|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
3576-3657 |
4.65e-21 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 89.57 E-value: 4.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3576 KYLRASSFRKALIYQKKYLLLLLGGFQECEDVTLGVLARMGGHLALKDSKtitnhPKAFSRFRSAVRVSIAISRMKFLVR 3655
Cdd:pfam10495 1 KLLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS-----RKPRRKLKSAALAVIAIARMKRLAR 75
|
..
gi 125661048 3656 RW 3657
Cdd:pfam10495 76 EW 77
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
138-946 |
8.22e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 8.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 138 DIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQHLQANE 217
Cdd:TIGR02168 233 RLEELREELEELQEEL-KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 218 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKdrkiENLNAKeIQEKQALIDELNT 297
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL----EELESR-LEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 298 RVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNE--RKCSEEIKELMRTVEELQKRNLKDSWL 375
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqAELEELEEELEELQEELERLEEALEEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 376 ETS--AVRRVEQETQRKLSHLQAELDEM-----------YGKQIVQMKQELINQHMSQIEEL---KSQHKREMENTLKSD 439
Cdd:TIGR02168 467 REEleEAEQALDAAERELAQLQARLDSLerlqenlegfsEGVKALLKNQSGLSGILGVLSELisvDEGYEAAIEAALGGR 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 440 TNAAISK------------EQVNLMNAAINELNV-RLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQ 506
Cdd:TIGR02168 547 LQAVVVEnlnaakkaiaflKQNELGRVTFLPLDSiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVL 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 507 KArQTIAEQENRLSEARKSLSTVEdLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERL 586
Cdd:TIGR02168 627 VV-DDLDNALELAKKLRPGYRIVT-LDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAE-LEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 587 RTQLlfsheEELSKLKEDLEVEhrinieklkdnlgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDl 666
Cdd:TIGR02168 704 RKEL-----EELEEELEQLRKE----------------LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA- 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 667 qeclvnskseemnlQINELQKEIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAenniLKEEKR 746
Cdd:TIGR02168 762 --------------EIEELEERLEEAEEELAE---AEAEIEELEAQIEQLKEELKALREALDELRAELTL----LNEEAA 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 747 VLEDKLkmyspsEQEERSIAvdpstsksadsRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQ 826
Cdd:TIGR02168 821 NLRERL------ESLERRIA-----------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 827 REYTCLLKIRDDLEATQTKQAlEYESKLRALEEELLSKRGNPAAPKGKSSGIfpseTLEIGEVVEKdtteLMEKLEVTKR 906
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQLELRLEGL----EVRIDNLQER----LSEEYSLTLE 954
|
810 820 830 840
....*....|....*....|....*....|....*....|
gi 125661048 907 EKLELSEKVSGLSEQLKQthctinslsaEVRALKQEKEQL 946
Cdd:TIGR02168 955 EAEALENKIEDDEEEARR----------RLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1791-2502 |
5.44e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.49 E-value: 5.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1791 RLQAAVEKLLEAISETNTQLEHAKvTQTELMrESFRQKQEATESLHCL------EELRERLQEESRAREQLAEELNKAES 1864
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKSLE-RQAEKA-ERYKELKAELRELELAllvlrlEELREELEELQEELKEAEEELEELTA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1865 VIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQfLQETEKLM 1944
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK-LDELAEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1945 KEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQE---KNAELTDLRQQSQALEKQLEKMRKFLdeQAIDREHE 2021
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQletLRSKVAQLELQIASLNNEIERLEARL--ERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2022 RDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQ- 2100
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERl 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2101 ------------ALLASAEPFPKVEDQKRSG-AVEADPELSLEVQLQ-------VERDATDR------KQKEI------- 2147
Cdd:TIGR02168 498 qenlegfsegvkALLKNQSGLSGILGVLSELiSVDEGYEAAIEAALGgrlqavvVENLNAAKkaiaflKQNELgrvtflp 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2148 --TNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQ----------ELQQENRLFKDEIEKLGFAMKESDSVsT 2215
Cdd:TIGR02168 578 ldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKKLRPGYRIVTLDGDLV-R 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2216 RDQPMLFG--KFAQLIQEKEIEIDRLNEQFIKLQQQL--------KLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKK 2285
Cdd:TIGR02168 657 PGGVITGGsaKTNSSILERRREIEELEEKIEELEEKIaelekalaELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2286 QREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKH----QLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEIN 2361
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2362 FKMDQITQSLCNLNKECASNE-ELPSLPKESVHMT------VHELGSDNLQPEDAPAQ--DVTKPLEKQTSLTRLQKSPE 2432
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATErRLEDLEEQIEELSedieslAAEIEELEELIEELESEleALLNERASLEEALALLRSEL 896
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 125661048 2433 ASRTQEIESLASSVGAKDVELTQCREQTETIQ---EQAQSETDRLQKKLTDLQRSLEKFAAALVSQVQMEAAQ 2502
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLElrlEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
128-729 |
4.54e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 4.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 128 VEKELAEKQHDIEELTQELEEMRAsfgteglkQLQEFEAAIKQRDGIITQLTANLQQARRekddtmvEFLELTEQSQKLQ 207
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEA--------ELAELEAELEELRLELEELELELEEAQA-------EEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 208 IQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIEnlnakEIQE 287
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA-----ELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 288 KQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQK 367
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 368 RNLKDSwLETSAVRRVEQETQRKLSHLQAELDEMygKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKE 447
Cdd:COG1196 457 EEEALL-ELLAELLEEAALLEAALAELLEELAEA--AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 448 QV------NLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSE 521
Cdd:COG1196 534 AAyeaaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 522 ARKSLSTVEDLKAEIVAASESRKELELKHEAEITnyKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKL 601
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR--EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 602 KEDLEVEHRINIEKLKDnlgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEclvnSKSEEMNLQ 681
Cdd:COG1196 692 ELELEEALLAEEEEERE------LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA----LEELPEPPD 761
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 125661048 682 INELQKEIEILKQEEKEKGTL----EQEVQELQlktEQLEKqLKEKEDDLQE 729
Cdd:COG1196 762 LEELERELERLEREIEALGPVnllaIEEYEELE---ERYDF-LSEQREDLEE 809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
250-955 |
6.54e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 6.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 250 KKEEDLQAQIS-----FLQEKLRAFEMEKDRkienlNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH 324
Cdd:TIGR02168 220 AELRELELALLvlrleELREELEELQEELKE-----AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 325 EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKrnlkdswlETSAVRRVEQETQRKLSHLQAELDEMygK 404
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE--------ELAELEEKLEELKEELESLEAELEEL--E 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 405 QIVQMKQELINQHMSQIEELKSQhKREMENTLKSDTNaaiskeQVNLMNAAINELNVRLQETHAQKEELKGELgvVLGEK 484
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSK-VAQLELQIASLNN------EIERLEARLERLEDRRERLQQEIEELLKKL--EEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 485 SALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEaEITNYKIKLEML 564
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE-GFSEGVKALLKN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 565 EKEKNAVLDRMAESQEAElERLRTQLlfshEEELSKLKEDLEVE----HRINIEKLKDN---------LGIHYKQQIDGL 631
Cdd:TIGR02168 515 QSGLSGILGVLSELISVD-EGYEAAI----EAALGGRLQAVVVEnlnaAKKAIAFLKQNelgrvtflpLDSIKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 632 QNEMNRKMESMQCETDNLITQQNQL-------------------ILENSKLRDLQECLV-------------NSKSEEMN 679
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddldnALELAKKLRPGYRIVtldgdlvrpggviTGGSAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 680 LQINELQKEIEilkqeekekgTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSE 759
Cdd:TIGR02168 670 SSILERRREIE----------ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 760 QEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVN---YQELQREYTCLLKIR 836
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELTLLNEEA 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 837 DDLEATQTKQALEYESKLRALEEELLSKRGNPAAPKGKSSGIFPSETLEigEVVEKDTTELMEKLEVTKREKLELSEKVS 916
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI--EELESELEALLNERASLEEALALLRSELE 897
|
730 740 750
....*....|....*....|....*....|....*....
gi 125661048 917 GLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELEL 955
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
125-637 |
9.08e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 9.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 125 LQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAI-------KQRDGIITQLTANLQQARREKDDTMVEFL 197
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQDIarleerrRELEERLEELEEELAELEEELEELEEELE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 198 ELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKI 277
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 278 ENLNA--KEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEI 355
Cdd:COG1196 421 EELEEleEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 356 KELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVqmkQELINQHMSQIEELKSQHKREMEnT 435
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV---VEDDEVAAAAIEYLKAAKAGRAT-F 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 436 LKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ 515
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 516 ENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQLLFSHE 595
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE-EELEEEALEEQLEAERE 735
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 125661048 596 EELSKLKEDLEVEHRINIEKLKDNLGIH-YKQQIDGLQNEMNR 637
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEeLERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1850-2344 |
2.04e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 2.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1850 RAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEA 1929
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1930 GPVEQQFLQETEKLMKEKLEVQcQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRK 2009
Cdd:COG1196 326 AELEEELEELEEELEELEEELE-EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2010 fLDEQAIDREHERDVFQQEIQKLEHQLKAVpRIQPVSEHQA-----REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQER 2084
Cdd:COG1196 405 -LEEAEEALLERLERLEEELEELEEALAEL-EEEEEEEEEAleeaaEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2085 NEEIEKLEcRVRELEQALLASAEPFP--------KVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQ 2156
Cdd:COG1196 483 LEELAEAA-ARLLLLLEAEADYEGFLegvkaallLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2157 FREELENKNDEVQELLMQLEIQRKESTTRLQE----------LQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFA 2226
Cdd:COG1196 562 AIEYLKAAKAGRATFLPLDKIRARAALAAALArgaigaavdlVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVT 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2227 QLIQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVV 2306
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
490 500 510
....*....|....*....|....*....|....*...
gi 125661048 2307 STEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2344
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
162-750 |
2.40e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 2.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 162 QEFEAAIKQRDGIITQLTANLQQARREkddtmveflELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQ 241
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELE---------ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 242 QQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENLN--AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADEL 319
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAelEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 320 LGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELD 399
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 400 EmygKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELN-----VRLQETHAQKEELK 474
Cdd:COG1196 447 A---AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 475 GELGVVLGEKSALQSQSNDLLEEVrfLREQVQKARQTIAEQENRLSEARKSLSTVEDL-KAEIVAASESRKELELKHEAE 553
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAA--LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLdKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 554 ITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEH----RINIEKLKDNLGIHYKQQID 629
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSaggsLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 630 GLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLV----NSKSEEMNLQINELQKEIEILKQEEKEKGTLEQE 705
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEealeEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 706 VQELQLKTEQLEKQLKEKE----------DDLQEKCAQLDAENNILKEEKRVLED 750
Cdd:COG1196 762 LEELERELERLEREIEALGpvnllaieeyEELEERYDFLSEQREDLEEARETLEE 816
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1971-2301 |
3.11e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 3.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1971 DVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQaidrehERDVFQQEIQKLEHQLKavpriqpvSEHQA 2050
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL------SRQISALRKDLARLEAE--------VEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2051 REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEAdpeLSLE 2130
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA---ANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2131 VQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEV---QELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAM 2207
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeelEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2208 KESDSVstrdqpmlfgkfaqlIQEKEIEIDRLNEQFIKLQ---QQLKLTTDNkVIEEQKEQIQDLETQIERLMSEREHEK 2284
Cdd:TIGR02168 904 RELESK---------------RSELRRELEELREKLAQLElrlEGLEVRIDN-LQERLSEEYSLTLEEAEALENKIEDDE 967
|
330
....*....|....*..
gi 125661048 2285 KQREEEVEQLTGVVEKL 2301
Cdd:TIGR02168 968 EEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1780-2377 |
4.99e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 4.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1780 ENEELMLNISSRLQAAVEKLLE---AISETNTQLEHAKVTQTELMRESFR---QKQEATESLHCLEELRERLQEES---- 1849
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEElrlEVSELEEEIEELQKELYALANEISRleqQKQILRERLANLERQLEELEAQLeele 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1850 RAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEA 1929
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1930 GPVE---QQFLQETEKLMKEKLEVQcqAEKVRGDLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEK 2006
Cdd:TIGR02168 410 ERLEdrrERLQQEIEELLKKLEEAE--LKELQAELEELEEELE-ELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2007 MRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEH-------------------QAREVEQLT------NHLK 2061
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvdegyeaaieaalggrlQAVVVENLNaakkaiAFLK 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2062 EKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKV------------------EDQKRSGA--- 2120
Cdd:TIGR02168 567 QNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnalELAKKLRPgyr 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2121 -VEADPELSLEVQLQVERDATDR-----KQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENR 2194
Cdd:TIGR02168 647 iVTLDGDLVRPGGVITGGSAKTNssileRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2195 LFKDEIEKLGFAMKESDSVSTRDQpMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQL-KLTTDNKVIEEQKEQIQDLETQI 2273
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIA-QLSKELTELEAEIEELEERLEEAEEELAEAEaEIEELEAQIEQLKEELKALREAL 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2274 ERLMSE------REHEKKQR-----------EEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESfkhQLDKVTAEK 2336
Cdd:TIGR02168 806 DELRAEltllneEAANLRERleslerriaatERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES---ELEALLNER 882
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 125661048 2337 LVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2377
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1938-2314 |
6.16e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 6.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1938 QETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEeQVSRFIEL-EQEKNAELTDLRQQSQALEKQLEKmrkfLDEQAI 2016
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAE-KAERYKELkAELRELELALLVLRLEELREELEE----LQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2017 DREHERDVFQQEIQKLEHQLKAVPRIQPVSEhqaREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVR 2096
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELE---EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2097 ELEQALLASAEPFPKVEDQKrsgaveadpeLSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLE 2176
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKL----------EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2177 IQRKEST---TRLQELQQENRLFKDEIEKLGFAMKESDsvstrdqpmlFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLt 2253
Cdd:TIGR02168 397 SLNNEIErleARLERLEDRRERLQQEIEELLKKLEEAE----------LKELQAELEELEEELEELQEELERLEEALEE- 465
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 125661048 2254 tdnkvIEEQKEQIQdletQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREG 2314
Cdd:TIGR02168 466 -----LREELEEAE----QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
129-954 |
1.03e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.72 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 129 EKELAEKQHDIEELTQELEemrasfGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQI 208
Cdd:TIGR02169 206 EREKAERYQALLKEKREYE------GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 209 QFQHLQANETLQ-NSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEmekdrkienlnaKEIQE 287
Cdd:TIGR02169 280 KIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE------------REIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 288 KQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEEL-- 365
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLna 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 366 ------QKRNLKDSWLETSAVRRVEQEtqRKLSHLQAELDEmYGKQIVQMKQELinqhmSQIEELKSQHKREMEntlKSD 439
Cdd:TIGR02169 428 aiagieAKINELEEEKEDKALEIKKQE--WKLEQLAADLSK-YEQELYDLKEEY-----DRVEKELSKLQRELA---EAE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 440 TNAAISKEQVNLMNAAINELNVRLQETHAqkeeLKGELGVVlGEK--SALQSQSNDLLEEVRFLREQVQKARQTIAEQEN 517
Cdd:TIGR02169 497 AQARASEERVRGGRAVEEVLKASIQGVHG----TVAQLGSV-GERyaTAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRK 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 518 rlsEARKSLSTVEDLKAEivaasesRKELELKHEAEITNYKIKL-EMLEKEKNA---------VLDRMAESQ-------- 579
Cdd:TIGR02169 572 ---AGRATFLPLNKMRDE-------RRDLSILSEDGVIGFAVDLvEFDPKYEPAfkyvfgdtlVVEDIEAARrlmgkyrm 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 580 ---EAEL-----------ERLRTQLLFSHEEElsklKEDLEVEHRinIEKLKDNLGIhYKQQIDGLQNEMNRKMESMQCE 645
Cdd:TIGR02169 642 vtlEGELfeksgamtggsRAPRGGILFSRSEP----AELQRLRER--LEGLKRELSS-LQSELRRIENRLDELSQELSDA 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 646 TDNLITQQNQLILENSKLRDLQECLVNSKSeemnlQINELQKEIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKED 725
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEE-----DLSSLEQEIENVKSELKE---LEARIEELEEDLHKLEEALNDLEA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 726 DL-QEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQE---ERSIAVDPSTSKSADSR-WQKEVAMLRKETEDLQQQCLYL 800
Cdd:TIGR02169 787 RLsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRltlEKEYLEKEIQELQEQRIdLKEQIKSIEKEIENLNGKKEEL 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 801 NEEIEKQRNtfafAEKNFEVNYQELQREytcllkiRDDLEAtqtkQALEYESKLRALEEELLSKRGNPAAPKGKSSGIFp 880
Cdd:TIGR02169 867 EEELEELEA----ALRDLESRLGDLKKE-------RDELEA----QLRELERKIEELEAQIEKKRKRLSELKAKLEALE- 930
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 881 SETLEIGEVVEKDTTELMEK--LEVTKREKLELSEKVSGLS-------EQLKQTHCTINSLSAEVRALKQEKEQLLLRCG 951
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIE 1010
|
...
gi 125661048 952 ELE 954
Cdd:TIGR02169 1011 EYE 1013
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
128-749 |
1.13e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 128 VEKELAEKQHDIEELTQELEEMRasfgteglKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQ 207
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLE--------QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 208 IQFQHLQA-----NETLQNST---------LSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEK 273
Cdd:TIGR02168 351 EELESLEAeleelEAELEELEsrleeleeqLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 274 DRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKlelgNSQQNERKCSE 353
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE----RLQENLEGFSE 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 354 EIKELMrtveeLQKRNLKDSWLETSAVRRVEQETQRKL-----SHLQA---ELDEMYGKQIVQMKQELINQHM----SQI 421
Cdd:TIGR02168 507 GVKALL-----KNQSGLSGILGVLSELISVDEGYEAAIeaalgGRLQAvvvENLNAAKKAIAFLKQNELGRVTflplDSI 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 422 EELKSQhKREMENTLKSDTNAAISKEQVNLMNAAINELNVRL----------QETHAQKEELKGELGVVL-GE---KSAL 487
Cdd:TIGR02168 582 KGTEIQ-GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddldNALELAKKLRPGYRIVTLdGDlvrPGGV 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 488 QSQSNDLLEEVRFLREQ-VQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEK 566
Cdd:TIGR02168 661 ITGGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 567 EKNAVLDRMAESQE--AELERLRTQLLFSHEEELSKLKEDLEVEHRIN--IEKLKDNLGIhYKQQIDGLQNEMNRKMESM 642
Cdd:TIGR02168 741 EVEQLEERIAQLSKelTELEAEIEELEERLEEAEEELAEAEAEIEELEaqIEQLKEELKA-LREALDELRAELTLLNEEA 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 643 QCETDNLITQQNQLILENSKLRDLQECLVNSKS--EEMNLQINELQKEIEILKQE----EKEKGTLEQEVQELQLKTEQL 716
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEdiESLAAEIEELEELIEELESElealLNERASLEEALALLRSELEEL 899
|
650 660 670
....*....|....*....|....*....|...
gi 125661048 717 EKQLKEKEDDLQEKCAQLDAENNILKEEKRVLE 749
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLE 932
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1791-2305 |
1.99e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 1.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1791 RLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYS 1870
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1871 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQfLQETEKLMKEKLEV 1950
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA-LAELEEEEEEEEEA 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1951 QCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQ 2030
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2031 KLEHQLKAVP-------------RIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRE 2097
Cdd:COG1196 524 GAVAVLIGVEaayeaaleaalaaALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2098 LEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEI 2177
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2178 QRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLfgkfAQLIQEKEIEIDRLNEQFIKLQQQLKLT-TDN 2256
Cdd:COG1196 684 LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE----EQLEAEREELLEELLEEEELLEEEALEElPEP 759
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 125661048 2257 KVIEEQKEQIQDLETQIERL-----MSEREHE---------KKQR---EEEVEQLTGVVEKLQQEV 2305
Cdd:COG1196 760 PDLEELERELERLEREIEALgpvnlLAIEEYEeleerydflSEQRedlEEARETLEEAIEEIDRET 825
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
110-916 |
2.76e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.64 E-value: 2.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 110 DDSSSEQGAQSSQTCLQMVEKELAEKQHDIEElTQELEEMRASFGTEGLKQLQEFEAAIKQRDgiitqlTANLQQARREK 189
Cdd:PTZ00121 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEA-ARKAEEVRKAEELRKAEDARKAEAARKAEE------ERKAEEARKAE 1221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 190 DDTMVEFLELTEQSQKlqiQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRaf 269
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKK---DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAK-- 1296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 270 EMEKDRKIENLNAKEIQEKQAliDELNTRVVEEEKKTVELKNKV---TTADELLGGLHEQLTQRNQEIQSLKLELGNSQQ 346
Cdd:PTZ00121 1297 KAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKKADAAKKKAeeaKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 347 NERKCSEEIK---ELMRTVEELQKRNLKDSwLETSAVRRVEQEtQRKLSHLQAELDEMygKQIVQMKQELINQHMSQIEE 423
Cdd:PTZ00121 1375 EAKKKADAAKkkaEEKKKADEAKKKAEEDK-KKADELKKAAAA-KKKADEAKKKAEEK--KKADEAKKKAEEAKKADEAK 1450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 424 LKSQHKREMENTLKSDTNAAISKEQVNLMNAA--INELNVRLQETHAQKEELKGelgvvlgeksalQSQSNDLLEEVRFL 501
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAkkADEAKKKAEEAKKKADEAKK------------AAEAKKKADEAKKA 1518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 502 REQVQKARQTIAEQENRLSEARKSlstVEDLKAEIVAASESRKELELKHEAEitnykiKLEMLEKEKNAVLDRMAESQEA 581
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKA---EEKKKADELKKAEELKKAEEKKKAE------EAKKAEEDKNMALRKAEEAKKA 1589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 582 ELERLRTQLLFSHEEELSKLKE-DLEVEHRINIEKLKDNLGIHYK-QQIDGLQNEMNRKMESMQCETDNLITQQNQLILE 659
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAEEaKKAEEAKIKAEELKKAEEEKKKvEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 660 NSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEkcaqldaenn 739
Cdd:PTZ00121 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA---------- 1739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 740 ilKEEKRVLEDKLKmyspSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEiEKQRNTFAfaekNFE 819
Cdd:PTZ00121 1740 --EEDKKKAEEAKK----DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD-KKIKDIFD----NFA 1808
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 820 vNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSKRGNPAAPKGKSSGI---FPSETleigEVVEKDTTE 896
Cdd:PTZ00121 1809 -NIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKeadFNKEK----DLKEDDEEE 1883
|
810 820
....*....|....*....|
gi 125661048 897 LMEKLEVTKREKLELSEKVS 916
Cdd:PTZ00121 1884 IEEADEIEKIDKDDIEREIP 1903
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1791-2304 |
7.94e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 7.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1791 RLQAAVEKLLEAISETNTQLEHAKVTQTELMRES-------FRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAE 1863
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELeeaqaeeYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1864 SVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGpVEQQFLQETEKL 1943
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA-ELAAQLEELEEA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1944 MKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIEL---EQEKNAELTDLRQQSQALEKQLEKMRKFLDE--QAIDR 2018
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAaeeEAELEEEEEALLELLAELLEEAALLEAALAEllEELAE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2019 EHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLecRVREL 2098
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA--AIEYL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2099 EQALLASAEPFPKVEDQKRSGAVEADPELSLE---VQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQL 2175
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGaavDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2176 EIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTD 2255
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 125661048 2256 NKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQE 2304
Cdd:COG1196 727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
112-859 |
8.73e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.64 E-value: 8.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 112 SSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDD 191
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 192 TMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEM 271
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 272 EKDRKIEnlnakEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKC 351
Cdd:TIGR02169 407 ELDRLQE-----ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 352 SEEIKELMRTVEEL--QKRNLKDSWLETSAVRRVEQETQRKLSHLQAEL---DEMYGKQI----------VQMKQELINQ 416
Cdd:TIGR02169 482 EKELSKLQRELAEAeaQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvGERYATAIevaagnrlnnVVVEDDAVAK 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 417 hmSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELnVRLQETHAQKEE------------------------ 472
Cdd:TIGR02169 562 --EAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFA-VDLVEFDPKYEPafkyvfgdtlvvedieaarrlmgk 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 473 -----LKGEL----GVVLG---EKSALQSQSNDLLEEVRFLREQVQK-------ARQTIAEQENRLSEARKSLStveDLK 533
Cdd:TIGR02169 639 yrmvtLEGELfeksGAMTGgsrAPRGGILFSRSEPAELQRLRERLEGlkrelssLQSELRRIENRLDELSQELS---DAS 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 534 AEIVAASESRKELELKHEA---EITNYKIKLEMLEKEKNAVLDRMAESqEAELERLrtqllfshEEELSKLKEDLevehr 610
Cdd:TIGR02169 716 RKIGEIEKEIEQLEQEEEKlkeRLEELEEDLSSLEQEIENVKSELKEL-EARIEEL--------EEDLHKLEEAL----- 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 611 iniEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNsKSEEMNLQINELQKEIE 690
Cdd:TIGR02169 782 ---NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE-QRIDLKEQIKSIEKEIE 857
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 691 ILKqeeKEKGTLEQEVQELQLKTEQLEKQLKekedDLQEKCAQLDAENNILKEEKRVLE---DKLKMYSPSEQEERSIAV 767
Cdd:TIGR02169 858 NLN---GKKEELEEELEELEAALRDLESRLG----DLKKERDELEAQLRELERKIEELEaqiEKKRKRLSELKAKLEALE 930
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 768 DPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRntfafaeknfEVNYQELQrEYTCLLKIRDDLEATQTKQA 847
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE----------PVNMLAIQ-EYEEVLKRLDELKEKRAKLE 999
|
810
....*....|..
gi 125661048 848 LEYESKLRALEE 859
Cdd:TIGR02169 1000 EERKAILERIEE 1011
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
174-842 |
1.40e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 174 IITQLTANLQQARREKDDTMvEFLELTEQSQKLQIQ-----FQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDY 248
Cdd:COG1196 194 ILGELERQLEPLERQAEKAE-RYRELKEELKELEAEllllkLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 249 QKKEEDLQAQISFLQEKLRAFEMEKDR--KIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQ 326
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARleQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 327 LTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQI 406
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 407 VQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQV-NLMNAAINELNVRLQETHAQKEELKGELGVVLGEKS 485
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLeAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 486 ALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRkelelkheaeitnykiklemLE 565
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK--------------------AG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 566 KEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLKDNLgihykqqiDGLQNEMNRKMESMQCE 645
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL--------VAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 646 TDNLITQQNQLILENSKLRDLQEclvNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKED 725
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLTGGSR---RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 726 DLQEKCAQLDAENNILKEEkrvLEDKLKMYSPSEQEERSIAVDPSTsksadsrWQKEVAMLRKETEDLQqqclylneeie 805
Cdd:COG1196 722 EEEALEEQLEAEREELLEE---LLEEEELLEEEALEELPEPPDLEE-------LERELERLEREIEALG----------- 780
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 125661048 806 kqrntfafaeknfEVN------YQELQREYTCLLKIRDDLEAT 842
Cdd:COG1196 781 -------------PVNllaieeYEELEERYDFLSEQREDLEEA 810
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1791-2303 |
7.48e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.53 E-value: 7.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1791 RLQAAVEKLLEAISETNTQLEHAKVTQTEL--MRESFRQKQEATESLhcleelrerlqeesrareqlAEELNKAESVIDG 1868
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEAdeVLEEHEERREELETL--------------------EAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1869 YSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMR---AEAGPVEQQFLQETEKLMK 1945
Cdd:PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRdrlEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1946 EKLEVQCQAEKVR---GDLQKQVKALEIDVEEQVSRFIELEqeknAELTDLRQQSQALEKQLEKMRKFLDEqaidREHER 2022
Cdd:PRK02224 350 DADDLEERAEELReeaAELESELEEAREAVEDRREEIEELE----EEIEELRERFGDAPVDLGNAEDFLEE----LREER 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2023 DVFQQEIQKLEHQLKAVpriqpvsEHQAREVEQLtnhLKE-KTDRCSELLLSKEQLQRdIQERNEEIEKLECRVRELEQA 2101
Cdd:PRK02224 422 DELREREAELEATLRTA-------RERVEEAEAL---LEAgKCPECGQPVEGSPHVET-IEEDRERVEELEAELEDLEEE 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2102 LLASAEPFPKVEDqkrsgAVEAdpelslEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKE 2181
Cdd:PRK02224 491 VEEVEERLERAED-----LVEA------EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2182 STTRLQELQQENRLFKDEIEKLGFAMKESDSVST-RDQpmlfgkfAQLIQEKEIEIDRLNEQFIKLQ------------- 2247
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSKLAELKERIESLERiRTL-------LAAIADAEDEIERLREKREALAelnderrerlaek 632
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2248 ----QQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQ 2303
Cdd:PRK02224 633 rerkRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE 692
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1899-2302 |
1.14e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.17 E-value: 1.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1899 NRLQELESDQRRVEEERQLLCRQREAMRAEAGPVeQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSR 1978
Cdd:TIGR02169 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1979 FIELE---QEKNAELTDLRQQSQALEKQLEKMRKFLDE-QAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVE 2054
Cdd:TIGR02169 739 LEELEedlSSLEQEIENVKSELKELEARIEELEEDLHKlEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2055 QLTNhlkektdrcsELLLSKEQLQRDIQERNEEIEKLECRVRELEQALlasaepfpkVEDQKRSGAVEADPElslEVQLQ 2134
Cdd:TIGR02169 819 QKLN----------RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI---------ENLNGKKEELEEELE---ELEAA 876
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2135 VeRDATDRK---QKEITNLEEQLEqfreELENKNDEVQELLMQLEIQRKESTTRLQELQQENrlfkDEIEKLGFAMKESD 2211
Cdd:TIGR02169 877 L-RDLESRLgdlKKERDELEAQLR----ELERKIEELEAQIEKKRKRLSELKAKLEALEEEL----SEIEDPKGEDEEIP 947
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2212 SvstrdQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLklttdnkviEEQKEQIQDLETQIERLMSER--------EHE 2283
Cdd:TIGR02169 948 E-----EELSLEDVQAELQRVEEEIRALEPVNMLAIQEY---------EEVLKRLDELKEKRAKLEEERkailerieEYE 1013
|
410
....*....|....*....
gi 125661048 2284 KKQREEEVEQLTGVVEKLQ 2302
Cdd:TIGR02169 1014 KKKREVFMEAFEAINENFN 1032
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
419-956 |
1.31e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 419 SQIEELKSQHKREMENTLKSdtnaaiskeqvnlmnaaINELNVRLQETHAQKEEL---KGELGVVLGEKSALQSQSNDLL 495
Cdd:PRK03918 189 ENIEELIKEKEKELEEVLRE-----------------INEISSELPELREELEKLekeVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 496 EEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELElKHEAEITNYKIKLEMLEKEKNAVLDRM 575
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 576 --AESQEAELERLRtQLLFSHEEELSKLKEDLEVEHRI-----NIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDN 648
Cdd:PRK03918 331 keLEEKEERLEELK-KKLKELEKRLEELEERHELYEEAkakkeELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 649 LITQQNQLILENSKLRDLQECLVNSKSE--EMNLQINELQKEiEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDD 726
Cdd:PRK03918 410 ITARIGELKKEIKELKKAIEELKKAKGKcpVCGRELTEEHRK-ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKV 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 727 LqEKCAQLDAENNILkEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQ--------KEVAMLRKETEDLQQQCL 798
Cdd:PRK03918 489 L-KKESELIKLKELA-EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEikslkkelEKLEELKKKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 799 YLNEE---IEKQRNTFAF-AEKNFEVNYQELQ---REYTCLLKIRDDLEATQTKQALEyESKLRALEEELlskrgnpaap 871
Cdd:PRK03918 567 ELEEElaeLLKELEELGFeSVEELEERLKELEpfyNEYLELKDAEKELEREEKELKKL-EEELDKAFEEL---------- 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 872 kGKSSGIFPSETLEIGEVVEKDTTELMEKLEvtkREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCG 951
Cdd:PRK03918 636 -AETEKRLEELRKELEELEKKYSEEEYEELR---EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK 711
|
....*
gi 125661048 952 ELELL 956
Cdd:PRK03918 712 ELEKL 716
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1850-2344 |
1.36e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1850 RAREQLAEELNKAESV---IDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERqllcRQREAMR 1926
Cdd:PRK03918 176 RRIERLEKFIKRTENIeelIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE----KELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1927 AEAGPVEQQfLQETEKLMKEKLEVQCQAEKVRGDLQK-QVKALE-IDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQL 2004
Cdd:PRK03918 252 GSKRKLEEK-IRELEERIEELKKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2005 EKMRKfLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELL-LSKEQLQRDIQE 2083
Cdd:PRK03918 331 KELEE-KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELeKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2084 RNEEIEKLECRVRELEQAL--LASAEP----------------------------------FPKVEDQKRSGAVEADPEL 2127
Cdd:PRK03918 410 ITARIGELKKEIKELKKAIeeLKKAKGkcpvcgrelteehrkelleeytaelkriekelkeIEEKERKLRKELRELEKVL 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2128 SLEVQLQVERDATDrkqkEITNLEEQLEQFR-EELENKNDEVQEL--------------------LMQLEIQRKESTTRL 2186
Cdd:PRK03918 490 KKESELIKLKELAE----QLKELEEKLKKYNlEELEKKAEEYEKLkekliklkgeikslkkelekLEELKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2187 QELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQL------IQEKEIEIDRLNEQFIKLQQQLKLTtdNKVIE 2260
Cdd:PRK03918 566 DELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELkdaekeLEREEKELKKLEEELDKAFEELAET--EKRLE 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2261 EQKEQIQDLetqiERLMSEREHEKKqrEEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLE 2340
Cdd:PRK03918 644 ELRKELEEL----EKKYSEEEYEEL--REEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717
|
....
gi 125661048 2341 QQVE 2344
Cdd:PRK03918 718 KALE 721
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1779-2322 |
1.71e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.40 E-value: 1.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1779 PENEELMLNISSRLQAaVEKLLEAISETNTQLE---------HAKVTQTELMRESFRQKQEATES----LHCLEELRERL 1845
Cdd:PRK03918 217 PELREELEKLEKEVKE-LEELKEEIEELEKELEslegskrklEEKIRELEERIEELKKEIEELEEkvkeLKELKEKAEEY 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1846 QEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQE---KTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQR 1922
Cdd:PRK03918 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEleeKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1923 EAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKV---RGDLQKQVKALEIDVEEQVS---------RFIELEQEKN--- 1987
Cdd:PRK03918 376 RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKItarIGELKKEIKELKKAIEELKKakgkcpvcgRELTEEHRKElle 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1988 ---AELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEiqKLEHQLKAVPriQPVSEHQAREVEQLTnhlkEKT 2064
Cdd:PRK03918 456 eytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK--ELAEQLKELE--EKLKKYNLEELEKKA----EEY 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2065 DRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQ-----------L 2133
Cdd:PRK03918 528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKelepfyneyleL 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2134 QVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQL-EIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDS 2212
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELeELEKKYSEEEYEELREEYLELSRELAGLRAELEELEK 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2213 vstrdqpmlfgkfaqLIQEKEIEIDRLNEQFiklqqqlklttdnKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVE 2292
Cdd:PRK03918 688 ---------------RREEIKKTLEKLKEEL-------------EEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
570 580 590
....*....|....*....|....*....|..
gi 125661048 2293 QLTGVVEKLQQEVVS--TEQQREGARTLPEDE 2322
Cdd:PRK03918 740 RALSKVGEIASEIFEelTEGKYSGVRVKAEEN 771
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3008-3343 |
1.92e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 1.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3008 EMQLELSSLRDRAAELQEQLSS--------EKmvVAELKSELAQAKLELG-----------TTLKAQHKRLK-ELEAFRS 3067
Cdd:COG1196 183 ATEENLERLEDILGELERQLEPlerqaekaER--YRELKEELKELEAELLllklreleaelEELEAELEELEaELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3068 EVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQ 3147
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3148 QKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDggqpppalpsedlLKELQKQLEE 3227
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE-------------LAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3228 KHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGK 3307
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
330 340 350
....*....|....*....|....*....|....*.
gi 125661048 3308 RLQGLMQEFQKQELEPEEKPGSRGLVDQNLNEPATW 3343
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1820-2194 |
2.61e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.02 E-value: 2.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1820 LMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAesvidgysdektlferqiqektdiiehleqevlcmNN 1899
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL-----------------------------------KE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1900 RLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLmkEKLEVQCQAEKVRgDLQKQVKALEIDVEEQVSRF 1979
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL--NDLEARLSHSRIP-EIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1980 IELEQEKNAEltdlrqqsQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIqpVSEHQArEVEQLTNH 2059
Cdd:TIGR02169 815 REIEQKLNRL--------TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE--LEELEA-ALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2060 LKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEvQLQVERda 2139
Cdd:TIGR02169 884 LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE-DVQAEL-- 960
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 125661048 2140 tDRKQKEITNLEE---QLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENR 2194
Cdd:TIGR02169 961 -QRVEEEIRALEPvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
91-827 |
3.09e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.53 E-value: 3.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 91 SEISTTADECSSEEEEFSLDDSSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQ 170
Cdd:pfam02463 289 KLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 171 RDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQK 250
Cdd:pfam02463 369 EQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 251 KEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEI--QEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLT 328
Cdd:pfam02463 449 EKEELEKQELKLLKDELELKKSEDLLKETQLVKLQeqLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAH 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 329 QRNQEIQSLKLELGNsqQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQ 408
Cdd:pfam02463 529 GRLGDLGVAVENYKV--AISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLA 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 409 MKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLgEKSALQ 488
Cdd:pfam02463 607 QLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQ-ELQEKA 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 489 SQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSL----STVEDLKAEIVAASESRKELELKHEAEITNYKIKLEML 564
Cdd:pfam02463 686 ESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLadrvQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 565 EKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLK-DNLGIHYKQQIDGLQNEMNRKMESMQ 643
Cdd:pfam02463 766 KSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEeEQLLIEQEEKIKEEELEELALELKEE 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 644 CETDNLITQQNQLILENSKLRDLqeclvNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEK 723
Cdd:pfam02463 846 QKLEKLAEEELERLEEEITKEEL-----LQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE 920
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 724 EDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSAdsrwQKEVAMLRKETEDLQQQclYLNEE 803
Cdd:pfam02463 921 ERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEEL----GKVNLMAIEEFEEKEER--YNKDE 994
|
730 740
....*....|....*....|....
gi 125661048 804 IEKQRNTFAFAEKNFEVNYQELQR 827
Cdd:pfam02463 995 LEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
237-753 |
6.01e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.43 E-value: 6.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 237 QIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRK---IENLNAKEIQEKQAL--IDELNTRVVEEEKKTVELKN 311
Cdd:TIGR04523 146 EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIqknIDKIKNKLLKLELLLsnLKKKIQKNKSLESQISELKK 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 312 KVTTadellggLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELmrtveelqKRNLKDSWLETSAVRRVEQETQRKL 391
Cdd:TIGR04523 226 QNNQ-------LKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI--------KKQLSEKQKELEQNNKKIKELEKQL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 392 SHLQAELDEMYGkqivQMKQELINQHMSQIEELKSQhKREMENTLkSDTNAAIS--KEQVNLMNAAINELNVRLQETHAQ 469
Cdd:TIGR04523 291 NQLKSEISDLNN----QKEQDWNKELKSELKNQEKK-LEEIQNQI-SQNNKIISqlNEQISQLKKELTNSESENSEKQRE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 470 KEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVE----DLKAEIVAASESRKE 545
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEkeieRLKETIIKNNSEIKD 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 546 LElkheAEITNYKIKLEMLEKEKnavldrmaESQEAELERLrtqllfshEEELSKLKEDLEVEHRINIEKLKDNLGI-HY 624
Cdd:TIGR04523 445 LT----NQDSVKELIIKNLDNTR--------ESLETQLKVL--------SRSINKIKQNLEQKQKELKSKEKELKKLnEE 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 625 KQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRD-LQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLE 703
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDeLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQ 584
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 125661048 704 QEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLK 753
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
250-955 |
6.67e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.52 E-value: 6.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 250 KKEEDLQAQISFLQEKLRAFEMEKDrKIENLNAKEIQEKQALIDELNTRVVEEEK----KTVELKNKVTTADELLGGL-- 323
Cdd:pfam15921 103 KQKFYLRQSVIDLQTKLQEMQMERD-AMADIRRRESQSQEDLRNQLQNTVHELEAakclKEDMLEDSNTQIEQLRKMMls 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 324 HEQLTQrnqEIQSLKLELgnsqqnERKCSEEIKElMRTVEELQKRNLKdswletSAVRRVEQETQRKLSHLQAEL----D 399
Cdd:pfam15921 182 HEGVLQ---EIRSILVDF------EEASGKKIYE-HDSMSTMHFRSLG------SAISKILRELDTEISYLKGRIfpveD 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 400 EMYG-KQIVQMKQELI-NQHMSQIEELKSQHKREMENTLKSDTNA-----------AISKEQVNLMNA-----------A 455
Cdd:pfam15921 246 QLEAlKSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSArsqansiqsqlEIIQEQARNQNSmymrqlsdlesT 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 456 INELNVRLQET----HAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVED 531
Cdd:pfam15921 326 VSQLRSELREAkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWD 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 532 LK-AEIVAASESRKELELKHeAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLR-----TQLLFSHEEELSKLKEDL 605
Cdd:pfam15921 406 RDtGNSITIDHLRRELDDRN-MEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEkvsslTAQLESTKEMLRKVVEEL 484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 606 EVEhRINIEKLKDNLgihykQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSE--EMNLQIN 683
Cdd:pfam15921 485 TAK-KMTLESSERTV-----SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEceALKLQMA 558
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 684 ELQKEIEILKQEEKEK----GTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKE-EKRVLE---DKLKMY 755
Cdd:pfam15921 559 EKDKVIEILRQQIENMtqlvGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRElEARVSDlelEKVKLV 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 756 SPSEQEERSIavdpstsksadsrwqkevamlrketEDLQQQCLYLNEEIEKQRNTFafaeKNFEVNYQELQREYTcllKI 835
Cdd:pfam15921 639 NAGSERLRAV-------------------------KDIKQERDQLLNEVKTSRNEL----NSLSEDYEVLKRNFR---NK 686
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 836 RDDLEATQTKQALEYESKLRALEEE---LLSKRGNPAAPKGKSSGIFPSETLEIGEV--VEKDTTELMEKLEVTKREKLE 910
Cdd:pfam15921 687 SEEMETTTNKLKMQLKSAQSELEQTrntLKSMEGSDGHAMKVAMGMQKQITAKRGQIdaLQSKIQFLEEAMTNANKEKHF 766
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 125661048 911 LSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELEL 955
Cdd:pfam15921 767 LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEV 811
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
111-507 |
1.25e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 1.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 111 DSSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRasfgteglKQLQEFEAAIKQRDGIITQLTANLQQARREKD 190
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELR--------KELEELEEELEQLRKELEELSRQISALRKDLA 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 191 DTMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIftqqqqlqdyqkkeEDLQAQISFLQEKLRAFE 270
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI--------------EELEAQIEQLKEELKALR 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 271 mekdrkienlnaKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERK 350
Cdd:TIGR02168 803 ------------EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 351 CSEEIKELM--RTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGkQIVQMKQELINQHMSQIEELKSQH 428
Cdd:TIGR02168 871 LESELEALLneRASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA-QLELRLEGLEVRIDNLQERLSEEY 949
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 429 KREME----NTLKSDTNAAISKEQVNLMNAAINEL-NVRLqETHAQKEELKgelgvvlGEKSALQSQSNDLLEEVRFLRE 503
Cdd:TIGR02168 950 SLTLEeaeaLENKIEDDEEEARRRLKRLENKIKELgPVNL-AAIEEYEELK-------ERYDFLTAQKEDLTEAKETLEE 1021
|
....
gi 125661048 504 QVQK 507
Cdd:TIGR02168 1022 AIEE 1025
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1853-2331 |
1.29e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.27 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRL---QELESDQRRVEEERQLLCRQREAMRAEA 1929
Cdd:TIGR04523 155 EKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlKKKIQKNKSLESQISELKKQNNQLKDNI 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1930 GPVEQQFLQETEKLMKEKLEVQcQAEKVRGDLQKQVKALEIDVEEQVSRFIELE---QEKNAELTDLRQQSQA-LEKQLE 2005
Cdd:TIGR04523 235 EKKQQEINEKTTEISNTQTQLN-QLKDEQNKIKKQLSEKQKELEQNNKKIKELEkqlNQLKSEISDLNNQKEQdWNKELK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2006 KMRKFLDEQAIDREHERDVFQQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCselllskEQLQRDIQERN 2085
Cdd:TIGR04523 314 SELKNQEKKLEEIQNQISQNNKIISQLNEQIS---QLKKELTNSESENSEKQRELEEKQNEI-------EKLKKENQSYK 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2086 EEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpelSLEVQLQVERDATDRKQKEITNLEEQLEQFR---EELE 2162
Cdd:TIGR04523 384 QEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE---LLEKEIERLKETIIKNNSEIKDLTNQDSVKEliiKNLD 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2163 NKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESD---SVSTRDQPMLFGKFAQL---IQEKEIEI 2236
Cdd:TIGR04523 461 NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEekvKDLTKKISSLKEKIEKLeseKKEKESKI 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2237 DRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLE----------TQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVV 2306
Cdd:TIGR04523 541 SDLEDELNKDDFELKKENLEKEIDEKNKEIEELKqtqkslkkkqEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620
|
490 500
....*....|....*....|....*
gi 125661048 2307 STEQQREGARTLPEDEESFKHQLDK 2331
Cdd:TIGR04523 621 KAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
126-729 |
1.45e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 64.37 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 126 QMVEKELAEKQHDIEELTQELEEmrasfgTEGLKQLQEFEAaikqRDGIItQLTANLQQARREKDdTMVEFLELTEQSQ- 204
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNE------SNELHEKQKFYL----RQSVI-DLQTKLQEMQMERD-AMADIRRRESQSQe 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 205 ----KLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENL 280
Cdd:pfam15921 142 dlrnQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 281 NAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH----EQLTQRNQ-EIQSL--KLELGNSQQNERKCSE 353
Cdd:pfam15921 222 ISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHqdriEQLISEHEvEITGLteKASSARSQANSIQSQL 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 354 E-IKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDemygKQIVQMKQEL---------INQHMSQIEE 423
Cdd:pfam15921 302 EiIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELE----KQLVLANSELtearterdqFSQESGNLDD 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 424 -----LKSQHKREMENTLKSDTNAAI------SKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSN 492
Cdd:pfam15921 378 qlqklLADLHKREKELSLEKEQNKRLwdrdtgNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKN 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 493 DLLEEVRFLREQVQKARQTIAEQENRLSEARKSLS----TVEDLKAEI-------------VAASESRKELELKHEAEIT 555
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLEsserTVSDLTASLqekeraieatnaeITKLRSRVDLKLQELQHLK 537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 556 NYKIKLEMLEKEKNAVLDRMAESQEAeLERLR------TQLLFSHEEELSKLK-EDLEVEHRINIEKLKDNLGIHYKQQI 628
Cdd:pfam15921 538 NEGDHLRNVQTECEALKLQMAEKDKV-IEILRqqienmTQLVGQHGRTAGAMQvEKAQLEKEINDRRLELQEFKILKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 629 DGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNlQINELQKEIEILKQEEKEKGtleqevQE 708
Cdd:pfam15921 617 DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN-ELNSLSEDYEVLKRNFRNKS------EE 689
|
650 660
....*....|....*....|.
gi 125661048 709 LQLKTEQLEKQLKEKEDDLQE 729
Cdd:pfam15921 690 METTTNKLKMQLKSAQSELEQ 710
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
163-954 |
1.91e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.22 E-value: 1.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 163 EFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQhlQANETLQNSTLSRTATDLLQAKRQIFTQQ 242
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 243 QQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDR--KIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELL 320
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQvlKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 321 gGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSwletsavrRVEQETQRKLSHLQAELDE 400
Cdd:pfam02463 317 -KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKL--------EQLEEELLAKKKLESERLS 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 401 MYGKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVV 480
Cdd:pfam02463 388 SAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELEL 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 481 LGEKSALQSQSNDLLEEVRFLREQVQKARQ-TIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKI 559
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLLSRQKLEErSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIST 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 560 KLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSK--LKEDLEVEHRINIEKLKDNLGIHYKQQID------GL 631
Cdd:pfam02463 548 AVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKlpLKSIAVLEIDPILNLAQLDKATLEADEDDkrakvvEG 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 632 QNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQL 711
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQR 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 712 KTEQLEKQLKEKEDDLQEKC-AQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPStsksadsrwQKEVAMLRKET 790
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVqEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS---------ELSLKEKELAE 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 791 EDLQQQCLYLNEEIEKQRNtfafaEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSKRGNPAA 870
Cdd:pfam02463 779 EREKTEKLKVEEEKEEKLK-----AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 871 PKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRC 950
Cdd:pfam02463 854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKY 933
|
....
gi 125661048 951 GELE 954
Cdd:pfam02463 934 EEEP 937
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1955-2309 |
2.58e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 2.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1955 EKVRGDLQKqvkaleidVEEQVSRFIELEQEKnaeltdlRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEH 2034
Cdd:TIGR02169 173 EKALEELEE--------VEENIERLDLIIDEK-------RQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2035 QLKAvprIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEE--------IEKLECRVRELEQALLASA 2106
Cdd:TIGR02169 238 QKEA---IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrvkekIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2107 EPFPKVEDQKRSGAVEADPELS----LEVQLQVERDATDRKQKEITNLEEQLEQFR---EELENKNDEVQELLMQLEIQR 2179
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAeieeLEREIEEERKRRDKLTEEYAELKEELEDLRaelEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2180 KESTTRLQELQQENRLFKDEIEKLGFAMKESDSvstrDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQlklttdNKVI 2259
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNA----AIAGIEAKINELEEEKEDKALEIKKQEWKLEQL------AADL 464
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 125661048 2260 EEQKEQIQDLETQIERLmsEREHEKKQRE-EEVEQLTGVVEKLQQEVVSTE 2309
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRV--EKELSKLQRElAEAEAQARASEERVRGGRAVE 513
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2026-2346 |
3.68e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 3.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2026 QQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLAs 2105
Cdd:TIGR02169 680 RERLEGLKRELS---SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN- 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2106 aepfpkvedqkrsgaveadpelslevqlqvERDATDRKQKEITNLEEQLEQFREELEnkndevqellmqlEIQRKESTTR 2185
Cdd:TIGR02169 756 ------------------------------VKSELKELEARIEELEEDLHKLEEALN-------------DLEARLSHSR 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2186 LQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLfGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLttDNKVIEEQKEQ 2265
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-EYLEKEIQELQEQRIDLKEQIKSIEKEIEN--LNGKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2266 IQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVET 2345
Cdd:TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE 949
|
.
gi 125661048 2346 T 2346
Cdd:TIGR02169 950 E 950
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1557-2371 |
5.43e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 5.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1557 QQMERQREDQEQLQEEIKRLNEQLaqkSSIDTEHVVSERERVLLEELEALKQLPLAGRKELCCELRHSSTQTQDGHDDQE 1636
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELERQL---KSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1637 VEEQTLKDKTLERSPEdalldrnLSNERYALKKANNRLLKILLEVVKTTSAAEETIGRHV--LGILDRSSKGQTASSLLW 1714
Cdd:TIGR02168 256 EELTAELQELEEKLEE-------LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRerLANLERQLEELEAQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1715 RSEADASAttcapEDCARAMDESipsypGTAIATHDSIWSKVTEEGAELSQRLVRSGfagpvidpENEELMLnissRLQA 1794
Cdd:TIGR02168 329 ESKLDELA-----EELAELEEKL-----EELKEELESLEAELEELEAELEELESRLE--------ELEEQLE----TLRS 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1795 AVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATEslHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKT 1874
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1875 LFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEE----RQLLcRQREAMRAEAGPVEQQ--FLQETEKLMKEKL 1948
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegvKALL-KNQSGLSGILGVLSELisVDEGYEAAIEAAL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1949 EVQCQAEKVRgDLQKQVKALEIDVEEQVSR--FIELEQEKNAELTDLRQQSqalekqLEKMRKFLDeQAIDREHERDVFQ 2026
Cdd:TIGR02168 544 GGRLQAVVVE-NLNAAKKAIAFLKQNELGRvtFLPLDSIKGTEIQGNDREI------LKNIEGFLG-VAKDLVKFDPKLR 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2027 QEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKE------------KTDRCSELLLSKeqlQRDIQERNEEIEKLECR 2094
Cdd:TIGR02168 616 KALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgdlvrpggvitgGSAKTNSSILER---RREIEELEEKIEELEEK 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2095 VRELEQALLASAEPFPKVEDQKRSGAVEADpelSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQ 2174
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELE---ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2175 LEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRdqpmlfgkfaqlIQEKEIEIDRLNEQFIKLQQQLKLTT 2254
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE------------LTLLNEEAANLRERLESLERRIAATE 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2255 dnKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLtgvvEKLQQEVVSTEQQREGARtlpEDEESFKHQLDKVTA 2334
Cdd:TIGR02168 838 --RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL----EALLNERASLEEALALLR---SELEELSEELRELES 908
|
810 820 830
....*....|....*....|....*....|....*..
gi 125661048 2335 EKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSL 2371
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
385-1143 |
5.76e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 5.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 385 QETQRKLSHLQAELdemYGKQIVQMKQELiNQHMSQIEELKSQHKREmentlksdtnaaisKEQVNLMNAAINELNVRLQ 464
Cdd:TIGR02168 216 KELKAELRELELAL---LVLRLEELREEL-EELQEELKEAEEELEEL--------------TAELQELEEKLEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 465 ETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIvaasesrk 544
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL-------- 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 545 elelkhEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRtQLLFSHEEELSKLKEDLEvEHRINIEKLKDNLGIhY 624
Cdd:TIGR02168 350 ------KEELESLEAELEELEAELEELESRLEE-LEEQLETLR-SKVAQLELQIASLNNEIE-RLEARLERLEDRRER-L 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 625 KQQIDGLQNEMNRKmesmqcetdNLITQQNQLILENSKLRDLQECLvnsksEEMNLQINELQKEIEILKQEEKEkgtLEQ 704
Cdd:TIGR02168 420 QQEIEELLKKLEEA---------ELKELQAELEELEEELEELQEEL-----ERLEEALEELREELEEAEQALDA---AER 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 705 EVQELQLKTEQLEkQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKmyspseqeersiaVDPSTSKSADSRWQKEVA 784
Cdd:TIGR02168 483 ELAQLQARLDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS-------------VDEGYEAAIEAALGGRLQ 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 785 MLRKETEDLQQQCLYLNEEIEKQRNTF----AFAEKNFEVNYQELQREYTCLLKIRDDLEATQTK--------------- 845
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFLKQNELGRVTFlpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllggvlvv 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 846 ----QALEYESKLRA------LEEELLSKRG--NPAAPKGKSSGIFPS-------ETLEIGE-----------VVEKDTT 895
Cdd:TIGR02168 629 ddldNALELAKKLRPgyrivtLDGDLVRPGGviTGGSAKTNSSILERRreieeleEKIEELEekiaelekalaELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 896 ELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELELLANPSgTENAAVCPVQMSSY 975
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA-EEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 976 QAglvmgKVGDSGGSISKISKDLAEESKPMIEDKIPF-KESGREQLLLPTRAQKPSHATVEPCESEKLQQELHALKAEQD 1054
Cdd:TIGR02168 788 EA-----QIEQLKEELKALREALDELRAELTLLNEEAaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1055 DLRLQMEAQRICLfvvysTHADQVRAHME---KEREEALCSLKDELISAQQKKIDELHKMHQCQLQNFKIQETGDEpLQV 1131
Cdd:TIGR02168 863 ELEELIEELESEL-----EALLNERASLEealALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG-LEV 936
|
810
....*....|..
gi 125661048 1132 LIERLQQAVSEK 1143
Cdd:TIGR02168 937 RIDNLQERLSEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1528-2303 |
6.22e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 6.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1528 EQLEDMRQELVRQYEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRLNEQLAQKSSIDT--EHVVSERERVLLEELEA 1605
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQqkQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1606 LKQLPLAGRKElccelrhsstqtqdghDDQEVEEQTLKDKTLERSPEDALLDRNLSNERYALKKANNRLLKilLEVVKTT 1685
Cdd:TIGR02168 322 EAQLEELESKL----------------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE--LEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1686 SAAEetIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPEDCARAMDESIPSYPGTAIATHDSIWSKVTEEGAELSQ 1765
Cdd:TIGR02168 384 LRSK--VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1766 RLvrsgfagpvidpeneelmlnisSRLQAAVEKLLEAISETNTQLEH--AKVTQTELMRESFRQKQEATESLhcLEELRE 1843
Cdd:TIGR02168 462 AL----------------------EELREELEEAEQALDAAERELAQlqARLDSLERLQENLEGFSEGVKAL--LKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1844 RLQEESRAREQL--AEELNKAESVIDGYSDEKTLFERQiQEKTDIIEHLEQE----------VLCMNNRLQELESDQRRV 1911
Cdd:TIGR02168 518 LSGILGVLSELIsvDEGYEAAIEAALGGRLQAVVVENL-NAAKKAIAFLKQNelgrvtflplDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1912 EEERQLLCRQREAMRAEAGPVEQQFL----------QETEKLMKEKLE---VQCQAEKVR-------GDLQKQVKAL--- 1968
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddldNALELAKKLRPGyriVTLDGDLVRpggvitgGSAKTNSSILerr 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1969 -EI-DVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVS 2046
Cdd:TIGR02168 677 rEIeELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2047 EHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpe 2126
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA-- 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2127 lSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELL---MQLEIQRKESTTRLQELQQENRLFKDEIEKL 2203
Cdd:TIGR02168 835 -ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLnerASLEEALALLRSELEELSEELRELESKRSEL 913
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2204 GFAMKESDSvstrdqpmLFGKFAQLIQEKEIEIDRLNEQFIKLQQ-------QLKLTTDNKvIEEQKEQIQDLETQIERL 2276
Cdd:TIGR02168 914 RRELEELRE--------KLAQLELRLEGLEVRIDNLQERLSEEYSltleeaeALENKIEDD-EEEARRRLKRLENKIKEL 984
|
810 820 830
....*....|....*....|....*....|....*..
gi 125661048 2277 -------MSEREHEKKQREE---EVEQLTGVVEKLQQ 2303
Cdd:TIGR02168 985 gpvnlaaIEEYEELKERYDFltaQKEDLTEAKETLEE 1021
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1900-2346 |
9.87e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.85 E-value: 9.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1900 RLQELESDQRRVEEERQllcrQREAMRAEAGPVEQQFLQETEKLMKEKLEvQCQAEKVRgdLQKQVKALEIDVEEQVSRF 1979
Cdd:COG4913 253 LLEPIRELAERYAAARE----RLAELEYLRAALRLWFAQRRLELLEAELE-ELRAELAR--LEAELERLEARLDALREEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1980 IELEQEknaeltdLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRI-QPVSEHQAREVEQLTN 2058
Cdd:COG4913 326 DELEAQ-------IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEfAALRAEAAALLEALEE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2059 HLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRV-----------RELEQALLASAEPFP--------KVEDQKRSG 2119
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsniparllalrDALAEALGLDEAELPfvgelievRPEEERWRG 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2120 AVEA-----------DPE-----------LSLEVQLQVERDATDRKQKEITNLEEQ-----LE----QFREELEN----- 2163
Cdd:COG4913 479 AIERvlggfaltllvPPEhyaaalrwvnrLHLRGRLVYERVRTGLPDPERPRLDPDslagkLDfkphPFRAWLEAelgrr 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2164 ----KNDEVQELL-----MQLEIQRKESTTR----------------------LQELQQENRLFKDEIEKLGFAMKESDS 2212
Cdd:COG4913 559 fdyvCVDSPEELRrhpraITRAGQVKGNGTRhekddrrrirsryvlgfdnrakLAALEAELAELEEELAEAEERLEALEA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2213 V--STRDQPMLFGKFAQLiQEKEIEIDRLNEQFIKLQQQL-KLTTDNKVIEEQKEQIQDLETQIERLMSERE---HEKKQ 2286
Cdd:COG4913 639 EldALQERREALQRLAEY-SWDEIDVASAEREIAELEAELeRLDASSDDLAALEEQLEELEAELEELEEELDelkGEIGR 717
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 2287 REEEVEQLTGVVEKLQQEVVSTEQ--------------QREGARTLPED-EESFKHQLDKVTAEKLVLEQQVETT 2346
Cdd:COG4913 718 LEKELEQAEEELDELQDRLEAAEDlarlelralleerfAAALGDAVERElRENLEERIDALRARLNRAEEELERA 792
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2985-3322 |
1.28e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2985 REQGTEKSSQELLDCSMQQKQSLEMQLELSSLRDRAAELQEQlSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEA 3064
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK-AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3065 FRSEVKEKTDEIHflsdtLAREQKNSLELQWALEKEKARsghhegrEKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLN 3144
Cdd:PTZ00121 1516 KKAEEAKKADEAK-----KAEEAKKADEAKKAEEKKKAD-------ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3145 ESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREdggqpppalpSEDLLK--ELQ 3222
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE----------AEEKKKaeELK 1653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3223 KQLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANT--QGQKKMQELQSKVEELQRQLQEKRQQVY 3300
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaeELKKKEAEEKKKAEELKKAEEENKIKAE 1733
|
330 340
....*....|....*....|..
gi 125661048 3301 KLDLEGKRLQGLMQEFQKQELE 3322
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
307-806 |
1.31e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 307 VELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKR--NLKDSwletsavrrvE 384
Cdd:TIGR04523 22 VGYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQikDLNDK----------L 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 385 QETQRKLSHLQAELDEMygKQIVQMKQELINQHMSQIEELKSQHKREMENtlKSDTNAAISKEQVNLmnaaiNELNVRLQ 464
Cdd:TIGR04523 92 KKNKDKINKLNSDLSKI--NSEIKNDKEQKNKLEVELNKLEKQKKENKKN--IDKFLTEIKKKEKEL-----EKLNNKYN 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 465 ETHAQKEELKGELGVVLGEKS-------------------------------ALQSQSNDLLEEVRFLREQVQKARQTIA 513
Cdd:TIGR04523 163 DLKKQKEELENELNLLEKEKLniqknidkiknkllklelllsnlkkkiqknkSLESQISELKKQNNQLKDNIEKKQQEIN 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 514 EQENRLSEARKSLSTVEDLKAEIVAASEsRKELELKH--------EAEITNYKIKLEMLEKEKNAVLDRMA----ESQEA 581
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLS-EKQKELEQnnkkikelEKQLNQLKSEISDLNNQKEQDWNKELkselKNQEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 582 ELERLRTQLLFShEEELSKLKEDLEvehriNIEKLKDNLGIHyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENS 661
Cdd:TIGR04523 322 KLEEIQNQISQN-NKIISQLNEQIS-----QLKKELTNSESE-NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 662 KLrdlqeclvNSKSEEMNLQINELQKEIEILkqeEKEKGTLEQEVQELQLKTEQLEKQLKekedDLQEKCAQLDAENNIL 741
Cdd:TIGR04523 395 DL--------ESKIQNQEKLNQQKDEQIKKL---QQEKELLEKEIERLKETIIKNNSEIK----DLTNQDSVKELIIKNL 459
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 742 KEEKRVLEDKLKMYSPSEQEERSIAVDpsTSKSADSRwQKEVAMLRKETEDLQQQCLYLNEEIEK 806
Cdd:TIGR04523 460 DNTRESLETQLKVLSRSINKIKQNLEQ--KQKELKSK-EKELKKLNEEKKELEEKVKDLTKKISS 521
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
110-606 |
1.33e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 110 DDSSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRAsfgtEGLKQLQEFEAAIKQRDGIITQLtANLQQARREK 189
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE----ELEEAEEELEEAEAELAEAEEAL-LEAEAELAEA 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 190 DDTMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAF 269
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 270 EMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELgnsqqneR 349
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL-------I 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 350 KCSEEIKELMRTVEE--LQKRNLKDswlETSAVRRVEQETQRKLSHLQAE-LDEMYGKQIVQMKQELINQHMSQIEELKS 426
Cdd:COG1196 531 GVEAAYEAALEAALAaaLQNIVVED---DEVAAAAIEYLKAAKAGRATFLpLDKIRARAALAAALARGAIGAAVDLVASD 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 427 QHKREMENTLKSDTNAAISKEQVNLMNAainelNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQ 506
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAA-----LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 507 KARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERL 586
Cdd:COG1196 683 ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
490 500
....*....|....*....|
gi 125661048 587 RTQllfshEEELSKLKEDLE 606
Cdd:COG1196 763 EEL-----ERELERLEREIE 777
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1984-2203 |
1.34e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.16 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1984 QEKNAELTDLRQQSQALEKQLEKMRKfldeqaidrehERDVFQQEIQKLEHQLKAvpriqpvsehQAREVEQLTNHLKEK 2063
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKK-----------EEKALLKQLAALERRIAA----------LARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2064 TDRCSELLLSKEQLQRDIQERNEEIEKlecRVRELEQ-------ALLASAEPFPKV------------EDQKRSGAVEAD 2124
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAE---LLRALYRlgrqpplALLLSPEDFLDAvrrlqylkylapARREQAEELRAD 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 125661048 2125 PElslevQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKL 2203
Cdd:COG4942 159 LA-----ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
129-730 |
1.66e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 1.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 129 EKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAI---KQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQK 205
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENEL-NLLEKEKLNIQKNIdkiKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQ 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 206 LQIQFQHLQANETLQNSTLSRTATDLLQA-------KRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIE 278
Cdd:TIGR04523 230 LKDNIEKKQQEINEKTTEISNTQTQLNQLkdeqnkiKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 279 NLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGL-------HEQLTQRNQEIQSLKlelgnsQQNERKc 351
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSesensekQRELEEKQNEIEKLK------KENQSY- 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 352 SEEIKELmrtveELQKRNLKdswLETSAVRRVEQETQRKLSHLQAELDEMyGKQIVQMKQELINQHmSQIEELKSQhKRE 431
Cdd:TIGR04523 383 KQEIKNL-----ESQINDLE---SKIQNQEKLNQQKDEQIKKLQQEKELL-EKEIERLKETIIKNN-SEIKDLTNQ-DSV 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 432 MENTLKS-DTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQ 510
Cdd:TIGR04523 452 KELIIKNlDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 511 TIAEQENRLSEARKSLSTVED------LKAEIvaaSESRKELE-LKHE-----AEITNYKIKLEMLEKEKNAVLDRMAEs 578
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFelkkenLEKEI---DEKNKEIEeLKQTqkslkKKQEEKQELIDQKEKEKKDLIKEIEE- 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 579 qeaelerlRTQLLFSHEEELSKLKEDLE--VEHRINIEKLKDNLgihyKQQIDGLQNEMNRKMESmqceTDNLITQQNQL 656
Cdd:TIGR04523 608 --------KEKKISSLEKELEKAKKENEklSSIIKNIKSKKNKL----KQEVKQIKETIKEIRNK----WPEIIKKIKES 671
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 125661048 657 ILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKgtleqEVQELQLKTEQLEKQLKEKEDDLQEK 730
Cdd:TIGR04523 672 KTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYK-----EIEKELKKLDEFSKELENIIKNFNKK 740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2917-3236 |
1.79e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2917 LATFQTELTSLSTRDVDGLLNSLEQRIQEQgieyhtamdclqKADRRSLLAEIEDLRAQINGGKMTLEREQGTEKSSQEL 2996
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEEL------------EAELEELEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2997 LDCSMQQKQSLEMQLE-LSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDE 3075
Cdd:COG1196 290 EYELLAELARLEQDIArLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3076 ihflsdtLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKm 3155
Cdd:COG1196 370 -------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE- 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3156 lhdAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDGgqpppALPSEDLLKELQKQLEEKHSRIVEL 3235
Cdd:COG1196 442 ---EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE-----AAARLLLLLEAEADYEGFLEGVKAA 513
|
.
gi 125661048 3236 L 3236
Cdd:COG1196 514 L 514
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
264-861 |
1.81e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.85 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 264 EKLRAFEMEKDRKIENlNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADEL---LGGLHEQLTQRNQEIQSLKLE 340
Cdd:PRK03918 182 EKFIKRTENIEELIKE-KEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 341 LGNSQQNERKCSEEIKELMRTVEELQKrnLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGK-QIVQMKQELINQHMS 419
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKE--LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEiNGIEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 420 QIEELKSQhKREMENTLksdtnaAISKEQVNLMNaainelnvRLQETHAQKEELKGELGVVLGEKSalqsqsNDLLEEVR 499
Cdd:PRK03918 339 RLEELKKK-LKELEKRL------EELEERHELYE--------EAKAKKEELERLKKRLTGLTPEKL------EKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 500 FLREQVQKARQTIAEQENRLSEARKSLST-VEDLKAEIVAASESRKELELKHEAEITN-YKIKLEMLEKEKnAVLDRMAE 577
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELKKaIEELKKAKGKCPVCGRELTEEHRKELLEeYTAELKRIEKEL-KEIEEKER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 578 SQEAELERLRTQLlfSHEEELSKLKEDLEvehriNIEKLKDNLGIHYKQqidglqnEMNRKMEsmqcetdnlitqqnqli 657
Cdd:PRK03918 477 KLRKELRELEKVL--KKESELIKLKELAE-----QLKELEEKLKKYNLE-------ELEKKAE----------------- 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 658 lensklrdlqeclvnsKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAE 737
Cdd:PRK03918 526 ----------------EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEE 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 738 nniLKEEKRVLEDKLKMY-----SPSEQEERSIAVDPSTSKSADSR-----WQKEVAMLRKETEDLQQqcLYLNEEIEKQ 807
Cdd:PRK03918 590 ---LEERLKELEPFYNEYlelkdAEKELEREEKELKKLEEELDKAFeelaeTEKRLEELRKELEELEK--KYSEEEYEEL 664
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 125661048 808 RNtfafaeknfevNYQELQREYTCLLKIRDDLEatqtKQALEYESKLRALEEEL 861
Cdd:PRK03918 665 RE-----------EYLELSRELAGLRAELEELE----KRREEIKKTLEKLKEEL 703
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1853-2377 |
1.82e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 1.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNR-------LQELESDQRRVEEERQLLCRQREAM 1925
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKlkknkdkINKLNSDLSKINSEIKNDKEQKNKL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1926 RAEAGPVEQQFLQETEKLMKEKLEV---QCQAEKVRGDLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEK 2002
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIkkkEKELEKLNNKYNDLKKQKE-ELENELNLLEKEKLNIQKNIDKIKNKLLKLEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2003 QLEKMRKFLDEQaidreherDVFQQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQ 2082
Cdd:TIGR04523 202 LLSNLKKKIQKN--------KSLESQISELKKQNN---QLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2083 ERNEEIEKLECRVRELE---QALLASAEPFPKVEDQKRSGAVEADPElSLEVQLQVERDATDRKQKEITNLEEQLEQFRE 2159
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEkqlNQLKSEISDLNNQKEQDWNKELKSELK-NQEKKLEEIQNQISQNNKIISQLNEQISQLKK 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2160 ELENKNDEVQELLMQLEiqrkESTTRLQELQQENRLFKDEIEKLgfamkesdSVSTRDQPMLFGKFAQLIQEKEIEIDRL 2239
Cdd:TIGR04523 350 ELTNSESENSEKQRELE----EKQNEIEKLKKENQSYKQEIKNL--------ESQINDLESKIQNQEKLNQQKDEQIKKL 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2240 NEQFIKLQQQLKL-----TTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREE---EVEQLTGVVEKLQQEVVSTEQq 2311
Cdd:TIGR04523 418 QQEKELLEKEIERlketiIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVlsrSINKIKQNLEQKQKELKSKEK- 496
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 125661048 2312 regartlpedeesfkhQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2377
Cdd:TIGR04523 497 ----------------ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2949-3268 |
1.83e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2949 EYHTAMDCLQKADRRSLLAEIEDLRAQINGGKMTLEREQGTEKSSQELLDcsMQQKQSLEMQLELSSLRDRAAELQEQLS 3028
Cdd:COG1196 214 RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELA--ELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3029 SEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARsghhE 3108
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA----L 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3109 GREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKST 3188
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3189 LDKERELYAQLQSREdggqpppaLPSEDLLKELQKQLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQ 3268
Cdd:COG1196 448 AEEEAELEEEEEALL--------ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1791-2203 |
6.69e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 6.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1791 RLQAAVEKLLEAISETNTQLEHAKVTQTELmRESFRQKQEATESLhcleelrerLQEESRAREQLAEELNKAESVidgyS 1870
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEEL-EEELEQLRKELEEL---------SRQISALRKDLARLEAEVEQL----E 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1871 DEKTLFERQIQEKTDIIEHLEQevlcmnnRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKLEV 1950
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEE-------RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1951 QCQAEKVRGdlqkqvkaLEIDVEEQVSRFIELEQEKNaeltDLRQQSQALEKQLEKMRKFLDEQAIDREH---ERDVFQQ 2027
Cdd:TIGR02168 820 ANLRERLES--------LERRIAATERRLEDLEEQIE----ELSEDIESLAAEIEELEELIEELESELEAllnERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2028 EIQKLEHQLkavpriqpvsEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAE 2107
Cdd:TIGR02168 888 ALALLRSEL----------EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAE 957
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2108 PFPKvedqkrsgAVEADPElslEVQLQVERDATDRKQKEITNLE-----EQLEQFREELENKNDEVQELLMQLE--IQR- 2179
Cdd:TIGR02168 958 ALEN--------KIEDDEE---EARRRLKRLENKIKELGPVNLAaieeyEELKERYDFLTAQKEDLTEAKETLEeaIEEi 1026
|
410 420
....*....|....*....|....*.
gi 125661048 2180 -KESTTRLQE-LQQENRLFKDEIEKL 2203
Cdd:TIGR02168 1027 dREARERFKDtFDQVNENFQRVFPKL 1052
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1887-2291 |
8.12e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 8.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1887 IEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAmraeagpveqqfLQETEKLMKEKLEVQcQAEKVRGDLQKQVK 1966
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREA------------LQRLAEYSWDEIDVA-SAEREIAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1967 ALEidveeqvsrfieleqEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDR---EHERDVFQQEIQKLEHQLKAVPRIQ 2043
Cdd:COG4913 679 RLD---------------ASSDDLAALEEQLEELEAELEELEEELDELKGEIgrlEKELEQAEEELDELQDRLEAAEDLA 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2044 PVSEHqarevEQLTNHLKEKTDRCSELLLSkEQLQRDIQERNEEIEKLEcrvRELEQALLASAEPFPkvedqkrSGAVEA 2123
Cdd:COG4913 744 RLELR-----ALLEERFAAALGDAVERELR-ENLEERIDALRARLNRAE---EELERAMRAFNREWP-------AETADL 807
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2124 DPELSlevqlqvERDATDRKQKEITN--LEEQLEQFREEL-ENKNDEVQELLMQLEiqrkesttrlqelqQENRLFKDEI 2200
Cdd:COG4913 808 DADLE-------SLPEYLALLDRLEEdgLPEYEERFKELLnENSIEFVADLLSKLR--------------RAIREIKERI 866
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2201 EKLGFAMKESDsvstrdqpmlFGkfaqliQEKEIEID---RLNEQFIKLQQQLK------LTTDNKVIEEQKEQIQDLet 2271
Cdd:COG4913 867 DPLNDSLKRIP----------FG------PGRYLRLEarpRPDPEVREFRQELRavtsgaSLFDEELSEARFAALKRL-- 928
|
410 420
....*....|....*....|
gi 125661048 2272 qIERLMSEREHEKKQREEEV 2291
Cdd:COG4913 929 -IERLRSEEEESDRRWRARV 947
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1790-2362 |
8.69e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 8.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1790 SRLQAAVEK------LLEAISETNTQLEHAKVTQTEL--MRESFRQKQEATEslhcleelrerLQEESRAREQLAEELNK 1861
Cdd:COG4913 238 ERAHEALEDareqieLLEPIRELAERYAAARERLAELeyLRAALRLWFAQRR-----------LELLEAELEELRAELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1862 AEsvidgysDEKTLFERQIQEKTDIIEHLEQEVLcmNN---RLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQ 1938
Cdd:COG4913 307 LE-------AELERLEARLDALREELDELEAQIR--GNggdRLEQLEREIERLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1939 ETEKLmkekLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKN---AELTDLRQQSQALEKQLEKMRKFLDEQ- 2014
Cdd:COG4913 378 SAEEF----AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELReleAEIASLERRKSNIPARLLALRDALAEAl 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2015 -------------------------AIDR-------------EHERDV--------FQQEI--QKLEHQLKAVPRIQP-- 2044
Cdd:COG4913 454 gldeaelpfvgelievrpeeerwrgAIERvlggfaltllvppEHYAAAlrwvnrlhLRGRLvyERVRTGLPDPERPRLdp 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2045 --------VSEHQARE-----------------VEQLTNH---------------LKEKTDR---CSELLL------SKE 2075
Cdd:COG4913 534 dslagkldFKPHPFRAwleaelgrrfdyvcvdsPEELRRHpraitragqvkgngtRHEKDDRrriRSRYVLgfdnraKLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2076 QLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEAD-PELSLEV-QLQVERDATDRKQKEITNLEEQ 2153
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDvASAEREIaELEAELERLDASSDDLAALEEQ 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2154 LEQFREELENKNDEVQELlmQLEIQRKEST-TRLQELQQENRLFKDEIEKLGfamkesdsvSTRDQPMLFGKFAQLIQEK 2232
Cdd:COG4913 694 LEELEAELEELEEELDEL--KGEIGRLEKElEQAEEELDELQDRLEAAEDLA---------RLELRALLEERFAAALGDA 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2233 eieidRLNEQFIKLQQQlklttdnkvIEEQKEQIQDLETQIERLMseREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQR 2312
Cdd:COG4913 763 -----VERELRENLEER---------IDALRARLNRAEEELERAM--RAFNREWPAETADLDADLESLPEYLALLDRLEE 826
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 2313 EGartLPEDEESFKHQLDKVTAEKLV-----LEQQVETTNQVMTHMNNVLKEINF 2362
Cdd:COG4913 827 DG---LPEYEERFKELLNENSIEFVAdllskLRRAIREIKERIDPLNDSLKRIPF 878
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1954-2482 |
8.72e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 8.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1954 AEKVRGDLQKQVKALEIDV----------EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKfLDEQAIDREHERD 2023
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELaeldeeieryEEQREQARETRDEADEVLEEHEERREELETLEAEIED-LRETIAETERERE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2024 VFQQEIQKLEHQL----KAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELE 2099
Cdd:PRK02224 276 ELAEEVRDLRERLeeleEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2100 QAllasaepfpkvEDQKRSGAVEadpelsLEVQLQVERDATDRKQKEITNLEEQLEQFREELEN---KNDEVQELLMQLE 2176
Cdd:PRK02224 356 ER-----------AEELREEAAE------LESELEEAREAVEDRREEIEELEEEIEELRERFGDapvDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2177 IQRKESTTRLQELQQENRLFKDEIEKlGFAMKESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQfiklqqqlklttdn 2256
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEE-AEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAE-------------- 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2257 kvIEEQKEQIQDLETQIERLMSEREHEKkQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEK 2336
Cdd:PRK02224 484 --LEDLEEEVEEVEERLERAEDLVEAED-RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2337 LVLEQQVETTNQVmthmnnvLKEINFKMDQITQSLCNLNKECASNEELPSLPKEsvhmtvhelgsdnlqpedapAQDVTK 2416
Cdd:PRK02224 561 AEAEEEAEEAREE-------VAELNSKLAELKERIESLERIRTLLAAIADAEDE--------------------IERLRE 613
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 125661048 2417 PLEKQTSLTRLQKSPEASRTQEIESLASSV-GAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQ 2482
Cdd:PRK02224 614 KREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
270-818 |
1.70e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.42 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 270 EMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNER 349
Cdd:pfam05483 107 KLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYM 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 350 KCSEEIKELMRTVEELqkrnlkdswletsavrRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMSQIEELKSQhK 429
Cdd:pfam05483 187 DLNNNIEKMILAFEEL----------------RVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQ-I 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 430 REMENTLKSDTNA-AISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVlgeKSALQSQsndlLEEVRFLREQVQKA 508
Cdd:pfam05483 250 TEKENKMKDLTFLlEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDI---KMSLQRS----MSTQKALEEDLQIA 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 509 RQTI----AEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKE---KNAVLDRMAE---S 578
Cdd:pfam05483 323 TKTIcqltEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMElqkKSSELEEMTKfknN 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 579 QEAELERLRT-----QLLFSHEEELSKLKEDLEVEHRINI------EKLKDNLGI----------HYKQQIDGLQNEMNR 637
Cdd:pfam05483 403 KEVELEELKKilaedEKLLDEKKQFEKIAEELKGKEQELIfllqarEKEIHDLEIqltaiktseeHYLKEVEDLKTELEK 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 638 ---KMESMQCETDNLITQQNQLILENS----KLRDLQECLVNSKSEE--MNLQINELQ-KEIEILKQEEKEKGTLEQEVQ 707
Cdd:pfam05483 483 eklKNIELTAHCDKLLLENKELTQEASdmtlELKKHQEDIINCKKQEerMLKQIENLEeKEMNLRDELESVREEFIQKGD 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 708 ELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLR 787
Cdd:pfam05483 563 EVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLE 642
|
570 580 590
....*....|....*....|....*....|.
gi 125661048 788 KETEDLQQQCLYLNEEIEKQRNTFAFAEKNF 818
Cdd:pfam05483 643 LELASAKQKFEEIIDNYQKEIEDKKISEEKL 673
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1780-2204 |
1.91e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1780 ENEELMLNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEEL 1859
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1860 NKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLL--CRQREAMRAEAGPVEQQFL 1937
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELaeAAARLLLLLEAEADYEGFL 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1938 QETEKLmkEKLEVQCQAEKVRGDLQKQVKALEIDVE---------------EQVSRFIELEQEKN---AELTDLRQQSQA 1999
Cdd:COG1196 508 EGVKAA--LLLAGLRGLAGAVAVLIGVEAAYEAALEaalaaalqnivveddEVAAAAIEYLKAAKagrATFLPLDKIRAR 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2000 LEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQR 2079
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2080 DIQERNEEIEKLECRVRELEQALlasaepfpkvEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFRE 2159
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERL----------AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE 735
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 125661048 2160 ELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLG 2204
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1877-2276 |
1.94e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.08 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1877 ERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQL--LCRQREAMRAEAGPVEQQF------LQETEKLMKEKL 1948
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlpLYQELEALEAELAELPERLeeleerLEELRELEEELE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1949 EVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKflDEQAIDREHERDVFQQE 2028
Cdd:COG4717 167 ELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE--ELEQLENELEAAALEER 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2029 IQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLEC--RVRELEQALLAS- 2105
Cdd:COG4717 245 LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAlpALEELEEEELEEl 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2106 AEPFPKVEDQKRSGAVEADPELSlEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEvqELLMQLEIQRkesttR 2185
Cdd:COG4717 325 LAALGLPPDLSPEELLELLDRIE-ELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEE--ELRAALEQAE-----E 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2186 LQELQQENRLFKDEIEKLGFAMKESDSVSTRDQpmLFGKFAQL---IQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQ 2262
Cdd:COG4717 397 YQELKEELEELEEQLEELLGELEELLEALDEEE--LEEELEELeeeLEELEEELEELREELAELEAELEQLEEDGELAEL 474
|
410
....*....|....
gi 125661048 2263 KEQIQDLETQIERL 2276
Cdd:COG4717 475 LQELEELKAELREL 488
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1801-2099 |
2.90e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 56.67 E-value: 2.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1801 EAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAesvidgYSDEKTLFERQI 1880
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMA------MERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1881 QEKTDIIEHLEQEVLCMN-NRLQELEsdqrRVEEERQllcRQREAMRAEAGPVEQQFLQETEK------LMKEKLEVQCQ 1953
Cdd:pfam17380 356 EERKRELERIRQEEIAMEiSRMRELE----RLQMERQ---QKNERVRQELEAARKVKILEEERqrkiqqQKVEMEQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1954 AEKVRgdlQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQK-- 2031
Cdd:pfam17380 429 QEEAR---QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEErk 505
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 125661048 2032 ---LEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELE 2099
Cdd:pfam17380 506 qamIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERERE 576
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
250-597 |
3.31e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 3.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 250 KKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEKQALIdELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQ 329
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGY-ELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 330 RNQEIQSLKLELGN-SQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVRRVEQETQRKLSHLQAELdemygkqivQ 408
Cdd:TIGR02169 263 LEKRLEEIEQLLEElNKKIKDLGEEEQLRVKEKIGELE--------AEIASLERSIAEKERELEDAEERL---------A 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 409 MKQELINQHMSQIEELKSQhkREMENTLKSDTNAAISKEQvnlmnAAINELNVRLQETHAQKEELKGELGVVLGEKSALQ 488
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELERE--IEEERKRRDKLTEEYAELK-----EELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 489 SQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSL----STVEDLKAEIVAASESRKELelkhEAEITNYKIKLEML 564
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIneleEEKEDKALEIKKQEWKLEQL----AADLSKYEQELYDL 474
|
330 340 350
....*....|....*....|....*....|...
gi 125661048 565 EKEKNAVLDRMAESQEaELERLRTQLLFSHEEE 597
Cdd:TIGR02169 475 KEEYDRVEKELSKLQR-ELAEAEAQARASEERV 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2939-3240 |
3.34e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 3.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2939 LEQRIQEQGIEYHTAMDCLQ--KADRRSLLAEIEDLRAQINGGKMTLER-----EQGTEKSSQELLDCSMQQKQSLEMQL 3011
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEelEEELEQLRKELEELSRQISALRKDLARleaevEQLEERIAQLSKELTELEAEIEELEE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3012 ELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELgTTLKAQHKRLKE--------LEAFRSEVKEKTDEIHFLSDTL 3083
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-DELRAELTLLNEeaanlrerLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3084 AREQKNSLELQWALEKEKArsghhegrEKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSE 3163
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEE--------LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 125661048 3164 EQGRNLGLQALLESEQVRIQEMKSTLdkeRELYaQLQSREDGGQPPPALPSEDLLKELQKQLEEKHSRI--VELLSETE 3240
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERL---SEEY-SLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpVNLAAIEE 994
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
2029-2299 |
3.35e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 56.40 E-value: 3.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2029 IQKLEHQLKAV--PRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELeqallasa 2106
Cdd:COG2433 382 LEELIEKELPEeePEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA-------- 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2107 epfpkveDQKRSGAVEADPELSlevqlqverdatdRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRL 2186
Cdd:COG2433 454 -------RSEERREIRKDREIS-------------RLDREIERLERELEEERERIEELKRKLERLKELWKLEHSGELVPV 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2187 QELQQenrLFKDEIEKL--GFAMKESDSVSTRDqPMLFGK-FAQLIQEKEIE-IDRLNEQFIKLQQQLKlttDNK--VIE 2260
Cdd:COG2433 514 KVVEK---FTKEAIRRLeeEYGLKEGDVVYLRD-ASGAGRsTAELLAEAGPRaVIVPGELSEAADEVLF---EEGipVLP 586
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 125661048 2261 EQKEQIQ-----------DLETQIERLmsEREHEKKQREEEVEQLTGVVE 2299
Cdd:COG2433 587 AEDVTIQevddlavvdeeELEAAIEDW--EERAEERRREKKAEMLERLIS 634
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1526-2091 |
5.78e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 5.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1526 LNEQLEDMRQELVRQYEEHQQATEMLRQAHM------QQMERQREDQEQLQEEIKRLNEQLAQ-KSSIDTEHVVSERERV 1598
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAelarleQDIARLEERRRELEERLEELEEELAElEEELEELEEELEELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1599 LLEELEALKQLPLAGRKELCCELRHSSTQTQDGHDDQEVEEQTLKDKTLERSpEDALLDRNLSNERYALKKANNRLLKIL 1678
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA-ELAAQLEELEEAEEALLERLERLEEEL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1679 LEVVKTTSAAEETIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPEDCARAMDEsipsypgtaiaTHDSIWSKVTE 1758
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE-----------LLEELAEAAAR 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1759 EGAELSQRLVRSGFAGPVIDPENEELMLNISSRLQ------AAVEKLLEAISETNTQLEHAKVTQTELMRESF--RQKQE 1830
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAvligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYlkAAKAG 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1831 ATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEvlcmNNRLQELESDQRR 1910
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA----LRRAVTLAGRLRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1911 VEEERQLLcRQREAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAEL 1990
Cdd:COG1196 649 VTLEGEGG-SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1991 TDLRQQSQALEKQLEKMRKFLDEQAIDREHE---RDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDrc 2067
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEppdLEELERELERLEREIEALGPVNLLAIEEYEELEERYDFLSEQRE-- 805
|
570 580
....*....|....*....|....
gi 125661048 2068 sELLLSKEQLQRDIQERNEEIEKL 2091
Cdd:COG1196 806 -DLEEARETLEEAIEEIDRETRER 828
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
128-621 |
5.79e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 5.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 128 VEKELAEKQHDIEELTQELEEMRASFGT------------EGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVE 195
Cdd:PRK03918 198 KEKELEEVLREINEISSELPELREELEKlekevkeleelkEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 196 FLELTEQSQKLQiqfqhlqaNETLQNSTLSRTATDLLQAKRQIftqqqqlqdyQKKEEDLQAQISFLQEKLrafemekdr 275
Cdd:PRK03918 278 LEEKVKELKELK--------EKAEEYIKLSEFYEEYLDELREI----------EKRLSRLEEEINGIEERI--------- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 276 kienlnaKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH--EQLTQR--NQEIQSLKLELGNSQQNERKC 351
Cdd:PRK03918 331 -------KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEelERLKKRltGLTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 352 SEEIKELMRTVEELQKR--NLKDSWLETSAVRRVEQETQRKLS-HLQAELDEMYGKQIVQMKQELInQHMSQIEELKSQh 428
Cdd:PRK03918 404 EEEISKITARIGELKKEikELKKAIEELKKAKGKCPVCGRELTeEHRKELLEEYTAELKRIEKELK-EIEEKERKLRKE- 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 429 KREMENTLKSDTNAAISKEQVNLMNAAINELNV----RLQETHAQKEELKGELGVVLGEKSALQS---QSNDLLEEVRFL 501
Cdd:PRK03918 482 LRELEKVLKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKSLKKeleKLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 502 REQVQKARQTIAEQENRLSEarKSLSTVEDLKAEI----------VAASESRKELELKHE-------------AEITNYK 558
Cdd:PRK03918 562 EKKLDELEEELAELLKELEE--LGFESVEELEERLkelepfyneyLELKDAEKELEREEKelkkleeeldkafEELAETE 639
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 125661048 559 IKLEMLEKEKNAVLDRMAESQEAELERLRTQL---LFSHEEELSKLKEDLEvEHRINIEKLKDNLG 621
Cdd:PRK03918 640 KRLEELRKELEELEKKYSEEEYEELREEYLELsreLAGLRAELEELEKRRE-EIKKTLEKLKEELE 704
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3007-3299 |
7.76e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 7.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3007 LEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLARE 3086
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3087 QKNSLELQWALEKEKARsghhegreKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQG 3166
Cdd:TIGR02168 753 SKELTELEAEIEELEER--------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3167 RNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSRedggqpppalpsedlLKELQKQLEEKHSRIVELLSETEKykldS 3246
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAE---------------IEELEELIEELESELEALLNERAS----L 885
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 125661048 3247 LQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQV 3299
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
128-808 |
8.09e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 8.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 128 VEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQ 207
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE 1167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 208 IqfqhlqanetlqnstlSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAqisfLQEKLRAfemEKDRKIENLNAKEiQE 287
Cdd:PTZ00121 1168 E----------------ARKAEDAKKAEAARKAEEVRKAEELRKAEDARK----AEAARKA---EEERKAEEARKAE-DA 1223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 288 KQAlidELNTRVVEEEKKTVELK--NKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIK-------EL 358
Cdd:PTZ00121 1224 KKA---EAVKKAEEAKKDAEEAKkaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKadeakkaEE 1300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 359 MRTVEELQKRnlKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGK-QIVQMKQELINQHMSQIEELKSQHKREMENTLK 437
Cdd:PTZ00121 1301 KKKADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 438 SDTNAAISKEQVNlmnaAINELNVRLQETHAQKEELKgelgvvlgEKSALQSQSndllEEVRFLREQVQKARQTI--AEQ 515
Cdd:PTZ00121 1379 KADAAKKKAEEKK----KADEAKKKAEEDKKKADELK--------KAAAAKKKA----DEAKKKAEEKKKADEAKkkAEE 1442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 516 ENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEitnykiklemlEKEKNAVLDRMAESQEAELERLRTQllfshE 595
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE-----------EAKKADEAKKKAEEAKKKADEAKKA-----A 1506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 596 EELSKLKEDLEVEHRINIEKLKdnlgihykqqidglQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKS 675
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAK--------------KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKA 1572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 676 EEMNlqiNELQKEIEILKQEEKEK--GTLEQEVQELQLKTEQLEKQlkEKEDDLQEKCAQLDAENNILKEEKRVLEDKLK 753
Cdd:PTZ00121 1573 EEDK---NMALRKAEEAKKAEEARieEVMKLYEEEKKMKAEEAKKA--EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 754 MYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQR 808
Cdd:PTZ00121 1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1790-2091 |
9.08e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 9.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1790 SRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGY 1869
Cdd:TIGR02169 698 RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL 777
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1870 SD-----EKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLL-------------CRQREAMRAEAGP 1931
Cdd:TIGR02169 778 EEalndlEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLekeiqelqeqridLKEQIKSIEKEIE 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1932 VEQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELE---QEKNAELTDLRQQSQALEKQLEKMR 2008
Cdd:TIGR02169 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEaqiEKKRKRLSELKAKLEALEEELSEIE 937
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2009 KFLDEQAIDREHERD--VFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRcsellLSKEqlQRDIQERNE 2086
Cdd:TIGR02169 938 DPKGEDEEIPEEELSleDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK-----LEEE--RKAILERIE 1010
|
....*
gi 125661048 2087 EIEKL 2091
Cdd:TIGR02169 1011 EYEKK 1015
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
132-946 |
1.12e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.80 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 132 LAEKQHDIEELTQELEEMRASFG---TEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQI 208
Cdd:pfam01576 45 LQEQLQAETELCAEAEEMRARLAarkQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 209 QFQHLQA------NETL----QNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDL----QAQISFLQEKLRA-----F 269
Cdd:pfam01576 125 EKVTTEAkikkleEDILlledQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLknkhEAMISDLEERLKKeekgrQ 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 270 EMEKDRKIENLNAKEIQEK----QALIDELNTRVVEEEKktvELKNKVTTADElLGGLHEQLTQRNQEIQSLKLELGNSQ 345
Cdd:pfam01576 205 ELEKAKRKLEGESTDLQEQiaelQAQIAELRAQLAKKEE---ELQAALARLEE-ETAQKNNALKKIRELEAQISELQEDL 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 346 QNERKCSEEIKELMRTV-EELQ--KRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMkQELINQHMSQIE 422
Cdd:pfam01576 281 ESERAARNKAEKQRRDLgEELEalKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQL-QEMRQKHTQALE 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 423 ELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLR 502
Cdd:pfam01576 360 ELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQ 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 503 EQVQKARQTIAEQENRLSEARKSLSTVED--LKAEIVAASESRKELELKHeaeitnykiKLEMLEKEKNAVLDRMAESQE 580
Cdd:pfam01576 440 SELESVSSLLNEAEGKNIKLSKDVSSLESqlQDTQELLQEETRQKLNLST---------RLRQLEDERNSLQEQLEEEEE 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 581 A------ELERLRTQL-------------LFSHEEELSKLKEDLE---------VEHRINIEKLKDNLgihyKQQIDGL- 631
Cdd:pfam01576 511 AkrnverQLSTLQAQLsdmkkkleedagtLEALEEGKKRLQRELEaltqqleekAAAYDKLEKTKNRL----QQELDDLl 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 632 -----QNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKS----------EEMNLQINELQKEIEILKQE- 695
Cdd:pfam01576 587 vdldhQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKEtralslaralEEALEAKEELERTNKQLRAEm 666
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 696 -----------------EKEKGTLEQEVQELQLKTEQLEKQLKEKED-------DLQEKCAQ----LDAENNILKEEKRV 747
Cdd:pfam01576 667 edlvsskddvgknvhelERSKRALEQQVEEMKTQLEELEDELQATEDaklrlevNMQALKAQferdLQARDEQGEEKRRQ 746
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 748 LEDKLKMYSPSEQEERSIAVDPSTSKsadsrwqKEVAMLRKETEDLQQQCLYLNEEIEKQRntfafaeKNFEVNYQELQR 827
Cdd:pfam01576 747 LVKQVRELEAELEDERKQRAQAVAAK-------KKLELDLKELEAQIDAANKGREEAVKQL-------KKLQAQMKDLQR 812
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 828 EYTCLLKIRDDLEAtqtkQALEYESKLRALEEELLSKRGNPAApkgkssgifpSETLEIGEVVEKDttELMEKL------ 901
Cdd:pfam01576 813 ELEEARASRDEILA----QSKESEKKLKNLEAELLQLQEDLAA----------SERARRQAQQERD--ELADEIasgasg 876
|
890 900 910 920
....*....|....*....|....*....|....*....|....*.
gi 125661048 902 -EVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQL 946
Cdd:pfam01576 877 kSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQL 922
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1853-2342 |
1.20e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQ-----RRVEEERQL--LCRQREAM 1925
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARkadelKKAEEKKKAdeAKKAEEKK 1302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1926 RAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQ-EKNAELTDL-----RQQSQA 1999
Cdd:PTZ00121 1303 KADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAaEEKAEAAEKkkeeaKKKADA 1382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2000 LEKQLEKMRKflDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSE------------HQAREVEQLTNHLKEKTD-- 2065
Cdd:PTZ00121 1383 AKKKAEEKKK--ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEekkkadeakkkaEEAKKADEAKKKAEEAKKae 1460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2066 ---------RCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLA--SAEPFPKVEDQKRS----GAVEADPELSLE 2130
Cdd:PTZ00121 1461 eakkkaeeaKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAkkKADEAKKAEEAKKAdeakKAEEAKKADEAK 1540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2131 VQLQVERDATDRKQKEITNLEE--QLEQFREELENKNDEVQ--ELLMQLEIQRKESTTRLQElqQENRLFKDEIEKLGFA 2206
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEkkKAEEAKKAEEDKNMALRkaEEAKKAEEARIEEVMKLYE--EEKKMKAEEAKKAEEA 1618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2207 MKESDSVSTRDQPMlfgKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDN--KVIEEQKEQIQDLETQiERLMSEREHEK 2284
Cdd:PTZ00121 1619 KIKAEELKKAEEEK---KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEeaKKAEEDKKKAEEAKKA-EEDEKKAAEAL 1694
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2285 KQREEEVEQLTGVVEKLQQEVVSTEQQR--EGARTLPEDEESFKHQLDKVTAEKLVLEQQ 2342
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKkaEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1934-2164 |
1.53e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1934 QQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQE---KNAELTDLRQQSQALEKQLEKMRKF 2010
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaaLEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2011 LDEQ--AIDREHERD-----VFQQEIQKLEHQLKAvprIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQE 2083
Cdd:COG4942 106 LAELlrALYRLGRQPplallLSPEDFLDAVRRLQY---LKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2084 RNEEIEKLEcRVRELEQALLAsaepfpkvedqkrsgaveadpelSLEVQLQVERDATDRKQKEITNLEEQLEQFREELEN 2163
Cdd:COG4942 183 LEEERAALE-ALKAERQKLLA-----------------------RLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
.
gi 125661048 2164 K 2164
Cdd:COG4942 239 A 239
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
516-862 |
2.12e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 516 ENRLSEARKSLSTVEDLKAEIvaasesRKELE-LKHEAEITN--YKIKLEMLEKEKNAVLDRMaESQEAELERLRTQLlf 592
Cdd:COG1196 178 ERKLEATEENLERLEDILGEL------ERQLEpLERQAEKAEryRELKEELKELEAELLLLKL-RELEAELEELEAEL-- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 593 sheEELSKLKEDLEVEHRiNIEKLKDNLgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEclvn 672
Cdd:COG1196 249 ---EELEAELEELEAELA-ELEAELEEL----RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE---- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 673 skseemnlQINELQKEIEILKQEekekgtLEQEVQELQLKTEQLEKQ---LKEKEDDLQEKCAQLDAENNILKEEKRVLE 749
Cdd:COG1196 317 --------RLEELEEELAELEEE------LEELEEELEELEEELEEAeeeLEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 750 DKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREY 829
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
330 340 350
....*....|....*....|....*....|...
gi 125661048 830 TCLLKIRDDLEATQTKQALEYESKLRALEEELL 862
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1786-2091 |
2.13e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1786 LNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRErlqeesrareQLAEELNKAESV 1865
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE----------QLKEELKALREA 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1866 IDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEagpvEQQFLQETEKLMK 1945
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL----IEELESELEALLN 880
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1946 EKLEVQCQAEKVRGDLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAID-------- 2017
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLtleeaeal 959
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 125661048 2018 ---REHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDrcsELLLSKEQLQRDIQERNEEIEKL 2091
Cdd:TIGR02168 960 enkIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE---DLTEAKETLEEAIEEIDREARER 1033
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
282-737 |
2.15e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 282 AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLT---QRNQEIQSLKLELGNSQQNERKC------- 351
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEeheERREELETLEAEIEDLRETIAETerereel 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 352 SEEIKELMRTVEELQKRNlkDSWLETSAVRRVEQET-QRKLSHLQAELDEMygkqivqmkQELINQHMSQIEELKSQHKR 430
Cdd:PRK02224 278 AEEVRDLRERLEELEEER--DDLLAEAGLDDADAEAvEARREELEDRDEEL---------RDRLEECRVAAQAHNEEAES 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 431 EMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGEL----------GVVLGEksaLQSQSNDLLEEVRF 500
Cdd:PRK02224 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIeelrerfgdaPVDLGN---AEDFLEELREERDE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 501 LREQVQKARQTIAEQENRLSEARKSLST---------VEDlkAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAV 571
Cdd:PRK02224 424 LREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEG--SPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 572 LDrmAESQEAELERLR------TQLLFSHE----------EELSKLKEDLEVE-----------------HRINIEKLKD 618
Cdd:PRK02224 502 ED--LVEAEDRIERLEerredlEELIAERRetieekreraEELRERAAELEAEaeekreaaaeaeeeaeeAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 619 NLGiHYKQQIDGLQN---------EMNRKMESMQCETDNLITQQNQ----LILENSKLRDLQECL--------------- 670
Cdd:PRK02224 580 KLA-ELKERIESLERirtllaaiaDAEDEIERLREKREALAELNDErrerLAEKRERKRELEAEFdearieearedkera 658
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 125661048 671 ------VNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEkQLKEKEDDLQEKCAQLDAE 737
Cdd:PRK02224 659 eeyleqVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALE-ALYDEAEELESMYGDLRAE 730
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3003-3296 |
2.32e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3003 QKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKlelgttlkaqhkrlKELEAFRSEVKEKTDEIHFLSDT 3082
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ--------------KELYALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3083 LAREQKNSLELQWALEKEKARSGHHEGRE---KEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHdA 3159
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELaelEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV-A 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3160 QLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDggqpppalpsedlLKELQKQLEEKHSRIVELLSET 3239
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE-------------LKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 125661048 3240 EkykldslQTRQQMEKDRQvhqkTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKR 3296
Cdd:TIGR02168 457 E-------RLEEALEELRE----ELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1792-2334 |
3.26e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.19 E-value: 3.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1792 LQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQ----KQEATESLHCLEELRERLQEESRAREQLAEELN----KAE 1863
Cdd:pfam05483 188 LNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKiqhlEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTflleESR 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1864 SVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLlcrqreamraeAGPVEQQFLQETEKL 1943
Cdd:pfam05483 268 DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQI-----------ATKTICQLTEEKEAQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1944 MKEKLEVQCQAEKVRGDLQKQVKALE---------IDVEEQVSRFIELE-QEKNAELTDLRQQSQALEKQLEKMRKFL-- 2011
Cdd:pfam05483 337 MEELNKAKAAHSFVVTEFEATTCSLEellrteqqrLEKNEDQLKIITMElQKKSSELEEMTKFKNNKEVELEELKKILae 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2012 DEQAIDREHERDVFQQEIQKLEHQLKA---------------VPRIQPVSEHQAREVEQLTNHLK-------EKTDRCSE 2069
Cdd:pfam05483 417 DEKLLDEKKQFEKIAEELKGKEQELIFllqarekeihdleiqLTAIKTSEEHYLKEVEDLKTELEkeklkniELTAHCDK 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2070 LLLSKEQLQRDIQERNEEIEKLECRV---RELEQALLASAEPFPKVEDQKRSGAVEADPELSL---EVQLQVERDATD-- 2141
Cdd:pfam05483 497 LLLENKELTQEASDMTLELKKHQEDIincKKQEERMLKQIENLEEKEMNLRDELESVREEFIQkgdEVKCKLDKSEENar 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2142 -------RKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQ-QENRLFKDEIEKLGFAMKESDSV 2213
Cdd:pfam05483 577 sieyevlKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNaYEIKVNKLELELASAKQKFEEII 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2214 STRDQPMLFGKFAQLIQEKEIEIDRLN-EQFIKLQQQLKLTTDNKvIEEQKEQIQDLETQIERLMSEREHE---KKQREE 2289
Cdd:pfam05483 657 DNYQKEIEDKKISEEKLLEEVEKAKAIaDEAVKLQKEIDKRCQHK-IAEMVALMEKHKHQYDKIIEERDSElglYKNKEQ 735
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 125661048 2290 EVEQLTGVVE----KLQQEVVSTEQQREGARtlpEDEESFKHQLDKVTA 2334
Cdd:pfam05483 736 EQSSAKAALEielsNIKAELLSLKKQLEIEK---EEKEKLKMEAKENTA 781
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1804-2331 |
3.26e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 3.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1804 SETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQEK 1883
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1884 TDIIEHLEQEVLCMNNRLQELESDQRRVEEERQllcrqreamRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGDLQK 1963
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK---------KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1964 QVKALEIDVEEQVSRFIElEQEKNAEL---TDLRQQSQALEKQLEKMRKflDEQAIDREHERDVFQQEIQKLEHQLKAVP 2040
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAE-EAKKAEEAkkkAEEAKKADEAKKKAEEAKK--ADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2041 RIQPVSEhqAREVEQLTNhlKEKTDRCSELLLSKEQLQRDIQERNEEIEKLEcRVRELEQALLASAEpfpKVEDQKRSGA 2120
Cdd:PTZ00121 1514 EAKKAEE--AKKADEAKK--AEEAKKADEAKKAEEKKKADELKKAEELKKAE-EKKKAEEAKKAEED---KNMALRKAEE 1585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2121 VEADPELSLEVQLQVERDATDRKQKEITNLEEqlEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRlfKDEI 2200
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE--AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE--ENKI 1661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2201 EKLGFAMKESDSVSTRDQpmlFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSER 2280
Cdd:PTZ00121 1662 KAAEEAKKAEEDKKKAEE---AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 125661048 2281 EHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARtlPEDEESFKHQLDK 2331
Cdd:PTZ00121 1739 AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR--KEKEAVIEEELDE 1787
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3005-3294 |
3.53e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 3.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3005 QSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLA 3084
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3085 rEQKNSLElqwALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNtqlnllLEQQKQLLNESQQKIESQKMLHDAQLSEE 3164
Cdd:TIGR02169 755 -NVKSELK---ELEARIEELEEDLHKLEEALNDLEARLSHSRIPE------IQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3165 QGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSRedggqpppalpsedlLKELQKQLEEKHSRIVELLSETEKYKL 3244
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK---------------KEELEEELEELEAALRDLESRLGDLKK 889
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 125661048 3245 DslqtRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQE 3294
Cdd:TIGR02169 890 E----RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1872-2344 |
3.65e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.43 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1872 EKTLFERQIQEKTDIIEHLEQEvLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQET-EKLMKEKLEV 1950
Cdd:TIGR00618 353 QEIHIRDAHEVATSIREISCQQ-HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRdLQGQLAHAKK 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1951 QCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRK----FLDEQAIDR-------- 2018
Cdd:TIGR00618 432 QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAvvlaRLLELQEEPcplcgsci 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2019 ----------------------EHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQ 2076
Cdd:TIGR00618 512 hpnparqdidnpgpltrrmqrgEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQN 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2077 LQRDIQERNEEIEKLECRVRELEQALL-------------------------------ASAEPFPKVEDQKRSGAVEADP 2125
Cdd:TIGR00618 592 ITVRLQDLTEKLSEAEDMLACEQHALLrklqpeqdlqdvrlhlqqcsqelalkltalhALQLTLTQERVREHALSIRVLP 671
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2126 ELSLEvQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGF 2205
Cdd:TIGR00618 672 KELLA-SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH 750
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2206 AMKESDSVSTRDQpmlfgkfAQLIQEKEIEIDRLNEQfiklqQQLKLTTDNKvIEEQKEQIQDLETQIERLMSEREHEKK 2285
Cdd:TIGR00618 751 QARTVLKARTEAH-------FNNNEEVTAALQTGAEL-----SHLAAEIQFF-NRLREEDTHLLKTLEAEIGQEIPSDED 817
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 125661048 2286 QREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2344
Cdd:TIGR00618 818 ILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSD 876
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
218-861 |
3.71e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.26 E-value: 3.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 218 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAfEMEKDRKIENLNAKEIQEKQALID---E 294
Cdd:pfam01576 1 TRQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQA-ETELCAEAEEMRARLAARKQELEEilhE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 295 LNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRnlkdsw 374
Cdd:pfam01576 80 LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKE------ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 375 letsavRRVEQETQRKLSHLQAELDEMygkqiVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNA 454
Cdd:pfam01576 154 ------RKLLEERISEFTSNLAEEEEK-----AKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQE 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 455 AINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAE---QENRLSEARKSLS-TVE 530
Cdd:pfam01576 223 QIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeraARNKAEKQRRDLGeELE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 531 DLKAEI---VAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL-------------LFSH 594
Cdd:pfam01576 303 ALKTELedtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLeqakrnkanlekaKQAL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 595 EEELSKLKEDL--------EVEHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLrdl 666
Cdd:pfam01576 383 ESENAELQAELrtlqqakqDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKL--- 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 667 qeclvnskSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKR 746
Cdd:pfam01576 460 --------SKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKK 531
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 747 VLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQ 826
Cdd:pfam01576 532 KLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLA 611
|
650 660 670
....*....|....*....|....*....|....*...
gi 125661048 827 REYTCLLKI---RDDLEATQTKQALEYESKLRALEEEL 861
Cdd:pfam01576 612 EEKAISARYaeeRDRAEAEAREKETRALSLARALEEAL 649
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1792-2202 |
4.57e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 4.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1792 LQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATES----LHCLEELRERLQEESRAREQLAEELNKA-ESVI 1866
Cdd:TIGR04523 237 KQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNnkkiKELEKQLNQLKSEISDLNNQKEQDWNKElKSEL 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1867 DGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEagpvEQQFLQETEKLMKE 1946
Cdd:TIGR04523 317 KNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE----NQSYKQEIKNLESQ 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1947 K--LEVQCQ-AEKVRGDLQKQVKALEID---VEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQaidrEH 2020
Cdd:TIGR04523 393 IndLESKIQnQEKLNQQKDEQIKKLQQEkelLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL----ET 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2021 ERDVFQQEIQKLEHQLKAVPR--IQPVSEHQA--REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVR 2096
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKelKSKEKELKKlnEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELN 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2097 ELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDAtDRKQKEITNLEEQLEQFREELENKNDEVQELLMQ-- 2174
Cdd:TIGR04523 549 KDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELI-DQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEne 627
|
410 420
....*....|....*....|....*....
gi 125661048 2175 -LEIQRKESTTRLQELQQENRLFKDEIEK 2202
Cdd:TIGR04523 628 kLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1854-2399 |
4.94e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.74 E-value: 4.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1854 QLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRV-EEERQLLCRQREAMRAEAGPV 1932
Cdd:TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIlELDQELRKAERELSKAEKNSL 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1933 EQQFLQETEKLMKEKLEV--------QCQAEKVR-GDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLR---QQSQAL 2000
Cdd:TIGR00606 496 TETLKKEVKSLQNEKADLdrklrkldQEMEQLNHhTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfPNKKQL 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2001 EKQLEKMRKfldEQAIDREHERDVfQQEIQKLEHQlkavpriqpvSEHQAREVEQLTNHLKEKTDRCSElLLSKEQLQRD 2080
Cdd:TIGR00606 576 EDWLHSKSK---EINQTRDRLAKL-NKELASLEQN----------KNHINNELESKEEQLSSYEDKLFD-VCGSQDEESD 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2081 IQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREE 2160
Cdd:TIGR00606 641 LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKK 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2161 LENKNDEVQEL--LMQLEIQRKESttRLQELQQENRLFKDEIEKLGFAMKESDSvstrdqpmlfgKFAQLIQEKEIEIDR 2238
Cdd:TIGR00606 721 KEKRRDEMLGLapGRQSIIDLKEK--EIPELRNKLQKVNRDIQRLKNDIEEQET-----------LLGTIMPEEESAKVC 787
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2239 LNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLEtqIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTL 2318
Cdd:TIGR00606 788 LTDVTIMERFQMELKDVERKIAQQAAKLQGSD--LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK 865
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2319 PEDEESFKHQLDKVTAEKLVLEQQVETtnqVMTHMNNVLKEINFKMDQITQSLCNLNKECASNEELPSLPKESVHMTVHE 2398
Cdd:TIGR00606 866 TNELKSEKLQIGTNLQRRQQFEEQLVE---LSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDK 942
|
.
gi 125661048 2399 L 2399
Cdd:TIGR00606 943 V 943
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1782-2492 |
5.02e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 5.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1782 EELMLNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNK 1861
Cdd:pfam15921 270 EQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEK 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1862 -----------AESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLC---MNNRLQELESDQ-------RRVEEERQLLCR 1920
Cdd:pfam15921 350 qlvlanselteARTERDQFSQESGNLDDQLQKLLADLHKREKELSLekeQNKRLWDRDTGNsitidhlRRELDDRNMEVQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1921 QREA----MRAEA-GPVEQQF--LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEI------DVEEQVSRFIELEQEK- 1986
Cdd:pfam15921 430 RLEAllkaMKSECqGQMERQMaaIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAkkmtleSSERTVSDLTASLQEKe 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1987 ------NAELTDLRQQSQALEKQLEKMRKfldeqaiDREHERDVfQQEIQKLEHQLKAVPRIQPVSEHQareVEQLTNHL 2060
Cdd:pfam15921 510 raieatNAEITKLRSRVDLKLQELQHLKN-------EGDHLRNV-QTECEALKLQMAEKDKVIEILRQQ---IENMTQLV 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2061 KEKTDRCSELLLSKEQLQRDIQERNEEIEKL-------ECRVRELEQALlasaepfPKVEDQKRSGAVEADPELSLEVQL 2133
Cdd:pfam15921 579 GQHGRTAGAMQVEKAQLEKEINDRRLELQEFkilkdkkDAKIRELEARV-------SDLELEKVKLVNAGSERLRAVKDI 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2134 QVERDATDRKQK----EITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTrlqELQQENRLFKDEIEKLGFAMKe 2209
Cdd:pfam15921 652 KQERDQLLNEVKtsrnELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS---ELEQTRNTLKSMEGSDGHAMK- 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2210 sdsvstrdqpmlfgkfaqliqekeieidrlneqfIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREE 2289
Cdd:pfam15921 728 ----------------------------------VAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNK 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2290 EVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVT-----AEKLVLEQQVETTNQVMTHMNNVlKEIN--- 2361
Cdd:pfam15921 774 LSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASlqfaeCQDIIQRQEQESVRLKLQHTLDV-KELQgpg 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2362 -FKMDQITQSLCNLNKECASNEELPSLPKESVHMTVHELGSDNLQPEdaPAQDVTKPLEKQTSLTRLQKSPEASRTQEiE 2440
Cdd:pfam15921 853 yTSNSSMKPRLLQPASFTRTHSNVPSSQSTASFLSHHSRKTNALKED--PTRDLKQLLQELRSVINEEPTVQLSKAED-K 929
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 125661048 2441 SLASSVGAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQRSLEKFAAAL 2492
Cdd:pfam15921 930 GRAPSLGALDDRVRDCIIESSLRSDICHSSSNSLQTEGSKSSETCSREPVLL 981
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2118-2315 |
6.73e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.75 E-value: 6.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2118 SGAVEADPelslevQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTT---RLQELQQENR 2194
Cdd:COG3883 9 PTPAFADP------QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKlqaEIAEAEAEIE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2195 LFKDEIEKLGFAMKESDSVSTRDQPMLFGK-FAQLIQEKEIeIDRLNEQFIKLQQQLKltTDNKVIEEQKEQIQDLETQI 2273
Cdd:COG3883 83 ERREELGERARALYRSGGSVSYLDVLLGSEsFSDFLDRLSA-LSKIADADADLLEELK--ADKAELEAKKAELEAKLAEL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 125661048 2274 ERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGA 2315
Cdd:COG3883 160 EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3012-3326 |
7.35e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 7.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3012 ELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIhflsDTLAREQKNSL 3091
Cdd:PTZ00121 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL----KKAAAAKKKAD 1421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3092 EL-QWALEKEKARSGHHEGREKEELEDLKFSLEDQKR-----------RNTQLNLLLEQQKQLLNESQQKIESQKMLHDA 3159
Cdd:PTZ00121 1422 EAkKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKaeeakkkaeeaKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3160 QLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERElyAQLQSREDGGQPPPALPSEDLLK-ELQKQLEEKHS-------- 3230
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA--DEAKKAEEKKKADELKKAEELKKaEEKKKAEEAKKaeedknma 1579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3231 -RIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGKRL 3309
Cdd:PTZ00121 1580 lRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
|
330
....*....|....*..
gi 125661048 3310 QGLMQEFQKQELEPEEK 3326
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKK 1676
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
254-812 |
8.50e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 8.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 254 DLQAQISFLQEKLRAFEMEKDRKIENLNA------------KEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLG 321
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEadevleeheerrEELETLEAEIEDLRETIAETEREREELAEEVRDLRERLE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 322 GLHEqltqrnqEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRnlkdswLETSAVRrveqetqrklshlqaeldem 401
Cdd:PRK02224 290 ELEE-------ERDDLLAEAGLDDADAEAVEARREELEDRDEELRDR------LEECRVA-------------------- 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 402 ygkqiVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVL 481
Cdd:PRK02224 337 -----AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 482 GEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQEnRLSEARKSLSTVEDLK-AEIVAASESRKELELKHEAEITNYKIK 560
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAE-ALLEAGKCPECGQPVEgSPHVETIEEDRERVEELEAELEDLEEE 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 561 LEMLEKEKNAVLDrmAESQEAELERLRTQLlfSHEEELSKLKEDLEVEHRINIEKLKDnlgihykqQIDGLQNEMNRKME 640
Cdd:PRK02224 491 VEEVEERLERAED--LVEAEDRIERLEERR--EDLEELIAERRETIEEKRERAEELRE--------RAAELEAEAEEKRE 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 641 SMQCETDNlitqqnqlilENSKLRDLQEClvNSKSEEMNLQINELQKEIEILKQEEKekgtLEQEVQELQLKTEQL---E 717
Cdd:PRK02224 559 AAAEAEEE----------AEEAREEVAEL--NSKLAELKERIESLERIRTLLAAIAD----AEDEIERLREKREALaelN 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 718 KQLKEKEDDLQEKCAQLDA---ENNI--LKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETED 792
Cdd:PRK02224 623 DERRERLAEKRERKRELEAefdEARIeeAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREA 702
|
570 580
....*....|....*....|...
gi 125661048 793 LQQQCLYLN---EEIEKQRNTFA 812
Cdd:PRK02224 703 LENRVEALEalyDEAEELESMYG 725
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
118-336 |
9.14e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 9.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 118 AQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFL 197
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEE-KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 198 ELT----EQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEK 273
Cdd:COG4942 94 ELRaeleAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 125661048 274 DRKIENLN---------AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQS 336
Cdd:COG4942 174 AELEALLAeleeeraalEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1853-2384 |
1.05e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.98 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1853 EQLAEELNKAESVIDG--YSDEKTLFERQIQE---KTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRA 1927
Cdd:TIGR01612 1146 DEIKAQINDLEDVADKaiSNDDPEEIEKKIENivtKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGK 1225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1928 -------EAGPVEQQFLQETEKLMKEKLEVQCQAEKVRG------DLQKQVKALEIDVEEQVSRFIeLEQEKNAELTDLR 1994
Cdd:TIGR01612 1226 lflekidEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENemgiemDIKAEMETFNISHDDDKDHHI-ISKKHDENISDIR 1304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1995 QQSQAL------EKQLEKMRKFLDEQAID-REHERDVFQ--QEIQKLEHQLK--AVPRIQPVSEHQAREVEQLTNHLKEK 2063
Cdd:TIGR01612 1305 EKSLKIiedfseESDINDIKKELQKNLLDaQKHNSDINLylNEIANIYNILKlnKIKKIIDEVKEYTKEIEENNKNIKDE 1384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2064 TDRcSELLLSKEQLQRDIQERNEEIEKL-------EC--RVRELEQALLA----------SAEPFPK------------- 2111
Cdd:TIGR01612 1385 LDK-SEKLIKKIKDDINLEECKSKIESTlddkdidECikKIKELKNHILSeesnidtyfkNADENNEnvlllfkniemad 1463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2112 ------VEDQKRSGAVEADPELSlEVQLQVER-----DATDRKQKEITNLEEQLEQFREEL-----------------EN 2163
Cdd:TIGR01612 1464 nksqhiLKIKKDNATNDHDFNIN-ELKEHIDKskgckDEADKNAKAIEKNKELFEQYKKDVtellnkysalaiknkfaKT 1542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2164 KND------EVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPmLFGKFAQLIQ------- 2230
Cdd:TIGR01612 1543 KKDseiiikEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLEN-FENKFLKISDikkkind 1621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2231 --------EKEIEIDRLNEQFIKLQQQLK-----------LTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREeev 2291
Cdd:TIGR01612 1622 clketesiEKKISSFSIDSQDTELKENGDnlnslqeflesLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYE--- 1698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2292 eqlTGVVEKLQQEVVSTEQQREGARTLPEDE-ESFKHQLDKVTAEKLVLEQQVETTNqvmTHMNNVLKEINFKMDQITQS 2370
Cdd:TIGR01612 1699 ---IGIIEKIKEIAIANKEEIESIKELIEPTiENLISSFNTNDLEGIDPNEKLEEYN---TEIGDIYEEFIELYNIIAGC 1772
|
650
....*....|....
gi 125661048 2371 LCNLNKECASNEEL 2384
Cdd:TIGR01612 1773 LETVSKEPITYDEI 1786
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
465-764 |
1.05e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 465 ETHAQKEELKGELGVVLGEKSALQSQSNDLLEEV---RFLREQVQKARQTiaEQENRLSEARKSLSTVEDLKAEIVAASE 541
Cdd:pfam17380 263 QTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMeqeRLRQEKEEKAREV--ERRRKLEEAEKARQAEMDRQAAIYAEQE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 542 sRKELELKHEAE---ITNYKIKLEMLEKEKNAV-LDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLK 617
Cdd:pfam17380 341 -RMAMERERELErirQEERKRELERIRQEEIAMeISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQK 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 618 DNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEK 697
Cdd:pfam17380 420 VEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK 499
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 125661048 698 EKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILK----EEKRVLEDKLKMYSpseqEERS 764
Cdd:pfam17380 500 ELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKqqemEERRRIQEQMRKAT----EERS 566
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2142-2488 |
1.27e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2142 RKQKEITnlEEQLEQFREELENKNDEVQELLMQLE-IQRK-ESTTRLQELQQENR-----LFKDEIEKLGFAMKESDSVS 2214
Cdd:TIGR02168 171 KERRKET--ERKLERTRENLDRLEDILNELERQLKsLERQaEKAERYKELKAELRelelaLLVLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2215 TRDQPMLFgKFAQLIQEKEIEIDRLNEQFIKLQQqlKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQL 2294
Cdd:TIGR02168 249 KEAEEELE-ELTAELQELEEKLEELRLEVSELEE--EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2295 TGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNvlkeinfKMDQITQSLCNL 2374
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS-------KVAQLELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2375 NKECASNEELPSLPKESVHMTVHELGSDNLQPEDAPAQDVTKPL-EKQTSLTRLQKSPEASRTQEIeslassvgakdvEL 2453
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeELEEELEELQEELERLEEALE------------EL 466
|
330 340 350
....*....|....*....|....*....|....*
gi 125661048 2454 TQCREQTETIQEQAQSETDRLQKKLTDLQRSLEKF 2488
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
282-522 |
1.29e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 282 AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRT 361
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 362 VEELQKRnlkdswLETSAVRRVEQETQRKLSHL-------QAELDEMYGKQIVQMKQELINQHMSQIEELKSQhkremen 434
Cdd:COG4942 99 LEAQKEE------LAELLRALYRLGRQPPLALLlspedflDAVRRLQYLKYLAPARREQAEELRADLAELAAL------- 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 435 tlksdtNAAISKEQVNLmNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAE 514
Cdd:COG4942 166 ------RAELEAERAEL-EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*...
gi 125661048 515 QENRLSEA 522
Cdd:COG4942 239 AAERTPAA 246
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2928-3326 |
1.49e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2928 STRDVDGLLNSLEQRIQEQGIEYHTAMDCLQKADR-----RSLLAEIEDLRAQINGGKMTLEREQGTEKSSQELLdcSMQ 3002
Cdd:PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREeleklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI--REL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3003 QKQSLEMQLELSSLRDRAAELQEQLSSEKMVVA------ELKSELAQAKLELGT---TLKAQHKRLKELEAFRSEVKEKT 3073
Cdd:PRK03918 265 EERIEELKKEIEELEEKVKELKELKEKAEEYIKlsefyeEYLDELREIEKRLSRleeEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3074 DEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQ 3153
Cdd:PRK03918 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3154 KM-------------LHDAQLSEEQGRNLGLQALLESEQVRiQEMKSTLDKERELYAQLQSREDGGQPPPALPSEDLLKE 3220
Cdd:PRK03918 425 KKaieelkkakgkcpVCGRELTEEHRKELLEEYTAELKRIE-KELKEIEEKERKLRKELRELEKVLKKESELIKLKELAE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3221 LQKQLEEKHSRIV--ELLSETEKY-----KLDSLQTRQQMEKDRQVHQKTLQTEQEANtqgQKKMQELQSKVEELQRQLQ 3293
Cdd:PRK03918 504 QLKELEEKLKKYNleELEKKAEEYeklkeKLIKLKGEIKSLKKELEKLEELKKKLAEL---EKKLDELEEELAELLKELE 580
|
410 420 430
....*....|....*....|....*....|....*....
gi 125661048 3294 EKR-QQVYKLDLEGKRLQGLMQEF-----QKQELEPEEK 3326
Cdd:PRK03918 581 ELGfESVEELEERLKELEPFYNEYlelkdAEKELEREEK 619
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
284-945 |
1.57e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.59 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 284 EIQEKQALIDELNTRVveeeKKTVELK----NKVTTADELLG----GLHEQLTQRNQEIQSLKLELgnSQQNERKCSEEI 355
Cdd:TIGR01612 604 ELKEKIKNISDKNEYI----KKAIDLKkiieNNNAYIDELAKispyQVPEHLKNKDKIYSTIKSEL--SKIYEDDIDALY 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 356 KELMRTVEElqkrnlkdswletSAVRRVEQETqrKLSHLQAELDEMYGKqIVQMKQELINQHMSQIEELKSQhkrement 435
Cdd:TIGR01612 678 NELSSIVKE-------------NAIDNTEDKA--KLDDLKSKIDKEYDK-IQNMETATVELHLSNIENKKNE-------- 733
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 436 lKSDTNAAISKEQVNLMNaaiNELNVRLQETHAQKEEL----------KGELGVVLGEKSALQSQSNDLL-------EEV 498
Cdd:TIGR01612 734 -LLDIIVEIKKHIHGEIN---KDLNKILEDFKNKEKELsnkindyakeKDELNKYKSKISEIKNHYNDQInidnikdEDA 809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 499 RFLREQVQKARQTIAEQENrlsEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKL-EMLEKEKNAVLDRMAE 577
Cdd:TIGR01612 810 KQNYDKSKEYIKTISIKED---EIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFaELTNKIKAEISDDKLN 886
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 578 SQEAEL---ERLRTQLLFSHEEELSKLKEDLEVEHRINI-EKLKDNL-GIHYKQQIdgLQNEMNRKMESMQceTDNLITQ 652
Cdd:TIGR01612 887 DYEKKFndsKSLINEINKSIEEEYQNINTLKKVDEYIKIcENTKESIeKFHNKQNI--LKEILNKNIDTIK--ESNLIEK 962
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 653 QNQLILENS---KLRDLQECLVNSKSEEMNLQINELQKEIEILKQ--------------EEKEKGT--LEQEVQELQLKT 713
Cdd:TIGR01612 963 SYKDKFDNTlidKINELDKAFKDASLNDYEAKNNELIKYFNDLKAnlgknkenmlyhqfDEKEKATndIEQKIEDANKNI 1042
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 714 EQLEKQLKEKEDDLQEKCAQLDAEN------NILKEEK------RVLEDKLKMYSPSEqeersiavdpsTSKSADSRWQK 781
Cdd:TIGR01612 1043 PNIEIAIHTSIYNIIDEIEKEIGKNiellnkEILEEAEinitnfNEIKEKLKHYNFDD-----------FGKEENIKYAD 1111
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 782 EVAMLRKETEDLQQQclylneeIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEyesklraleeel 861
Cdd:TIGR01612 1112 EINKIKDDIKNLDQK-------IDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIE------------ 1172
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 862 lSKRGNPAAPKGKSSGIFPSETLEIGEV--VEKDTTElmekLEVTKREKLELSEKVSGL-----SEQLKQTHCTINSLSA 934
Cdd:TIGR01612 1173 -KKIENIVTKIDKKKNIYDEIKKLLNEIaeIEKDKTS----LEEVKGINLSYGKNLGKLflekiDEEKKKSEHMIKAMEA 1247
|
730
....*....|.
gi 125661048 935 EVRALKQEKEQ 945
Cdd:TIGR01612 1248 YIEDLDEIKEK 1258
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
125-536 |
1.75e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 125 LQMVEKELAEKQHDIEELTQELEEMRASfgTEGLKQLQEFEAAIKQRDGIITQLtANLQQARREKDDTMVEFLELTEQSQ 204
Cdd:COG4717 97 LEELEEELEELEAELEELREELEKLEKL--LQLLPLYQELEALEAELAELPERL-EELEERLEELRELEEELEELEAELA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 205 KLQIQFQHLQANETLQN-STLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKienlNAK 283
Cdd:COG4717 174 ELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLK----EAR 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 284 EIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTV- 362
Cdd:COG4717 250 LLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALg 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 363 --EELQKRNLKDSWLETSAVRRV-----EQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMsQIEELKSqhKREMENT 435
Cdd:COG4717 330 lpPDLSPEELLELLDRIEELQELlreaeELEEELQLEELEQEIAALLAEAGVEDEEELRAALE-QAEEYQE--LKEELEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 436 LKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRF--LREQVQKARQTIA 513
Cdd:COG4717 407 LEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELaeLLQELEELKAELR 486
|
410 420
....*....|....*....|...
gi 125661048 514 EQENRLSEARKSLSTVEDLKAEI 536
Cdd:COG4717 487 ELAEEWAALKLALELLEEAREEY 509
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
446-642 |
1.76e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 446 KEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSqsndlLEEVRFLREQVQKARQTIAEQENRLSEARKS 525
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR-----LAEYSWDEIDVASAEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 526 LSTVEDLKAEIVAASESRKELelkhEAEITNYKIKLEMLEKEknavLDRMAESQEAELERLRTQLLFSHEEELSKLKEDL 605
Cdd:COG4913 684 SDDLAALEEQLEELEAELEEL----EEELDELKGEIGRLEKE----LEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
170 180 190
....*....|....*....|....*....|....*..
gi 125661048 606 EvehRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESM 642
Cdd:COG4913 756 A---AALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1960-2316 |
2.17e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1960 DLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDRE-----HERDVFQQEIQKLEH 2034
Cdd:COG4717 75 ELEEELKEAE-EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQElealeAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2035 QLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCS--------ELLLSKEQLQRDIQERNEEIEKLECRVRELEQAL---- 2102
Cdd:COG4717 154 RLEELRELEEELEELEAELAELQEELEELLEQLSlateeelqDLAEELEELQQRLAELEEELEEAQEELEELEEELeqle 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2103 --LASAEPFPKVEDQKRSGAVEA--------------------------------------DPELSLEVQLQVERDATDR 2142
Cdd:COG4717 234 neLEAAALEERLKEARLLLLIAAallallglggsllsliltiagvlflvlgllallflllaREKASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2143 KQKEITNLEEQLEQFREELENKNDEVQELLMQLEiQRKESTTRLQELQQENRLfkDEIEKLGFAMKESDSVSTRDQpmlf 2222
Cdd:COG4717 314 EELEEEELEELLAALGLPPDLSPEELLELLDRIE-ELQELLREAEELEEELQL--EELEQEIAALLAEAGVEDEEE---- 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2223 gkFAQLIQEKEiEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQ 2302
Cdd:COG4717 387 --LRAALEQAE-EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELE 463
|
410
....*....|....*....
gi 125661048 2303 Q-----EVVSTEQQREGAR 2316
Cdd:COG4717 464 QleedgELAELLQELEELK 482
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1863-2510 |
2.35e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1863 ESVIDGYSDEKTLFERQIQEKTDIIE----HLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFlq 1938
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEkqkfYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHEL-- 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1939 ETEKLMKEKL--EVQCQAEKVR-------GDLQkQVKALEIDVEEQVSRfiELEQEKNAELTDLRQQSQALEKQLEKMR- 2008
Cdd:pfam15921 155 EAAKCLKEDMleDSNTQIEQLRkmmlsheGVLQ-EIRSILVDFEEASGK--KIYEHDSMSTMHFRSLGSAISKILRELDt 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2009 --KFLDEQAIDREHERDVFQQEIQ-KLEHQLKA-VPRI-QPVSEHQArEVEQLTNHLKEKTDRCSELLLSKEQLQRDIQE 2083
Cdd:pfam15921 232 eiSYLKGRIFPVEDQLEALKSESQnKIELLLQQhQDRIeQLISEHEV-EITGLTEKASSARSQANSIQSQLEIIQEQARN 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2084 RNE----EIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSlevQLQVERDatdrkqkeitnleeqleQFRE 2159
Cdd:pfam15921 311 QNSmymrQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELT---EARTERD-----------------QFSQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2160 ELENKNDEVQELLMQLEIQRKESTTrlqELQQENRLFKDE------IEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEKE 2233
Cdd:pfam15921 371 ESGNLDDQLQKLLADLHKREKELSL---EKEQNKRLWDRDtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2234 IEIDRLN------EQFIKLQQQLKLTTD--NKVIEEQKEQIQDLETQiERLMSEREHEKKQREEEVEQLTGVVEKLQ--- 2302
Cdd:pfam15921 448 RQMAAIQgkneslEKVSSLTAQLESTKEmlRKVVEELTAKKMTLESS-ERTVSDLTASLQEKERAIEATNAEITKLRsrv 526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2303 ----QEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQ-----------VMTHMNNVLKEINFKMDQI 2367
Cdd:pfam15921 527 dlklQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQlvgqhgrtagaMQVEKAQLEKEINDRRLEL 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2368 TQSLCNLNKECASNEELPS----LPKESVHMTvhELGSDNLQpedaPAQDVTKPLEKQTSLTRLQKSPEASRTQEIESLA 2443
Cdd:pfam15921 607 QEFKILKDKKDAKIRELEArvsdLELEKVKLV--NAGSERLR----AVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLK 680
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 2444 SSVGAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQRS---LEKFAAALVSQV-----QMEAAQEYVPFHQE 2510
Cdd:pfam15921 681 RNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghAMKVAMGMQKQItakrgQIDALQSKIQFLEE 755
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
468-796 |
2.51e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 468 AQKEELKGELGVV---LGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRlsEARKSLSTVEDLKAEIVAASESRK 544
Cdd:TIGR02169 170 RKKEKALEELEEVeenIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY--EGYELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 545 ELElkheAEITNYKIKLEMLEKEKNAVldrmaesqEAELERLRTQLLFSHEEELSKLKEDLEvEHRINIEKLKDNLGIhY 624
Cdd:TIGR02169 248 SLE----EELEKLTEEISELEKRLEEI--------EQLLEELNKKIKDLGEEEQLRVKEKIG-ELEAEIASLERSIAE-K 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 625 KQQIDGLQNEMnRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKE-------IEILKQEEK 697
Cdd:TIGR02169 314 ERELEDAEERL-AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkefaetRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 698 EKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADS 777
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330
....*....|....*....
gi 125661048 778 RWQKEVAMLRKETEDLQQQ 796
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRE 491
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
471-623 |
2.53e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.24 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 471 EELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKAR-------QTIAEQENRLsearkslstvEDLKAEIVAASESR 543
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEaeveeleAELEEKDERI----------ERLERELSEARSEE 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 544 KElELKHEAEITNYKIKLEMLEKEKNAvLDRMAESQEAELERLRTQLLFSHEEELSKLK--EDLEVEHrinIEKLKDNLG 621
Cdd:COG2433 458 RR-EIRKDREISRLDREIERLERELEE-ERERIEELKRKLERLKELWKLEHSGELVPVKvvEKFTKEA---IRRLEEEYG 532
|
..
gi 125661048 622 IH 623
Cdd:COG2433 533 LK 534
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
497-756 |
3.63e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.93 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 497 EVRFLREQVQKARqtIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEItnykikLEMLEKEKNAVLDRMa 576
Cdd:PRK05771 32 HIEDLKEELSNER--LRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL------IKDVEEELEKIEKEI- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 577 ESQEAELERLRTQLlfsheEELSKLKEDLEVEHRINIEkLKDNLGIHYKQQIDGLQNEmnRKMESMQCETDNLitqqNQL 656
Cdd:PRK05771 103 KELEEEISELENEI-----KELEQEIERLEPWGNFDLD-LSLLLGFKYVSVFVGTVPE--DKLEELKLESDVE----NVE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 657 ILENSKLRDLqeCLVNSKSEEMNLQINELqKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDA 736
Cdd:PRK05771 171 YISTDKGYVY--VVVVVLKELSDEVEEEL-KKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247
|
250 260
....*....|....*....|
gi 125661048 737 ENNILKEEKRVLEDKLKMYS 756
Cdd:PRK05771 248 ELLALYEYLEIELERAEALS 267
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
681-860 |
3.90e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 3.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 681 QINELQKEIE----ILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDL---QEKCAQLDAENNILKEEKRVLEDKLK 753
Cdd:COG4942 28 ELEQLQQEIAelekELAALKKEEKALLKQLAALERRIAALARRIRALEQELaalEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 754 -----MYSPSEQEERSIAVDPSTSKSADSRW----------QKEVAMLRKETEDLQQqclyLNEEIEKQRNTFAFAEKNF 818
Cdd:COG4942 108 ellraLYRLGRQPPLALLLSPEDFLDAVRRLqylkylaparREQAEELRADLAELAA----LRAELEAERAELEALLAEL 183
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 125661048 819 EVNYQELQREytclLKIRDDLEATQTKQALEYESKLRALEEE 860
Cdd:COG4942 184 EEERAALEAL----KAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1853-2377 |
4.17e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.79 E-value: 4.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESD----QRRVEEER---QLLCRQREAM 1925
Cdd:pfam01576 22 QKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEIlhelESRLEEEEersQQLQNEKKKM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1926 RAEAGPVEQQFLQET---EKLMKEKLEVQCQAEKVRGD----------LQKQVKALEIDVEEQVSRFIElEQEKNAELTD 1992
Cdd:pfam01576 102 QQHIQDLEEQLDEEEaarQKLQLEKVTTEAKIKKLEEDillledqnskLSKERKLLEERISEFTSNLAE-EEEKAKSLSK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1993 LRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQlkavpriqpVSEHQAReVEQLTNHLKEKTDRCSELLL 2072
Cdd:pfam01576 181 LKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQ---------IAELQAQ-IAELRAQLAKKEEELQAALA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2073 SKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpelSLEVQLQVERDATDRKQKEITNLEE 2152
Cdd:pfam01576 251 RLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELE---ALKTELEDTLDTTAAQQELRSKREQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2153 QLEQFREELEnknDEVQELLMQLEIQRKESTTRLQELQQE---NRLFKDEIEKLGFAMKESDSVSTRDQPMLfgkfAQLI 2229
Cdd:pfam01576 328 EVTELKKALE---EETRSHEAQLQEMRQKHTQALEELTEQleqAKRNKANLEKAKQALESENAELQAELRTL----QQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2230 QEKEIEIDRLNEQFIKLqqQLKLTTDNKVIEEQKEQIQDLETQIER---LMSEREHEKKQREEEV----EQLTGVVEKLQ 2302
Cdd:pfam01576 401 QDSEHKRKKLEGQLQEL--QARLSESERQRAELAEKLSKLQSELESvssLLNEAEGKNIKLSKDVssleSQLQDTQELLQ 478
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 2303 QEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2377
Cdd:pfam01576 479 EETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRE 553
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
3002-3326 |
4.31e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.79 E-value: 4.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3002 QQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLkaqhKRLKELEAFRSEVKEKTDEIhflsd 3081
Cdd:pfam01576 199 EEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAAL----ARLEEETAQKNNALKKIREL----- 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3082 tlareQKNSLELQWALEKEKARSGHHEGREK---EELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHD 3158
Cdd:pfam01576 270 -----EAQISELQEDLESERAARNKAEKQRRdlgEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3159 AQLSE-EQGRNLGLQALLES-EQVR-----IQEMKSTLDKER-ELYAQLQSREDGGQpppalPSEDLLKELQKQLEEKHS 3230
Cdd:pfam01576 345 AQLQEmRQKHTQALEELTEQlEQAKrnkanLEKAKQALESENaELQAELRTLQQAKQ-----DSEHKRKKLEGQLQELQA 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3231 RivelLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGKRLQ 3310
Cdd:pfam01576 420 R----LSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLE 495
|
330
....*....|....*.
gi 125661048 3311 GLMQEFQKQELEPEEK 3326
Cdd:pfam01576 496 DERNSLQEQLEEEEEA 511
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1973-2203 |
4.34e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.54 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1973 EEQVSRFIELEQEKNAE-LTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKL-EHQLKAVPRIQPVSEHQA 2050
Cdd:PRK05771 27 ELGVVHIEDLKEELSNErLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELiKDVEEELEKIEKEIKELE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2051 REVEQLTNHLKEKTDRCSEL------------LLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEP-------FPK 2111
Cdd:PRK05771 107 EEISELENEIKELEQEIERLepwgnfdldlslLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKgyvyvvvVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2112 VEDQKRSGAVEADPELSlEVQLQVERDATDR---KQKEITNLEEQLEQFREELENKNDEVQELLMQ----LEIQRKESTT 2184
Cdd:PRK05771 187 KELSDEVEEELKKLGFE-RLELEEEGTPSELireIKEELEEIEKERESLLEELKELAKKYLEELLAlyeyLEIELERAEA 265
|
250 260
....*....|....*....|....*.
gi 125661048 2185 RLQELqQENRLF-------KDEIEKL 2203
Cdd:PRK05771 266 LSKFL-KTDKTFaiegwvpEDRVKKL 290
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1958-2202 |
4.81e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 4.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1958 RGDLQKQVKALEIDvEEQVSRFIELEQEKNAELTDLRQQSQALEKQ---LEKMRKFLDEQAIDREHERDVFQQEIQKLEH 2034
Cdd:PLN02939 99 RASMQRDEAIAAID-NEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNillLNQARLQALEDLEKILTEKEALQGKINILEM 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2035 QL-KAVPRIQPVSEHQAR------EVEQLTNHLKEK--TDRCSELLLSKE---------QLQRDIQERNEEI-------- 2088
Cdd:PLN02939 178 RLsETDARIKLAAQEKIHveileeQLEKLRNELLIRgaTEGLCVHSLSKEldvlkeenmLLKDDIQFLKAELievaetee 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2089 -----EK----LECRVRELEQALLASAEPFPKVEDQKrsgaVEADPELSLEVQLQVERdATDRKQKEITNLEEQleqfrE 2159
Cdd:PLN02939 258 rvfklEKerslLDASLRELESKFIVAQEDVSKLSPLQ----YDCWWEKVENLQDLLDR-ATNQVEKAALVLDQN-----Q 327
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 125661048 2160 ELENKNDEVQELLMQLEIQrKESTTRLQELQQENRLFKDEIEK 2202
Cdd:PLN02939 328 DLRDKVDKLEASLKEANVS-KFSSYKVELLQQKLKLLEERLQA 369
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
538-737 |
4.85e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 4.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 538 AASESRKELElKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLrTQLLFSHEEELSKLKEDLEvEHRINIEKLK 617
Cdd:COG4942 21 AAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAAL-ARRIRALEQELAALEAELA-ELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 618 DNLGIH---YKQQIDGLQ-----------------NEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEcLVNSKSEE 677
Cdd:COG4942 97 AELEAQkeeLAELLRALYrlgrqpplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA-ELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 678 MNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAE 737
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
625-750 |
5.63e-05 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 48.48 E-value: 5.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 625 KQQIDGLQNEMNRKMESMQCETDNLITQQNQLileNSKLRDLQECLVNSKSEEMNLQinELQKEIEILKQEE----KEK- 699
Cdd:smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELL---NSIKPKLRDRKDALEEELRQLK--QLEDELEDCDPTEldraKEKl 213
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 125661048 700 GTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLED 750
Cdd:smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
484-722 |
5.86e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 5.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 484 KSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVeDLKAEIVAASESRKELelkhEAEITNYKIKLEM 563
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLV-DLSEEAKLLLQQLSEL----ESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 564 LEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEhrinIEKLKDNlgiH-----YKQQIDGLQNEMNRK 638
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAEL----SARYTPN---HpdviaLRAQIAALRAQLQQE 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 639 MESMqcetdnLITQQNQLILENSKLRDLQEclvnskseemnlQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEK 718
Cdd:COG3206 311 AQRI------LASLEAELEALQAREASLQA------------QLAQLEARLAELPELEAELRRLEREVEVARELYESLLQ 372
|
....
gi 125661048 719 QLKE 722
Cdd:COG3206 373 RLEE 376
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
223-862 |
5.92e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 5.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 223 TLSRTATDLLQAKRQIfTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKienlnakEIQEKQALIDELNTRVVEE 302
Cdd:COG4913 236 DLERAHEALEDAREQI-ELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR-------RLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 303 EKKTVELKNKVTTADELLGGLHEQLTQR-NQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVR 381
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALG--------LPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 382 RVEQETQRKLSHLQAELDEMYGKQivqmkQELINQHMSQIEELKSQH---KREMENTLKSDTNaaISKEQVNLMNAAINE 458
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEAL-----EEALAEAEAALRDLRRELrelEAEIASLERRKSN--IPARLLALRDALAEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 459 LNVRlqethaqKEELK--GELGVVLGEKS--------ALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLST 528
Cdd:COG4913 453 LGLD-------EAELPfvGELIEVRPEEErwrgaierVLGGFALTLLVPPEHYAAALRWVNRLHLRGRLVYERVRTGLPD 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 529 VEDLKAEivAASESRKeLELKhEAEITNYkiklemLEKEKNAVLDRM-AESQEaELERLRTQL----LFSHEEEL-SKLK 602
Cdd:COG4913 526 PERPRLD--PDSLAGK-LDFK-PHPFRAW------LEAELGRRFDYVcVDSPE-ELRRHPRAItragQVKGNGTRhEKDD 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 603 EDLEVEHRI----NIEKLKdnlgiHYKQQIDGLQNEMNrkmesmqcETDNLITQQNQLILENSKLRDLQECLVNSKSEEM 678
Cdd:COG4913 595 RRRIRSRYVlgfdNRAKLA-----ALEAELAELEEELA--------EAEERLEALEAELDALQERREALQRLAEYSWDEI 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 679 NL-----QINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLkekeDDLQEKCAQLDAENNILKEEKRVLEDKLk 753
Cdd:COG4913 662 DVasaerEIAELEAELERLDASSDDLAALEEQLEELEAELEELEEEL----DELKGEIGRLEKELEQAEEELDELQDRL- 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 754 myspseqEERSIAVDPSTSKSADSRWQKevAMLRKETEDLQQQclyLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLL 833
Cdd:COG4913 737 -------EAAEDLARLELRALLEERFAA--ALGDAVERELREN---LEERIDALRARLNRAEEELERAMRAFNREWPAET 804
|
650 660 670
....*....|....*....|....*....|
gi 125661048 834 K-IRDDLEATQtkqalEYESKLRALEEELL 862
Cdd:COG4913 805 AdLDADLESLP-----EYLALLDRLEEDGL 829
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2074-2336 |
6.28e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2074 KEQLQRDIQERNEEIEKLECRVRELEQAL------LASAEPFPKVEDQKR--SGAVEADPELSLEVQLQverdatdRKQK 2145
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLerlrreREKAERYQALLKEKReyEGYELLKEKEALERQKE-------AIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2146 EITNLEEQLEQFREELENKNDEVQEllmqLEIQRKESTTRLQEL-QQENRLFKDEIEKLgfamkESDSVSTRDQpmlfgk 2224
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEE----IEQLLEELNKKIKDLgEEEQLRVKEKIGEL-----EAEIASLERS------ 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2225 faqlIQEKEIEIDRLNEQFIKLQQQlklttdnkvIEEQKEQIQDLETQIERLMSEREhekkQREEEVEQLTGVVEKLQQE 2304
Cdd:TIGR02169 310 ----IAEKERELEDAEERLAKLEAE---------IDKLLAEIEELEREIEEERKRRD----KLTEEYAELKEELEDLRAE 372
|
250 260 270
....*....|....*....|....*....|..
gi 125661048 2305 VvstEQQREGARTLPEDEESFKHQLDKVTAEK 2336
Cdd:TIGR02169 373 L---EEVDKEFAETRDELKDYREKLEKLKREI 401
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
535-867 |
6.40e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 6.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 535 EIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQ----EAELERLRTQLLFSHEEELSKLKEDLEVE-- 608
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIidleELKLQELKLKEQAKKALEYYQLKEKLELEee 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 609 ---------HRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQcETDNLITQQNQLILENSKLRDLQECLVNSKSEEMN 679
Cdd:pfam02463 225 yllyldylkLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLA-QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 680 LQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQ------EKCAQLDAENNILKEEKRVLEDKLK 753
Cdd:pfam02463 304 KLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREaeeeeeEELEKLQEKLEQLEEELLAKKKLES 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 754 MYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREyTCLL 833
Cdd:pfam02463 384 ERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL-KLLK 462
|
330 340 350
....*....|....*....|....*....|....
gi 125661048 834 KIRDDLEATQTKQALEYESKLRALEEELLSKRGN 867
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
496-1062 |
7.27e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 7.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 496 EEVRFLRE--QVQKARQtiAEQENRLSEARKSlstVEDLKAEIVA-ASESRKELELKHEAEITNYKIKLEMLEKEKNAVL 572
Cdd:PTZ00121 1191 EELRKAEDarKAEAARK--AEEERKAEEARKA---EDAKKAEAVKkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 573 DRMAESQEAELERLRTQLlfSHEEELSKLKEDLEVEHRINIEKLKDNLGIHYK-QQIDGLQNEMNRKMESMQCETDNLIT 651
Cdd:PTZ00121 1266 ARRQAAIKAEEARKADEL--KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKKADAAKKKAEEAKK 1343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 652 QQNQLILENSKLRDLQEClVNSKSEEMNLQINELQKEIEILKQ--EEKEKG-TLEQEVQELQLKTEQLEK--QLKEKEDD 726
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEA-AEEKAEAAEKKKEEAKKKADAAKKkaEEKKKAdEAKKKAEEDKKKADELKKaaAAKKKADE 1422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 727 LQEKCAQLDAENNILK---------EEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEvamLRKETEDLQQQC 797
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKkaeeakkadEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE---AKKKAEEAKKKA 1499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 798 --LYLNEEIEKQRNTFAFAE---KNFEVNYQELQREYTCLLKIRDDLEATQTKQALEY---------ESKLRALEEELLS 863
Cdd:PTZ00121 1500 deAKKAAEAKKKADEAKKAEeakKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaeekkkaEEAKKAEEDKNMA 1579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 864 KRGNPAAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRalkQEK 943
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK---KAE 1656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 944 EQLLLRCGELELLANPSGTENAAVCPVQMSSYQAGLVMGKVGDSGGSISKISKDLAEE-------SKPMIEDKIPFKESG 1016
Cdd:PTZ00121 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEkkkaeelKKAEEENKIKAEEAK 1736
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 125661048 1017 REQlllPTRAQKPSHATVEPCESEKLQQELHALKAEQDDLRLQMEA 1062
Cdd:PTZ00121 1737 KEA---EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
580-866 |
7.51e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 7.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 580 EAELERLRTQLlfSHEEELSKLKEDLEvehriniEKLKDNLGIHYKQQIDGLQ------NEMNRKMESMQCETDNLITQQ 653
Cdd:TIGR02168 199 ERQLKSLERQA--EKAERYKELKAELR-------ELELALLVLRLEELREELEelqeelKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 654 NQLILENSKLRDLQEcLVNSKSEEMNLQINELQKEIEILKQE----EKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQE 729
Cdd:TIGR02168 270 EELRLEVSELEEEIE-ELQKELYALANEISRLEQQKQILRERlanlERQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 730 KCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRN 809
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 125661048 810 TFAFAEKN-FEVNYQELQREYTCLLKIRDDLEA---TQTKQALEYESKLRALEEELLSKRG 866
Cdd:TIGR02168 429 KLEEAELKeLQAELEELEEELEELQEELERLEEaleELREELEEAEQALDAAERELAQLQA 489
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
3000-3327 |
7.78e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 7.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3000 SMQQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELgttlkAQHKRLKELEAFRSEVKEKTDEIHFL 3079
Cdd:pfam17380 264 TMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-----ERRRKLEEAEKARQAEMDRQAAIYAE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3080 SDTLAREQKNSLElqwALEKEKARSGHHEGREKE---------ELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKI 3150
Cdd:pfam17380 339 QERMAMERERELE---RIRQEERKRELERIRQEEiameisrmrELERLQMERQQKNERVRQELEAARKVKILEEERQRKI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3151 ESQKM-LHDAQLSEEQGRNLGLQaLLESEQVRiqEMKSTLDKERELYAQLQS-REDGGQPPPALPSEDLLKELQKQLEEK 3228
Cdd:pfam17380 416 QQQKVeMEQIRAEQEEARQREVR-RLEEERAR--EMERVRLEEQERQQQVERlRQQEEERKRKKLELEKEKRDRKRAEEQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3229 HSRIVEL-LSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQ-----EANTQGQKKMQElQSKVEELQRQLQEKRQQVYKL 3302
Cdd:pfam17380 493 RRKILEKeLEERKQAMIEEERKRKLLEKEMEERQKAIYEEErrreaEEERRKQQEMEE-RRRIQEQMRKATEERSRLEAM 571
|
330 340
....*....|....*....|....*.
gi 125661048 3303 DLEGKRLQGLMQ-EFQKQELEPEEKP 3327
Cdd:pfam17380 572 EREREMMRQIVEsEKARAEYEATTPI 597
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1793-2203 |
8.09e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 8.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1793 QAAVEKLLEAISETNTQLEHAKVTQTELmRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDE 1872
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEEL-REELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEEL 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1873 KTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKLEVQC 1952
Cdd:COG4717 166 EELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1953 QAEKVRGDLQKQVKALEIDVEEQVSRFIELeqeknAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQ-EIQK 2031
Cdd:COG4717 246 KEARLLLLIAAALLALLGLGGSLLSLILTI-----AGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEElEEEE 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2032 LEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRcsellLSKEQLQRDIQERNEEIEKLecrvreLEQALLASAEPFPK 2111
Cdd:COG4717 321 LEELLAALGLPPDLSPEELLELLDRIEELQELLRE-----AEELEEELQLEELEQEIAAL------LAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2112 VEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEIT--NLEEQLEQFREELENKNDEVQELLMQL-----EIQRKESTT 2184
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeELEEELEELEEELEELEEELEELREELaeleaELEQLEEDG 469
|
410
....*....|....*....
gi 125661048 2185 RLQELQQENRLFKDEIEKL 2203
Cdd:COG4717 470 ELAELLQELEELKAELREL 488
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1853-2172 |
8.14e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.07 E-value: 8.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPV 1932
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDS 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1933 EQQFLQETEKLMKE-KLEVQCQAEKVRGDL-----QKQVKALEIdVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEK 2006
Cdd:pfam12128 680 ANERLNSLEAQLKQlDKKHQAWLEEQKEQKreartEKQAYWQVV-EGALDAQLALLKAAIAARRSGAKAELKALETWYKR 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2007 MRKFL--DEQAI-DREHERDVFQQEIQKLEHQLKAV---------------PRIQPVSEHQAREVEQLTNHLKEKTDRcS 2068
Cdd:pfam12128 759 DLASLgvDPDVIaKLKREIRTLERKIERIAVRRQEVlryfdwyqetwlqrrPRLATQLSNIERAISELQQQLARLIAD-T 837
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2069 ELLLSKEQLQRDIQER-----NEEIEKLECRVREL---------EQALLASAEPFPKVEDQKRSGAveadpELSLEVQLQ 2134
Cdd:pfam12128 838 KLRRAKLEMERKASEKqqvrlSENLRGLRCEMSKLatlkedansEQAQGSIGERLAQLEDLKLKRD-----YLSESVKKY 912
|
330 340 350
....*....|....*....|....*....|....*...
gi 125661048 2135 VERDATDRKQKEITNLEEQLEQFREELENKNDEVQELL 2172
Cdd:pfam12128 913 VEHFKNVIADHSGSGLAETWESLREEDHYQNDKGIRLL 950
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
276-867 |
8.99e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 8.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 276 KIENLNAKEIQEkqalideLNTRVVEEEKKTVELKNKVTTADELLG---GLHEQLTQRNQEIQSLKLELGNSQQNERKCS 352
Cdd:TIGR01612 1059 EIEKEIGKNIEL-------LNKEILEEAEINITNFNEIKEKLKHYNfddFGKEENIKYADEINKIKDDIKNLDQKIDHHI 1131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 353 EEIKELMRTVE------ELQKRNLKDSwLETSAVRRVEQETQRKLSHLQAELDEMygKQIVQMKQELINQhMSQIEELKS 426
Cdd:TIGR01612 1132 KALEEIKKKSEnyideiKAQINDLEDV-ADKAISNDDPEEIEKKIENIVTKIDKK--KNIYDEIKKLLNE-IAEIEKDKT 1207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 427 QHKR---------EMENTL---KSDTNAAISKEQVNLMNAAINELNvrlqETHAQKEELKGELGVVLGEKSALQ--SQSN 492
Cdd:TIGR01612 1208 SLEEvkginlsygKNLGKLfleKIDEEKKKSEHMIKAMEAYIEDLD----EIKEKSPEIENEMGIEMDIKAEMEtfNISH 1283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 493 DLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEI-VAASESRkelelKHEAEITNYKIKLE------MLE 565
Cdd:TIGR01612 1284 DDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELqKNLLDAQ-----KHNSDINLYLNEIAniynilKLN 1358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 566 KEKNaVLDRMAESQEaELERLRTQL---LFSHEEELSKLKEDLEVEH-RINIEKLKDNLGIH--------YKQQIDGLQN 633
Cdd:TIGR01612 1359 KIKK-IIDEVKEYTK-EIEENNKNIkdeLDKSEKLIKKIKDDINLEEcKSKIESTLDDKDIDecikkikeLKNHILSEES 1436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 634 EMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEI---------------------EIL 692
Cdd:TIGR01612 1437 NIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIdkskgckdeadknakaieknkELF 1516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 693 KQEEKEKGTLEQEVQELQLK---------TEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEer 763
Cdd:TIGR01612 1517 EQYKKDVTELLNKYSALAIKnkfaktkkdSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKA-- 1594
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 764 siAVDPSTSKSADSRWQKEVAMLRKETEDlqqqCLYLNEEIEKQRNTFAFAEKNFEV-----NYQELQREYTCLLKIRDD 838
Cdd:TIGR01612 1595 --AIDIQLSLENFENKFLKISDIKKKIND----CLKETESIEKKISSFSIDSQDTELkengdNLNSLQEFLESLKDQKKN 1668
|
650 660
....*....|....*....|....*....
gi 125661048 839 LEaTQTKQALEYESKLRALEEELLSKRGN 867
Cdd:TIGR01612 1669 IE-DKKKELDELDSEIEKIEIDVDQHKKN 1696
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1902-2345 |
9.07e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 9.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1902 QELESDQRRVEEERQLLCRQReAMRAEAGPVEQQFLQETEK-------LMKEKLEVQCQAEKVRGDLQKQVKALEIDVEE 1974
Cdd:TIGR00606 635 QDEESDLERLKEEIEKSSKQR-AMLAGATAVYSQFITQLTDenqsccpVCQRVFQTEAELQEFISDLQSKLRLAPDKLKS 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1975 QVSRFIELEQE-----------------KNAELTDLRQQSQALEKQLEKMRKFLDEQ------AIDREHERDVFQQE--- 2028
Cdd:TIGR00606 714 TESELKKKEKRrdemlglapgrqsiidlKEKEIPELRNKLQKVNRDIQRLKNDIEEQetllgtIMPEEESAKVCLTDvti 793
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2029 IQKLEHQLKAVPR--IQPVSEHQA----REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQAL 2102
Cdd:TIGR00606 794 MERFQMELKDVERkiAQQAAKLQGsdldRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2103 LASAEPFpkvedQKRSGAVEADPELSLEVQlqverdATDRKQKEITNLEEQLEQFREELENKNDEVqellmqleIQRKES 2182
Cdd:TIGR00606 874 LQIGTNL-----QRRQQFEEQLVELSTEVQ------SLIREIKDAKEQDSPLETFLEKDQQEKEEL--------ISSKET 934
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2183 TTRLQelQQENRLFKDEIEKLGFAMKESDSVSTRdqpmlfGKFAQLIQeKEIEIDRLNEQFIKLQQQLK-----LTTDNK 2257
Cdd:TIGR00606 935 SNKKA--QDKVNDIKEKVKNIHGYMKDIENKIQD------GKDDYLKQ-KETELNTVNAQLEECEKHQEkinedMRLMRQ 1005
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2258 VIEEQKEQIQDLETQIERLMseREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQR--EGARTLPEDEESFKHQLDKVTAE 2335
Cdd:TIGR00606 1006 DIDTQKIQERWLQDNLTLRK--RENELKEVEEELKQHLKEMGQMQVLQMKQEHQKleENIDLIKRNHVLALGRQKGYEKE 1083
|
490
....*....|
gi 125661048 2336 KLVLEQQVET 2345
Cdd:TIGR00606 1084 IKHFKKELRE 1093
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1786-2313 |
9.15e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 9.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1786 LNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESV 1865
Cdd:TIGR00618 402 LDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQI 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1866 IDGYSDEKTLFERqiqektdiiehleqevlcmnnRLQELESDQRRVEEerQLLCRQREAMRAEAGPVEQQFLQETEKLMK 1945
Cdd:TIGR00618 482 HLQETRKKAVVLA---------------------RLLELQEEPCPLCG--SCIHPNPARQDIDNPGPLTRRMQRGEQTYA 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1946 EKLEVQcqaEKVRGDLQKQVKALEIDVEEqvsrfielEQEKNAELTDLRQQSQALEKQLEKMRKFLDeqaidreherdvf 2025
Cdd:TIGR00618 539 QLETSE---EDVYHQLTSERKQRASLKEQ--------MQEIQQSFSILTQCDNRSKEDIPNLQNITV------------- 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2026 qqeiqklehqlkavpRIQPVSEHQAREVEQLTNHLKEktdrcselLLSKEQLQRDIQERNEEIEKLECRVRELEQALLAS 2105
Cdd:TIGR00618 595 ---------------RLQDLTEKLSEAEDMLACEQHA--------LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHAL 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2106 AEPFPKVEDQKRSGAVEADPELSLEvQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTR 2185
Cdd:TIGR00618 652 QLTLTQERVREHALSIRVLPKELLA-SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSL 730
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2186 LQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQ------EKEIEIDRLNEQFIKLQQQLKlTTDNKVI 2259
Cdd:TIGR00618 731 GSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQtgaelsHLAAEIQFFNRLREEDTHLLK-TLEAEIG 809
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 125661048 2260 EEQKEQIQDLETQIERLMSEREhEKKQREEEVEQLTGVVEKLQQEVVSTEQQRE 2313
Cdd:TIGR00618 810 QEIPSDEDILNLQCETLVQEEE-QFLSRLEEKSATLGEITHQLLKYEECSKQLA 862
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2132-2344 |
9.96e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 9.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2132 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEK----LGFAM 2207
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAqkeeLAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2208 KESDSVSTRDQPMLFGKFAQLiqekeieidrlnEQFIKLQQQLKlttdnKVIEEQKEQIQDLETQIERLMSEREHEKKQR 2287
Cdd:COG4942 111 RALYRLGRQPPLALLLSPEDF------------LDAVRRLQYLK-----YLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 125661048 2288 EEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2344
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3058-3326 |
1.07e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3058 RLKELEAFRSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEdqkrrntqlnllle 3137
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS-------------- 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3138 qqkqllnESQQKIESQKmlhdaqlseeqgrnlglqALLESEQVRIQEMKSTLDKERELYAQLQSREDGGQPPpalpseDL 3217
Cdd:TIGR02169 748 -------SLEQEIENVK------------------SELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP------EI 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3218 LKELQKqLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQ 3297
Cdd:TIGR02169 797 QAELSK-LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875
|
250 260
....*....|....*....|....*....
gi 125661048 3298 QVYKLDLEGKRLQGLMQEFQKQELEPEEK 3326
Cdd:TIGR02169 876 ALRDLESRLGDLKKERDELEAQLRELERK 904
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
325-545 |
1.07e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 325 EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRnLKDSWLETSAVRRVEQETQRKLSHLQAELDE---M 401
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELRAELEAqkeE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 402 YGKQIVQMkqelinQHMSQIEELK----SQHKREMENTLK--SDTNAAIsKEQVNLMNAAINELNVRLQETHAQKEELKG 475
Cdd:COG4942 106 LAELLRAL------YRLGRQPPLAlllsPEDFLDAVRRLQylKYLAPAR-REQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 476 ELgvvlgekSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKE 545
Cdd:COG4942 179 LL-------AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
652-763 |
1.25e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.85 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 652 QQNQLILENSKLRdlqeclVNSKSEEMNLQINElqkEIEILKQE-EKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEK 730
Cdd:PRK12704 38 EEAKRILEEAKKE------AEAIKKEALLEAKE---EIHKLRNEfEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110
....*....|....*....|....*....|...
gi 125661048 731 CAQLDAENNILKEEKRVLEDKLKMYSPSEQEER 763
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQL 141
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1973-2337 |
1.43e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1973 EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEqaidREHERDVFQQEIQKLEHQLKAVpriqpvsEHQARE 2052
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEE----VLREINEISSELPELREELEKL-------EKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2053 VEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRsgaveadpelsLEVQ 2132
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-----------LSEF 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2133 LQVERDATDRKQKEITNLEEQLEQFRE---ELENKNDEVQEllmqLEIQRKESTTRLQELQQENRLFKDEIEKlgfaMKE 2209
Cdd:PRK03918 302 YEEYLDELREIEKRLSRLEEEINGIEErikELEEKEERLEE----LKKKLKELEKRLEELEERHELYEEAKAK----KEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2210 SDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQqlKLTTDNKVIEEQKEQIQDL---------------ETQIE 2274
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA--RIGELKKEIKELKKAIEELkkakgkcpvcgreltEEHRK 451
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 125661048 2275 RLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGA------RTLPEDEESFKHQLDKVTAEKL 2337
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKEseliklKELAEQLKELEEKLKKYNLEEL 520
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
379-956 |
1.69e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 379 AVRRVEQETQRKLSHLQAELDEMYGKQIVqmkqELINQHMSQIEELKSQHKREMENTLKS----DTNAAI------SKEQ 448
Cdd:PRK02224 177 GVERVLSDQRGSLDQLKAQIEEKEEKDLH----ERLNGLESELAELDEEIERYEEQREQAretrDEADEVleeheeRREE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 449 VNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLST 528
Cdd:PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 529 VEdlkaeiVAASEsrkelelkHEAEITNYKIKLEMLE------KEKNAVLDRMAESQEAELERLRTQL--LFSHEEELSK 600
Cdd:PRK02224 333 CR------VAAQA--------HNEEAESLREDADDLEeraeelREEAAELESELEEAREAVEDRREEIeeLEEEIEELRE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 601 LKEDLEVEhrinIEKLKDNLgihykqqiDGLQNEMNRKMESMQCETDNLITQQNQlILENSKLRDLQECLVNSkseemnl 680
Cdd:PRK02224 399 RFGDAPVD----LGNAEDFL--------EELREERDELREREAELEATLRTARER-VEEAEALLEAGKCPECG------- 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 681 QINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEdDLQEKCAQLDAenniLKEEKRVLEDKLkmyspSEQ 760
Cdd:PRK02224 459 QPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIER----LEERREDLEELI-----AER 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 761 EERsiaVDPSTSKSADSRwqKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQReytcLLKIRDDL- 839
Cdd:PRK02224 529 RET---IEEKRERAEELR--ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES----LERIRTLLa 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 840 ---EATQTKQAL-EYESKLRALEEE----LLSKRGNPAAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLEL 911
Cdd:PRK02224 600 aiaDAEDEIERLrEKREALAELNDErrerLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDL 679
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 125661048 912 SEKVSGLSEQLKqthctinslsaEVRALKQEKEQLLLRCGELELL 956
Cdd:PRK02224 680 QAEIGAVENELE-----------ELEELRERREALENRVEALEAL 713
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1897-2237 |
1.94e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1897 MNNRLQELESDQRRVEEERQLLCRQR-EAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQ 1975
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAkKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1976 VSRFIELEQEKNAELTDLRQQSQALEKQLEKMrKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQ 2055
Cdd:pfam02463 261 EKEEEKLAQVLKENKEEEKEKKLQEEELKLLA-KEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2056 LTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQK----RSGAVEADPELSLEV 2131
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKseeeKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2132 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESD 2211
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERS 499
|
330 340
....*....|....*....|....*.
gi 125661048 2212 SVSTRDQPMLFGKFAQLIQEKEIEID 2237
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRII 525
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2141-2506 |
2.03e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 2.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2141 DRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRkESTTRLQELQqenrlfkDEIEKLGFAMKESDSVSTRDQpm 2220
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRER-EKAERYQALL-------KEKREYEGYELLKEKEALERQ-- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2221 lfgkfaqlIQEKEIEIDRLNEQFIKLQQQLKltTDNKVIEEQKEQIQDLETQIERLMSErehEKKQREEEVEQLTGVVEK 2300
Cdd:TIGR02169 239 --------KEAIERQLASLEEELEKLTEEIS--ELEKRLEEIEQLLEELNKKIKDLGEE---EQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2301 LQ-QEVVSTEQQREGARTLPEDEEsfkhQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECA 2379
Cdd:TIGR02169 306 LErSIAEKERELEDAEERLAKLEA----EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2380 SNEELPSLPKESVHMTVHELGSdnLQPEDAPAQDVTKPLEKQTSLTRLQ-KSPEASRTQ---EIESLASSVGAKDVELTQ 2455
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINE--LKRELDRLQEELQRLSEELADLNAAiAGIEAKINEleeEKEDKALEIKKQEWKLEQ 459
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 125661048 2456 CREQTETIQEQ---AQSETDRLQKKLTDLQRSLEKFAAalvsqvQMEAAQEYVP 2506
Cdd:TIGR02169 460 LAADLSKYEQElydLKEEYDRVEKELSKLQRELAEAEA------QARASEERVR 507
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
250-937 |
2.07e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.73 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 250 KKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEK-------QALIDELNTRVVEEEKKTVELKNKVTTADELLGG 322
Cdd:TIGR00606 279 KQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKerelvdcQRELEKLNKERRLLNQEKTELLVEQGRLQLQADR 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 323 LHEQLTQRNQEIQSLKLELGNSQQNERKCSE-EIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEM 401
Cdd:TIGR00606 359 HQEHIRARDSLIQSLATRLELDGFERGPFSErQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGL 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 402 ygKQIVQMKQELINQHMSQIeelksQHKREMENTLKSDTNAAISKEQvnlmnaainelNVRLQETHAQKEELKGELGVVL 481
Cdd:TIGR00606 439 --GRTIELKKEILEKKQEEL-----KFVIKELQQLEGSSDRILELDQ-----------ELRKAERELSKAEKNSLTETLK 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 482 GEKSALQSQSNDLLEEVRFLREQVqkarqtiaEQENRLSEARKSLSTVEDLKA---EIVAASESRKELELKHEAEITNYK 558
Cdd:TIGR00606 501 KEVKSLQNEKADLDRKLRKLDQEM--------EQLNHHTTTRTQMEMLTKDKMdkdEQIRKIKSRHSDELTSLLGYFPNK 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 559 IKLE----MLEKEKNAVLDRMAESQE--AELERLRTQL---LFSHEEELSKLKEDL-----EVEHRINIEKLKDNLGIHY 624
Cdd:TIGR00606 573 KQLEdwlhSKSKEINQTRDRLAKLNKelASLEQNKNHInneLESKEEQLSSYEDKLfdvcgSQDEESDLERLKEEIEKSS 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 625 KQQ--IDGLQNEMNRKMESMQ------CETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEIL---- 692
Cdd:TIGR00606 653 KQRamLAGATAVYSQFITQLTdenqscCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlgla 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 693 KQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKM---YSPSEQEERSIAVDP 769
Cdd:TIGR00606 733 PGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMerfQMELKDVERKIAQQA 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 770 STSKSADSrwQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRddlEATQTKQALE 849
Cdd:TIGR00606 813 AKLQGSDL--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG---TNLQRRQQFE 887
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 850 YESKLRALEEELLSKrgnpaAPKGKSSGIFPSETLeigevVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTI 929
Cdd:TIGR00606 888 EQLVELSTEVQSLIR-----EIKDAKEQDSPLETF-----LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957
|
....*...
gi 125661048 930 NSLSAEVR 937
Cdd:TIGR00606 958 KDIENKIQ 965
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
253-729 |
2.08e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.59 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 253 EDLQAQISFLQEKLRAFEMEKDRKIENLNAKEiQEKQALIDELNTRVVEEEKKTvELKNKVTTADELLGGLHEQltqrNQ 332
Cdd:PRK01156 200 ENIKKQIADDEKSHSITLKEIERLSIEYNNAM-DDYNNLKSALNELSSLEDMKN-RYESEIKTAESDLSMELEK----NN 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 333 EIQSLKLELGNSQQNE-RKCSEEIKELMRTVEELQkrNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQ-----I 406
Cdd:PRK01156 274 YYKELEERHMKIINDPvYKNRNYINDYFKYKNDIE--NKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKsryddL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 407 VQMKQELINQHM---SQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGE 483
Cdd:PRK01156 352 NNQILELEGYEMdynSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQR 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 484 KSALQSQSNDLLEEVRFLR--------------EQVQKARQTIAEQENRL-SEARKSLSTVEDLKAEIVAASESRKELEL 548
Cdd:PRK01156 432 IRALRENLDELSRNMEMLNgqsvcpvcgttlgeEKSNHIINHYNEKKSRLeEKIREIEIEVKDIDEKIVDLKKRKEYLES 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 549 KHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAEL--ERLRTQLLFSHEEELSKLKED----LEVEHRINIEKL---KDN 619
Cdd:PRK01156 512 EEINKSINEYNKIESARADLEDIKIKINELKDKHDkyEEIKNRYKSLKLEDLDSKRTSwlnaLAVISLIDIETNrsrSNE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 620 LGIHYKQQIDGLqNEMNRKMESMQCETDNLITQ-QNQLILENSKLRDLQeclvnskseEMNLQINELQKEIEILKQEEKE 698
Cdd:PRK01156 592 IKKQLNDLESRL-QEIEIGFPDDKSYIDKSIREiENEANNLNNKYNEIQ---------ENKILIEKLRGKIDNYKKQIAE 661
|
490 500 510
....*....|....*....|....*....|.
gi 125661048 699 KGTLEQEVQELQLKTEQLEKQLKEKEDDLQE 729
Cdd:PRK01156 662 IDSIIPDLKEITSRINDIEDNLKKSRKALDD 692
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2073-2315 |
2.21e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2073 SKEQLQRDIQERNEEIEKLECRVRELEQAllasaepfpkvedqkrsgaveadpELSLEVQLQVERDATDRKQKEITNLEE 2152
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKE------------------------EKALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2153 QLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRlfkdeIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEK 2232
Cdd:COG4942 77 ELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGR-----QPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2233 EIEIDRLNEQFIKLQQQLKLTTD----------------NKVIEEQKEQIQDLETQIERLmserEHEKKQREEEVEQLTG 2296
Cdd:COG4942 152 AEELRADLAELAALRAELEAERAeleallaeleeeraalEALKAERQKLLARLEKELAEL----AAELAELQQEAEELEA 227
|
250
....*....|....*....
gi 125661048 2297 VVEKLQQEVVSTEQQREGA 2315
Cdd:COG4942 228 LIARLEAEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1850-2046 |
2.35e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1850 RAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAE- 1928
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEl 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1929 ------------AGPVE------------------QQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQvsr 1978
Cdd:COG4942 107 aellralyrlgrQPPLAlllspedfldavrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL--- 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 125661048 1979 fieleQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVS 2046
Cdd:COG4942 184 -----EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2005-2181 |
2.37e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2005 EKMRKFLDEQAIDreherdvfqQEIQKLEHQLKAVPRiqpvsehqarEVEQLTNHLKEKTDRCSELLLSKEQLQRDIQER 2084
Cdd:COG1579 4 EDLRALLDLQELD---------SELDRLEHRLKELPA----------ELAELEDELAALEARLEAAKTELEDLEKEIKRL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2085 NEEIEKLECRVRELEQALLA----------SAEpfpkVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQL 2154
Cdd:COG1579 65 ELEIEEVEARIKKYEEQLGNvrnnkeyealQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAEL 140
|
170 180
....*....|....*....|....*..
gi 125661048 2155 EQFREELENKNDEVQELLMQLEIQRKE 2181
Cdd:COG1579 141 EEKKAELDEELAELEAELEELEAEREE 167
|
|
| Seryl_tRNA_N |
pfam02403 |
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA ... |
674-734 |
2.41e-04 |
|
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase.
Pssm-ID: 426757 [Multi-domain] Cd Length: 108 Bit Score: 42.96 E-value: 2.41e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 125661048 674 KSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQL 734
Cdd:pfam02403 44 ELEELQAERNELSKEIGQAKKKKEDADALIAEVKELKDELKALEAELKELEAELDKLLLTI 104
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1814-2356 |
2.47e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1814 KVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQiqEKTDIIEHLEQE 1893
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK--KKADEAKKKAEE 1442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1894 vlcmNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVE 1973
Cdd:PTZ00121 1443 ----AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1974 EQVSRFIELEQEKNAELTDLRQQSQALEKQlEKMRKfldEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREV 2053
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKA-DELKK---AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2054 EQLTNHLKEktdrcsELLLSKEQLQRDIQERN--EEIEKLECRVRELEQALLASAEPFPKVEDQKRsgaveADPELSLEV 2131
Cdd:PTZ00121 1595 EEVMKLYEE------EKKMKAEEAKKAEEAKIkaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK-----AEEENKIKA 1663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2132 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKEsd 2211
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE-- 1741
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2212 svstrdqpmlfgkfaqliQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEV 2291
Cdd:PTZ00121 1742 ------------------DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 2292 EQLTGVVEklqqevvstEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNV 2356
Cdd:PTZ00121 1804 FDNFANII---------EGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
2999-3319 |
2.58e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2999 CSMQQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEA-FRSEVKEKTDEIH 3077
Cdd:pfam05483 164 CARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEeYKKEINDKEKQVS 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3078 FLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQkqllnesQQKIESQKMLH 3157
Cdd:pfam05483 244 LLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSL-------QRSMSTQKALE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3158 D---------AQLSEEQGRNLG-LQALLESEQVRIQEMKSTLDKERELYAQLQSREDGgqpppalpSEDLLKELQKQLEE 3227
Cdd:pfam05483 317 EdlqiatktiCQLTEEKEAQMEeLNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEK--------NEDQLKIITMELQK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3228 KHSRIVELLSETEKYKLDSLQTRQQMEKDrqvhqktlQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGK 3307
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAED--------EKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLT 460
|
330
....*....|..
gi 125661048 3308 RLQGLMQEFQKQ 3319
Cdd:pfam05483 461 AIKTSEEHYLKE 472
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1850-2018 |
2.69e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1850 RAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEA 1929
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQKEIESLKR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1930 gpvEQQFLQETEKLMKEKLEvqcqaekvrgDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRK 2009
Cdd:COG1579 104 ---RISDLEDEILELMERIE----------ELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
....*....
gi 125661048 2010 FLDEQAIDR 2018
Cdd:COG1579 171 KIPPELLAL 179
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2958-3243 |
3.38e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2958 QKADRRSLLAEIEDLRAQINGGKMTLER-EQGTEKSSQELLDCSMQ----QKQSLEMQLELSSLRDRAAELQEQLSSEKM 3032
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRiENRLDELSQELSDASRKigeiEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3033 VVAELKSELAQAKLELGTTLKAQHKRLKELEAF-----RSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHH 3107
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3108 EgREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKS 3187
Cdd:TIGR02169 832 E-KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3188 TLDKERELYAQLQSR----------------EDGGQPPPALPSEDLLKELQK---------------------------- 3223
Cdd:TIGR02169 911 QIEKKRKRLSELKAKlealeeelseiedpkgEDEEIPEEELSLEDVQAELQRveeeiralepvnmlaiqeyeevlkrlde 990
|
330 340
....*....|....*....|....*.
gi 125661048 3224 ------QLEEKHSRIVELLSETEKYK 3243
Cdd:TIGR02169 991 lkekraKLEEERKAILERIEEYEKKK 1016
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
284-542 |
3.70e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 3.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 284 EIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRtve 363
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 364 ELQKRNLKDSWLE--------TSAVRRVEqetqrklshlqaeldemYGKQIVQMKQELINQHMSQIEELKSQHKREMENT 435
Cdd:COG3883 94 ALYRSGGSVSYLDvllgsesfSDFLDRLS-----------------ALSKIADADADLLEELKADKAELEAKKAELEAKL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 436 LKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ 515
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
250 260
....*....|....*....|....*..
gi 125661048 516 ENRLSEARKSLSTVEDLKAEIVAASES 542
Cdd:COG3883 237 AAAAAAAASAAGAGAAGAAGAAAGSAG 263
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1786-2183 |
3.86e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 3.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1786 LNISSRLQAAVEKLLEAISETNTQL--EHAKVTQTELMRESFRQKQEATeslhcLEELRERLQEESRAREQLAEELNKAE 1863
Cdd:pfam01576 365 LEQAKRNKANLEKAKQALESENAELqaELRTLQQAKQDSEHKRKKLEGQ-----LQELQARLSESERQRAELAEKLSKLQ 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1864 SVIDGYS--------------DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEA 1929
Cdd:pfam01576 440 SELESVSsllneaegkniklsKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQL 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1930 GPVEQQfLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKN---AELTDL-------RQQSQA 1999
Cdd:pfam01576 520 STLQAQ-LSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNrlqQELDDLlvdldhqRQLVSN 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2000 LEKQLEKMRKFL-DEQAIDREHERDVFQQEIQKLEHQLKAVPriqpvsehQAREVEQLTNHLKEKTDRCSELLLSKEQLQ 2078
Cdd:pfam01576 599 LEKKQKKFDQMLaEEKAISARYAEERDRAEAEAREKETRALS--------LARALEEALEAKEELERTNKQLRAEMEDLV 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2079 RDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRsgaVEADPELSLEVQLQVERDATDRkqkEITNLEEQLEQFR 2158
Cdd:pfam01576 671 SSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQ---ATEDAKLRLEVNMQALKAQFER---DLQARDEQGEEKR 744
|
410 420
....*....|....*....|....*
gi 125661048 2159 EELenkNDEVQELLMQLEIQRKEST 2183
Cdd:pfam01576 745 RQL---VKQVRELEAELEDERKQRA 766
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1902-2205 |
4.00e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1902 QELESDQRRVEE----ERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKlevqcQAEKVRGDLQKQVKALEIDVEEQVS 1977
Cdd:pfam12128 600 EELRERLDKAEEalqsAREKQAAAEEQLVQANGELEKASREETFARTALK-----NARLDLRRLFDEKQSEKDKKNKALA 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1978 RFIeleQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAidREHeRDVFQQEIQKLEHQLKAvpRIQPVSEHQAREVEQLT 2057
Cdd:pfam12128 675 ERK---DSANERLNSLEAQLKQLDKKHQAWLEEQKEQK--REA-RTEKQAYWQVVEGALDA--QLALLKAAIAARRSGAK 746
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2058 NHLKE-KTDRCSELLlskeqlQRDIQErnEEIEKLECRVRELEQallasaepfpKVEDQKRSGAVEADPELSLEVQLQVE 2136
Cdd:pfam12128 747 AELKAlETWYKRDLA------SLGVDP--DVIAKLKREIRTLER----------KIERIAVRRQEVLRYFDWYQETWLQR 808
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 125661048 2137 RDatdRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGF 2205
Cdd:pfam12128 809 RP---RLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLAT 874
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
118-616 |
4.39e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 118 AQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLtanlqqarREKDDTMVEFL 197
Cdd:PRK02224 232 ARETRDEADEVLEEHEERREELETLEAEIEDLRETI-AETEREREELAEEVRDLRERLEEL--------EEERDDLLAEA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 198 ELTEQSQK-LQIQFQHLQANETLQNSTLSRTATDLLQAKRQIftqqqqlQDYQKKEEDLQAQISFLQEKLRAFEmekdrk 276
Cdd:PRK02224 303 GLDDADAEaVEARREELEDRDEELRDRLEECRVAAQAHNEEA-------ESLREDADDLEERAEELREEAAELE------ 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 277 ienlnaKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGL---HEQLTQRNQEIQSLKLELGNSQQNERKCSE 353
Cdd:PRK02224 370 ------SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAedfLEELREERDELREREAELEATLRTARERVE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 354 EIKELMrtveELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEmygkqiVQMKQELINQHMSQIEELKSQHKReme 433
Cdd:PRK02224 444 EAEALL----EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELED------LEEEVEEVEERLERAEDLVEAEDR--- 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 434 nTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFL----------RE 503
Cdd:PRK02224 511 -IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELnsklaelkerIE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 504 QVQKARQTIAEQEN------RLSEARKSLSTVEDLKAEIVAA-SESRKELELKHEAE---------------ITNYKIKL 561
Cdd:PRK02224 590 SLERIRTLLAAIADaedeieRLREKREALAELNDERRERLAEkRERKRELEAEFDEArieearedkeraeeyLEQVEEKL 669
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 562 EMLEKEKNAVLDR--MAESQEAELERLRTQL------------LFSHEEELSKLKEDLEVEHRI-NIEKL 616
Cdd:PRK02224 670 DELREERDDLQAEigAVENELEELEELRERRealenrvealeaLYDEAEELESMYGDLRAELRQrNVETL 739
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
317-578 |
5.01e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 5.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 317 DELLGGLHE----QLTQRNQEIQSLKLElgnsqqNERKCSEEIKELMRTVEE-LQKRNLKDSWLETSAVRRVE---QETQ 388
Cdd:PRK05771 19 DEVLEALHElgvvHIEDLKEELSNERLR------KLRSLLTKLSEALDKLRSyLPKLNPLREEKKKVSVKSLEeliKDVE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 389 RKLSHLQAELDEMyGKQIVQMKQEL--INQHMSQIEELKS-----QHKREMENTLKSDtnAAISKEQVNLMNAAINELNV 461
Cdd:PRK05771 93 EELEKIEKEIKEL-EEEISELENEIkeLEQEIERLEPWGNfdldlSLLLGFKYVSVFV--GTVPEDKLEELKLESDVENV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 462 RLqethaqKEELKGELGVVL-GEKSALQSQSnDLLEEVRFLREQVQ---KARQTIAEQENRLSEarkslstvedLKAEIV 537
Cdd:PRK05771 170 EY------ISTDKGYVYVVVvVLKELSDEVE-EELKKLGFERLELEeegTPSELIREIKEELEE----------IEKERE 232
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 125661048 538 AASESRKELELKHEAEITNYKIKLEMlEKEKNAVLDRMAES 578
Cdd:PRK05771 233 SLLEELKELAKKYLEELLALYEYLEI-ELERAEALSKFLKT 272
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
405-622 |
5.05e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 5.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 405 QIVQMKQELINQhmsqieELKSQHKreMENTLKSDTNAAISKEQ------VNLMN---AAINELNVRLQETHAQKEELKG 475
Cdd:PHA02562 184 QTLDMKIDHIQQ------QIKTYNK--NIEEQRKKNGENIARKQnkydelVEEAKtikAEIEELTDELLNLVMDIEDPSA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 476 ELGVVLGEKSALQSQSNDLLEEVRFLRE--QVQKARQTIAEQENRLSEARKSLSTV----EDLKAEIVAASE-------- 541
Cdd:PHA02562 256 ALNKLNTAAAKIKSKIEQFQKVIKMYEKggVCPTCTQQISEGPDRITKIKDKLKELqhslEKLDTAIDELEEimdefneq 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 542 SRKELELKHEAEITNYKIKLEmlekeknavlDRMAESQEAELERLRTQLLfSHEEELSKLKEDLE--VEHRINIEKLKDN 619
Cdd:PHA02562 336 SKKLLELKNKISTNKQSLITL----------VDKAKKVKAAIEELQAEFV-DNAEELAKLQDELDkiVKTKSELVKEKYH 404
|
...
gi 125661048 620 LGI 622
Cdd:PHA02562 405 RGI 407
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2150-2361 |
5.09e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 5.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2150 LEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLF----------------KDEIEKLGFAMKESDSV 2213
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVdlseeaklllqqlselESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2214 STRDQPMLFGKFAQLIQEKEI-EIDRLNEQFIKLQQQL-----KLTTDNKVIEEQKEQIQDLETQIERlmsEREHEKKQR 2287
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSpVIQQLRAQLAELEAELaelsaRYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASL 318
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 125661048 2288 EEEVEQLTGVVEKLQQEVvstEQQREGARTLPEDEesfkhqldkvtAEKLVLEQQVETTNQVMTHMNNVLKEIN 2361
Cdd:COG3206 319 EAELEALQAREASLQAQL---AQLEARLAELPELE-----------AELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2158-2503 |
5.10e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 5.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2158 REELENKNDEVQELLMQLEIQRKESTTRLQELQQE-----------NRLFKDEIEKLGFAMKESDSVSTRDQpmlfgkfa 2226
Cdd:COG1196 174 KEEAERKLEATEENLERLEDILGELERQLEPLERQaekaeryrelkEELKELEAELLLLKLRELEAELEELE-------- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2227 QLIQEKEIEIDRLNEQFIKLQQQL-----KLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLtgvvEKL 2301
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELeelrlELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL----EEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2302 QQEVVSTEQQREGARTlpedeesfkhQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECASN 2381
Cdd:COG1196 322 EEELAELEEELEELEE----------ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2382 EElpslpkesvhmTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSPEASRTQEIESLASSVGAKDVELTQCREQTE 2461
Cdd:COG1196 392 LR-----------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 125661048 2462 TIQ--EQAQSETDRLQKKLTDLQRSLEKFAAALVSQVQMEAAQE 2503
Cdd:COG1196 461 LLEllAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
218-728 |
5.15e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 5.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 218 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKE-EDLQAQISFLQEKLRAFEMEKDRKIENlnAKEIQEKQALIDELN 296
Cdd:COG4717 38 TLLAFIRAMLLERLEKEADELFKPQGRKPELNLKElKELEEELKEAEEKEEEYAELQEELEEL--EEELEELEAELEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 297 TRV--VEEEKKTVELKNKVTTADELLGGLH---EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLK 371
Cdd:COG4717 116 EELekLEKLLQLLPLYQELEALEAELAELPerlEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 372 DSWLETSAVRRVEQETQRKLSHLQAELDemygkqivqmkqelinQHMSQIEELKSQHKREMENTLKSDTNAAIskeqvnL 451
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELE----------------ELEEELEQLENELEAAALEERLKEARLLL------L 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 452 MNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVED 531
Cdd:COG4717 254 IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPD 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 532 LKAEIVAASESRKE--LELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL--LFSHEEELSKLKEDLEV 607
Cdd:COG4717 334 LSPEELLELLDRIEelQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAeeYQELKEELEELEEQLEE 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 608 EHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMEsmqcETDNLITQQNQLILENSKLRDLQEclvnskseemnlqINELQK 687
Cdd:COG4717 414 LLGELEELLEALDEEELEEELEELEEELEELEE----ELEELREELAELEAELEQLEEDGE-------------LAELLQ 476
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 125661048 688 EIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKEDDLQ 728
Cdd:COG4717 477 ELEELKAELRE---LAEEWAALKLALELLEEAREEYREERL 514
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
262-844 |
5.83e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 5.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 262 LQEKLRAFEMEKDRKIENLN-AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTT-ADELLGGLH--EQLTQRNQEIQSL 337
Cdd:TIGR01612 1089 IKEKLKHYNFDDFGKEENIKyADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENyIDEIKAQINdlEDVADKAISNDDP 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 338 KlELGNSQQN-------ERKCSEEIKELMRTVEELQK--------RNLKDSW---LETSAVRRVEQETQRKLSHLQAEld 399
Cdd:TIGR01612 1169 E-EIEKKIENivtkidkKKNIYDEIKKLLNEIAEIEKdktsleevKGINLSYgknLGKLFLEKIDEEKKKSEHMIKAM-- 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 400 EMYGKQIVQMKQEliNQHMSQIEELKSQHKREME--NTLKSDTNAAISKEQVNLMNAA-INELNVRLQETHAQKE---EL 473
Cdd:TIGR01612 1246 EAYIEDLDEIKEK--SPEIENEMGIEMDIKAEMEtfNISHDDDKDHHIISKKHDENISdIREKSLKIIEDFSEESdinDI 1323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 474 KGELGVVLGEKSALQSQSNDLLEEVRFLRE-----QVQKARQTIAEQENRLSEARKS----LSTVEDLKAEIVAASeSRK 544
Cdd:TIGR01612 1324 KKELQKNLLDAQKHNSDINLYLNEIANIYNilklnKIKKIIDEVKEYTKEIEENNKNikdeLDKSEKLIKKIKDDI-NLE 1402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 545 ELELKHEAEITNYKIK--LEMLEKEKNAVLDRMAES----QEAELERLRTQLLFSHEEE--------LSKLKEDLEVEHR 610
Cdd:TIGR01612 1403 ECKSKIESTLDDKDIDecIKKIKELKNHILSEESNIdtyfKNADENNENVLLLFKNIEMadnksqhiLKIKKDNATNDHD 1482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 611 INIEKLKDNL--GIHYKQQID--GLQNEMNRKM-ESMQCETDNLITQQNQLILEN--SKLRDLQECLVNSKSEEMNLQIN 683
Cdd:TIGR01612 1483 FNINELKEHIdkSKGCKDEADknAKAIEKNKELfEQYKKDVTELLNKYSALAIKNkfAKTKKDSEIIIKEIKDAHKKFIL 1562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 684 ELQKEIEILKQEEKEKGTLEQEVQE----------LQLKTEQLEKQLKeKEDDLQEKCaqldaeNNILKEEKRVlEDKLK 753
Cdd:TIGR01612 1563 EAEKSEQKIKEIKKEKFRIEDDAAKndksnkaaidIQLSLENFENKFL-KISDIKKKI------NDCLKETESI-EKKIS 1634
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 754 MYSPSEQE-ERSIAVDPSTSKSAdsrWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCL 832
Cdd:TIGR01612 1635 SFSIDSQDtELKENGDNLNSLQE---FLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIA 1711
|
650
....*....|..
gi 125661048 833 LKirDDLEATQT 844
Cdd:TIGR01612 1712 NK--EEIESIKE 1721
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
129-560 |
6.28e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 6.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 129 EKELAEKQHDIEELTQELEEMRAsfgtEGLKQLQEFEAAIKQRdgiitqltaNLQQARREKDDtmvEFLELTEQSQKLQI 208
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKKKA----DELKKAEELKKAEEKK---------KAEEAKKAEED---KNMALRKAEEAKKA 1589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 209 QFQHLQANETLQNSTLSRTATDLLQAKRQiftqqQQLQDYQKKEEDLQAQIsflqEKLRAFEMEKDRKIENLNaKEIQEK 288
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEA-----KIKAEELKKAEEEKKKV----EQLKKKEAEEKKKAEELK-KAEEEN 1659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 289 QALIDELNTRVVEEEKKTVELKNkvttADELLGGLHEQLTQRNQEIQSLKlELGNSQQNERKCSEEIK----ELMRTVEE 364
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKKAEEAKK----AEEDEKKAAEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKkaeeENKIKAEE 1734
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 365 LQKRNLKDSWLETSAvrRVEQETQRKLSHLQAElDEMYGKQIVQMKQELINQhmsQIEELKSQHKREMENTLK-SDTNAA 443
Cdd:PTZ00121 1735 AKKEAEEDKKKAEEA--KKDEEEKKKIAHLKKE-EEKKAEEIRKEKEAVIEE---ELDEEDEKRRMEVDKKIKdIFDNFA 1808
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 444 ISKEQVNLMNAAINElnvrlqethaQKEELKGELGVVLgeksalqSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEAR 523
Cdd:PTZ00121 1809 NIIEGGKEGNLVIND----------SKEMEDSAIKEVA-------DSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFN 1871
|
410 420 430
....*....|....*....|....*....|....*..
gi 125661048 524 KSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIK 560
Cdd:PTZ00121 1872 KEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMA 1908
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
2138-2367 |
6.35e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 45.62 E-value: 6.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2138 DATDRKQKEITNLEEQLEQFREELENKN--------DEVQELLMQLEIQRKESTTRLQELQQEnrlFKDEIEKLGFAMKE 2209
Cdd:pfam06160 146 PAIDELEKQLAEIEEEFSQFEELTESGDylearevlEKLEEETDALEELMEDIPPLYEELKTE---LPDQLEELKEGYRE 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2210 sdsvstrdqpMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTdnkvIEEQKEQIQDLETQIERLMSEREHEKKQREE 2289
Cdd:pfam06160 223 ----------MEEEGYALEHLNVDKEIQQLEEQLEENLALLENLE----LDEAEEALEEIEERIDQLYDLLEKEVDAKKY 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2290 EVEQLTGVVEKLQQ-EVVSTEQQREGAR-----TLPEDE----ESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKE 2359
Cdd:pfam06160 289 VEKNLPEIEDYLEHaEEQNKELKEELERvqqsyTLNENElervRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEE 368
|
....*...
gi 125661048 2360 INFKMDQI 2367
Cdd:pfam06160 369 ILEQLEEI 376
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1758-2171 |
6.48e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1758 EEGAELSQRLVRSGFAgpviDPENEELMLNISSrLQAAVEKLLEAISETNTQLEHAKvTQTELMRESFRQKQEATESLHC 1837
Cdd:PRK02224 290 ELEEERDDLLAEAGLD----DADAEAVEARREE-LEDRDEELRDRLEECRVAAQAHN-EEAESLREDADDLEERAEELRE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1838 LEELRERLQEESR-AREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQR----RVE 1912
Cdd:PRK02224 364 EAAELESELEEAReAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRtareRVE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1913 EERQLL-----------------------CRQR-EAMRAEAGPVEQQFLQETEKLmkEKLEVQCQAEKVRGDLQKQVKAL 1968
Cdd:PRK02224 444 EAEALLeagkcpecgqpvegsphvetieeDRERvEELEAELEDLEEEVEEVEERL--ERAEDLVEAEDRIERLEERREDL 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1969 EIDVEEQVSRfIELEQEKNAELtdlRQQSQALEKQLEKMRkfldEQAIDREHERDVFQQEIQKLEHQLKAVP-RIQpvse 2047
Cdd:PRK02224 522 EELIAERRET-IEEKRERAEEL---RERAAELEAEAEEKR----EAAAEAEEEAEEAREEVAELNSKLAELKeRIE---- 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2048 hQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAepfpkVED--QKRSGAVEADP 2125
Cdd:PRK02224 590 -SLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR-----IEEarEDKERAEEYLE 663
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 125661048 2126 ELslEVQLQVERDATDRKQKEITNLE---EQLEQFREELENKNDEVQEL 2171
Cdd:PRK02224 664 QV--EEKLDELREERDDLQAEIGAVEnelEELEELRERREALENRVEAL 710
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
676-970 |
6.55e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.66 E-value: 6.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 676 EEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDaENNILKEEKRVLEDKLKM- 754
Cdd:PRK01156 190 EKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLED-MKNRYESEIKTAESDLSMe 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 755 ------YSPSEQEERSIAVDPSTSKSADSRwqkEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAE--KNFEVNYQELQ 826
Cdd:PRK01156 269 leknnyYKELEERHMKIINDPVYKNRNYIN---DYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSvlQKDYNDYIKKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 827 REYTCLLKIRDDLEATQTKqaleYESKLRALEEelLSKRGNPAAPKGKSSGIFPSETLEIGEVvekDTTELMEKLEVTKR 906
Cdd:PRK01156 346 SRYDDLNNQILELEGYEMD----YNSYLKSIES--LKKKIEEYSKNIERMSAFISEILKIQEI---DPDAIKKELNEINV 416
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 125661048 907 EKLELSEKVSglseqlkqthctinSLSAEVRALKQEKEqlllrcgelELLANPSGTENAAVCPV 970
Cdd:PRK01156 417 KLQDISSKVS--------------SLNQRIRALRENLD---------ELSRNMEMLNGQSVCPV 457
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
453-864 |
7.11e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 7.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 453 NAAINELNVRLQETHAQKEELKGELGVVLGEKSALqsqsnDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDL 532
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKL-----EKLLQLLPLYQELEALEAELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 533 KAEIVAASESRKELE-----------LKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEaELERLRTQLlfsheEELSKL 601
Cdd:COG4717 162 EEELEELEAELAELQeeleelleqlsLATEEELQDLAEELEELQQRLAELEEELEEAQE-ELEELEEEL-----EQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 602 KEDLEVEHRINIEKL-------------KDNLGIHYKQQIDGLQ-----------NEMNRKMESMQCETDNLITQQNQLI 657
Cdd:COG4717 236 LEAAALEERLKEARLllliaaallallgLGGSLLSLILTIAGVLflvlgllallfLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 658 LENSKLRDLQECLVNSKSEEmNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQ---LEKQLKEKEDDLQEKCAQL 734
Cdd:COG4717 316 LEEEELEELLAALGLPPDLS-PEELLELLDRIEELQELLREAEELEEELQLEELEQEIaalLAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 735 DAENNiLKEEKRVLEDKLKMYSPSEQEERSiAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFA 814
Cdd:COG4717 395 EEYQE-LKEELEELEEQLEELLGELEELLE-ALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 815 EKNFEVNY-----QELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSK 864
Cdd:COG4717 473 ELLQELEElkaelRELAEEWAALKLALELLEEAREEYREERLPPVLERASEYFSR 527
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1982-2203 |
8.91e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 8.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1982 LEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQaidrEHERDVFQQEIQklehqlkavprIQPVSEHQAREVEQLTnhlk 2061
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEA----EAALEEFRQKNG-----------LVDLSEEAKLLLQQLS---- 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2062 ektdrcselllskeQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpELSLEVQLQVERDATD 2141
Cdd:COG3206 223 --------------ELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQ-LAELEAELAELSARYT 287
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 125661048 2142 RKQKEITNLEEQLEQFREELENkndEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKL 2203
Cdd:COG3206 288 PNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
119-810 |
9.56e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 9.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 119 QSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQ---QARREKDDTMVE 195
Cdd:TIGR00606 230 EAQLESSREIVKSYENELDPLKNRLKEIEHNLSKI-MKLDNEIKALKSRKKQMEKDNSELELKMEkvfQGTDEQLNDLYH 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 196 FLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDR 275
Cdd:TIGR00606 309 NHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFS 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 276 KIENLNA----KEIQEKQA-----LIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQ 346
Cdd:TIGR00606 389 ERQIKNFhtlvIERQEDEAktaaqLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 347 NERKCSEEIKELMRTVEELQK----RNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMS--- 419
Cdd:TIGR00606 469 SSDRILELDQELRKAERELSKaeknSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMdkd 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 420 -QIEELKSQHKREMENTLK--------SDTNAAISKEqVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQ 490
Cdd:TIGR00606 549 eQIRKIKSRHSDELTSLLGyfpnkkqlEDWLHSKSKE-INQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDK 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 491 ------SNDLLEEVRFLREQVQKAR--------------QTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKH 550
Cdd:TIGR00606 628 lfdvcgSQDEESDLERLKEEIEKSSkqramlagatavysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLA 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 551 EAEITNYKIKLEMLEKEKNAVLDrMAESQEAELERLrtqllfshEEELSKLKEDLEVEHRiNIEKLKDNLGIHYKQqidg 630
Cdd:TIGR00606 708 PDKLKSTESELKKKEKRRDEMLG-LAPGRQSIIDLK--------EKEIPELRNKLQKVNR-DIQRLKNDIEEQETL---- 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 631 LQNEMNRKMESMQCETDNLITQQNQLILENSKlRDLQECLVNSKSEEMNLQINELQKEIEilkQEEKEKGTLEQEVQELQ 710
Cdd:TIGR00606 774 LGTIMPEEESAKVCLTDVTIMERFQMELKDVE-RKIAQQAAKLQGSDLDRTVQQVNQEKQ---EKQHELDTVVSKIELNR 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 711 LKTEqlekqlkekedDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKET 790
Cdd:TIGR00606 850 KLIQ-----------DQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918
|
730 740
....*....|....*....|
gi 125661048 791 EDLQQQclylNEEIEKQRNT 810
Cdd:TIGR00606 919 EKDQQE----KEELISSKET 934
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
634-946 |
1.12e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 634 EMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKT 713
Cdd:TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 714 EQLEKQLKEKEDDLQEKCAQLDAENNilKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDL 793
Cdd:TIGR02169 261 SELEKRLEEIEQLLEELNKKIKDLGE--EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 794 QQqclyLNEEIEKQRntfafaeknfeVNYQELQREYTCLLKIRDDLEAtqtkQALEYESKLRALEEELLSKRgnpaapkg 873
Cdd:TIGR02169 339 EE----LEREIEEER-----------KRRDKLTEEYAELKEELEDLRA----ELEEVDKEFAETRDELKDYR-------- 391
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 125661048 874 kssgifpsetleigevvekdttelmEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQL 946
Cdd:TIGR02169 392 -------------------------EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1849-2063 |
1.22e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1849 SRAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAE 1928
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1929 agpveqqfLQETEKLMKEKLEVQCQAEKVR-----------GDLQKQVKALEIDVEEQVSRFIELEQEKnAELTDLRQQS 1997
Cdd:COG4942 99 --------LEAQKEELAELLRALYRLGRQPplalllspedfLDAVRRLQYLKYLAPARREQAEELRADL-AELAALRAEL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 125661048 1998 QALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEK 2063
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2232-2584 |
1.55e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2232 KEIEIDRLNEQFIKLQQ-QLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQ 2310
Cdd:COG1196 220 EELKELEAELLLLKLRElEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2311 QREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECASNEELpslpKE 2390
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE----LA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2391 SVHMTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSpEASRTQEIESLASSVGAKDVELTQCREQTETIQE---QA 2467
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER-LERLEEELEELEEALAELEEEEEEEEEALEEAAEeeaEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2468 QSETDRLQKKLTDLQRSLEKFAAALVSQVQMEAAQEYVPFHQEKQPVSSAPGSTDIQNANGLTGAsteSLIPTVTLRLAE 2547
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL---RGLAGAVAVLIG 531
|
330 340 350
....*....|....*....|....*....|....*..
gi 125661048 2548 VESRVAEVHSGTMSEKLVGIVGGNAsETEKRVIELQK 2584
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDD-EVAAAAIEYLK 567
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
1929-2287 |
1.57e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.90 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1929 AGPVEQQfLQETEKLMKEKLEVQCQAEKVR---GDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLE 2005
Cdd:pfam19220 33 IEPIEAI-LRELPQAKSRLLELEALLAQERaayGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2006 KMRkflDEQAIDREHERDVFQ--QEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSElllSKEQLQRDIQE 2083
Cdd:pfam19220 112 ELR---DKTAQAEALERQLAAetEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQ---ENRRLQALSEE 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2084 RNEEIEKLECRVRELEQALLASAEPFPKVEDQ---KRSGAVEADPELSLEV-QLQVERDATDRKQKEITN----LEEQLE 2155
Cdd:pfam19220 186 QAAELAELTRRLAELETQLDATRARLRALEGQlaaEQAERERAEAQLEEAVeAHRAERASLRMKLEALTAraaaTEQLLA 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2156 QFREELENKNDEVQEL---LMQLEIQRKESTTRLQELQQENrlfKDEIEKLGFAMKESDSVSTRDqpmlfGKFAQLIQEK 2232
Cdd:pfam19220 266 EARNQLRDRDEAIRAAerrLKEASIERDTLERRLAGLEADL---ERRTQQFQEMQRARAELEERA-----EMLTKALAAK 337
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 2233 EIEIDRLNEQFIKLQQQLKLTTDnkvieEQKEQIQDLETQIERLMSEREHEKKQR 2287
Cdd:pfam19220 338 DAALERAEERIASLSDRIAELTK-----RFEVERAALEQANRRLKEELQRERAER 387
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2071-2366 |
1.61e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2071 LLSKEQLQRDIQERN--EEIEKLEC-RVRELEQALLASAEPFPKVEDQKRSGAVEADPELSleVQLQVERDATDRkqkei 2147
Cdd:pfam17380 274 LLHIVQHQKAVSERQqqEKFEKMEQeRLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAA--IYAEQERMAMER----- 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2148 tnlEEQLEQFR-EELENKNDEVQELLMQLEIQRKESTTRLQ-ELQQENRLFKDEIEklgfamkesdsvSTRDQPMLFGKF 2225
Cdd:pfam17380 347 ---ERELERIRqEERKRELERIRQEEIAMEISRMRELERLQmERQQKNERVRQELE------------AARKVKILEEER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2226 AQLIQEKEIEIDRLneqfiklqqqlklttdnkvieeQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEv 2305
Cdd:pfam17380 412 QRKIQQQKVEMEQI----------------------RAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ- 468
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 125661048 2306 vstEQQREGARTLPEDEESFKHQLDKVtaEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQ 2366
Cdd:pfam17380 469 ---EEERKRKKLELEKEKRDRKRAEEQ--RRKILEKELEERKQAMIEEERKRKLLEKEMEE 524
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
128-704 |
1.67e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.51 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 128 VEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQ 207
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSH-SITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 208 IQfqhLQANETLQNST--LSRTATDLLQAKRQ----IFTQQQQLQDYQKKEEDLQAQISFLQEKLR-AFEMEKDRkienl 280
Cdd:PRK01156 267 ME---LEKNNYYKELEerHMKIINDPVYKNRNyindYFKYKNDIENKKQILSNIDAEINKYHAIIKkLSVLQKDY----- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 281 naKEIQEKQALIDELNTRVVEeekktvelknkvttadelLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMR 360
Cdd:PRK01156 339 --NDYIKKKSRYDDLNNQILE------------------LEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 361 ----TVEELQKRnlkdswleTSAVRRVEQETQRKLSHLQAELDEMYGKQI-VQMKQELINQHM------SQIEELKSQHK 429
Cdd:PRK01156 399 iqeiDPDAIKKE--------LNEINVKLQDISSKVSSLNQRIRALRENLDeLSRNMEMLNGQSvcpvcgTTLGEEKSNHI 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 430 REMENtlksdtnaaiskEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKAR 509
Cdd:PRK01156 471 INHYN------------EKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKI 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 510 QTIAEQENRLSEARKSLST--VEDLKAEivaASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAE--SQEAELER 585
Cdd:PRK01156 539 NELKDKHDKYEEIKNRYKSlkLEDLDSK---RTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEieIGFPDDKS 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 586 LRTQLLFSHEEELSKL--KEDLEVEHRINIEKLKDNLGiHYKQQIDGL------QNEMNRKMESMQCETDNLITQQNQLI 657
Cdd:PRK01156 616 YIDKSIREIENEANNLnnKYNEIQENKILIEKLRGKID-NYKKQIAEIdsiipdLKEITSRINDIEDNLKKSRKALDDAK 694
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 125661048 658 LENSKLRDLQECLVnSKSEEMNLQINELQKEIEILKQEEKEKGTLEQ 704
Cdd:PRK01156 695 ANRARLESTIEILR-TRINELSDRINDINETLESMKKIKKAIGDLKR 740
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
273-709 |
1.77e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 273 KDRKIENLNAKE---IQEKQALIDELNTRVVEEEKKTVELKNKVTTADEllggLHEQLTQRNQEIQSLKLELGNSQQNER 349
Cdd:COG5022 848 IQKFGRSLKAKKrfsLLKKETIYLQSAQRVELAERQLQELKIDVKSISS----LKLVNLELESEIIELKKSLSSDLIENL 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 350 KC-SEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYgkqivQMKQELINQHMSQIEELKsQH 428
Cdd:COG5022 924 EFkTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLL-----KKSTILVREGNKANSELK-NF 997
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 429 KREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGvvlgeksaLQSQSNDLLEEVRFLREQVqKA 508
Cdd:COG5022 998 KKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKP--------LQKLKGLLLLENNQLQARY-KA 1068
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 509 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNyKIKLEMLekeKNAVLDRMAESQEAELERLR- 587
Cdd:COG5022 1069 LKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQ-FIVAQMI---KLNLLQEISKFLSQLVNTLEp 1144
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 588 -TQLLFSHEEELSKLKEDLEVEHRINIEKLKDNLGIH------YKQQIDGLQNEMNRKMESMQCETD------------- 647
Cdd:COG5022 1145 vFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRlyqsalYDEKSKLSSSEVNDLKNELIALFSkifsgwprgdklk 1224
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 125661048 648 ------NLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILK-QEEKEKGTLEQEVQEL 709
Cdd:COG5022 1225 klisegWVPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKlEEEVLPATINSLLQYI 1293
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1876-2468 |
1.95e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1876 FERQIQEKTDIIEHleqevlcmNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAE 1955
Cdd:pfam05483 136 LEEEIQENKDLIKE--------NNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAE 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1956 KVRGDLQKQVKaleidveEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQ 2035
Cdd:pfam05483 208 NARLEMHFKLK-------EDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQ 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2036 LKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIE------------------KLECRVRE 2097
Cdd:pfam05483 281 DENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEaqmeelnkakaahsfvvtEFEATTCS 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2098 LEQALLASAEPFPKVED---------QKRSGAVE--------------------ADPELSLEVQLQVERDATDRK----- 2143
Cdd:pfam05483 361 LEELLRTEQQRLEKNEDqlkiitmelQKKSSELEemtkfknnkeveleelkkilAEDEKLLDEKKQFEKIAEELKgkeqe 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2144 --------QKEITNLEEQLEQFREELENKNDEVQELLMQLE---IQRKESTTRLQELQQENRLFKDEIEKLGFAMK--ES 2210
Cdd:pfam05483 441 lifllqarEKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEkekLKNIELTAHCDKLLLENKELTQEASDMTLELKkhQE 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2211 DSVSTRDQPMLFGKFAQLIQEKEI----EIDRLNEQFIKLQQQLKLTTDNKviEEQKEQIQDLETQIERLMSEREHEKKQ 2286
Cdd:pfam05483 521 DIINCKKQEERMLKQIENLEEKEMnlrdELESVREEFIQKGDEVKCKLDKS--EENARSIEYEVLKKEKQMKILENKCNN 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2287 REEEVEQLTGVVEKLQQEvvsteqqregARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHM-NNVLKEINFKMD 2365
Cdd:pfam05483 599 LKKQIENKNKNIEELHQE----------NKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIiDNYQKEIEDKKI 668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2366 QITQSLCNLNKECASNEELPSLPKESVHMTVHELGSDNLQPEDAPAQdVTKPLEKQTSLTRLQKSPEASRTQEIESLASS 2445
Cdd:pfam05483 669 SEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQ-YDKIIEERDSELGLYKNKEQEQSSAKAALEIE 747
|
650 660
....*....|....*....|...
gi 125661048 2446 VGAKDVELTQCREQTETIQEQAQ 2468
Cdd:pfam05483 748 LSNIKAELLSLKKQLEIEKEEKE 770
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1953-2191 |
2.12e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1953 QAEKVrGDLQKQVKALEIDVEEQVsrfiELEQEKNAELTDLRQQSQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEI 2029
Cdd:COG3096 345 QQEKI-ERYQEDLEELTERLEEQE----EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyQQALDVQQTRAIqYQQAV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2030 QKLE--HQLKAVPRIQP------VSEHQAREvEQLTNHLKEKTDRCSELLLSKEQLQRDIQ---------ERNEEIEK-- 2090
Cdd:COG3096 420 QALEkaRALCGLPDLTPenaedyLAAFRAKE-QQATEEVLELEQKLSVADAARRQFEKAYElvckiagevERSQAWQTar 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2091 -LECRVRELeQALLASAEPFpkvedqkrsGAVEADPELSLEVQLQVERDATDRKQK---------EITNLEEQLEQFREE 2160
Cdd:COG3096 499 eLLRRYRSQ-QALAQRLQQL---------RAQLAELEQRLRQQQNAERLLEEFCQRigqqldaaeELEELLAELEAQLEE 568
|
250 260 270
....*....|....*....|....*....|.
gi 125661048 2161 LENKNDEVQELLMQLEIQRKESTTRLQELQQ 2191
Cdd:COG3096 569 LEEQAAEAVEQRSELRQQLEQLRARIKELAA 599
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
483-710 |
2.19e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 483 EKSALQS---QSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLstvEDLKAEivAASESRKELElkheaeitnyKI 559
Cdd:PRK11281 57 EDKLVQQdleQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAEL---EALKDD--NDEETRETLS----------TL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 560 KLEMLEKEKNAVLDRMAESQEA------ELERLRTQLlfshEEELSKLKEDLEvehRIN-IEKLKDNLGIHYKQQIDGLQ 632
Cdd:PRK11281 122 SLRQLESRLAQTLDQLQNAQNDlaeynsQLVSLQTQP----ERAQAALYANSQ---RLQqIRNLLKGGKVGGKALRPSQR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 633 NEMNRKMESMqcetdNLITQQNQLILE-NSKLRDLqeclVNSKSEEMNLQINELQKEIEILkQE---EKEKGTLEQEVQE 708
Cdd:PRK11281 195 VLLQAEQALL-----NAQNDLQRKSLEgNTQLQDL----LQKQRDYLTARIQRLEHQLQLL-QEainSKRLTLSEKTVQE 264
|
..
gi 125661048 709 LQ 710
Cdd:PRK11281 265 AQ 266
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2989-3324 |
2.20e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2989 TEKSSQelldcSMQQKQSLEMQLEL--SSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRL----KEL 3062
Cdd:pfam15921 284 TEKASS-----ARSQANSIQSQLEIiqEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLvlanSEL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3063 EAFRSEVKEKTDEIHFLSDTLAR--EQKNSLELQWALEKEK-ARSGHHEGREKEELEDLKFSLEDqkrRNTQLNLLLEQQ 3139
Cdd:pfam15921 359 TEARTERDQFSQESGNLDDQLQKllADLHKREKELSLEKEQnKRLWDRDTGNSITIDHLRRELDD---RNMEVQRLEALL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3140 KQLLNESQQKIESqkmlhdaQLSEEQGRNLGLQAlLESEQVRIQEMKSTLDK-ERELYAQLQSREDGGQPPPALPSEdlL 3218
Cdd:pfam15921 436 KAMKSECQGQMER-------QMAAIQGKNESLEK-VSSLTAQLESTKEMLRKvVEELTAKKMTLESSERTVSDLTAS--L 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3219 KELQKQLEEKHSRIVELLSETEkYKLDSLQTRqqmeKDRQVHQKTLQTEQEANtqgQKKMQELQSKVEELQRQLQEKRQQ 3298
Cdd:pfam15921 506 QEKERAIEATNAEITKLRSRVD-LKLQELQHL----KNEGDHLRNVQTECEAL---KLQMAEKDKVIEILRQQIENMTQL 577
|
330 340
....*....|....*....|....*.
gi 125661048 3299 VYkldlEGKRLQGLMQeFQKQELEPE 3324
Cdd:pfam15921 578 VG----QHGRTAGAMQ-VEKAQLEKE 598
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1902-2276 |
2.24e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1902 QELESDQRRVEEERQLL---CRQREAMRAEAGPVEQQFLQETEKL--MKEKLEVQCQAEKVRGDLQKqvkaLEIDVEEQV 1976
Cdd:PRK04863 293 RELYTSRRQLAAEQYRLvemARELAELNEAESDLEQDYQAASDHLnlVQTALRQQEKIERYQADLEE----LEERLEEQN 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1977 srfiELEQEKNAELTDLRQQSQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEIQKLEhQLKAVPRIQPVSEHQARE- 2052
Cdd:PRK04863 369 ----EVVEEADEQQEENEARAEAAEEEVDELKSQLAdyQQALDVQQTRAIqYQQAVQALE-RAKQLCGLPDLTADNAEDw 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2053 VEQLTNHLKEKTDRcselLLSKEQLQRDIQERNEEIEKLECRVREL------EQALLASAEPFPKVEDQK----RSGAVE 2122
Cdd:PRK04863 444 LEEFQAKEQEATEE----LLSLEQKLSVAQAAHSQFEQAYQLVRKIagevsrSEAWDVARELLRRLREQRhlaeQLQQLR 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2123 A---DPELSLEVQLQVERDATDRKQKEITNLE---------EQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQ 2190
Cdd:PRK04863 520 MrlsELEQRLRQQQRAERLLAEFCKRLGKNLDdedeleqlqEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2191 Q---ENRLFKDEIEKLGFAMKESDSVSTR-DQPMLfgkfAQLIQEKEIEIDRlneqfiklqqqlklttdnkviEEQKEQI 2266
Cdd:PRK04863 600 ArapAWLAAQDALARLREQSGEEFEDSQDvTEYMQ----QLLERERELTVER---------------------DELAARK 654
|
410
....*....|
gi 125661048 2267 QDLETQIERL 2276
Cdd:PRK04863 655 QALDEEIERL 664
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1949-2299 |
2.27e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1949 EVQCQAEKV--RGDLQKQVKALEIDVEeQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMrkfldeqaidreherdvfQ 2026
Cdd:PRK11281 40 DVQAQLDALnkQKLLEAEDKLVQQDLE-QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQA------------------Q 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2027 QEIQKLEHQLKAVPRiqpvSEHQAREVEQLTNHLKEKTDrcselllSKEQLQRDIQERNEEIEKLECRVRELEQALLASA 2106
Cdd:PRK11281 101 AELEALKDDNDEETR----ETLSTLSLRQLESRLAQTLD-------QLQNAQNDLAEYNSQLVSLQTQPERAQAALYANS 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2107 EPFPKVEDQKRSGAVEADP-ELSLEVQLQVERDAtdrkqkeitnLEEQLEQFREELENkNDEVQELLmqlEIQRKESTTR 2185
Cdd:PRK11281 170 QRLQQIRNLLKGGKVGGKAlRPSQRVLLQAEQAL----------LNAQNDLQRKSLEG-NTQLQDLL---QKQRDYLTAR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2186 LQELQQENRLFKDEI---------EKLGFAMKESDSVSTRDQPMLFGKFAQ-------LIQE---------KEIEI---- 2236
Cdd:PRK11281 236 IQRLEHQLQLLQEAInskrltlseKTVQEAQSQDEAARIQANPLVAQELEInlqlsqrLLKAteklntltqQNLRVknwl 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2237 DRLN-------EQF-----------IKLQQQLKLTTD-------NKV---------IEEQKEQIQDLETQIERLmsEREH 2282
Cdd:PRK11281 316 DRLTqsernikEQIsvlkgslllsrILYQQQQALPSAdlieglaDRIadlrleqfeINQQRDALFQPDAYIDKL--EAGH 393
|
410
....*....|....*..
gi 125661048 2283 EKKQREEEVEQLTGVVE 2299
Cdd:PRK11281 394 KSEVTDEVRDALLQLLD 410
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2965-3128 |
2.31e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2965 LLAEIEDLRAQINGGKMTLEREQGTEKSSQELLDCSMQQKQSLEMQLELSSLRDRAAELQEQ---LSSEKMVVAELKSEL 3041
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAElerLDASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3042 AQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTL-AREQKNSLELQWALEKEKARSGhHEGREKEELEDLKF 3120
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLeAAEDLARLELRALLEERFAAAL-GDAVERELRENLEE 773
|
....*...
gi 125661048 3121 SLEDQKRR 3128
Cdd:COG4913 774 RIDALRAR 781
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
458-606 |
2.48e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 458 ELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTV------ED 531
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnnkeyEA 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 532 LKAEIVAASESRKELelkhEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQLlfshEEELSKLKEDLE 606
Cdd:COG1579 94 LQKEIESLKRRISDL----EDEILELMERIEELEEELAELEAELAE-LEAELEEKKAEL----DEELAELEAELE 159
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
662-729 |
2.51e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 43.52 E-value: 2.51e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 125661048 662 KLRDLQeclvnSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQE 729
Cdd:PRK05431 36 ERRELQ-----TELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
109-335 |
2.61e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 109 LDDSSSEQGAQSSQTcLQMVEKELAEKQHDIEELTQELEEMRASFG--------TEGLKQLQEFEAAIKQRDGIITQLTA 180
Cdd:COG3206 162 LEQNLELRREEARKA-LEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlseeaKLLLQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 181 NLQQARREKDDTMVEFLELTEQS--QKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIftqqqqlqdyqkkeEDLQAQ 258
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQI--------------AALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 125661048 259 ISFLQEKLRAfEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLgglhEQLTQRNQEIQ 335
Cdd:COG3206 307 LQQEAQRILA-SLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELY----ESLLQRLEEAR 378
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
2082-2340 |
2.62e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2082 QERNEEIEKLECRVRELEQAL--LASAEPFPKVEDQKRSGAVEADPElslEVQLQVERDAtDRKQKEITNLEEQLEQFRE 2159
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALdkLRSYLPKLNPLREEKKKVSVKSLE---ELIKDVEEEL-EKIEKEIKELEEEISELEN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2160 ELENKNDEVQEL--------LMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTrdqpmlfgKFAQLIQE 2231
Cdd:PRK05771 115 EIKELEQEIERLepwgnfdlDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGY--------VYVVVVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2232 KEIEIDRLNE----QFIKLQQQLKLTTDnKVIEEQKEQIQDLETQIERLmseREHEKKQREEEVEQLTGVVEKLQQEVVS 2307
Cdd:PRK05771 187 KELSDEVEEElkklGFERLELEEEGTPS-ELIREIKEELEEIEKERESL---LEELKELAKKYLEELLALYEYLEIELER 262
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 125661048 2308 TEQQREGART---------LPEDE-ESFKHQLDKVTAEKLVLE 2340
Cdd:PRK05771 263 AEALSKFLKTdktfaiegwVPEDRvKKLKELIDKATGGSAYVE 305
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
575-753 |
2.87e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 575 MAESQEA--ELERLRTQLlFSHEEELSKLKEDLEvEHRINIEKLKDNLgIHYKQQIDGLQNEMNRKmesmqcetdnlitq 652
Cdd:COG1579 2 MPEDLRAllDLQELDSEL-DRLEHRLKELPAELA-ELEDELAALEARL-EAAKTELEDLEKEIKRL-------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 653 QNQLILENSKLRDLQECLVNSKSEEmnlQINELQKEIEILKqeeKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCA 732
Cdd:COG1579 65 ELEIEEVEARIKKYEEQLGNVRNNK---EYEALQKEIESLK---RRISDLEDEILELMERIEELEEELAELEAELAELEA 138
|
170 180
....*....|....*....|.
gi 125661048 733 QLDAENNILKEEKRVLEDKLK 753
Cdd:COG1579 139 ELEEKKAELDEELAELEAELE 159
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
2074-2189 |
2.89e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2074 KEQLQRDIQERNEEIEKLECRVRELEQALlasaepfpkvedqkrsgaveadpelslevqlqverdatDRKQKEITNLEEQ 2153
Cdd:PRK12704 70 RNEFEKELRERRNELQKLEKRLLQKEENL--------------------------------------DRKLELLEKREEE 111
|
90 100 110
....*....|....*....|....*....|....*.
gi 125661048 2154 LEQFREELENKNDEVQELLMQLEIQRKESTTRLQEL 2189
Cdd:PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
128-795 |
2.93e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 128 VEKELAEKQHDIEELTQELEEMRASFGTEGLkQLQEFEAAIKQRDGIITQLTANLQQARREKDD----TMVEFLELTEQS 203
Cdd:TIGR00606 324 CQRELEKLNKERRLLNQEKTELLVEQGRLQL-QADRHQEHIRARDSLIQSLATRLELDGFERGPfserQIKNFHTLVIER 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 204 QKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIF--TQQQQLQDYQKKEEDLQAQISFLQ-------------EKLRA 268
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLgrTIELKKEILEKKQEELKFVIKELQqlegssdrileldQELRK 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 269 FE-----MEKDRKIENLNAKEIQEKQALIDELNTRVVEEEK------------KTVELKNKVTTADEllgGLHEQLTQRN 331
Cdd:TIGR00606 483 AErelskAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEmeqlnhhtttrtQMEMLTKDKMDKDE---QIRKIKSRHS 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 332 QEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSA--VRRVEQETQRKLSHLQAELDEMYGKQIVQM 409
Cdd:TIGR00606 560 DELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKnhINNELESKEEQLSSYEDKLFDVCGSQDEES 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 410 KQELINQHMSQIEELKSQ-------HKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQ-----------ETHAQKE 471
Cdd:TIGR00606 640 DLERLKEEIEKSSKQRAMlagatavYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQsklrlapdklkSTESELK 719
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 472 ELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTvedlkaeIVAASESRKELelkhE 551
Cdd:TIGR00606 720 KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT-------IMPEEESAKVC----L 788
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 552 AEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQllfsheeeLSKLKEDLEVEHRINIEKLKDN--LGIHYKQQID 629
Cdd:TIGR00606 789 TDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQ--------VNQEKQEKQHELDTVVSKIELNrkLIQDQQEQIQ 860
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 630 GLQNEMNR-KMESMQCETDNLITQQ--NQLILENSKLRDLQECLVNSKSEEMNLQI---NELQKEIEILKQEEKEKGTLE 703
Cdd:TIGR00606 861 HLKSKTNElKSEKLQIGTNLQRRQQfeEQLVELSTEVQSLIREIKDAKEQDSPLETfleKDQQEKEELISSKETSNKKAQ 940
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 704 QEVQELQLKTEQLEKQLKEKEDDLQEKCAQ--LDAENNILKEEKRvLEDKLKMYSPSEQEERSIAVDPSTSKSADsRWQK 781
Cdd:TIGR00606 941 DKVNDIKEKVKNIHGYMKDIENKIQDGKDDylKQKETELNTVNAQ-LEECEKHQEKINEDMRLMRQDIDTQKIQE-RWLQ 1018
|
730
....*....|....
gi 125661048 782 EVAMLRKETEDLQQ 795
Cdd:TIGR00606 1019 DNLTLRKRENELKE 1032
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
557-944 |
3.29e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.50 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 557 YKIKLEMLEKEKNAVLDRMaesqEAELERLRTQLLFSH---EEEL---SKLKEDLevehrinIEKLKDNLGIHYKQQIDG 630
Cdd:PTZ00108 986 YLVRLDLYKKRKEYLLGKL----ERELARLSNKVRFIKhviNGELvitNAKKKDL-------VKELKKLGYVRFKDIIKK 1054
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 631 lqNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECL-------VNSKSEEMNLQINELQKEIEILKQEEKEKGTLE 703
Cdd:PTZ00108 1055 --KSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLsmpiwslTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLE 1132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 704 qevqELQLKTEQLEKQLKEKEDDLQE----KCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRW 779
Cdd:PTZ00108 1133 ----DLDKFEEALEEQEEVEEKEIAKeqrlKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRK 1208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 780 QKEVAMLRKETEDLQQQclYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRAlee 859
Cdd:PTZ00108 1209 LDDKPDNKKSNSSGSDQ--EDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQY--- 1283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 860 elLSKRGNPAAPKGKSSGIFPSETleIGEVVEKDTTELMEKLEVTKREKLELSEKVSgLSEQLKQthCTINSLSAEVRAL 939
Cdd:PTZ00108 1284 --SPPPPSKRPDGESNGGSKPSSP--TKKKVKKRLEGSLAALKKKKKSEKKTARKKK-SKTRVKQ--ASASQSSRLLRRP 1356
|
....*
gi 125661048 940 KQEKE 944
Cdd:PTZ00108 1357 RKKKS 1361
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1505-1690 |
4.24e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1505 VRKSMHDEVLVSSMDTSRQLILNEQLEDMRQELVRQYEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRLNEQLA--- 1581
Cdd:pfam17380 394 VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEerk 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1582 ------QKSSIDTEHVVSERERVLLEELEALKQLPLA---GRKELCCELRHSSTQTQDGHDDQEVEEQTLKDKTLERSPE 1652
Cdd:pfam17380 474 rkklelEKEKRDRKRAEEQRRKILEKELEERKQAMIEeerKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRR 553
|
170 180 190
....*....|....*....|....*....|....*...
gi 125661048 1653 DALLDRNLSNERYALkKANNRLLKILLEVVKTTSAAEE 1690
Cdd:pfam17380 554 IQEQMRKATEERSRL-EAMEREREMMRQIVESEKARAE 590
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3002-3231 |
4.37e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3002 QQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSD 3081
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3082 TLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNE---SQQKIESQKMLHD 3158
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAElaaLRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 125661048 3159 AQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDGgqpppalpSEDLLKELQKQLEEKHSR 3231
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE--------LEALIARLEAEAAAAAER 242
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
520-802 |
4.45e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 520 SEARKSLSTVEDLKAEIVAASEsRKELELKHEAEITNYKIKLEMLEKeknavldrmAESQEAELERLRTQLlfshEEELS 599
Cdd:PRK11281 29 AASNGDLPTEADVQAQLDALNK-QKLLEAEDKLVQQDLEQTLALLDK---------IDRQKEETEQLKQQL----AQAPA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 600 KLKEDLEvehriNIEKLKDNLGIHYKQQIDGLQNemnRKMESMQCET-DNLITQQNQLILENSKLRDLQ--------ECL 670
Cdd:PRK11281 95 KLRQAQA-----ELEALKDDNDEETRETLSTLSL---RQLESRLAQTlDQLQNAQNDLAEYNSQLVSLQtqperaqaALY 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 671 VNSK-SEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQ--------LKEKEDDLQEKCAQLDAENNIL 741
Cdd:PRK11281 167 ANSQrLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEgntqlqdlLQKQRDYLTARIQRLEHQLQLL 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 742 KE---EKRVLEdklkmyspSEQE-ERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNE 802
Cdd:PRK11281 247 QEainSKRLTL--------SEKTvQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNT 303
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
3144-3317 |
4.65e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3144 NESQQKIESQKMLHDAQLSEEQGrNLGLQALLESEQvRIQEMKSTLDKERELYAQLQSR-EDGGQPPPALPSEDLLKELQ 3222
Cdd:COG3206 192 EEAEAALEEFRQKNGLVDLSEEA-KLLLQQLSELES-QLAEARAELAEAEARLAALRAQlGSGPDALPELLQSPVIQQLR 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3223 KQLEEKHSRIVELLSeteKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKL 3302
Cdd:COG3206 270 AQLAELEAELAELSA---RYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
170
....*....|....*
gi 125661048 3303 DLEGKRLQGLMQEFQ 3317
Cdd:COG3206 347 PELEAELRRLEREVE 361
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3112-3298 |
4.69e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 4.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3112 KEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKmlhdAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDK 3191
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3192 ERELYAQL--QSREDGGQPPPA--LPSEDL-----------------------LKELQKQLEEKHSRIVELLSETEKYKL 3244
Cdd:COG4942 102 QKEELAELlrALYRLGRQPPLAllLSPEDFldavrrlqylkylaparreqaeeLRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 125661048 3245 DSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQ 3298
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
2147-2304 |
4.80e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 42.31 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2147 ITNLEEQLEQFREELENKNDEVQEL---LMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKEsdsvstrdqpmlfg 2223
Cdd:smart00787 146 KEGLDENLEGLKEDYKLLMKELELLnsiKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKE-------------- 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2224 KFAQLIQEKEIEIDRLNEQfiklqqQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQ 2303
Cdd:smart00787 212 KLKKLLQEIMIKVKKLEEL------EEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285
|
.
gi 125661048 2304 E 2304
Cdd:smart00787 286 L 286
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
638-744 |
5.03e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 638 KMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLE 717
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRY 484
|
90 100
....*....|....*....|....*..
gi 125661048 718 KQLKEKEDDLQEKCAQLDAENNILKEE 744
Cdd:COG0542 485 GKIPELEKELAELEEELAELAPLLREE 511
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2049-2203 |
5.68e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2049 QAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALlasaEPFPKVEDQKrsgavEADPELS 2128
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL----QLLPLYQELE-----ALEAELA 142
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 125661048 2129 levQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQR----KESTTRLQELQQENRLFKDEIEKL 2203
Cdd:COG4717 143 ---ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATeeelQDLAEELEELQQRLAELEEELEEA 218
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1973-2349 |
5.80e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.44 E-value: 5.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1973 EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKlEHQLKAVPRIQPVSEHQARE 2052
Cdd:pfam09731 44 EEVVLYALGEDPPLAPKPKTFRPLQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEVA-EEEKEATKDAAEAKAQLPKS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2053 VEQLTNHLKEKTdrcSELLLSKEQLQRDIQE-RNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAvEADPELSLEV 2131
Cdd:pfam09731 123 EQEKEKALEEVL---KEAISKAESATAVAKEaKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQKA-EALAEKLKEV 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2132 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQEllmqlEIQRKESTTRLQELQQENR-LFKDEIEKLgfaMKES 2210
Cdd:pfam09731 199 INLAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEK-----AQSLAKLVDQYKELVASERiVFQQELVSI---FPDI 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2211 DSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDnKVIEEQKEQIQDL-ETQIERLMSEREHEKKQREE 2289
Cdd:pfam09731 271 IPVLKEDNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIE-RALEKQKEELDKLaEELSARLEEVRAADEAQLRL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2290 EVE--------------------QLTGVVEKLQQEVVSTEQ--QREGAR----TLPEDEESFKHQLDKVTAEKLVLEQQV 2343
Cdd:pfam09731 350 EFErereeiresyeeklrtelerQAEAHEEHLKDVLVEQEIelQREFLQdikeKVEEERAGRLLKLNELLANLKGLEKAT 429
|
....*.
gi 125661048 2344 ETTNQV 2349
Cdd:pfam09731 430 SSHSEV 435
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1974-2192 |
5.84e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1974 EQVSRFIEleqeknAELTDLRQQSQALEKQLEKMRKflDEQAIDREHERDVFQQEIQKLEHQLKAVpRIQpVSEHQAReV 2053
Cdd:COG3206 174 RKALEFLE------EQLPELRKELEEAEAALEEFRQ--KNGLVDLSEEAKLLLQQLSELESQLAEA-RAE-LAEAEAR-L 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2054 EQLTNHLKEKTDRCSELLLSKEqlqrdIQERNEEIEKLEcrvRELEQALLASAEPFPKVEDQKRSGAvEADPELSLEVQ- 2132
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPV-----IQQLRAQLAELE---AELAELSARYTPNHPDVIALRAQIA-ALRAQLQQEAQr 313
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 125661048 2133 ----LQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTT---RLQELQQE 2192
Cdd:COG3206 314 ilasLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESllqRLEEARLA 380
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
385-613 |
5.99e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 385 QETQRKLSHLQAELDEMyGKQIVQMKQEL--INQHMSQIEELKSQHKReMENTLKSDTNAA-----IS-----KEQVNLM 452
Cdd:COG4913 606 FDNRAKLAALEAELAEL-EEELAEAEERLeaLEAELDALQERREALQR-LAEYSWDEIDVAsaereIAeleaeLERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 453 NAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ-----ENRLSEARKSLS 527
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElrallEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 528 T---VEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQeAELERLRTQLLFSHEEELSKLKED 604
Cdd:COG4913 764 ErelRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYL-ALLDRLEEDGLPEYEERFKELLNE 842
|
....*....
gi 125661048 605 LEVEHRINI 613
Cdd:COG4913 843 NSIEFVADL 851
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
432-768 |
6.03e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 432 MENTLKSdtnaaiSKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDL---LEEVRFLREQVQKA 508
Cdd:PRK01156 188 LEEKLKS------SNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELsslEDMKNRYESEIKTA 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 509 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRT 588
Cdd:PRK01156 262 ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDY 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 589 QLLFSHEEELSKLKEDLEVEHR------INIEKLKDNLGiHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLileNSK 662
Cdd:PRK01156 342 IKKKSRYDDLNNQILELEGYEMdynsylKSIESLKKKIE-EYSKNIERMSAFISEILKIQEIDPDAIKKELNEI---NVK 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 663 LRDlqeclVNSKSEEMNLQINEL-QKEIEILKQEEKEKGTLEQEVQELQL---KTEQLEKQLKEKEDDLQEKCAQLDAEN 738
Cdd:PRK01156 418 LQD-----ISSKVSSLNQRIRALrENLDELSRNMEMLNGQSVCPVCGTTLgeeKSNHIINHYNEKKSRLEEKIREIEIEV 492
|
330 340 350
....*....|....*....|....*....|
gi 125661048 739 NILKEEKRVLEdKLKMYSPSEQEERSIAVD 768
Cdd:PRK01156 493 KDIDEKIVDLK-KRKEYLESEEINKSINEY 521
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
352-559 |
6.10e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 6.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 352 SEEIKELMRTVEELQKR--NLKDSWLETSAVRRVEQETQRkLSHLQAELDEmygkqiVQMKQELINQHMSQIEELKSQHK 429
Cdd:COG3206 181 EEQLPELRKELEEAEAAleEFRQKNGLVDLSEEAKLLLQQ-LSELESQLAE------ARAELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 430 REMENTLKSDTNAAIsKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGE-KSALQSQSNDLLEEVRFLREQVQKA 508
Cdd:COG3206 254 DALPELLQSPVIQQL-RAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQlQQEAQRILASLEAELEALQAREASL 332
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 125661048 509 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASE-------SRKELELKHEAEITNYKI 559
Cdd:COG3206 333 QAQLAQLEARLAELPELEAELRRLEREVEVARElyesllqRLEEARLAEALTVGNVRV 390
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3064-3297 |
6.21e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 6.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3064 AFRSEVKEKTDEIHflsdtLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRntqlnllleqqkqlL 3143
Cdd:PTZ00121 1271 AIKAEEARKADELK-----KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK--------------A 1331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 3144 NESQQKIESQKMLHDAQLSEEQGRNLGLQAllESEQVRIQEMKSTLDKERELYAQLQSREdggqpppalpsEDLLKELQK 3223
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKKKADAAKKKAEE-----------KKKADEAKK 1398
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 125661048 3224 QLEEKHSRIVELL-SETEKYKLDSLqtRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQ 3297
Cdd:PTZ00121 1399 KAEEDKKKADELKkAAAAKKKADEA--KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
125-589 |
6.91e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 6.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 125 LQMVEKELAEKQHDIEELTQE---LEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTAN---LQQARREKDDTMVEF-- 196
Cdd:pfam15921 351 LVLANSELTEARTERDQFSQEsgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNsitIDHLRRELDDRNMEVqr 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 197 LELTEQSQKLQIQFQHLQANETLQ--NSTLSRTA--TDLLQAKRQIFTQQQQLQDYQK-----KEEDLQAQISFLQEKLR 267
Cdd:pfam15921 431 LEALLKAMKSECQGQMERQMAAIQgkNESLEKVSslTAQLESTKEMLRKVVEELTAKKmtlesSERTVSDLTASLQEKER 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 268 AFE-----MEKDRKIENLNAKEIQE----------KQALIDELNTRVVEEEKKTVELKNKVTTADELLG-------GLHE 325
Cdd:pfam15921 511 AIEatnaeITKLRSRVDLKLQELQHlknegdhlrnVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGqhgrtagAMQV 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 326 QLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVRRVEQETQRKLSHLQAELDEMYGKq 405
Cdd:pfam15921 591 EKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLE--------LEKVKLVNAGSERLRAVKDIKQERDQLLNE- 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 406 iVQMKQELINQHMSQIEELKSQHKREMENtlksdtnaaiskeqvnlMNAAINELNVRLQETHAQKEELKGELGVVLG--- 482
Cdd:pfam15921 662 -VKTSRNELNSLSEDYEVLKRNFRNKSEE-----------------METTTNKLKMQLKSAQSELEQTRNTLKSMEGsdg 723
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 483 -----------EKSALQSQSNDLLEEVRFLREQV---QKARQTIAEQENRLSEarkSLSTVEDLKAEIVAASESRKELEL 548
Cdd:pfam15921 724 hamkvamgmqkQITAKRGQIDALQSKIQFLEEAMtnaNKEKHFLKEEKNKLSQ---ELSTVATEKNKMAGELEVLRSQER 800
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 125661048 549 KHEAEITNYKIKLEMLEKEKNAVLDrMAESQEAELERLRTQ 589
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAECQD-IIQRQEQESVRLKLQ 840
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1937-2089 |
7.45e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 7.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1937 LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALeIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAi 2016
Cdd:PRK12704 60 LEAKEEIHKLRNEFEKELRERRNELQKLEKRL-LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI- 137
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 125661048 2017 dreherdvfQQEIQKLEhqlkavpRIQPVSEHQARevEQLTNHLKEKtdrcselllSKEQLQRDIQERNEEIE 2089
Cdd:PRK12704 138 ---------EEQLQELE-------RISGLTAEEAK--EILLEKVEEE---------ARHEAAVLIKEIEEEAK 183
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2144-2321 |
7.73e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 7.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2144 QKEITNLEEQLEQFREELENKNDEVQELlmQLEIQRKESttrlqELQQENRLFKDEIEKLGFAM--KESDSVstrdqpml 2221
Cdd:COG1579 30 PAELAELEDELAALEARLEAAKTELEDL--EKEIKRLEL-----EIEEVEARIKKYEEQLGNVRnnKEYEAL-------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2222 fgkfaqliqEKEIEIdrlneqfiklqQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKL 2301
Cdd:COG1579 95 ---------QKEIES-----------LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
170 180
....*....|....*....|.
gi 125661048 2302 QQEVVSTEQQREGAR-TLPED 2321
Cdd:COG1579 155 EAELEELEAEREELAaKIPPE 175
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1801-2469 |
7.83e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1801 EAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEktlferqi 1880
Cdd:TIGR00606 230 EAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDE-------- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1881 qEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGD 1960
Cdd:TIGR00606 302 -QLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1961 LQKQvkalEIDVEEQVSRFIELEQEK--------NAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKL 2032
Cdd:TIGR00606 381 GFER----GPFSERQIKNFHTLVIERqedeaktaAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2033 EHQLKAVPRIQPVSEHQAREVEQLTNHLKE----------KTDRCSELLLSKEQL-----QRDIQERNEEIEKLECRVRE 2097
Cdd:TIGR00606 457 KFVIKELQQLEGSSDRILELDQELRKAERElskaeknsltETLKKEVKSLQNEKAdldrkLRKLDQEMEQLNHHTTTRTQ 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2098 LEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDevqellMQLEI 2177
Cdd:TIGR00606 537 MEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQ------NKNHI 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2178 QRKESTTRLQELQQENRLF-----KDEIEKLGfAMKESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKL 2252
Cdd:TIGR00606 611 NNELESKEEQLSSYEDKLFdvcgsQDEESDLE-RLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQT 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2253 TTD-NKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDK 2331
Cdd:TIGR00606 690 EAElQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2332 VtaeklvlEQQVETTNQVMTHMNNVLKEINFkMDQITQSLCNLNKECAsnEELPSLPKESVHMTVHELGSDnLQPEDAPA 2411
Cdd:TIGR00606 770 Q-------ETLLGTIMPEEESAKVCLTDVTI-MERFQMELKDVERKIA--QQAAKLQGSDLDRTVQQVNQE-KQEKQHEL 838
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 125661048 2412 QDVTKPLEKQTSLTRLQKSPEA---SRTQEIESLASSVGAKDVELTQCREQTETIQEQAQS 2469
Cdd:TIGR00606 839 DTVVSKIELNRKLIQDQQEQIQhlkSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQS 899
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
414-589 |
9.00e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 9.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 414 INQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKsalqsQSND 493
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK-----EYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 494 LLEEVRFLREQVQKARQTIAEQENRLSEARKslsTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLD 573
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEE---ELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
170
....*....|....*.
gi 125661048 574 RMAESQEAELERLRTQ 589
Cdd:COG1579 171 KIPPELLALYERIRKR 186
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
125-554 |
9.11e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 9.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 125 LQMVEKELAEKQhdIEELTQELEEMRASfGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQ 204
Cdd:PRK03918 374 LERLKKRLTGLT--PEKLEKELEELEKA-KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 205 KlqiqfqHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLqEKLRAFEmekdRKIENLNAKE 284
Cdd:PRK03918 451 K------ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA-EQLKELE----EKLKKYNLEE 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 285 IQEKQALIDELNTRVVEEEKKTVELKNKVttadELLGGLHEQLTQRNQEIQSLKLELGN-SQQNERKCSEEIKELMRTVE 363
Cdd:PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDELEEELAElLKELEELGFESVEELEERLK 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 364 ELQKrnLKDSWLETSAVRRVEQETQRKLSHLQAELDEmygkqivqmKQELINQHMSQIEELKSQhkrementlksdtnaa 443
Cdd:PRK03918 596 ELEP--FYNEYLELKDAEKELEREEKELKKLEEELDK---------AFEELAETEKRLEELRKE---------------- 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 444 iskeqvnlmnaaINELNVRL-QETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEA 522
Cdd:PRK03918 649 ------------LEELEKKYsEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
410 420 430
....*....|....*....|....*....|..
gi 125661048 523 RKSLSTVEDLKAEIVAASESRKELELKHEAEI 554
Cdd:PRK03918 717 EKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1974-2206 |
9.14e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 9.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 1974 EQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKfldeqaidrehERDVFQQEIQKLEHQLKAVPRIQpvsehQAREV 2053
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEA-----------ELEELREELEKLEKLLQLLPLYQ-----ELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125661048 2054 EQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQallasaepfpkvedqkrsgaveadpELSLEVQL 2133
Cdd:COG4717 138 EAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLE-------------------------QLSLATEE 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 125661048 2134 QVERDATDRkqkeitnleEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFA 2206
Cdd:COG4717 193 ELQDLAEEL---------EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAA 256
|
|
| |
