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intermembrane lipid transfer protein VPS13B [Mus musculus]
List of domain hits
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Name | Accession | Description | Interval | E-value | ||||
Chorein_N | pfam12624 | N-terminal region of Chorein or VPS13; Although mutations in the full-length vacuolar protein ... |
2-94 | 9.42e-30 | ||||
N-terminal region of Chorein or VPS13; Although mutations in the full-length vacuolar protein sorting 13A (VPS13A) protein in vertebrates lead to the disease of chorea-acanthocytosis, the exact function of any of the regions within the protein is not yet known. This region is the proposed leucine zipper at the N-terminus. The full-length protein is a transmembrane protein with a presumed role in vesicle-mediated sorting and intracellular protein transport. : Pssm-ID: 463646 Cd Length: 116 Bit Score: 116.13 E-value: 9.42e-30
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VPS13_C super family | cl25193 | Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar ... |
3557-3703 | 5.22e-25 | ||||
Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar sorting-associated 13 proteins that lies at the C-terminus of the members, The exact function of this domain is not known. The actual alignment was detected with superfamily member pfam16909: Pssm-ID: 465310 [Multi-domain] Cd Length: 175 Bit Score: 104.55 E-value: 5.22e-25
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ATG_C super family | cl07826 | Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral ... |
3716-3809 | 3.34e-05 | ||||
Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral membrane protein. It functions in both cytoplasm-to-vacuole targeting and in autophagy. The actual alignment was detected with superfamily member pfam09333: Pssm-ID: 462761 [Multi-domain] Cd Length: 96 Bit Score: 45.19 E-value: 3.34e-05
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SHR-BD super family | cl05933 | SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic ... |
2605-2685 | 1.22e-04 | ||||
SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic proteins found on vacuolar-sorting associated proteins towards the C-terminus. In plants, the domain is found to be the region which interacts with SHR or the SHORT-ROOT transcription factor, a regulator of root-growth and asymmetric cell division that separates ground tissue into endodermis and cortex. The plant protein containing the SHR-BD is named SHRUBBY or SHBY, UniProtKB:Q9FT44. The actual alignment was detected with superfamily member pfam06650: Pssm-ID: 461974 [Multi-domain] Cd Length: 275 Bit Score: 46.91 E-value: 1.22e-04
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Name | Accession | Description | Interval | E-value | ||||
Chorein_N | pfam12624 | N-terminal region of Chorein or VPS13; Although mutations in the full-length vacuolar protein ... |
2-94 | 9.42e-30 | ||||
N-terminal region of Chorein or VPS13; Although mutations in the full-length vacuolar protein sorting 13A (VPS13A) protein in vertebrates lead to the disease of chorea-acanthocytosis, the exact function of any of the regions within the protein is not yet known. This region is the proposed leucine zipper at the N-terminus. The full-length protein is a transmembrane protein with a presumed role in vesicle-mediated sorting and intracellular protein transport. Pssm-ID: 463646 Cd Length: 116 Bit Score: 116.13 E-value: 9.42e-30
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VPS13_C | pfam16909 | Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar ... |
3557-3703 | 5.22e-25 | ||||
Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar sorting-associated 13 proteins that lies at the C-terminus of the members, The exact function of this domain is not known. Pssm-ID: 465310 [Multi-domain] Cd Length: 175 Bit Score: 104.55 E-value: 5.22e-25
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MRS6 | COG5043 | Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; |
3596-3796 | 1.79e-16 | ||||
Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; Pssm-ID: 227376 [Multi-domain] Cd Length: 2552 Bit Score: 87.63 E-value: 1.79e-16
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MRS6 | COG5043 | Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; |
1-83 | 3.69e-11 | ||||
Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; Pssm-ID: 227376 [Multi-domain] Cd Length: 2552 Bit Score: 69.91 E-value: 3.69e-11
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ATG_C | pfam09333 | Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral ... |
3716-3809 | 3.34e-05 | ||||
Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral membrane protein. It functions in both cytoplasm-to-vacuole targeting and in autophagy. Pssm-ID: 462761 [Multi-domain] Cd Length: 96 Bit Score: 45.19 E-value: 3.34e-05
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SHR-BD | pfam06650 | SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic ... |
2605-2685 | 1.22e-04 | ||||
SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic proteins found on vacuolar-sorting associated proteins towards the C-terminus. In plants, the domain is found to be the region which interacts with SHR or the SHORT-ROOT transcription factor, a regulator of root-growth and asymmetric cell division that separates ground tissue into endodermis and cortex. The plant protein containing the SHR-BD is named SHRUBBY or SHBY, UniProtKB:Q9FT44. Pssm-ID: 461974 [Multi-domain] Cd Length: 275 Bit Score: 46.91 E-value: 1.22e-04
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Name | Accession | Description | Interval | E-value | ||||
Chorein_N | pfam12624 | N-terminal region of Chorein or VPS13; Although mutations in the full-length vacuolar protein ... |
2-94 | 9.42e-30 | ||||
N-terminal region of Chorein or VPS13; Although mutations in the full-length vacuolar protein sorting 13A (VPS13A) protein in vertebrates lead to the disease of chorea-acanthocytosis, the exact function of any of the regions within the protein is not yet known. This region is the proposed leucine zipper at the N-terminus. The full-length protein is a transmembrane protein with a presumed role in vesicle-mediated sorting and intracellular protein transport. Pssm-ID: 463646 Cd Length: 116 Bit Score: 116.13 E-value: 9.42e-30
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VPS13_C | pfam16909 | Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar ... |
3557-3703 | 5.22e-25 | ||||
Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar sorting-associated 13 proteins that lies at the C-terminus of the members, The exact function of this domain is not known. Pssm-ID: 465310 [Multi-domain] Cd Length: 175 Bit Score: 104.55 E-value: 5.22e-25
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MRS6 | COG5043 | Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; |
3596-3796 | 1.79e-16 | ||||
Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; Pssm-ID: 227376 [Multi-domain] Cd Length: 2552 Bit Score: 87.63 E-value: 1.79e-16
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MRS6 | COG5043 | Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; |
1-83 | 3.69e-11 | ||||
Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; Pssm-ID: 227376 [Multi-domain] Cd Length: 2552 Bit Score: 69.91 E-value: 3.69e-11
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ATG_C | pfam09333 | Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral ... |
3716-3809 | 3.34e-05 | ||||
Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral membrane protein. It functions in both cytoplasm-to-vacuole targeting and in autophagy. Pssm-ID: 462761 [Multi-domain] Cd Length: 96 Bit Score: 45.19 E-value: 3.34e-05
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SHR-BD | pfam06650 | SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic ... |
2605-2685 | 1.22e-04 | ||||
SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic proteins found on vacuolar-sorting associated proteins towards the C-terminus. In plants, the domain is found to be the region which interacts with SHR or the SHORT-ROOT transcription factor, a regulator of root-growth and asymmetric cell division that separates ground tissue into endodermis and cortex. The plant protein containing the SHR-BD is named SHRUBBY or SHBY, UniProtKB:Q9FT44. Pssm-ID: 461974 [Multi-domain] Cd Length: 275 Bit Score: 46.91 E-value: 1.22e-04
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Blast search parameters | ||||
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