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Conserved domains on  [gi|123314452|ref|NP_776115|]
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ubiquitin carboxyl-terminal hydrolase 43 isoform 1 [Mus musculus]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 1000871)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

CATH:  3.90.70.10
EC:  3.4.19.12
Gene Ontology:  GO:0016579|GO:0046872|GO:0003723

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
96-711 3.99e-74

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 263.28  E-value: 3.99e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452   96 RPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGR-------AEVTEQLAALVRALwtreYTPQLSA--- 165
Cdd:COG5560   261 KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEenplgmhGSVASAYADLIKQL----YDGNLHAftp 336
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  166 -EFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDL------EGSAHGLVSEQLPPEVSKISED------LRPSAAPTS 232
Cdd:COG5560   337 sGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLnriikkPYTSKPDLSPGDDVVVKKKAKEcwwehlKRNDSIITD 416
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  233 LgpsfvqshFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPilSTVAALRKM 312
Cdd:COG5560   417 L--------FQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDAS--STIRGLKKL 486
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  313 VAEEGGV-PAEEVILVELYPNGFQRSFFDEED--LNTIAEGDNVYAFqvppspglgtlSAHPSGLSVsprlPVrdsqrfs 389
Cdd:COG5560   487 VDAEYGKlGCFEIKVMCIYYGGNYNMLEPADKvlLQDIPQTDFVYLY-----------ETNDNGIEV----PV------- 544
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  390 gpLHSEnrvvflfcnlVGSGQQASR-FGPPFL---IREDRTISWAQLQQCILSKVRCLMRseVSAQDLGTlFSIRVVGLS 465
Cdd:COG5560   545 --VHLR----------IEKGYKSKRlFGDPFLqlnVLIKASIYDKLVKEFEELLVLVEMK--KTDVDLVS-EQVRLLREE 609
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  466 LACSYLSPKDNrplchwavdrALHLRRPGGPPHVKLAVEWDSSVTERLFGSLQEERVQDADSVW--RQQQAHQqPSCTLD 543
Cdd:COG5560   610 SSPSSWLKLET----------EIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWtiREIGAAE-RTITLQ 678
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  544 ECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMaphvaRRS 623
Cdd:COG5560   679 DCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDL-----SGV 753
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  624 TNSKAGPgpwsswkqpiclpttyplDFLYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEVNTRGAY 703
Cdd:COG5560   754 EYMVDDP------------------RLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAY 815

                  ....*...
gi 123314452  704 ILFYQKRN 711
Cdd:COG5560   816 VLFYRRKS 823
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
96-711 3.99e-74

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 263.28  E-value: 3.99e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452   96 RPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGR-------AEVTEQLAALVRALwtreYTPQLSA--- 165
Cdd:COG5560   261 KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEenplgmhGSVASAYADLIKQL----YDGNLHAftp 336
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  166 -EFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDL------EGSAHGLVSEQLPPEVSKISED------LRPSAAPTS 232
Cdd:COG5560   337 sGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLnriikkPYTSKPDLSPGDDVVVKKKAKEcwwehlKRNDSIITD 416
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  233 LgpsfvqshFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPilSTVAALRKM 312
Cdd:COG5560   417 L--------FQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDAS--STIRGLKKL 486
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  313 VAEEGGV-PAEEVILVELYPNGFQRSFFDEED--LNTIAEGDNVYAFqvppspglgtlSAHPSGLSVsprlPVrdsqrfs 389
Cdd:COG5560   487 VDAEYGKlGCFEIKVMCIYYGGNYNMLEPADKvlLQDIPQTDFVYLY-----------ETNDNGIEV----PV------- 544
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  390 gpLHSEnrvvflfcnlVGSGQQASR-FGPPFL---IREDRTISWAQLQQCILSKVRCLMRseVSAQDLGTlFSIRVVGLS 465
Cdd:COG5560   545 --VHLR----------IEKGYKSKRlFGDPFLqlnVLIKASIYDKLVKEFEELLVLVEMK--KTDVDLVS-EQVRLLREE 609
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  466 LACSYLSPKDNrplchwavdrALHLRRPGGPPHVKLAVEWDSSVTERLFGSLQEERVQDADSVW--RQQQAHQqPSCTLD 543
Cdd:COG5560   610 SSPSSWLKLET----------EIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWtiREIGAAE-RTITLQ 678
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  544 ECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMaphvaRRS 623
Cdd:COG5560   679 DCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDL-----SGV 753
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  624 TNSKAGPgpwsswkqpiclpttyplDFLYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEVNTRGAY 703
Cdd:COG5560   754 EYMVDDP------------------RLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAY 815

                  ....*...
gi 123314452  704 ILFYQKRN 711
Cdd:COG5560   816 VLFYRRKS 823
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
536-708 1.67e-64

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 217.93  E-value: 1.67e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  536 QQPSCTLDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNM 615
Cdd:cd02674    80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDL 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  616 APHVARRSTNSkagpgpwsswkqpiclpttyplDFLYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALRED 695
Cdd:cd02674   160 TPYVDTRSFTG----------------------PFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSES 217
                         170
                  ....*....|...
gi 123314452  696 EVNTRGAYILFYQ 708
Cdd:cd02674   218 SVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
542-707 2.06e-41

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 154.91  E-value: 2.06e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452   542 LDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSgLNMAPHVAR 621
Cdd:pfam00443  164 LQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEFPLE-LDLSRYLAE 242
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452   622 rstnsKAGPGPWSSWKqpiclpttypldflYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTV-EALREDEVNTR 700
Cdd:pfam00443  243 -----ELKPKTNNLQD--------------YRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVtEVDEETAVLSS 303

                   ....*..
gi 123314452   701 GAYILFY 707
Cdd:pfam00443  304 SAYILFY 310
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
96-711 3.99e-74

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 263.28  E-value: 3.99e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452   96 RPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGR-------AEVTEQLAALVRALwtreYTPQLSA--- 165
Cdd:COG5560   261 KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEenplgmhGSVASAYADLIKQL----YDGNLHAftp 336
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  166 -EFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDL------EGSAHGLVSEQLPPEVSKISED------LRPSAAPTS 232
Cdd:COG5560   337 sGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLnriikkPYTSKPDLSPGDDVVVKKKAKEcwwehlKRNDSIITD 416
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  233 LgpsfvqshFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPilSTVAALRKM 312
Cdd:COG5560   417 L--------FQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDAS--STIRGLKKL 486
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  313 VAEEGGV-PAEEVILVELYPNGFQRSFFDEED--LNTIAEGDNVYAFqvppspglgtlSAHPSGLSVsprlPVrdsqrfs 389
Cdd:COG5560   487 VDAEYGKlGCFEIKVMCIYYGGNYNMLEPADKvlLQDIPQTDFVYLY-----------ETNDNGIEV----PV------- 544
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  390 gpLHSEnrvvflfcnlVGSGQQASR-FGPPFL---IREDRTISWAQLQQCILSKVRCLMRseVSAQDLGTlFSIRVVGLS 465
Cdd:COG5560   545 --VHLR----------IEKGYKSKRlFGDPFLqlnVLIKASIYDKLVKEFEELLVLVEMK--KTDVDLVS-EQVRLLREE 609
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  466 LACSYLSPKDNrplchwavdrALHLRRPGGPPHVKLAVEWDSSVTERLFGSLQEERVQDADSVW--RQQQAHQqPSCTLD 543
Cdd:COG5560   610 SSPSSWLKLET----------EIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWtiREIGAAE-RTITLQ 678
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  544 ECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMaphvaRRS 623
Cdd:COG5560   679 DCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDL-----SGV 753
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  624 TNSKAGPgpwsswkqpiclpttyplDFLYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEVNTRGAY 703
Cdd:COG5560   754 EYMVDDP------------------RLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAY 815

                  ....*...
gi 123314452  704 ILFYQKRN 711
Cdd:COG5560   816 VLFYRRKS 823
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
536-708 1.67e-64

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 217.93  E-value: 1.67e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  536 QQPSCTLDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNM 615
Cdd:cd02674    80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDL 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  616 APHVARRSTNSkagpgpwsswkqpiclpttyplDFLYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALRED 695
Cdd:cd02674   160 TPYVDTRSFTG----------------------PFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSES 217
                         170
                  ....*....|...
gi 123314452  696 EVNTRGAYILFYQ 708
Cdd:cd02674   218 SVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
542-707 2.06e-41

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 154.91  E-value: 2.06e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452   542 LDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSgLNMAPHVAR 621
Cdd:pfam00443  164 LQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEFPLE-LDLSRYLAE 242
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452   622 rstnsKAGPGPWSSWKqpiclpttypldflYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTV-EALREDEVNTR 700
Cdd:pfam00443  243 -----ELKPKTNNLQD--------------YRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVtEVDEETAVLSS 303

                   ....*..
gi 123314452   701 GAYILFY 707
Cdd:pfam00443  304 SAYILFY 310
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
537-708 1.65e-40

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 150.33  E-value: 1.65e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  537 QPSCTLDECFQSYTKEEQLAQDDAWKCPHCQvLQQGVVKLSLWTLPDILIIHLKRFCQVGE-RRNKLSTLVKFPLSgLNM 615
Cdd:cd02257    96 LPQVSLEDCLEKFFKEEILEGDNCYKCEKKK-KQEATKRLKIKKLPPVLIIHLKRFSFNEDgTKEKLNTKVSFPLE-LDL 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  616 APHVARRSTNSKAGPGPwsswkqpiclpttypldFLYDLYAVCNHHG-SLQGGHYTAYCRNSLDGQWYSYDDSTVEALRE 694
Cdd:cd02257   174 SPYLSEGEKDSDSDNGS-----------------YKYELVAVVVHSGtSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSE 236
                         170
                  ....*....|....*....
gi 123314452  695 DEVNTRG-----AYILFYQ 708
Cdd:cd02257   237 EEVLEFGslsssAYILFYE 255
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
529-707 3.86e-35

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 137.12  E-value: 3.86e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  529 WRQQQAHQQPSCTLDECFQSYTKEEQLaQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQ-VGERRNKLSTLVK 607
Cdd:cd02660   165 WALGESGVSGTPTLSDCLDRFTRPEKL-GDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHsLNKTSRKIDTYVQ 243
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  608 FPLSgLNMAPHvarrsTNSKAGPGPWSSWKQPiclpttyplDFLYDLYAVCNHHGSLQGGHYTAYCRNSlDGQWYSYDDS 687
Cdd:cd02660   244 FPLE-LNMTPY-----TSSSIGDTQDSNSLDP---------DYTYDLFAVVVHKGTLDTGHYTAYCRQG-DGQWFKFDDA 307
                         170       180
                  ....*....|....*....|
gi 123314452  688 TVEALREDEVNTRGAYILFY 707
Cdd:cd02660   308 MITRVSEEEVLKSQAYLLFY 327
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
102-278 7.92e-30

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 121.01  E-value: 7.92e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452   102 GLKNHGNTCFMNAVVQCLSNTDLLAEFLA----LGRYRAAPGRAEVTEQLAALVRALW----TREYTPQlsaEFKNAVSK 173
Cdd:pfam00443    2 GLVNLGNTCYMNSVLQSLFSIPPFRDYLLrispLSEDSRYNKDINLLCALRDLFKALQknskSSSVSPK---MFKKSLGK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452   174 YGSQFQGNSQHDALEFLLWLLDRVHEDLEGSahglvseqlppevskisedlrpsaaPTSLGPSFVQSHFQAQYRSSLTCP 253
Cdd:pfam00443   79 LNPDFSGYKQQDAQEFLLFLLDGLHEDLNGN-------------------------HSTENESLITDLFRGQLKSRLKCL 133
                          170       180
                   ....*....|....*....|....*
gi 123314452   254 HCLKQSNTFDPFLCVSLPIPLRQTR 278
Cdd:pfam00443  134 SCGEVSETFEPFSDLSLPIPGDSAE 158
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
541-707 1.40e-27

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 114.30  E-value: 1.40e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  541 TLDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFcqVGERRNKLSTLVKFPLSgLNMAPHVA 620
Cdd:cd02661   163 SLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRF--SNFRGGKINKQISFPET-LDLSPYMS 239
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  621 RRSTNSkagpgpwsswkqpiclpttypldFLYDLYAVCNHHG-SLQGGHYTAYCRNSlDGQWYSYDDSTVEALREDEVNT 699
Cdd:cd02661   240 QPNDGP-----------------------LKYKLYAVLVHSGfSPHSGHYYCYVKSS-NGKWYNMDDSKVSPVSIETVLS 295

                  ....*...
gi 123314452  700 RGAYILFY 707
Cdd:cd02661   296 QKAYILFY 303
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
102-284 2.35e-25

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 105.83  E-value: 2.35e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  102 GLKNHGNTCFMNAVVQCLSNTdllaeflalgryraapgraevteqlaalvralwtreytpqlsaefknavskygsqfqgn 181
Cdd:cd02674     1 GLRNLGNTCYMNSILQCLSAD----------------------------------------------------------- 21
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  182 sQHDALEFLLWLLDRVHedlegsahglvseqlppevskisedlrpsaaptslgpSFVQSHFQAQYRSSLTCPHCLKQSNT 261
Cdd:cd02674    22 -QQDAQEFLLFLLDGLH-------------------------------------SIIVDLFQGQLKSRLTCLTCGKTSTT 63
                         170       180
                  ....*....|....*....|...
gi 123314452  262 FDPFLCVSLPIPLRQTRFLSVTL 284
Cdd:cd02674    64 FEPFTYLSLPIPSGSGDAPKVTL 86
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
542-711 2.12e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 102.72  E-value: 2.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  542 LDECFQSYTKEEQLAQDDAWKCPHCQvLQQGVVK-LSLWTLPDILIIHLKRF--CQVGERRNKLSTLVKFPLSgLNMAPH 618
Cdd:cd02659   153 LEESLDAYVQGETLEGDNKYFCEKCG-KKVDAEKgVCFKKLPPVLTLQLKRFefDFETMMRIKINDRFEFPLE-LDMEPY 230
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  619 VARrstnskagpgpwSSWKQPICLPTTYPLDFLYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEV- 697
Cdd:cd02659   231 TEK------------GLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAe 298
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 123314452  698 -------NTRG--------------AYILFYQKRN 711
Cdd:cd02659   299 eecfggeETQKtydsgprafkrttnAYMLFYERKS 333
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
537-708 7.53e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 94.30  E-value: 7.53e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  537 QPSCTLDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVG--ERRNKLSTLVKFPLSgLN 614
Cdd:cd02663   144 EQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEqlNRYIKLFYRVVFPLE-LR 222
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  615 MAphvarrSTNSKAgpgpwsswkqpiclptTYPlDFLYDLYAVCNHHGS-LQGGHYTAYCRNslDGQWYSYDDSTVEALR 693
Cdd:cd02663   223 LF------NTTDDA----------------ENP-DRLYELVAVVVHIGGgPNHGHYVSIVKS--HGGWLLFDDETVEKID 277
                         170       180
                  ....*....|....*....|...
gi 123314452  694 EDEV--------NTRGAYILFYQ 708
Cdd:cd02663   278 ENAVeeffgdspNQATAYVLFYQ 300
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
541-707 3.45e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 92.87  E-value: 3.45e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  541 TLDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFC---QVGERRnKLSTLVKFPLSgLNMAP 617
Cdd:cd02668   157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVfdrKTGAKK-KLNASISFPEI-LDMGE 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  618 HVARRSTNskagpgpwsswkqpiclpttyplDFLYDLYAVCNHHG-SLQGGHYTAYCRNSLDGQWYSYDDSTVEAL---- 692
Cdd:cd02668   235 YLAESDEG-----------------------SYVYELSGVLIHQGvSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMpgkp 291
                         170       180       190
                  ....*....|....*....|....*....|..
gi 123314452  693 ------------REDEVN-----TRGAYILFY 707
Cdd:cd02668   292 lklgnsedpakpRKSEIKkgthsSRTAYMLVY 323
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
540-708 7.24e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 90.91  E-value: 7.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  540 CTLDECFQSYTKEEQLAQDDAWkcpHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERR-NKLSTLVKFPlSGLNMAPH 618
Cdd:cd02667   111 CSIESCLKQFTEVEILEGNNKF---ACENCTKAKKQYLISKLPPVLVIHLKRFQQPRSANlRKVSRHVSFP-EILDLAPF 186
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  619 VARRSTNSKAGPgpwsswkqpiclpttyplDFLYDLYAVCNHHGSLQGGHYTAYCR------------NSLD-------- 678
Cdd:cd02667   187 CDPKCNSSEDKS------------------SVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrlsdltKSKPaadeagpg 248
                         170       180       190
                  ....*....|....*....|....*....|.
gi 123314452  679 -GQWYSYDDSTVEALREDEVNTRGAYILFYQ 708
Cdd:cd02667   249 sGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
102-273 6.42e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 88.87  E-value: 6.42e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  102 GLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVT-----EQLAAlvRALWTREYTPQlSAEFKNAVSKYGS 176
Cdd:cd02661     3 GLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCmmcalEAHVE--RALASSGPGSA-PRIFSSNLKQISK 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  177 QFQGNSQHDALEFLLWLLDRVHedlegsahglvSEQLPPevSKISEDLRPSAAPTSLgpsfVQSHFQAQYRSSLTCPHCL 256
Cdd:cd02661    80 HFRIGRQEDAHEFLRYLLDAMQ-----------KACLDR--FKKLKAVDPSSQETTL----VQQIFGGYLRSQVKCLNCK 142
                         170
                  ....*....|....*..
gi 123314452  257 KQSNTFDPFLCVSLPIP 273
Cdd:cd02661   143 HVSNTYDPFLDLSLDIK 159
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
102-283 3.88e-18

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 85.61  E-value: 3.88e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  102 GLKNHGNTCFMNAVVQCLSNtdllaeflalgryraapgraevteqlaalvralwtreytpqlsaefknavskygsqfqgn 181
Cdd:cd02257     1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  182 SQHDALEFLLWLLDRVHEDLEGSahglvseqlppevskisedlRPSAAPTSLGPSFVQSHFQAQYRSSLTCPHCLKQSNT 261
Cdd:cd02257    21 EQQDAHEFLLFLLDKLHEELKKS--------------------SKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVS 80
                         170       180
                  ....*....|....*....|..
gi 123314452  262 FDPFLCVSLPIPLRQTRFLSVT 283
Cdd:cd02257    81 TEPELFLSLPLPVKGLPQVSLE 102
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
101-279 2.38e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 81.65  E-value: 2.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  101 QGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGR--------AEVTEQLAALVRALWTREYTPqlsAEFKNAVS 172
Cdd:cd02660     1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLScspnsclsCAMDEIFQEFYYSGDRSPYGP---INLLYLSW 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  173 KYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSahglvseqlppevskisedlRPSAAPTSLGPSFVQSHFQAQYRSSLTC 252
Cdd:cd02660    78 KHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGD--------------------KNEANDESHCNCIIHQTFSGSLQSSVTC 137
                         170       180
                  ....*....|....*....|....*..
gi 123314452  253 PHCLKQSNTFDPFLCVSLPIPLRQTRF 279
Cdd:cd02660   138 QRCGGVSTTVDPFLDLSLDIPNKSTPS 164
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
102-273 6.39e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 76.27  E-value: 6.39e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  102 GLKNHGNTCFMNAVVQCLSNTDLLAEFLAlgryraapgraevteqlaalvralwtreYTPqlsAEFKNAVSKYGSQFQGN 181
Cdd:cd02667     1 GLSNLGNTCFFNAVMQNLSQTPALRELLS----------------------------ETP---KELFSQVCRKAPQFKGY 49
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  182 SQHDALEFLLWLLDRVHedlegsahglvseqlppevskisedlrpsaaptslgpSFVQSHFQAQYRSSLTCPHCLKQSNT 261
Cdd:cd02667    50 QQQDSHELLRYLLDGLR-------------------------------------TFIDSIFGGELTSTIMCESCGTVSLV 92
                         170
                  ....*....|..
gi 123314452  262 FDPFLCVSLPIP 273
Cdd:cd02667    93 YEPFLDLSLPRS 104
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-708 1.40e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 71.63  E-value: 1.40e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  533 QAHQQPSCTLDECFQSYTKEEQLaqDDAwKCPHCQvlqQGVVKLslwtlPDILIIHLKRFC---QVGERRNklSTLVKFP 609
Cdd:cd02662    89 NQSSGSGTTLEHCLDDFLSTEII--DDY-KCDRCQ---TVIVRL-----PQILCIHLSRSVfdgRGTSTKN--SCKVSFP 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  610 LsglnmaphvarrstnskagpgpwsswkqpiCLPttyplDFLYDLYAVCNHHGSLQGGHYTAYCRNSL------------ 677
Cdd:cd02662   156 E------------------------------RLP-----KVLYRLRAVVVHYGSHSSGHYVCYRRKPLfskdkepgsfvr 200
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 123314452  678 --------DGQWYSYDDSTVEALREDEV-NTRGAYILFYQ 708
Cdd:cd02662   201 mregpsstSHPWWRISDTTVKEVSESEVlEQKSAYMLFYE 240
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
521-697 1.81e-13

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 75.29  E-value: 1.81e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  521 RVQDadsVWRQQqAHQQPSCTLDECFQSYTKEEQLAQDDAWKCPH--CQVLQQGVVKLSLwtlPDILIIHLKRFCQVGER 598
Cdd:COG5077   323 RVED---FWDIQ-LNVKGMKNLQESFRRYIQVETLDGDNRYNAEKhgLQDAKKGVIFESL---PPVLHLQLKRFEYDFER 395
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  599 RN--KLSTLVKFPLSgLNMAPHVARRSTNSKAGpgpwsswkqpiclpttyplDFLYDLYAVCNHHGSLQGGHYTAYCRNS 676
Cdd:COG5077   396 DMmvKINDRYEFPLE-IDLLPFLDRDADKSENS-------------------DAVYVLYGVLVHSGDLHEGHYYALLKPE 455
                         170       180
                  ....*....|....*....|.
gi 123314452  677 LDGQWYSYDDSTVEALREDEV 697
Cdd:COG5077   456 KDGRWYKFDDTRVTRATEKEV 476
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
508-709 2.54e-13

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 71.76  E-value: 2.54e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  508 SVTERLFGSLQEERVQDADSVW-----RQQQAHQQPSCTLDECFQSYtkEEQ--------LAQDDAWKcphcqVLQQGVV 574
Cdd:COG5533   100 SFTIRIFKTTKDKKKTSTGDWFdiiieLPDQTWVNNLKTLQEFIDNM--EELvddetgvkAKENEELE-----VQAKQEY 172
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  575 KLSLWTLPDILIIHLKRFCQVGERRnKLSTLV--KFPLSGLNMAPHVARRSTnskagpgpwsswkqpiclpttypldfLY 652
Cdd:COG5533   173 EVSFVKLPKILTIQLKRFANLGGNQ-KIDTEVdeKFELPVKHDQILNIVKET--------------------------YY 225
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  653 DLYAVCNHHGSLQGGHYTAYCRNslDGQWYSYDDSTVEALREDE---VNTRGAYILFYQK 709
Cdd:COG5533   226 DLVGFVLHQGSLEGGHYIAYVKK--GGKWEKANDSDVTPVSEEEainEKAKNAYLYFYER 283
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
621-707 1.72e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 63.50  E-value: 1.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  621 RRSTNSKAgpgpwsswkqPICLPTTYPLDF----------LYDLYAVCNHHG-SLQGGHYTAYCRNSLDGQWYSYDDSTV 689
Cdd:cd02657   210 KRDIQKKA----------KILRKVKFPFELdlyelctpsgYYELVAVITHQGrSADSGHYVAWVRRKNDGKWIKFDDDKV 279
                          90       100
                  ....*....|....*....|....*
gi 123314452  690 EALREDEVNT-RG------AYILFY 707
Cdd:cd02657   280 SEVTEEDILKlSGggdwhiAYILLY 304
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
98-273 9.72e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 62.34  E-value: 9.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452   98 PGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGR-YRAAPGRA-EVTEQLAALVRALWT-REYTPQLSA-EFKNAVSK 173
Cdd:cd02669   117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYEnYENIKDRKsELVKRLSELIRKIWNpRNFKGHVSPhELLQAVSK 196
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  174 Y-GSQFQGNSQHDALEFLLWLLDRVHEDLEGSAH---GLVSEQLPPEVSKISEDLRPSAAPTSLGPSFVQSHFQAQYRSS 249
Cdd:cd02669   197 VsKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKpnsSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVS 276
                         170       180
                  ....*....|....*....|....
gi 123314452  250 ltcphclkqsntfdPFLCVSLPIP 273
Cdd:cd02669   277 --------------PFLLLTLDLP 286
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
541-707 1.38e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 61.06  E-value: 1.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  541 TLDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRN------KLSTLVKFPLsgln 614
Cdd:cd02671   181 TLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDcygglsKVNTPLLTPL---- 256
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  615 maphvarrstnsKAGPGPWSswkqpiclptTYPLDFLYDLYAVCNHHG-SLQGGHYTAYCRnsldgqWYSYDDSTVEALR 693
Cdd:cd02671   257 ------------KLSLEEWS----------TKPKNDVYRLFAVVMHSGaTISSGHYTAYVR------WLLFDDSEVKVTE 308
                         170       180
                  ....*....|....*....|...
gi 123314452  694 EDEV---------NTRGAYILFY 707
Cdd:cd02671   309 EKDFlealspntsSTSTPYLLFY 331
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
531-708 2.45e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 60.80  E-value: 2.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  531 QQQAHQQPSCTLDECFQSYTKEeqlaqddawkcpHCQVLQQGVVKLSLWTLPDILIIHLKRFCQ---VGErRNKlsTLVK 607
Cdd:cd02669   294 GNEENIIPQVPLKQLLKKYDGK------------TETELKDSLKRYLISRLPKYLIFHIKRFSKnnfFKE-KNP--TIVN 358
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  608 FPLSGLNMAPHVArrstnskagpgpwsSWKQPICLPTTypldflYDLYAVCNHHGSLQG-GHYTAYCRNSLDGQWYSYDD 686
Cdd:cd02669   359 FPIKNLDLSDYVH--------------FDKPSLNLSTK------YNLVANIVHEGTPQEdGTWRVQLRHKSTNKWFEIQD 418
                         170       180
                  ....*....|....*....|..
gi 123314452  687 STVEALREDEVNTRGAYILFYQ 708
Cdd:cd02669   419 LNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
522-708 2.61e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 60.03  E-value: 2.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  522 VQDADSVWRQQQAHQQPSCTLDECFQSYTKEEQLAQddawKCPHCQVLQQGVVKLSLWTLPDILIIHLKRF-CQVGERRN 600
Cdd:cd02658   160 VPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIED----FCSTCKEKTTATKTTGFKTFPDYLVINMKRFqLLENWVPK 235
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  601 KLSTLVKFPLSGlnmaphvarrstnskaGPGPwsswkqpiclpttypldflYDLYAVCNHHG-SLQGGHYTAYCRNSLD- 678
Cdd:cd02658   236 KLDVPIDVPEEL----------------GPGK-------------------YELIAFISHKGtSVHSGHYVAHIKKEIDg 280
                         170       180       190
                  ....*....|....*....|....*....|.
gi 123314452  679 -GQWYSYDDSTVEALREDEVNTRGAYILFYQ 708
Cdd:cd02658   281 eGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
102-197 1.58e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 57.72  E-value: 1.58e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  102 GLKNHGNTCFMNAVVQCLSNTDLLAEFlaLGRYRAAPGRAEV------TEQLAALVRALWTREYTPQLSAE--------- 166
Cdd:cd02658     1 GLRNLGNSCYLNSVLQVLFSIPSFQWR--YDDLENKFPSDVVdpandlNCQLIKLADGLLSGRYSKPASLKsendpyqvg 78
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 123314452  167 -----FKNAVSKYGSQFQGNSQHDALEFLLWLLDRV 197
Cdd:cd02658    79 ikpsmFKALIGKGHPEFSTMRQQDALEFLLHLIDKL 114
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
102-198 5.27e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 55.96  E-value: 5.27e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  102 GLKNHGNTCFMNAVVQCLSNT-----DLLAEFLALGRYRAAPGRAEVTEQLAALVRalwTREYTPQLSAEFKNAVSKYgs 176
Cdd:cd02664     1 GLINLGNTCYMNSVLQALFMAkdfrrQVLSLNLPRLGDSQSVMKKLQLLQAHLMHT---QRRAEAPPDYFLEASRPPW-- 75
                          90       100
                  ....*....|....*....|..
gi 123314452  177 qFQGNSQHDALEFLLWLLDRVH 198
Cdd:cd02664    76 -FTPGSQQDCSEYLRYLLDRLH 96
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
79-209 3.16e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 53.74  E-value: 3.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452   79 PDRPPGSQPQISSGDGARPPGaqGLKNHGNTCFMNAVVQCLsntdllaeflalgryRAAPGRAEVTEQLAALVRALWTRE 158
Cdd:cd02671     5 PAPQPSSATSCEKRENLLPFV--GLNNLGNTCYLNSVLQVL---------------YFCPGFKHGLKHLVSLISSVEQLQ 67
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 123314452  159 ---------YTPQLSAEFK----NAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSAHGLV 209
Cdd:cd02671    68 ssfllnpekYNDELANQAPrrllNALREVNPMYEGYLQHDAQEVLQCILGNIQELVEKDFQGQL 131
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
553-708 1.82e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 51.34  E-value: 1.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  553 EQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGER--RNKLSTLVKFPLSgLNMAPHVARRSTNSKAGP 630
Cdd:cd02664   147 EKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKThvREKIMDNVSINEV-LSLPVRVESKSSESPLEK 225
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  631 GPWSSWKQPICLPTTYPldflYDLYAVCNHHG-SLQGGHYTAYCRNS--------------------LDGQWYSYDDSTV 689
Cdd:cd02664   226 KEEESGDDGELVTRQVH----YRLYAVVVHSGySSESGHYFTYARDQtdadstgqecpepkdaeendESKNWYLFNDSRV 301
                         170       180
                  ....*....|....*....|....*...
gi 123314452  690 EALREDEV---------NTrgAYILFYQ 708
Cdd:cd02664   302 TFSSFESVqnvtsrfpkDT--PYILFYE 327
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
102-204 2.18e-06

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 50.57  E-value: 2.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  102 GLKNHGNTCFMNAVVQCLS-NTDLLAEFL--ALGRYRA------APGRAEVTEQLAALVRALWTREytpqlsaefknaVS 172
Cdd:COG5533     1 GLPNLGNTCFMNSVLQILAlYLPKLDELLddLSKELKVlknvirKPEPDLNQEEALKLFTALWSSK------------EH 68
                          90       100       110
                  ....*....|....*....|....*....|..
gi 123314452  173 KYGSQFQGNSQHDALEFLLWLLDRVHEDLEGS 204
Cdd:COG5533    69 KVGWIPPMGSQEDAHELLGKLLDELKLDLVNS 100
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
581-708 2.43e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 50.22  E-value: 2.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  581 LPDILIIHLKRFCQVGERRNKLSTLVkFPLSGLNMAPHVA-RRSTNSKAGPGPWSSWKQPICLPTtyPLDFLYDL-YAVC 658
Cdd:cd02670    98 APSCLIICLKRYGKTEGKAQKMFKKI-LIPDEIDIPDFVAdDPRACSKCQLECRVCYDDKDFSPT--CGKFKLSLcSAVC 174
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  659 NHHGSLQGGHYTAYCRNS-----------LDGQWYSYDDStveALREDEVN---------TRGAYILFYQ 708
Cdd:cd02670   175 HRGTSLETGHYVAFVRYGsysltetdneaYNAQWVFFDDM---ADRDGVSNgfnipaarlLEDPYMLFYQ 241
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
102-213 1.14e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 48.13  E-value: 1.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  102 GLKNHGNTCFMNAVVQCLSNTDLLAEFLalgryraapgraevteqlaalvralwtreytpqlsAEFKNavskygsqfqgn 181
Cdd:cd02662     1 GLVNLGNTCFMNSVLQALASLPSLIEYL-----------------------------------EEFLE------------ 33
                          90       100       110
                  ....*....|....*....|....*....|..
gi 123314452  182 sQHDALEFLLWLLDRVHEDLEGSAHGLVSEQL 213
Cdd:cd02662    34 -QQDAHELFQVLLETLEQLLKFPFDGLLASRI 64
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
102-205 1.71e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 45.01  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123314452  102 GLKNHGNTCFMNAVVQCL-SNTDLLaefLALGRYraAPGRAEVTEQLAALVRALwtREYTPQLS--------AEFKNAVS 172
Cdd:cd02657     1 GLTNLGNTCYLNSTLQCLrSVPELR---DALKNY--NPARRGANQSSDNLTNAL--RDLFDTMDkkqepvppIEFLQLLR 73
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 123314452  173 KYGSQF-----QGN-SQHDALEFLLWLLDRVHEDLEGSA 205
Cdd:cd02657    74 MAFPQFaekqnQGGyAQQDAEECWSQLLSVLSQKLPGAG 112
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
652-707 4.57e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 43.29  E-value: 4.57e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 123314452  652 YDLYAVCNHHG-SLQGGHYTAYCRNSLDG-QWYSYDDSTVEALREDEVN---TRGAYILFY 707
Cdd:cd02673   184 YSLVAVICHLGeSPYDGHYIAYTKELYNGsSWLYCSDDEIRPVSKNDVStnaRSSGYLIFY 244
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
649-707 5.57e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 43.63  E-value: 5.57e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 123314452  649 DFLYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEV------NTRGAYILFY 707
Cdd:cd02666   278 SYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVflftlgNTATPYFLVY 342
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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