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Conserved domains on  [gi|31563364|ref|NP_852129|]
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large ribosomal subunit protein mL55 isoform a [Homo sapiens]

Protein Classification

Mitoc_L55 domain-containing protein( domain architecture ID 10561101)

Mitoc_L55 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mitoc_L55 pfam09776
Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial ...
 11-125 1.59e-64

Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.


:

Pssm-ID: 462893  Cd Length: 115  Bit Score: 191.49  E-value: 1.59e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31563364    11 LRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERR 90
Cdd:pfam09776   1 LRQSGVRAALPSSCCLHTSSWRADSNRASLTRIHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPVDLDTLSPEERR 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 31563364    91 ARLRKREAQLQSRKEYEQELSDDLHVERYRQFWTR 125
Cdd:pfam09776  81 ARLRKREAQLQEKKEEEPELEDDFDVERYKKFWTK 115
 
Name Accession Description Interval E-value
Mitoc_L55 pfam09776
Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial ...
 11-125 1.59e-64

Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.


Pssm-ID: 462893  Cd Length: 115  Bit Score: 191.49  E-value: 1.59e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31563364    11 LRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERR 90
Cdd:pfam09776   1 LRQSGVRAALPSSCCLHTSSWRADSNRASLTRIHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPVDLDTLSPEERR 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 31563364    91 ARLRKREAQLQSRKEYEQELSDDLHVERYRQFWTR 125
Cdd:pfam09776  81 ARLRKREAQLQEKKEEEPELEDDFDVERYKKFWTK 115
 
Name Accession Description Interval E-value
Mitoc_L55 pfam09776
Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial ...
 11-125 1.59e-64

Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.


Pssm-ID: 462893  Cd Length: 115  Bit Score: 191.49  E-value: 1.59e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31563364    11 LRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERR 90
Cdd:pfam09776   1 LRQSGVRAALPSSCCLHTSSWRADSNRASLTRIHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPVDLDTLSPEERR 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 31563364    91 ARLRKREAQLQSRKEYEQELSDDLHVERYRQFWTR 125
Cdd:pfam09776  81 ARLRKREAQLQEKKEEEPELEDDFDVERYKKFWTK 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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