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Conserved domains on  [gi|149944459|ref|NP_858041|]
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UPF0450 protein C17orf58 isoform a [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NTR_like super family cl02512
NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in ...
1-75 3.68e-14

NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the domain plays a role in controlling axon branching in neural development, while the common function of these modules in TIMPs appears to be binding to metzincins. A subset of this family is also known as the C345C domain because it occurs as a C-terminal domain in complement C3, C4 and C5. In C5, the domain interacts with various partners during the formation of the membrane attack complex.


The actual alignment was detected with superfamily member cd03576:

Pssm-ID: 470599  Cd Length: 124  Bit Score: 62.79  E-value: 3.68e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 149944459   1 MNRLYLTPDGFFFRVHMLALDssscnKPCPEFKPGSRYIVMGHIYH-KRRQLPTAllQVLRGRLRPGDGLLRSSSS 75
Cdd:cd03576   53 EGRLAITQAGKTMSVKITVVC-----KQCPLLRRGLNYILMGQVDEeGRGVIPPE--SFVMLYKTKHQKLLAALSN 121
 
Name Accession Description Interval E-value
NTR_PCOLCE cd03576
NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are ...
1-75 3.68e-14

NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.


Pssm-ID: 239631  Cd Length: 124  Bit Score: 62.79  E-value: 3.68e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 149944459   1 MNRLYLTPDGFFFRVHMLALDssscnKPCPEFKPGSRYIVMGHIYH-KRRQLPTAllQVLRGRLRPGDGLLRSSSS 75
Cdd:cd03576   53 EGRLAITQAGKTMSVKITVVC-----KQCPLLRRGLNYILMGQVDEeGRGVIPPE--SFVMLYKTKHQKLLAALSN 121
 
Name Accession Description Interval E-value
NTR_PCOLCE cd03576
NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are ...
1-75 3.68e-14

NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.


Pssm-ID: 239631  Cd Length: 124  Bit Score: 62.79  E-value: 3.68e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 149944459   1 MNRLYLTPDGFFFRVHMLALDssscnKPCPEFKPGSRYIVMGHIYH-KRRQLPTAllQVLRGRLRPGDGLLRSSSS 75
Cdd:cd03576   53 EGRLAITQAGKTMSVKITVVC-----KQCPLLRRGLNYILMGQVDEeGRGVIPPE--SFVMLYKTKHQKLLAALSN 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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