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Conserved domains on  [gi|27923919|ref|NP_778188|]
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E3 ubiquitin-protein ligase RBBP6 isoform 2 [Mus musculus]

Protein Classification

DWNN domain-containing protein( domain architecture ID 10555705)

DWNN domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DWNN pfam08783
DWNN domain; DWNN is a ubiquitin like domain found at the N terminus of the RBBP6 family of ...
 4-76 3.37e-38

DWNN domain; DWNN is a ubiquitin like domain found at the N terminus of the RBBP6 family of splicing-associated proteins. The DWNN domain is independently expressed in higher vertebrates so it may function as a novel ubiquitin-like modifier of other proteins.


:

Pssm-ID: 462603  Cd Length: 74  Bit Score: 123.34  E-value: 3.37e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 27923919     4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIP 76
Cdd:pfam08783   1 VYYKFKSQKDYSRITFDGTGISVFDLKREIILQKKLgKGTDFDLLIYNAQTNEEYKDDTTLIPRNTSVIVRRVP 74
 
Name Accession Description Interval E-value
DWNN pfam08783
DWNN domain; DWNN is a ubiquitin like domain found at the N terminus of the RBBP6 family of ...
 4-76 3.37e-38

DWNN domain; DWNN is a ubiquitin like domain found at the N terminus of the RBBP6 family of splicing-associated proteins. The DWNN domain is independently expressed in higher vertebrates so it may function as a novel ubiquitin-like modifier of other proteins.


Pssm-ID: 462603  Cd Length: 74  Bit Score: 123.34  E-value: 3.37e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 27923919     4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIP 76
Cdd:pfam08783   1 VYYKFKSQKDYSRITFDGTGISVFDLKREIILQKKLgKGTDFDLLIYNAQTNEEYKDDTTLIPRNTSVIVRRVP 74
COG5222 COG5222
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
2-88 1.01e-19

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


Pssm-ID: 227547 [Multi-domain]  Cd Length: 427  Bit Score: 82.87  E-value: 1.01e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27923919   2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGGV 80
Cdd:COG5222   3 SVINYRFKSQKNFSRISFDGTGLPVFDLKREIINQRKLgSGKDFDLLFYNGETNEEYDDDYFVIPRSTSVIVSRIPAWKS 82


                ....*...
gi 27923919  81 KSTSKTYV 88
Cdd:COG5222  83 KGTAARYK 90
 
Name Accession Description Interval E-value
DWNN pfam08783
DWNN domain; DWNN is a ubiquitin like domain found at the N terminus of the RBBP6 family of ...
 4-76 3.37e-38

DWNN domain; DWNN is a ubiquitin like domain found at the N terminus of the RBBP6 family of splicing-associated proteins. The DWNN domain is independently expressed in higher vertebrates so it may function as a novel ubiquitin-like modifier of other proteins.


Pssm-ID: 462603  Cd Length: 74  Bit Score: 123.34  E-value: 3.37e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 27923919     4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIP 76
Cdd:pfam08783   1 VYYKFKSQKDYSRITFDGTGISVFDLKREIILQKKLgKGTDFDLLIYNAQTNEEYKDDTTLIPRNTSVIVRRVP 74
COG5222 COG5222
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
2-88 1.01e-19

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


Pssm-ID: 227547 [Multi-domain]  Cd Length: 427  Bit Score: 82.87  E-value: 1.01e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27923919   2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGGV 80
Cdd:COG5222   3 SVINYRFKSQKNFSRISFDGTGLPVFDLKREIINQRKLgSGKDFDLLFYNGETNEEYDDDYFVIPRSTSVIVSRIPAWKS 82


                ....*...
gi 27923919  81 KSTSKTYV 88
Cdd:COG5222  83 KGTAARYK 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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