154703)

M14 family carboxypeptidase O (CPO) may have specificity for acidic residues rather than aliphatic/aromatic residues

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
M14_CPO cd06247
Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase O subgroup; Peptidase M14 ...
47-344 0e+00

Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase O subgroup; Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.


:

Pssm-ID: 349466 [Multi-domain]  Cd Length: 298  Bit Score: 622.64  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  47 YNIYHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNPKKIIWMDCGIHAREWIAPAFCQWFVKEIL 126
Cdd:cd06247   1 YTKYHPMDEIYQWMDQMQEKNSEVVSQHYLGQTYEKRPMYYLKIGWPSDKPKKIIWMDCGIHAREWIAPAFCQWFVKEIL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 127 QNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTFCG 206
Cdd:cd06247  81 QNYKTDSRLNKLLKNLDFYVLPVLNIDGYIYSWTTDRLWRKSRSPHNNGTCYGTDLNRNFNSQWCSIGASRNCCSIIFCG 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 207 TGPVSEPETKAVASFIESKKDDILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSADI 286
Cdd:cd06247 161 TGPESEPETKAVADLIEKKKSDILCYLTIHSYGQLILLPYGYTKEPSPNHEEMMEVGEKAAAALKEKHGTSYRVGSSADI 240
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 27436871 287 LYASSGSSRDWARDIGIPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEAVLSVLDDV 344
Cdd:cd06247 241 LYSNSGSSRDWARDIGIPFSYTFELRDTGTYGFVLPEDQIQPTCEETMEAVMSIIEYV 298
 
Name Accession Description Interval E-value
M14_CPO cd06247
Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase O subgroup; Peptidase M14 ...
47-344 0e+00

Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase O subgroup; Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.


Pssm-ID: 349466 [Multi-domain]  Cd Length: 298  Bit Score: 622.64  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  47 YNIYHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNPKKIIWMDCGIHAREWIAPAFCQWFVKEIL 126
Cdd:cd06247   1 YTKYHPMDEIYQWMDQMQEKNSEVVSQHYLGQTYEKRPMYYLKIGWPSDKPKKIIWMDCGIHAREWIAPAFCQWFVKEIL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 127 QNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTFCG 206
Cdd:cd06247  81 QNYKTDSRLNKLLKNLDFYVLPVLNIDGYIYSWTTDRLWRKSRSPHNNGTCYGTDLNRNFNSQWCSIGASRNCCSIIFCG 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 207 TGPVSEPETKAVASFIESKKDDILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSADI 286
Cdd:cd06247 161 TGPESEPETKAVADLIEKKKSDILCYLTIHSYGQLILLPYGYTKEPSPNHEEMMEVGEKAAAALKEKHGTSYRVGSSADI 240
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 27436871 287 LYASSGSSRDWARDIGIPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEAVLSVLDDV 344
Cdd:cd06247 241 LYSNSGSSRDWARDIGIPFSYTFELRDTGTYGFVLPEDQIQPTCEETMEAVMSIIEYV 298
Peptidase_M14 pfam00246
Zinc carboxypeptidase;
56-336 1.81e-119

Zinc carboxypeptidase;


Pssm-ID: 459730 [Multi-domain]  Cd Length: 287  Bit Score: 347.36  E-value: 1.81e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871    56 IYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSG---NPKKIIWMDCGIHAREWIAPAFCQWFVKEILQNHKDN 132
Cdd:pfam00246   1 IEAWLDALAARYPDLVRLVSIGKSVEGRPLKVLKISSGPGehnPGKPAVFIDGGIHAREWIGPATALYLIHQLLTNYGRD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871   133 SSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTFCGTGPVSE 212
Cdd:pfam00246  81 PEITELLDDTDIYILPVVNPDGYEYTHTTDRLWRKNRSNANGSSCIGVDLNRNFPDHWNEVGASSNPCSETYRGPAPFSE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871   213 PETKAVASFIESKKDDILcFLTMHSYGQLILTPYGYTK-NKSSNHPEMIQVGQKAANALKAK-YGTNYRVG-SSADILYA 289
Cdd:pfam00246 161 PETRAVADFIRSKKPFVL-YISLHSYSQVLLYPYGYTRdEPPPDDEELKSLARAAAKALQKMvRGTSYTYGiTNGATIYP 239
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 27436871   290 SSGSSRDWA-RDIGIPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEA 336
Cdd:pfam00246 240 ASGGSDDWAyGRLGIKYSYTIELRDTGRYGFLLPASQIIPTAEETWEA 287
Zn_pept smart00631
Zn_pept domain;
50-330 2.04e-118

Zn_pept domain;


Pssm-ID: 214748 [Multi-domain]  Cd Length: 277  Bit Score: 344.32  E-value: 2.04e-118
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871     50 YHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNPKKIIWMDCGIHAREWIAPAFCQWFVKEILQNH 129
Cdd:smart00631   1 YHSYEEIEAWLKELAARYPDLVRLVSIGKSVEGRPIWVLKISNGGSHDKPAIFIDAGIHAREWIGPATALYLINQLLENY 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871    130 KDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNgtCFGTDLNRNFNASWCSigaSRNCQDQTFCGTGP 209
Cdd:smart00631  81 GRDPRVTNLLDKTDIYIVPVLNPDGYEYTHTGDRLWRKNRSPNSN--CRGVDLNRNFPFHWGE---TGNPCSETYAGPSP 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871    210 VSEPETKAVASFIESKKdDILCFLTMHSYGQLILTPYGYTKNKS-SNHPEMIQVGQKAANALKAKYGTNYRVGSSADILY 288
Cdd:smart00631 156 FSEPETKAVRDFIRSNR-RFKLYIDLHSYSQLILYPYGYTKNDLpPNVDDLDAVAKALAKALASVHGTRYTYGISNGAIY 234
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 27436871    289 ASSGSSRDWARD-IGIPFSYTFELRDSGTYGFVLPEAQIQPTC 330
Cdd:smart00631 235 PASGGSDDWAYGvLGIPFSFTLELRDDGRYGFLLPPSQIIPTG 277
MpaA COG2866
Murein tripeptide amidase MpaA [Cell wall/membrane/envelope biogenesis];
43-309 2.53e-35

Murein tripeptide amidase MpaA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442113 [Multi-domain]  Cd Length: 337  Bit Score: 132.12  E-value: 2.53e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  43 ETYSYNIYHPMGEIYEWMREISEKYKEVVTQHfLGVTYETHPMYYLKISQPSGNPKKIiWMDCGIHAREWIAPAFCQWFV 122
Cdd:COG2866  12 EVSSYDRYYTYEELLALLAKLAAASPLVELES-IGKSVEGRPIYLLKIGDPAEGKPKV-LLNAQQHGNEWTGTEALLGLL 89
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 123 KEILQNhkDNSSIRKLLRNLDFYVLPVLNIDGYiytwttDRLWRksrsphNNGTcfGTDLNRNFNASWcsigasrncqdq 202
Cdd:COG2866  90 EDLLDN--YDPLIRALLDNVTLYIVPMLNPDGA------ERNTR------TNAN--GVDLNRDWPAPW------------ 141
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 203 tfcgtgpVSEPETKAVASFIESKKDDIlcFLTMHSYGQLILTPYGYT-KNKSSNHPEMIQVGQKAANALKAKYGTNYRVG 281
Cdd:COG2866 142 -------LSEPETRALRDLLDEHDPDF--VLDLHGQGELFYWFVGTTePTGSFLAPSYDEEREAFAEELNFEGIILAGSA 212
                       250       260
                ....*....|....*....|....*...
gi 27436871 282 SSADILYASSGSSRDWARDIGIPFSYTF 309
Cdd:COG2866 213 FLGAGAAGTLLISAPRQTFLFAAALDIG 240
PRK10602 PRK10602
murein tripeptide amidase MpaA;
179-226 1.16e-03

murein tripeptide amidase MpaA;


Pssm-ID: 182582  Cd Length: 237  Bit Score: 40.01  E-value: 1.16e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 27436871  179 GTDLNRNFNAS----------WCSIGASRNCQDQTfcGTGPVSEPETKAVASFIESKK 226
Cdd:PRK10602  94 GVDLNRNFPAAnwkegetvyrWNSAAEERDVVLLT--GDKPGSEPETQALCQLIHRLQ 149
 
Name Accession Description Interval E-value
M14_CPO cd06247
Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase O subgroup; Peptidase M14 ...
47-344 0e+00

Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase O subgroup; Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.


Pssm-ID: 349466 [Multi-domain]  Cd Length: 298  Bit Score: 622.64  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  47 YNIYHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNPKKIIWMDCGIHAREWIAPAFCQWFVKEIL 126
Cdd:cd06247   1 YTKYHPMDEIYQWMDQMQEKNSEVVSQHYLGQTYEKRPMYYLKIGWPSDKPKKIIWMDCGIHAREWIAPAFCQWFVKEIL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 127 QNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTFCG 206
Cdd:cd06247  81 QNYKTDSRLNKLLKNLDFYVLPVLNIDGYIYSWTTDRLWRKSRSPHNNGTCYGTDLNRNFNSQWCSIGASRNCCSIIFCG 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 207 TGPVSEPETKAVASFIESKKDDILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSADI 286
Cdd:cd06247 161 TGPESEPETKAVADLIEKKKSDILCYLTIHSYGQLILLPYGYTKEPSPNHEEMMEVGEKAAAALKEKHGTSYRVGSSADI 240
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 27436871 287 LYASSGSSRDWARDIGIPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEAVLSVLDDV 344
Cdd:cd06247 241 LYSNSGSSRDWARDIGIPFSYTFELRDTGTYGFVLPEDQIQPTCEETMEAVMSIIEYV 298
M14_CP_A-B_like cd03860
Peptidase M14 carboxypeptidase subfamily A/B-like; The Peptidase M14 Carboxypeptidase (CP) A/B ...
50-344 1.60e-147

Peptidase M14 carboxypeptidase subfamily A/B-like; The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the pancreas. The A forms have slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA3 is found in secretory granules of mast cells and functions in inflammatory processes. CPA4 is detected in hormone-regulated tissues, and is thought to play a role in prostate cancer. CPA5 is present in discrete regions of pituitary and other tissues, and cleaves aliphatic C-terminal residues. CPA6 is highly expressed in embryonic brain and optic muscle, suggesting that it may play a specific role in cell migration and axonal guidance. CPU (also called CPB2) is produced and secreted by the liver as the inactive precursor, PCPU, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). Little is known about CPO but it has been suggested to have specificity for acidic residues.


Pssm-ID: 349433 [Multi-domain]  Cd Length: 300  Bit Score: 418.85  E-value: 1.60e-147
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  50 YHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNP-KKIIWMDCGIHAREWIAPAFCQWFVKEILQN 128
Cdd:cd03860   1 YHPLDDIVQWLDDLAAAFPDNVEIFTIGKSYEGRDITGIHIWGSGGKGgKPAIVIHGGQHAREWISTSTVEYLAHQLLSG 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 129 HKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTFCGTG 208
Cdd:cd03860  81 YGSDATITALLDKFDFYIIPVVNPDGYVYTWTTDRLWRKNRQPTGGSSCVGIDLNRNWGYKWGGPGASTNPCSETYRGPS 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 209 PVSEPETKAVASFIESKKD--DILCFLTMHSYGQLILTPYGYTKNK-SSNHPEMIQVGQKAANALKAKYGTNYRVGSSAD 285
Cdd:cd03860 161 AFSAPETKALADFINALAAgqGIKGFIDLHSYSQLILYPYGYSCDAvPPDLENLMELALGAAKAIRAVHGTTYTVGPACS 240
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 286 ILYASSGSSRDWARDIG-IPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEAVLSVLDDV 344
Cdd:cd03860 241 TLYPASGSSLDWAYDVAkIKYSYTIELRDTGTYGFLLPPEQILPTGEETWAGVKYLADFI 300
M14_CPB cd03871
Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase B subgroup; Peptidase M14 ...
45-337 1.61e-140

Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase B subgroup; Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients. this subfamily also includes thrombin activatable fibrinolysis inhibitor (TAFIa), a carboxypeptidase that stabilizes fibrin clots by removing C-terminal arginines and lysines from partially degraded fibrin. Inhibition of TAFIa stimulates the degradation of fibrin clots and may help in prevention of thrombosis.


Pssm-ID: 349443 [Multi-domain]  Cd Length: 300  Bit Score: 401.45  E-value: 1.61e-140
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  45 YSYNIYHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNpKKIIWMDCGIHAREWIAPAFCQWFVKE 124
Cdd:cd03871   1 HSYEKYNNWETIEAWTEQVASKNPDLVSRSQIGTTFEGRPIYLLKVGKPGSN-KKAIFMDCGFHAREWISPAFCQWFVRE 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 125 ILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTF 204
Cdd:cd03871  80 AVRTYGKEKIMTKLLDRLDFYILPVLNIDGYVYTWTKNRMWRKTRSPNAGSSCIGTDPNRNFNAGWCTVGASSNPCSETY 159
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 205 CGTGPVSEPETKAVASFIESKKDDILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSA 284
Cdd:cd03871 160 CGSAPESEKETKALANFIRNNLSSIKAYLTIHSYSQMLLYPYSYTYKLAPNHEELNSIAKGAVKELSSLYGTKYTYGPGA 239
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|...
gi 27436871 285 DILYASSGSSRDWARDIGIPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEAV 337
Cdd:cd03871 240 TTIYPAAGGSDDWAYDQGIKYSFTFELRDKGRYGFLLPESQIKPTCEETMLAV 292
M14_CPB2 cd06246
Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase B2 subgroup; Peptidase M14 ...
47-337 6.39e-125

Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase B2 subgroup; Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity while low TAFI levels have been correlated with chronic liver disease.


Pssm-ID: 349465 [Multi-domain]  Cd Length: 300  Bit Score: 361.82  E-value: 6.39e-125
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  47 YNIYHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNPKKIIWMDCGIHAREWIAPAFCQWFVKEIL 126
Cdd:cd06246   2 YEQYHSLNEIYSWIEFITERHPDMLTKIHIGSSFEKYPLYVLKVSGKEQTAKNAIWIDCGIHAREWISPAFCLWFIGHAS 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 127 QNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTFCG 206
Cdd:cd06246  82 YFYGIIGQHTNLLNLVDFYVMPVVNVDGYDYSWKKNRMWRKNRSKHANNRCIGTDLNRNFDAGWCGKGASSDSCSETYCG 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 207 TGPVSEPETKAVASFIESKKDDILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSADI 286
Cdd:cd06246 162 PYPESEPEVKAVASFLRRHKDTIKAYISMHSYSQMVLFPYSYTRNKSKDHDELSLLAKEAVTAIRKTSRNRYTYGPGAET 241
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|.
gi 27436871 287 LYASSGSSRDWARDIGIPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEAV 337
Cdd:cd06246 242 IYLAPGGSDDWAYDLGIKYSFTFELRDRGTYGFLLPPSYIKPTCNEALLAV 292
Peptidase_M14 pfam00246
Zinc carboxypeptidase;
56-336 1.81e-119

Zinc carboxypeptidase;


Pssm-ID: 459730 [Multi-domain]  Cd Length: 287  Bit Score: 347.36  E-value: 1.81e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871    56 IYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSG---NPKKIIWMDCGIHAREWIAPAFCQWFVKEILQNHKDN 132
Cdd:pfam00246   1 IEAWLDALAARYPDLVRLVSIGKSVEGRPLKVLKISSGPGehnPGKPAVFIDGGIHAREWIGPATALYLIHQLLTNYGRD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871   133 SSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTFCGTGPVSE 212
Cdd:pfam00246  81 PEITELLDDTDIYILPVVNPDGYEYTHTTDRLWRKNRSNANGSSCIGVDLNRNFPDHWNEVGASSNPCSETYRGPAPFSE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871   213 PETKAVASFIESKKDDILcFLTMHSYGQLILTPYGYTK-NKSSNHPEMIQVGQKAANALKAK-YGTNYRVG-SSADILYA 289
Cdd:pfam00246 161 PETRAVADFIRSKKPFVL-YISLHSYSQVLLYPYGYTRdEPPPDDEELKSLARAAAKALQKMvRGTSYTYGiTNGATIYP 239
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 27436871   290 SSGSSRDWA-RDIGIPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEA 336
Cdd:pfam00246 240 ASGGSDDWAyGRLGIKYSYTIELRDTGRYGFLLPASQIIPTAEETWEA 287
Zn_pept smart00631
Zn_pept domain;
50-330 2.04e-118

Zn_pept domain;


Pssm-ID: 214748 [Multi-domain]  Cd Length: 277  Bit Score: 344.32  E-value: 2.04e-118
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871     50 YHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNPKKIIWMDCGIHAREWIAPAFCQWFVKEILQNH 129
Cdd:smart00631   1 YHSYEEIEAWLKELAARYPDLVRLVSIGKSVEGRPIWVLKISNGGSHDKPAIFIDAGIHAREWIGPATALYLINQLLENY 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871    130 KDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNgtCFGTDLNRNFNASWCSigaSRNCQDQTFCGTGP 209
Cdd:smart00631  81 GRDPRVTNLLDKTDIYIVPVLNPDGYEYTHTGDRLWRKNRSPNSN--CRGVDLNRNFPFHWGE---TGNPCSETYAGPSP 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871    210 VSEPETKAVASFIESKKdDILCFLTMHSYGQLILTPYGYTKNKS-SNHPEMIQVGQKAANALKAKYGTNYRVGSSADILY 288
Cdd:smart00631 156 FSEPETKAVRDFIRSNR-RFKLYIDLHSYSQLILYPYGYTKNDLpPNVDDLDAVAKALAKALASVHGTRYTYGISNGAIY 234
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 27436871    289 ASSGSSRDWARD-IGIPFSYTFELRDSGTYGFVLPEAQIQPTC 330
Cdd:smart00631 235 PASGGSDDWAYGvLGIPFSFTLELRDDGRYGFLLPPSQIIPTG 277
M14_CPA6 cd03872
Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase A6 subgroup; ...
49-340 9.51e-114

Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase A6 subgroup; Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expressed. It is also broadly expressed in embryonic tissue, being found in neuronal tissues, bone, skin as well as the lateral rectus eye muscle. A disruption in the CPA6 gene is linked to Duane syndrome, a defect in the abducens nerve/lateral rectus muscle connection.


Pssm-ID: 349444 [Multi-domain]  Cd Length: 300  Bit Score: 333.48  E-value: 9.51e-114
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  49 IYHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNPKKIIWMDCGIHAREWIAPAFCQWFVKEILQN 128
Cdd:cd03872   1 VYHSLEEIESWMFYMNKTHSDLVHMFSIGKSYEGRSLYVLKLGKRSRSYKKAVWIDCGIHAREWIGPAFCQWFVKEAINS 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 129 HKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTFCGTG 208
Cdd:cd03872  81 YQTDPAMKKMLNQLYFYVMPVFNVDGYHYSWTNDRFWRKTRSKNSRFQCRGVDANRNWKVKWCDEGASLHPCDDTYCGPF 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 209 PVSEPETKAVASFIESKKDDILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSADILY 288
Cdd:cd03872 161 PESEPEVKAVAQFLRKHRKHVRAYLSFHAYAQMLLYPYSYKYATIPNFGCVESAAHNAVNALQSAYGVRYRYGPASSTLY 240
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|..
gi 27436871 289 ASSGSSRDWARDIGIPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEAVLSV 340
Cdd:cd03872 241 VSSGSSMDWAYKNGIPYAFAFELRDTGYFGFLLPEGLIKPTCTETMLAVKNI 292
M14_CPA cd03870
Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase A subgroup; Peptidase M14 ...
45-344 6.67e-102

Peptidase M14 carboxypeptidase subfamily A/B-like; Carboxypeptidase A subgroup; Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA4, detected in hormone-regulated tissues, is thought to play a role in prostate cancer.


Pssm-ID: 349442 [Multi-domain]  Cd Length: 301  Bit Score: 303.20  E-value: 6.67e-102
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  45 YSYNIYHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNpKKIIWMDCGIHAREWIAPAFCQWFVKE 124
Cdd:cd03870   1 FNYAAYHTLEEIYFWMDNLVAEHPNLVSKLQIGSSFENRPMYVLKFSTGGEE-RPAIWIDAGIHSREWVTQASAIWTAEK 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 125 ILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTF 204
Cdd:cd03870  80 IVSDYGKDPSITSILDTMDIFLEIVTNPDGYVFTHSSNRLWRKTRSVNPGSLCIGVDPNRNWDAGFGGPGASSNPCSETY 159
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 205 CGTGPVSEPETKAVASFIESKKDdILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSA 284
Cdd:cd03870 160 HGPHANSEVEVKSIVDFIQSHGN-FKAFISIHSYSQLLMYPYGYTVEKAPDQEELDEVAKKAVKALASLHGTEYKVGSIS 238
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 285 DILYASSGSSRDWARDIGIPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEAVLSVLDDV 344
Cdd:cd03870 239 TTIYQASGSSIDWAYDNGIKYAFTFELRDTGRYGFLLPANQIIPTAEETWLALKTIMEHV 298
M14_CP_insect cd06248
Peptidase M14 carboxypeptidase subfamily A/B-like; This family includes peptidase M14 ...
50-341 8.87e-82

Peptidase M14 carboxypeptidase subfamily A/B-like; This family includes peptidase M14 carboxypeptidases found specifically in insects, including B-type carboxypeptidase of H. zea (CPBHz, insect gut carboxypeptidase-3) that is insensitive to potato carboxypeptidase inhibitor (PCI) in corn earworm, and midgut procarboxypeptidase A (PCPAHa, insect gut carboxypeptidase-1) from Helicoverpa armigera larva, a devastating pest of crops. PCPAHa preferentially cleaves aliphatic and aromatic residues. The peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the pancreas. The A forms have slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA3 is found in secretory granules of mast cells and functions in inflammatory processes. CPA4 is detected in hormone-regulated tissues, and is thought to play a role in prostate cancer. CPA5 is present in discrete regions of pituitary and other tissues, and cleaves aliphatic C-terminal residues. CPA6 is highly expressed in embryonic brain and optic muscle, suggesting that it may play a specific role in cell migration and axonal guidance. CPU (also called CPB2) is produced and secreted by the liver as the inactive precursor, PCPU, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). Little is known about CPO but it has been suggested to have specificity for acidic residues.


Pssm-ID: 349467 [Multi-domain]  Cd Length: 297  Bit Score: 251.61  E-value: 8.87e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  50 YHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPS--GNPKKIIWMDCGIHAREWIAPAFCQWFVKEILQ 127
Cdd:cd06248   1 YHSLDEIDEYLDGLAEESPDVVTVVEGGYTFEGRPIKYVRIRSTNseDTSKPTIMIEGGINPREWISPPAALYAIHKLVE 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 128 nhkDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNGT---CFGTDLNRNFNASWCSIGASRNCQDQTF 204
Cdd:cd06248  81 ---DVETQSDLLNNFDWIILPVANPDGYVFTHTNDREWTKNRSTNSNPLgqiCFGVNINRNFDYQWNPVLSSESPCSELY 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 205 CGTGPVSEPETKAVASFIESKKDDILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSA 284
Cdd:cd06248 158 AGPSAFSEAESRAIRDILHEHGNRIHLYISFHSGGSFILYPWGYDGSTSSNARQLHLAGVAAAAAISSNNGRPYVVGQSS 237
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 27436871 285 DILYASSGSSRDWARDIGiPFSYTFELRD-SGTYGFVLPEAQIQPTCEETMEAVLSVL 341
Cdd:cd06248 238 VLLYRAAGTSSDYAMGIA-GIDYTYELPGySSGDPFYVPPAYIEQVVREAWEGIVVGA 294
M14_CPT cd03859
Peptidase M14 Carboxypeptidase T subfamily; Peptidase M14-like domain of carboxypeptidase (CP) ...
50-337 1.21e-73

Peptidase M14 Carboxypeptidase T subfamily; Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.


Pssm-ID: 349432 [Multi-domain]  Cd Length: 292  Bit Score: 230.61  E-value: 1.21e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  50 YHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNPKKI--IWMDCGIHAREWIAPAFCQWFVKEILQ 127
Cdd:cd03859   4 YHTYAELVAELDQLAAEYPEITKLISIGKSVEGRPIWAVKISDNPDEDEDEpeVLFMGLHHAREWISLEVALYFADYLLE 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 128 NHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTD--RLWRKSRSPHNN--GTCFGTDLNRNFNASW--CSIGASRNCQD 201
Cdd:cd03859  84 NYGTDPRITNLVDNREIWIIPVVNPDGYEYNRETGggRLWRKNRRPNNGnnPGSDGVDLNRNYGYHWggDNGGSSPDPSS 163
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 202 QTFCGTGPVSEPETKAVASFIESKkdDILCFLTMHSYGQLILTPYGYTKNKSS-NHPEMIQVGQKaanalKAKYGTNYRV 280
Cdd:cd03859 164 ETYRGPAPFSEPETQAIRDLVESH--DFKVAISYHSYGELVLYPWGYTSDAPTpDEDVFEELAEE-----MASYNGGGYT 236
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 27436871 281 GSSADILYASSGSSRDWA-RDIGIpFSYTFELRDsGTYGFVLPEAQIQPTCEETMEAV 337
Cdd:cd03859 237 PQQSSDLYPTNGDTDDWMyGEKGI-IAFTPELGP-EFYPFYPPPSQIDPLAEENLPAA 292
Peptidase_M14_like cd00596
M14 family of metallocarboxypeptidases and related proteins; The M14 family of ...
101-337 1.73e-44

M14 family of metallocarboxypeptidases and related proteins; The M14 family of metallocarboxypeptidases (MCPs), also known as funnelins, are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavage. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.


Pssm-ID: 349427 [Multi-domain]  Cd Length: 216  Bit Score: 152.61  E-value: 1.73e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 101 IWMDCGIHAREWIAPAFCQWFVKEILQNHKDNsSIRKLLRNLDFYVLPVLNIDGYIYTWttDRLWRKSRsphnngtcFGT 180
Cdd:cd00596   1 ILITGGIHGNEVIGVELALALIEYLLENYGND-PLKRLLDNVELWIVPLVNPDGFARVI--DSGGRKNA--------NGV 69
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 181 DLNRNFNASWcSIGASRNCQDQTFCGTGPVSEPETKAVASFIESKKDDIlcFLTMHSYGQLILTPYGYTKNKSSNHPEMI 260
Cdd:cd00596  70 DLNRNFPYNW-GKDGTSGPSSPTYRGPAPFSEPETQALRDLAKSHRFDL--AVSYHSSSEAILYPYGYTNEPPPDFSEFQ 146
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27436871 261 QVGQKAANALKAkygtNYRVGSSADILYASSGSSRDWARDIGIPFSYTFELrdsGTYGFVLPEAQIQPTCEETMEAV 337
Cdd:cd00596 147 ELAAGLARALGA----GEYGYGYSYTWYSTTGTADDWLYGELGILAFTVEL---GTADYPLPGTLLDRRLERNLAAL 216
M14-like cd06228
Peptidase M14-like domain; uncharacterized subfamily; A functionally uncharacterized subgroup ...
106-346 4.89e-44

Peptidase M14-like domain; uncharacterized subfamily; A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.


Pssm-ID: 349447  Cd Length: 294  Bit Score: 154.08  E-value: 4.89e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 106 GIHAREWIAPAFCQWFVKEILQNHKDNS------------SIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPH- 172
Cdd:cd06228   8 GVHAREWGSPDILIYFAADLLEAYTNNTgltyggktftaaQVKSILENVDLVVFPLVNPDGRWYSQTSESMWRKNRNPAs 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 173 --NNGTCFGTDLNRNFNASW--------CSIGASRNCQDQTFCGTGPVSEPETKAVASFIESKKdDILCFLTMHSYGQLI 242
Cdd:cd06228  88 agDGGSCIGVDINRNFDFLWdfpryfdpGRVPASTSPCSETYHGPSAFSEPETRNVVWLFDAYP-NIRWFVDVHSASELI 166
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 243 LTPYGYTKNKsSNHPEM-------------------------------IQVGQKAANALKAKYGTNYRVGSSADiLYASS 291
Cdd:cd06228 167 LYSWGDDENQ-STDPAMnflnpaydgkrgiagdtryrefipsddrtiaVNLANRMALAIAAVRGRVYTVQQAFG-LYPTS 244
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 27436871 292 GSSRDWArdigipFSYTFELRDSG-TYGFVLPEAQ-IQPTCEEtMEavlSVLDDVYA 346
Cdd:cd06228 245 GASDDYA------YSRHFVNPAKRkVYGFTIEWGTeFQPAYSE-ME---NIIRDVSA 291
M14-CPA-like cd06227
Peptidase M14 carboxypeptidase A-like domain; uncharacterized subfamily; A functionally ...
105-311 3.42e-37

Peptidase M14 carboxypeptidase A-like domain; uncharacterized subfamily; A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.


Pssm-ID: 349446 [Multi-domain]  Cd Length: 224  Bit Score: 133.94  E-value: 3.42e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 105 CGIHAREWIAPAFCQWFVKEILQNHKD------NSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKsrsphnNGTcf 178
Cdd:cd06227   8 FGEHARELISVESALRLLRQLCGGLQEpaasalRELAREILDNVELKIIPNANPDGRRLVESGDYCWRG------NEN-- 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 179 GTDLNRNFNASWCSIGASRncQDQTFCGTGPVSEPETKAVASFIESKKDDIlcFLTMHSYGQLILTPYGYTKNKS-SNHP 257
Cdd:cd06227  80 GVDLNRNWGVDWGKGEKGA--PSEEYPGPKPFSEPETRALRDLALSFKPHA--FVSVHSGMLAIYTPYAYSASVPrPNRA 155
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 27436871 258 EMIQVgqkAANALKAKYGTNYRVGSSADIL-YASSGSSRDWARD-IGIPFSYTFEL 311
Cdd:cd06227 156 ADMDD---LLDVVAKASCGDCTVGSAGKLVgYLADGTAMDYMYGkLKVPYSFTFEI 208
M14_CPT_like cd06226
Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase T (CPT) ...
85-311 4.57e-36

Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase T (CPT)-like proteins; Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.


Pssm-ID: 349445 [Multi-domain]  Cd Length: 267  Bit Score: 132.19  E-value: 4.57e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  85 MYYLKISQPS---GNPKKIIWMDCGIHAREWIAPAFCQWFVKEILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTwTT 161
Cdd:cd06226   2 IRALKLTNKQatpPGEKPKFFMMAAIHAREYTTAELVARFAEDLVAGYGTDADATWLLDYTELHLVPQVNPDGRKIA-ET 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 162 DRLWRKSRSPHNNGTCF---GTDLNRNFNASWCSIGASRNCQDQTFCGTGPVSEPETKAVASFIES-------------K 225
Cdd:cd06226  81 GLLWRKNTNTTPCPASSptyGVDLNRNSSFKWGGAGAGGSACSETYRGPSAASEPETQAIENYVKQlfpdqrgpgltdpA 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 226 KDDIL-CFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAAnalkakYGTNYrVGSSADILYASSGSSRDWAR-DIGI 303
Cdd:cd06226 161 PDDTSgIYIDIHSYGNLVLYPWGWTGTPAPNAAGLRTLGRKFA------YFNGY-TPQQAVALYPTDGTTDDFAYgTLGV 233

                ....*...
gi 27436871 304 PfSYTFEL 311
Cdd:cd06226 234 A-AYTFEL 240
MpaA COG2866
Murein tripeptide amidase MpaA [Cell wall/membrane/envelope biogenesis];
43-309 2.53e-35

Murein tripeptide amidase MpaA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442113 [Multi-domain]  Cd Length: 337  Bit Score: 132.12  E-value: 2.53e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  43 ETYSYNIYHPMGEIYEWMREISEKYKEVVTQHfLGVTYETHPMYYLKISQPSGNPKKIiWMDCGIHAREWIAPAFCQWFV 122
Cdd:COG2866  12 EVSSYDRYYTYEELLALLAKLAAASPLVELES-IGKSVEGRPIYLLKIGDPAEGKPKV-LLNAQQHGNEWTGTEALLGLL 89
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 123 KEILQNhkDNSSIRKLLRNLDFYVLPVLNIDGYiytwttDRLWRksrsphNNGTcfGTDLNRNFNASWcsigasrncqdq 202
Cdd:COG2866  90 EDLLDN--YDPLIRALLDNVTLYIVPMLNPDGA------ERNTR------TNAN--GVDLNRDWPAPW------------ 141
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 203 tfcgtgpVSEPETKAVASFIESKKDDIlcFLTMHSYGQLILTPYGYT-KNKSSNHPEMIQVGQKAANALKAKYGTNYRVG 281
Cdd:COG2866 142 -------LSEPETRALRDLLDEHDPDF--VLDLHGQGELFYWFVGTTePTGSFLAPSYDEEREAFAEELNFEGIILAGSA 212
                       250       260
                ....*....|....*....|....*...
gi 27436871 282 SSADILYASSGSSRDWARDIGIPFSYTF 309
Cdd:COG2866 213 FLGAGAAGTLLISAPRQTFLFAAALDIG 240
M14-like cd06905
Peptidase M14-like domain; uncharacterized subfamily; A functionally uncharacterized subgroup ...
45-311 7.42e-28

Peptidase M14-like domain; uncharacterized subfamily; A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.


Pssm-ID: 349476 [Multi-domain]  Cd Length: 359  Bit Score: 112.33  E-value: 7.42e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  45 YSYNIYHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNP---KKIIWMDCGIHAREWIAPAFCQWF 121
Cdd:cd06905   1 LAFDRYYTYAELTARLKALAEAYPNLVRLESIGKSYEGRDIWLLTITNGETGPadeKPALWVDGNIHGNEVTGSEVALYL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 122 VKEILQNHKDNSSIRKLLRNLDFYVLPVLNIDGY-IYTWTTDRL------------------------------------ 164
Cdd:cd06905  81 AEYLLTNYGKDPEITRLLDTRTFYILPRLNPDGAeAYKLKTERSgrssprdddrdgdgdedgpedlngdglitqmrvkdp 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 165 ---WRKS---------RSPHNNGT--------------------CFGTDLNRNFNASWcsigasRNCQDQTFCGTGPVSE 212
Cdd:cd06905 161 tgtWKVDpddprlmvdREKGEKGFyrlypegidndgdgrynedgPGGVDLNRNFPYNW------QPFYVQPGAGPYPLSE 234
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 213 PETKAVASFIESKKdDILCFLTMHSYGQLILTPYGyTKNKSSNHPEMIQVGQKAANalKAKYGTNYRVGSSADILYA--- 289
Cdd:cd06905 235 PETRAVADFLLAHP-NIAAVLTFHTSGGMILRPPG-TGPDSDMPPADRRVYDAIGK--KGVELTGYPVSSVYKDFYTvpg 310
                       330       340
                ....*....|....*....|....*
gi 27436871 290 --SSGSSRDWARD-IGIPfSYTFEL 311
Cdd:cd06905 311 gpLDGDFFDWAYFhLGIP-SFSTEL 334
M14_Endopeptidase_I cd06229
Peptidase M14 carboxypeptidase family-like domain of Endopeptidase I; Peptidase M14-like ...
106-325 4.64e-23

Peptidase M14 carboxypeptidase family-like domain of Endopeptidase I; Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs), and is classified as belonging to subfamily C. However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1 has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide. ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.


Pssm-ID: 349448 [Multi-domain]  Cd Length: 238  Bit Score: 96.25  E-value: 4.64e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 106 GIHAREWIAPAFCQWFVKEILQNHKDNS-----SIRKLLRNLDFYVLPVLNIDGY---IYTWTTDRLWRKSRSPHN-NGT 176
Cdd:cd06229   6 SFHAREYITTLLLMKFIEDYAKAYVNKSyirgkDVGELLNKVTLHIVPMVNPDGVeisQNGSNAINPYYLRLVAWNkKGT 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 177 CF--------GTDLNRNFNASWcSIGASRNCQDQT---FCGTGPVSEPETKAVASFIESKkdDILCFLTMHSYGQLIltp 245
Cdd:cd06229  86 DFtgwkanirGVDLNRNFPAGW-EKEKRLGPKAPGprdYPGKEPLSEPETKAMAALTRQN--DFDLVLAYHSQGEEI--- 159
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 246 YGYTKNKSSnhpemiQVGQKAANALKAKygTNYRVGSSADIlyASSGSSRDW-ARDIGIPfSYTFELrdsGTYGFVLPEA 324
Cdd:cd06229 160 YWGYNGLEP------EESKAMAEKFASV--SGYEPVEAEAI--DSYGGFKDWfIYEFKKP-SFTIET---GKGNNPLPIS 225

                .
gi 27436871 325 Q 325
Cdd:cd06229 226 Q 226
M14_CP_N-E_like cd03858
Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase (CP) N/E-like subfamily of ...
50-225 1.46e-11

Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages that would otherwise damage the cell. In addition, all members of the N/E subfamily contain an extra C-terminal domain that is not present in the A/B subfamily. This domain has structural homology to transthyretin and other proteins and has been proposed to function as a folding domain. The active N/E enzymes fulfill a variety of cellular functions, including prohormone processing, regulation of peptide hormone activity, alteration of protein-protein or protein-cell interactions and transcriptional regulation.


Pssm-ID: 349431 [Multi-domain]  Cd Length: 292  Bit Score: 64.60  E-value: 1.46e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  50 YHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGN-----PK-KIIwmdCGIHAREWIAPAFCQWFVK 123
Cdd:cd03858   1 HHNYEELEEFLKQVAKRYPNITRLYSIGKSVEGRELWVLEISDNPGVhepgePEfKYV---ANMHGNEVVGRELLLLLAE 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 124 EILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNgtcfgTDLNRNFNAswcsigasrncQDQT 203
Cdd:cd03858  78 YLCENYGKDPRVTQLVNSTRIHIMPSMNPDGYEKAQEGDCGGLIGRNNANG-----VDLNRNFPD-----------QFFQ 141
                       170       180
                ....*....|....*....|..
gi 27436871 204 FCGTGPVSEPETKAVASFIESK 225
Cdd:cd03858 142 VYSDNNPRQPETKAVMNWLESI 163
M14_MpaA-like cd06904
Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A and related proteins; ...
93-237 1.09e-09

Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A and related proteins; Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.


Pssm-ID: 349475 [Multi-domain]  Cd Length: 214  Bit Score: 57.67  E-value: 1.09e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  93 PSGNPKKIIWMdCGIHAREWIAPAFCQWFVKEILQNHkdnssirkLLRNLDFYVLPVLNIDGYIytwttdrlwRKSRspH 172
Cdd:cd06904  19 GPGSRARILII-GGIHGDEPEGVSLVEHLLRWLKNHP--------ASGDFHIVVVPCLNPDGLA---------AGTR--T 78
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27436871 173 N-NGTcfgtDLNRNFNAS-WCSIGASRNCQDQtFCGTGPVSEPETKAVASFIESKKDDilCFLTMHS 237
Cdd:cd06904  79 NaNGV----DLNRNFPTKnWEPDARKPKDPRY-YPGPKPASEPETRALVELIERFKPD--RIISLHA 138
M14_Nna1-like cd06237
Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; ...
56-237 8.79e-09

Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; uncharacterized bacterial subgroup; A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349456 [Multi-domain]  Cd Length: 239  Bit Score: 55.65  E-value: 8.79e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  56 IYEWMREISEKYKevVTQHFLGVTYETHPMYYLKISQPSgNPKKIIWMdcgihAR----EwIAPAFC-QWFVKEILQnhk 130
Cdd:cd06237   3 YDAWIDSLAKKPF--VKRSTIGKSVEGRPIEALTIGNPD-SKELVVLL-----GRqhppE-VTGALAmQAFVETLLA--- 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 131 DNSSIRKLLRNLDFYVLPVLNIDGyiytwtTDR-LWRksrspHNNGtcfGTDLNRNfnasWcsigasrncqdqtfcgtGP 209
Cdd:cd06237  71 DTELAKAFRARFRVLVVPLLNPDG------VDLgHWR-----HNAG---GVDLNRD----W-----------------GP 115
                       170       180       190
                ....*....|....*....|....*....|..
gi 27436871 210 VSEPETKAVASFIESKKDD----ILCFLTMHS 237
Cdd:cd06237 116 FTQPETRAVRDFLLELVEEpggkVVFGLDFHS 147
M14_CPD_I cd03868
Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain I subgroup; The ...
50-258 2.60e-08

Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain I subgroup; The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at pH 6.3-7.5 and prefers substrates with C-terminal Arg, whereas domain II is active at pH 5.0-6.5 and prefers substrates with C-terminal Lys. This Domain I family contains two contiguous surface cysteines that may become palmitoylated and target the enzyme to membranes, thus regulating intracellular trafficking. CPD functions in the processing of proteins that transit the secretory pathway, and is present in all vertebrates as well as Drosophila. It is broadly distributed in all tissue types. Within cells, CPD is present in the trans Golgi network and immature secretory vesicles, but is excluded from mature vesicles. It is thought to play a role in the processing of proteins that are initially processed by furin or related endopeptidases present in the trans Golgi network, such as growth factors and receptors. CPD is implicated in the pathogenesis of lupus erythematosus (LE), it is regulated by TGF-beta in various cell types of murine and human origin and is significantly down-regulated in CD14 positive cells isolated from patients with LE. As down-regulation of CPD leads to down-modulation of TGF-beta, CPD may have a role in a positive feedback loop. In D. melanogaster, the CPD variant 1B short (DmCPD1Bs) is necessary and sufficient for viability of the fruit fly.


Pssm-ID: 349440  Cd Length: 294  Bit Score: 54.56  E-value: 2.60e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  50 YHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKIS-----QPSGNPK-KIIwmdCGIHAREWIAPAFCQWFVK 123
Cdd:cd03868   1 YHNYDELTDLLHKLAETYPNIAKLHSIGKSVQGRELWVLEISdnvnrREPGKPMfKYV---ANMHGDETVGRQLLIYLAQ 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 124 EILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYiytwttdrlwRKSRSphnnGTCFGT------------DLNRNFnaswc 191
Cdd:cd03868  78 YLLENYGKDERVTRLVNSTDIHLMPSMNPDGF----------ENSKE----GDCSGDpgyggrenannvDLNRNF----- 138
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27436871 192 sigasrncQDQtFCGTGPVS----EPETKAVASFIESKKddilcF-LTMHSYGQLILTPYGYtkNKSSNHPE 258
Cdd:cd03868 139 --------PDQ-FEDSDDRLlegrQPETLAMMKWIVENP-----FvLSANLHGGSVVASYPF--DDSPSHIE 194
M14_CPD_III cd06245
Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain III subgroup; ...
50-309 2.07e-07

Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain III subgroup; The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at pH 6.3-7.5 and prefers substrates with C-terminal Arg, whereas domain II is active at pH 5.0-6.5 and prefers substrates with C-terminal Lys. CPD functions in the processing of proteins that transit the secretory pathway, and is present in all vertebrates as well as Drosophila. It is broadly distributed in all tissue types. Within cells, CPD is present in the trans-Golgi network and immature secretory vesicles, but is excluded from mature vesicles. It is thought to play a role in the processing of proteins that are initially processed by furin or related endopeptidases present in the trans-Golgi network, such as growth factors and receptors. CPD is implicated in the pathogenesis of lupus erythematosus (LE), it is regulated by TGF-beta in various cell types of murine and human origin and is significantly down-regulated in CD14 positive cells isolated from patients with LE. As down -regulation of CPD leads to down-modulation of TGF-beta, CPD may have a role in a positive feedback loop.


Pssm-ID: 349464 [Multi-domain]  Cd Length: 283  Bit Score: 51.68  E-value: 2.07e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  50 YHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKIS---QPSGNPKKIIWMDCGIHAREWIAPAFCQWFVKEIL 126
Cdd:cd06245   1 YHSYKQLSKFLRGLNSNYPTITNLTSLGQSVEKRDIWVLEIGnkpNESEPSEPKILFVGGIHGNAPVGTELLLLLAHFLC 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 127 QNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDrlwRKSRSPHNNGTcfGTDLNRNF--NASWCSIGAsrncqdqtf 204
Cdd:cd06245  81 HNYKKDSAITKLLNRTRIHIVPSLNPDGAEKAEEKK---CTSKIGEKNAN--GVDLDTDFesNANNRSGAA--------- 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 205 cgtgpvsEPETKAVASFIesKKDDILcfLTMHSYGQLILTPYGY------TKNK----------SSNHPEMIQVGQKAAN 268
Cdd:cd06245 147 -------QPETKAIMDWL--KEKDFT--LSVALDGGSLVVTYPYdkpvqtVENKetlkhlakvyANNHPTMHAGDPGCCS 215
                       250       260       270       280
                ....*....|....*....|....*....|....*....|.
gi 27436871 269 ALKAKYGTNYRVGSSadiLYASSGSSRDwardigipFSYTF 309
Cdd:cd06245 216 NSDENFTNGVIRASE---WHSHKGSMLD--------FSYKF 245
M14_PaCCP-like cd06234
Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases similar ...
76-154 7.28e-07

Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases similar to Pseudomonas aerugnosa CCP (PaCCP); A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. This subgroup includes PaCCP from Pseudomonas aeruginosa, a carboxypeptidase homologous to M14D subfamily of human CCPs. Structural complexes with well-known inhibitors of metallocarboxypeptidases indicate that PaCCP might only possess C-terminal hydrolase activity against cellular substrates of particular specificity. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349453 [Multi-domain]  Cd Length: 256  Bit Score: 49.87  E-value: 7.28e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  76 LGVTYETHPMYYLKISQPSGNPKKIiWmdcgIHAR----EWIAPAFCQWFVKEILQNhkDNSSIRKLLRNLDFYVLPVLN 151
Cdd:cd06234  24 LGQTLDGRDIDLLTIGDPGTGKKKV-W----IIARqhpgETMAEWFMEGLLDRLLDE--DDPVSRALLEKAVFYVVPNMN 96

                ...
gi 27436871 152 IDG 154
Cdd:cd06234  97 PDG 99
M14_CP_bacteria cd18173
bacterial peptidase M14 carboxypeptidase, uncharacterized; This family contains only bacterial ...
50-224 7.72e-07

bacterial peptidase M14 carboxypeptidase, uncharacterized; This family contains only bacterial carboxypeptidase (CP) members of the M14 family of metallocarboxypeptidases (MCPs), mostly of which have yet to be characterized. The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages that would otherwise damage the cell. In addition, all members of the N/E subfamily contain an extra C-terminal domain that is not present in the A/B subfamily. This domain has structural homology to transthyretin and other proteins and has been proposed to function as a folding domain. The active N/E enzymes fulfill a variety of cellular functions, including prohormone processing, regulation of peptide hormone activity, alteration of protein-protein or protein-cell interactions and transcriptional regulation.


Pssm-ID: 349483 [Multi-domain]  Cd Length: 281  Bit Score: 49.88  E-value: 7.72e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  50 YHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISqpsGNPK--------KIIwmdCGIHAREWIAPAFCQWF 121
Cdd:cd18173   4 YPTYEEYEAMMQSFAANYPNICRLVSIGTSVQGRKLLALKIS---DNVNteeaepefKYT---STMHGDETTGYELMLRL 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 122 VKEILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYiYTWTTDRLWRKSRSPHNngtcfGTDLNRNFnaswcsigasrncQD 201
Cdd:cd18173  78 IDYLLTNYGTDPRITNLVDNTEIWINPLANPDGT-YAGGNNTVSGATRYNAN-----GVDLNRNF-------------PD 138
                       170       180
                ....*....|....*....|....*
gi 27436871 202 QTFCG--TGPVSEPETKAVASFIES 224
Cdd:cd18173 139 PVDGDhpDGNGWQPETQAMMNFADE 163
M14_CPD_II cd03863
Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain II subgroup; The ...
50-224 1.73e-06

Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain II subgroup; The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at pH 6.3-7.5 and prefers substrates with C-terminal Arg, whereas domain II is active at pH 5.0-6.5 and prefers substrates with C-terminal Lys. CPD functions in the processing of proteins that transit the secretory pathway, and is present in all vertebrates as well as Drosophila. It is broadly distributed in all tissue types. Within cells, CPD is present in the trans-Golgi network and immature secretory vesicles, but is excluded from mature vesicles. It is thought to play a role in the processing of proteins that are initially processed by furin or related endopeptidases present in the trans-Golgi network, such as growth factors and receptors. CPD is implicated in the pathogenesis of lupus erythematosus (LE), it is regulated by TGF-beta in various cell types of murine and human origin and is significantly down-regulated in CD14 positive cells isolated from patients with LE. As down -regulation of CPD leads to down-modulation of TGF-beta, CPD may have a role in a positive feedback loop.


Pssm-ID: 349435 [Multi-domain]  Cd Length: 296  Bit Score: 49.17  E-value: 1.73e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  50 YHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGN-----PK-KIIWmdcGIHAREWIAPAFCQWFVK 123
Cdd:cd03863   8 HHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGVhepgePEfKYIG---NMHGNEVVGRELLLNLIE 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 124 EILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNNgtcfgTDLNRNFnaswcsigasrncQDQT 203
Cdd:cd03863  85 YLCKNFGTDPEVTDLVQNTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNN-----YDLNRNF-------------PDQF 146
                       170       180
                ....*....|....*....|.
gi 27436871 204 FCGTGPVsEPETKAVASFIES 224
Cdd:cd03863 147 FQITDPP-QPETLAVMSWLKT 166
M14-like cd03857
Peptidase M14-like domain; uncharacterized subfamily; Peptidase M14-like domain of a ...
100-317 2.04e-05

Peptidase M14-like domain; uncharacterized subfamily; Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavage. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.


Pssm-ID: 349430 [Multi-domain]  Cd Length: 203  Bit Score: 45.14  E-value: 2.04e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 100 IIWMDCGIHARE-WIAPAFCQWfVKEILQnhkDNSSIRKLLRNLDFYVLPVLNIDG----YIYTWTTDRLWRKSRSPHNn 174
Cdd:cd03857   1 TVLLAAQIHGNEtTGTEALMEL-IRDLAS---ESDEAAKLLDNIVILLVPQLNPDGaelfVNFYLDSMNGLPGTRYNAN- 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 175 gtcfGTDLNRNFnaswcsigasrncQDQTfcgtgpvsEPETKAVASFIESKKDDIlcFLTMHSY---GQLILTPY---GY 248
Cdd:cd03857  76 ----GIDLNRDH-------------VKLT--------QPETQAVAENFIHWWPDI--FIDLHEQvgaSIPYPTPPdapNY 128
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 249 TKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSADILYASSGSSRDWARDI-GIPfSYTFELRDSGTY 317
Cdd:cd03857 129 NLVDLRSDAENGQEHIRLIAGEGSGELGKYFSPMRGGFDDSTGGNGIGRTSGFhGAI-SILFEVPGQPNY 197
M14-like cd06242
Peptidase M14-like domain; uncharacterized subgroup; Peptidase M14-like domain of a ...
98-219 4.69e-04

Peptidase M14-like domain; uncharacterized subgroup; Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.


Pssm-ID: 349461 [Multi-domain]  Cd Length: 220  Bit Score: 41.13  E-value: 4.69e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  98 KKIIWMDCGIHAREWIAPAFCQWFVKEILqnhkDNSSIRKLLRNLDFYVLPVLNIDGYiytwttDRLWRksrsphnnGTC 177
Cdd:cd06242   1 KPTVLLVGQQHGNEPAGREAALALARDLA----FGDDARELLEKVNVLVVPRANPDGR------AANTR--------GNA 62
                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 27436871 178 FGTDLNRnfnaswcsigasrncqDQTfcgtgPVSEPETKAVA 219
Cdd:cd06242  63 NGVDLNR----------------DHL-----LLSTPETRALA 83
M14_CPM cd03866
Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase M subgroup; Peptidase M14 ...
50-225 5.75e-04

Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase M subgroup; Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the control of peptide hormones and growth factor activity on the cell surface and in the membrane-localized degradation of extracellular proteins, for example it hydrolyses the C-terminal arginine of epidermal growth factor (EGF) resulting in des-Arg-EGF which binds to the EGF receptor (EGFR) with an equal or greater affinity than native EGF. CPM is a required processing enzyme that generates specific agonists for the B1 receptor.


Pssm-ID: 349438  Cd Length: 289  Bit Score: 41.32  E-value: 5.75e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871  50 YHPMGEIYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQpsgNPKK----IIWMD--CGIHAREWIAPAFCQWFVK 123
Cdd:cd03866   1 YHNQEQMETYLKDVNKNYPSITHLHSIGKSVEGRDLWVLVLGR---FPTKhrigIPEFKyvANMHGDEVVGRELLLHLIE 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27436871 124 EILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWTTDRLWRKSRSPHNngtcfGTDLNRNFNASWcsigasrncqdqt 203
Cdd:cd03866  78 FLVTSYGSDPVITRLINSTRIHIMPSMNPDGFEATKKPDCYYTKGRYNKN-----GYDLNRNFPDAF------------- 139
                       170       180
                ....*....|....*....|...
gi 27436871 204 fcGTGPVS-EPETKAVASFIESK 225
Cdd:cd03866 140 --EENNVQrQPETRAVMDWIKNE 160
PRK10602 PRK10602
murein tripeptide amidase MpaA;
179-226 1.16e-03

murein tripeptide amidase MpaA;


Pssm-ID: 182582  Cd Length: 237  Bit Score: 40.01  E-value: 1.16e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 27436871  179 GTDLNRNFNAS----------WCSIGASRNCQDQTfcGTGPVSEPETKAVASFIESKK 226
Cdd:PRK10602  94 GVDLNRNFPAAnwkegetvyrWNSAAEERDVVLLT--GDKPGSEPETQALCQLIHRLQ 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH