NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|134288863|ref|NP_776182|]
View 

receptor-transporting protein 5 [Homo sapiens]

Protein Classification

3CxxC-type zinc finger protein( domain architecture ID 10616235)

3CxxC-type zinc finger protein similar to zygote arrest protein 1 (ZAR1) and its homologues, ZAR1-like proteins, and receptor-transporting proteins 1-5 (RTP1-5)

Gene Ontology:  GO:0008270

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-3CxxC pfam13695
Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing ...
 53-150 1.55e-22

Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing a multiple zinc-binding region. Only one pair of cysteines is associated with a highly conserved histidine residue.


:

Pssm-ID: 463958  Cd Length: 96  Bit Score: 92.10  E-value: 1.55e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134288863   53 RLQCGHCPGTWDSAHVHVLFHLWWDRAShRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFLSRLVLHILQDCYGDGPGP 132
Cdd:pfam13695   5 RFRCSSCSRKWTSAKVWITIRMYLDPPG-NGTYNARVYGQRCKKCKRLERPELDEEEVERVLYRLKKKIEKPCYGEKTTG 83

                          90
                  ....*....|....*...
gi 134288863  133 aRHPREAyegcCEACELG 150
Cdd:pfam13695  84 -PHERDL----CEGCKLG 96
 
Name Accession Description Interval E-value
zf-3CxxC pfam13695
Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing ...
 53-150 1.55e-22

Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing a multiple zinc-binding region. Only one pair of cysteines is associated with a highly conserved histidine residue.


Pssm-ID: 463958  Cd Length: 96  Bit Score: 92.10  E-value: 1.55e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134288863   53 RLQCGHCPGTWDSAHVHVLFHLWWDRAShRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFLSRLVLHILQDCYGDGPGP 132
Cdd:pfam13695   5 RFRCSSCSRKWTSAKVWITIRMYLDPPG-NGTYNARVYGQRCKKCKRLERPELDEEEVERVLYRLKKKIEKPCYGEKTTG 83

                          90
                  ....*....|....*...
gi 134288863  133 aRHPREAyegcCEACELG 150
Cdd:pfam13695  84 -PHERDL----CEGCKLG 96
 
Name Accession Description Interval E-value
zf-3CxxC pfam13695
Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing ...
 53-150 1.55e-22

Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing a multiple zinc-binding region. Only one pair of cysteines is associated with a highly conserved histidine residue.


Pssm-ID: 463958  Cd Length: 96  Bit Score: 92.10  E-value: 1.55e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134288863   53 RLQCGHCPGTWDSAHVHVLFHLWWDRAShRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFLSRLVLHILQDCYGDGPGP 132
Cdd:pfam13695   5 RFRCSSCSRKWTSAKVWITIRMYLDPPG-NGTYNARVYGQRCKKCKRLERPELDEEEVERVLYRLKKKIEKPCYGEKTTG 83

                          90
                  ....*....|....*...
gi 134288863  133 aRHPREAyegcCEACELG 150
Cdd:pfam13695  84 -PHERDL----CEGCKLG 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH