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Conserved domains on  [gi|38142488|ref|NP_938050|]
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pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial precursor [Mus musculus]

Protein Classification

GcvT family protein( domain architecture ID 11429831)

GcvT (glycine cleavage system T) family protein similar to mammalian dimethylglycine dehydrogenase that catalyzes the FAD-dependent demethylation of N,N-dimethylglycine to sarcosine, and pyruvate dehydrogenase phosphatase regulatory subunit

CATH:  3.30.1360.120|3.30.70.140|3.30.70.1400|3.30.9.10|2.40.30.110
PubMed:  8219277
SCOP:  4000128|4000062

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GcvT COG0404
Glycine cleavage system protein T (aminomethyltransferase) [Amino acid transport and ...
 453-867 8.08e-86

Glycine cleavage system protein T (aminomethyltransferase) [Amino acid transport and metabolism]; Glycine cleavage system protein T (aminomethyltransferase) is part of the Pathway/BioSystem: Glycine cleavage


:

Pssm-ID: 440173 [Multi-domain]  Cd Length: 372  Bit Score: 278.50  E-value: 8.08e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 453 GRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVppnkdllaleqsktfykpdwfDIVESEVKCCKEAVCVIDMSSFTKFE 532
Cdd:COG0404   1 FRPLRRTPLHDRHVALGAKFVDFGGWEMPVQYP---------------------GGVIAEHLAVREAVGLFDVSHMGKIE 59

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 533 ITstGDEALESLQYLFCNDLDV-PVGHIVHTGMLNEYGGYENDCSIARLTKRSFFMISPTDQQVHCWAWLNKYLPKDSNL 611
Cdd:COG0404  60 VT--GPDAAAFLDRLVTNDVSKlKPGRARYTLMLNEDGGIIDDLTVYRLGEDRFLLVVNAANAAKDLAWLEEHLPPDFDV 137

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 612 LLEDVTWKYTALNLIGPRAVDVLSELsyAPMTPDHFPTLFCKEMSVGYANgIRVMSMTHTGEPGFMLYIPIEYALHVYNE 691
Cdd:COG0404 138 TITDVTDDWALLAVQGPKAREVLAKL--TDADLSALPFMSFREGTVAGVP-VRVSRTGYTGEDGFEIYVPAEDAEALWDA 214

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 692 VMSVGQKYGIRNAGYYALRSLRIEKFFAFWGQDLNTLTTPLECGGESRVKLEKGiDFIGRDALLQQKQTGVYKRLAMFIL 771
Cdd:COG0404 215 LLEAGEEFGVKPCGLGARDTLRLEAGYPLYGHELDETTTPLEAGLGWAVKLDKG-DFIGKEALLRQKEEGPRRKLVGLEL 293

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 772 DDHDTdldlwPWWGEPIYRNGKYAGKTTSSAYSYTLERHVCLGYVHNFSEDSGEeqvvttdfinrgEYEIDIAGHRFQAK 851
Cdd:COG0404 294 DGRGV-----PRAGAPVLADGEVVGEVTSGTFSPTLGKSIALAYVPAGLARPGT------------ELEVEIRGKRVPAE 356

                       410
                ....*....|....*.
gi 38142488 852 AKLYPvtsFFTHKRRK 867
Cdd:COG0404 357 VVKPP---FYDPEGER 369
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
40-384 2.20e-65

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


:

Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 223.24  E-value: 2.20e-65
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  40 AQAQVVICGGGIMGTSVAYHLSKMGWqDIVLLEQGRLAAGSTRFCAGILSTARHSSVEQKM---ANYSNKLYHQLEQETG 116
Cdd:COG0665   1 ATADVVVIGGGIAGLSTAYHLARRGL-DVTVLERGRPGSGASGRNAGQLRPGLAALADRALvrlAREALDLWRELAAELG 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 117 IQTGYLRTGSISLAQTQDRLISLKRINSRLNVVGIPSEIISPKKVAELHPLLNVHDLVGAMYVPEDAVVSSADVALALAS 196
Cdd:COG0665  80 IDCDFRRTGVLYLARTEAELAALRAEAEALRALGLPVELLDAAELREREPGLGSPDYAGGLYDPDDGHVDPAKLVRALAR 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 197 AASQNGVQIYDRTSVLHVLIKKGQVTGVETDKGQIECQYFVNCAGQWAYELGlsNEEPLSIPLHACEHFYLLTRPwdTPL 276
Cdd:COG0665 160 AARAAGVRIREGTPVTGLEREGGRVTGVRTERGTVRADAVVLAAGAWSARLL--PMLGLRLPLRPVRGYVLVTEP--LPD 235

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 277 QSNTPTIVdaDGRIYIRNWQGG--ILSGGFEKNPkpiftegknqleiQNLREDWDHFEPLLSSLLRRMPALETLEILKLV 354
Cdd:COG0665 236 LPLRPVLD--DTGVYLRPTADGrlLVGGTAEPAG-------------FDRAPTPERLEALLRRLRRLFPALADAEIVRAW 300

                       330       340       350
                ....*....|....*....|....*....|
gi 38142488 355 NCPETFTPDMKCIMGESPVVQGYFVLAGMN 384
Cdd:COG0665 301 AGLRPMTPDGLPIIGRLPGAPGLYVATGHG 330
FAO_M pfam16350
FAD dependent oxidoreductase central domain; This domain occurs in several FAD dependent ...
 405-459 5.42e-16

FAD dependent oxidoreductase central domain; This domain occurs in several FAD dependent oxidoreductases: Sarcosine dehydrogenase, Dimethylglycine dehydrogenase and Dimethylglycine dehydrogenase. It is situated between the DAO domain (pfam01266) and the GCV_T domain (pfam01571).


:

Pssm-ID: 465100  Cd Length: 56  Bit Score: 72.49  E-value: 5.42e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 38142488   405 GYPSENVWELDLQRFGALQSSRTFLRHRVMEVMPLIYDLKVPRWDFQTGRQLRTS 459
Cdd:pfam16350   2 GEPPIDLWECDIRRFGPHQNNREYLRERVAENYGEVYDIHHPNEEREAGRPLRTS 56
 
Name Accession Description Interval E-value
GcvT COG0404
Glycine cleavage system protein T (aminomethyltransferase) [Amino acid transport and ...
 453-867 8.08e-86

Glycine cleavage system protein T (aminomethyltransferase) [Amino acid transport and metabolism]; Glycine cleavage system protein T (aminomethyltransferase) is part of the Pathway/BioSystem: Glycine cleavage


Pssm-ID: 440173 [Multi-domain]  Cd Length: 372  Bit Score: 278.50  E-value: 8.08e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 453 GRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVppnkdllaleqsktfykpdwfDIVESEVKCCKEAVCVIDMSSFTKFE 532
Cdd:COG0404   1 FRPLRRTPLHDRHVALGAKFVDFGGWEMPVQYP---------------------GGVIAEHLAVREAVGLFDVSHMGKIE 59

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 533 ITstGDEALESLQYLFCNDLDV-PVGHIVHTGMLNEYGGYENDCSIARLTKRSFFMISPTDQQVHCWAWLNKYLPKDSNL 611
Cdd:COG0404  60 VT--GPDAAAFLDRLVTNDVSKlKPGRARYTLMLNEDGGIIDDLTVYRLGEDRFLLVVNAANAAKDLAWLEEHLPPDFDV 137

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 612 LLEDVTWKYTALNLIGPRAVDVLSELsyAPMTPDHFPTLFCKEMSVGYANgIRVMSMTHTGEPGFMLYIPIEYALHVYNE 691
Cdd:COG0404 138 TITDVTDDWALLAVQGPKAREVLAKL--TDADLSALPFMSFREGTVAGVP-VRVSRTGYTGEDGFEIYVPAEDAEALWDA 214

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 692 VMSVGQKYGIRNAGYYALRSLRIEKFFAFWGQDLNTLTTPLECGGESRVKLEKGiDFIGRDALLQQKQTGVYKRLAMFIL 771
Cdd:COG0404 215 LLEAGEEFGVKPCGLGARDTLRLEAGYPLYGHELDETTTPLEAGLGWAVKLDKG-DFIGKEALLRQKEEGPRRKLVGLEL 293

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 772 DDHDTdldlwPWWGEPIYRNGKYAGKTTSSAYSYTLERHVCLGYVHNFSEDSGEeqvvttdfinrgEYEIDIAGHRFQAK 851
Cdd:COG0404 294 DGRGV-----PRAGAPVLADGEVVGEVTSGTFSPTLGKSIALAYVPAGLARPGT------------ELEVEIRGKRVPAE 356

                       410
                ....*....|....*.
gi 38142488 852 AKLYPvtsFFTHKRRK 867
Cdd:COG0404 357 VVKPP---FYDPEGER 369
GCV_T pfam01571
Aminomethyltransferase folate-binding domain; This is a family of glycine cleavage T-proteins, ...
 462-735 3.55e-82

Aminomethyltransferase folate-binding domain; This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase.


Pssm-ID: 460255  Cd Length: 254  Bit Score: 264.45  E-value: 3.55e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   462 YDRLDAQGARWMEKHGFERPKYFVPPNKDllaleqsktfykpdwfdiveSEVKCCKEAVCVIDMSSFTKFEITstGDEAL 541
Cdd:pfam01571   1 YDRHVALGAKFVEFAGWEMPVQYGSNGIL--------------------AEHRAVREAAGLFDVSHMGKIEVS--GPDAA 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   542 ESLQYLFCNDLD-VPVGHIVHTGMLNEYGGYENDCSIARLTKRSFFMISPTDQQVHCWAWLNKYLPKDsNLLLEDVTWKY 620
Cdd:pfam01571  59 AFLQRLTTNDVSkLKPGRATYTLMLNERGGVIDDLTVYRLGDDHFLLVVNAANREKDLAWLRKHAEKL-DVVVVDVTDDY 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   621 TALNLIGPRAVDVLSELSYAPMTPDhFPTLFCKEMSVGYANgIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKYG 700
Cdd:pfam01571 138 ALLALQGPKAREVLEKLTDGDLLEA-LPFFSFREIEIGGVP-VRVSRTGYTGEDGFEIYVPAEDAVELWEALLEAGAELG 215

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 38142488   701 IRNAGYYALRSLRIEKFFAFWGQDLNTLTTPLECG 735
Cdd:pfam01571 216 LRPAGLGARDSLRLEAGLPLYGHDLDEETTPLEAG 250
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
40-384 2.20e-65

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 223.24  E-value: 2.20e-65
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  40 AQAQVVICGGGIMGTSVAYHLSKMGWqDIVLLEQGRLAAGSTRFCAGILSTARHSSVEQKM---ANYSNKLYHQLEQETG 116
Cdd:COG0665   1 ATADVVVIGGGIAGLSTAYHLARRGL-DVTVLERGRPGSGASGRNAGQLRPGLAALADRALvrlAREALDLWRELAAELG 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 117 IQTGYLRTGSISLAQTQDRLISLKRINSRLNVVGIPSEIISPKKVAELHPLLNVHDLVGAMYVPEDAVVSSADVALALAS 196
Cdd:COG0665  80 IDCDFRRTGVLYLARTEAELAALRAEAEALRALGLPVELLDAAELREREPGLGSPDYAGGLYDPDDGHVDPAKLVRALAR 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 197 AASQNGVQIYDRTSVLHVLIKKGQVTGVETDKGQIECQYFVNCAGQWAYELGlsNEEPLSIPLHACEHFYLLTRPwdTPL 276
Cdd:COG0665 160 AARAAGVRIREGTPVTGLEREGGRVTGVRTERGTVRADAVVLAAGAWSARLL--PMLGLRLPLRPVRGYVLVTEP--LPD 235

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 277 QSNTPTIVdaDGRIYIRNWQGG--ILSGGFEKNPkpiftegknqleiQNLREDWDHFEPLLSSLLRRMPALETLEILKLV 354
Cdd:COG0665 236 LPLRPVLD--DTGVYLRPTADGrlLVGGTAEPAG-------------FDRAPTPERLEALLRRLRRLFPALADAEIVRAW 300

                       330       340       350
                ....*....|....*....|....*....|
gi 38142488 355 NCPETFTPDMKCIMGESPVVQGYFVLAGMN 384
Cdd:COG0665 301 AGLRPMTPDGLPIIGRLPGAPGLYVATGHG 330
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 44-384 1.52e-49

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 178.36  E-value: 1.52e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488    44 VVICGGGIMGTSVAYHLSKMGWqDIVLLEQG-RLAAGSTRFCAGILSTARHS---SVEQKMANYSNKLYHQLEQETGIQT 119
Cdd:pfam01266   2 VVVIGGGIVGLSTAYELARRGL-SVTLLERGdDPGSGASGRNAGLIHPGLRYlepSELARLALEALDLWEELEEELGIDC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   120 GYLRTGSISLAQTQDRlISLKRINSRLNVVGIPSEIISPKKVAELHPLLNvhDLVGAMYVPEDAVVSSADVALALASAAS 199
Cdd:pfam01266  81 GFRRCGVLVLARDEEE-EALEKLLAALRRLGVPAELLDAEELRELEPLLP--GLRGGLFYPDGGHVDPARLLRALARAAE 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   200 QNGVQIYDRTSVLHvLIKKGQVTGVETDkGQIECqyFVNCAGQWAYELGLSneePLSIPLHACEHFYLLTRPW-DTPLQS 278
Cdd:pfam01266 158 ALGVRIIEGTEVTG-IEEEGGVWGVVTT-GEADA--VVNAAGAWADLLALP---GLRLPVRPVRGQVLVLEPLpEALLIL 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   279 NTPTIVDADGRIYIRN-WQGGILSGGFEKNPKPiftegknqleiQNLREDWDHFEPLLSSLLRRMPALETLEilklvncp 357
Cdd:pfam01266 231 PVPITVDPGRGVYLRPrADGRLLLGGTDEEDGF-----------DDPTPDPEEIEELLEAARRLFPALADIE-------- 291

                         330       340       350
                  ....*....|....*....|....*....|..
gi 38142488   358 ETF-----TPDMKCIMGEsPVVQGYFVLAGMN 384
Cdd:pfam01266 292 RAWaglrpLPDGLPIIGR-PGSPGLYLATGHG 322
gcvT PRK00389
glycine cleavage system aminomethyltransferase GcvT;
456-837 1.51e-37

glycine cleavage system aminomethyltransferase GcvT;


Pssm-ID: 234742 [Multi-domain]  Cd Length: 359  Bit Score: 144.49  E-value: 1.51e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  456 LRTSPLYDRLDAQGARWMEKHGFERP-KYfvppnkdllaleQSktfykpdwfdIVEsEVKCCKEAVCVIDMSSFTKFEIT 534
Cdd:PRK00389   2 LKRTPLYDLHVALGAKMVDFGGWEMPvQY------------GS----------IIE-EHHAVRTDAGLFDVSHMGEVDVT 58

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  535 stGDEALESLQYLFCNDLD-VPVGHIVHTGMLNEYGGYENDCSIARLTKRSFFMI--SPTDQQVhcWAWLNKYLpKDSNL 611
Cdd:PRK00389  59 --GPDALAFLQYLLANDVSkLKPGKAQYTCMLNEDGGVIDDLIVYKLSEDEYLLVvnAANREKD--LAWIKSHA-AGFGV 133

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  612 LLEDVTWKYTALNLIGPRAVDVLSELSYAPMtpDHFPTLFCKEMSVGYANGIRVmSMT-HTGEPGFMLYIPIEYALHVYN 690
Cdd:PRK00389 134 EVTDRSDDLAMIAVQGPKAREKLQKLTDADL--SELKPFFGAQGAEVGGGDVLV-ARTgYTGEDGFEIYLPAEDAEALWD 210

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  691 EVMSVGqkygIRNAGYYALRSLRIEKFFAFWGQDLNTLTTPLECGGESRVKLEKGIDFIGRDALLQQKQTGVYKRLAMF- 769
Cdd:PRK00389 211 ALLEAG----VKPCGLGARDTLRLEAGMPLYGQDMDETITPLEAGLGWTVKLEEKRDFIGREALEAQKEAGVERKLVGLe 286

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  770 -----IlddhdtdldlwPWWGEPIYRNGKYAGKTTSSAYSYTLERHVCLGYVhnfSEDSGEE------------QVVTTD 832
Cdd:PRK00389 287 leergI-----------PRHGYPVLADGEEIGEVTSGTFSPTLGKSIALAYV---PAGVGDEveveirgkqvpaKVVKPP 352


                 ....*
gi 38142488  833 FINRG 837
Cdd:PRK00389 353 FVRRG 357
FAO_M pfam16350
FAD dependent oxidoreductase central domain; This domain occurs in several FAD dependent ...
 405-459 5.42e-16

FAD dependent oxidoreductase central domain; This domain occurs in several FAD dependent oxidoreductases: Sarcosine dehydrogenase, Dimethylglycine dehydrogenase and Dimethylglycine dehydrogenase. It is situated between the DAO domain (pfam01266) and the GCV_T domain (pfam01571).


Pssm-ID: 465100  Cd Length: 56  Bit Score: 72.49  E-value: 5.42e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 38142488   405 GYPSENVWELDLQRFGALQSSRTFLRHRVMEVMPLIYDLKVPRWDFQTGRQLRTS 459
Cdd:pfam16350   2 GEPPIDLWECDIRRFGPHQNNREYLRERVAENYGEVYDIHHPNEEREAGRPLRTS 56
soxA_mon TIGR01377
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of ...
 44-419 1.83e-09

sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]


Pssm-ID: 130444 [Multi-domain]  Cd Length: 380  Bit Score: 60.61  E-value: 1.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488    44 VVICGGGIMGTSVAYHLSKMGwQDIVLLEQGRL--AAGSTRfcaGILSTARHSSVEQ---KMANYSNKLYHQLEQETGIQ 118
Cdd:TIGR01377   3 VIVVGAGIMGCFAAYHLAKHG-KKTLLLEQFDLphSRGSSH---GQSRIIRKAYPEDfytPMMLECYQLWAQLEKEAGTK 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   119 TgYLRTGSISLAQTQDRliSLKRINSRLNVVGIPSEIISPKKVAELHPLLNVHDLVGAMYVPEDAVVSSADVALALASAA 198
Cdd:TIGR01377  79 L-HRQTGLLLLGPKENQ--FLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELA 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   199 SQNGVQIYDRTSVLHVLIKKGQVTgVETDKGQIECQYFVNCAGQWAYEL--GLSNEEPLSiPLHACEHFYLLTRPWDTPL 276
Cdd:TIGR01377 156 EAHGATVRDGTKVVEIEPTELLVT-VKTTKGSYQANKLVVTAGAWTSKLlsPLGIEIPLQ-PLRINVCYWREKEPGSYGV 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   277 QSNTPTIV--DADGRIY---IRNWQG---GILSGGFEKNPKPIFTE-GKNQLEIQNLRedwdHFepllssLLRRMPALET 347
Cdd:TIGR01377 234 SQAFPCFLvlGLNPHIYglpSFEYPGlmkVYYHHGQQIDPDERDCPfGADIEDVQILR----KF------VRDHLPGLNG 303

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38142488   348 lEILKLVNCPETFTPDMKCIMGESPVVQGYFVLAGMNSAGLSLGGGAGKFLAEWMVYGYPSENVWELDLQRF 419
Cdd:TIGR01377 304 -EPKKGEVCMYTNTPDEHFVIDLHPKYDNVVIGAGFSGHGFKLAPVVGKILAELAMKLKPSYDLAIFSLNRF 374
PRK00711 PRK00711
D-amino acid dehydrogenase;
43-231 6.59e-07

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 52.49  E-value: 6.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   43 QVVICGGGIMGTSVAYHLSKMGWQDIVLLEQGRLA-------AG--STRFCA-----GILSTA------RHS-------- 94
Cdd:PRK00711   2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPAletsfanAGqiSPGYAApwaapGVPLKAikwlfqRHAplairpdg 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   95 SVEQ-----KM-------------------ANYSNKLYHQLEQETGIQTGYLRTGSISLAQTQDRLISLKRINSRLNVVG 150
Cdd:PRK00711  82 DPFQlrwmwQMlrnctasryavnksrmvrlAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEAG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  151 IPSEIISPKKVAELHP-LLNV-HDLVGAMYVPEDAV-------VSSADvalalasAASQNGVQIYDRTSVLHVLIKKGQV 221
Cdd:PRK00711 162 VPYELLDRDELAAVEPaLAGVrHKLVGGLRLPNDETgdcqlftQRLAA-------MAEQLGVKFRFNTPVDGLLVEGGRI 234

                        250
                 ....*....|
gi 38142488  222 TGVETDKGQI 231
Cdd:PRK00711 235 TGVQTGGGVI 244
 
Name Accession Description Interval E-value
GcvT COG0404
Glycine cleavage system protein T (aminomethyltransferase) [Amino acid transport and ...
 453-867 8.08e-86

Glycine cleavage system protein T (aminomethyltransferase) [Amino acid transport and metabolism]; Glycine cleavage system protein T (aminomethyltransferase) is part of the Pathway/BioSystem: Glycine cleavage


Pssm-ID: 440173 [Multi-domain]  Cd Length: 372  Bit Score: 278.50  E-value: 8.08e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 453 GRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVppnkdllaleqsktfykpdwfDIVESEVKCCKEAVCVIDMSSFTKFE 532
Cdd:COG0404   1 FRPLRRTPLHDRHVALGAKFVDFGGWEMPVQYP---------------------GGVIAEHLAVREAVGLFDVSHMGKIE 59

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 533 ITstGDEALESLQYLFCNDLDV-PVGHIVHTGMLNEYGGYENDCSIARLTKRSFFMISPTDQQVHCWAWLNKYLPKDSNL 611
Cdd:COG0404  60 VT--GPDAAAFLDRLVTNDVSKlKPGRARYTLMLNEDGGIIDDLTVYRLGEDRFLLVVNAANAAKDLAWLEEHLPPDFDV 137

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 612 LLEDVTWKYTALNLIGPRAVDVLSELsyAPMTPDHFPTLFCKEMSVGYANgIRVMSMTHTGEPGFMLYIPIEYALHVYNE 691
Cdd:COG0404 138 TITDVTDDWALLAVQGPKAREVLAKL--TDADLSALPFMSFREGTVAGVP-VRVSRTGYTGEDGFEIYVPAEDAEALWDA 214

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 692 VMSVGQKYGIRNAGYYALRSLRIEKFFAFWGQDLNTLTTPLECGGESRVKLEKGiDFIGRDALLQQKQTGVYKRLAMFIL 771
Cdd:COG0404 215 LLEAGEEFGVKPCGLGARDTLRLEAGYPLYGHELDETTTPLEAGLGWAVKLDKG-DFIGKEALLRQKEEGPRRKLVGLEL 293

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 772 DDHDTdldlwPWWGEPIYRNGKYAGKTTSSAYSYTLERHVCLGYVHNFSEDSGEeqvvttdfinrgEYEIDIAGHRFQAK 851
Cdd:COG0404 294 DGRGV-----PRAGAPVLADGEVVGEVTSGTFSPTLGKSIALAYVPAGLARPGT------------ELEVEIRGKRVPAE 356

                       410
                ....*....|....*.
gi 38142488 852 AKLYPvtsFFTHKRRK 867
Cdd:COG0404 357 VVKPP---FYDPEGER 369
GCV_T pfam01571
Aminomethyltransferase folate-binding domain; This is a family of glycine cleavage T-proteins, ...
 462-735 3.55e-82

Aminomethyltransferase folate-binding domain; This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase.


Pssm-ID: 460255  Cd Length: 254  Bit Score: 264.45  E-value: 3.55e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   462 YDRLDAQGARWMEKHGFERPKYFVPPNKDllaleqsktfykpdwfdiveSEVKCCKEAVCVIDMSSFTKFEITstGDEAL 541
Cdd:pfam01571   1 YDRHVALGAKFVEFAGWEMPVQYGSNGIL--------------------AEHRAVREAAGLFDVSHMGKIEVS--GPDAA 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   542 ESLQYLFCNDLD-VPVGHIVHTGMLNEYGGYENDCSIARLTKRSFFMISPTDQQVHCWAWLNKYLPKDsNLLLEDVTWKY 620
Cdd:pfam01571  59 AFLQRLTTNDVSkLKPGRATYTLMLNERGGVIDDLTVYRLGDDHFLLVVNAANREKDLAWLRKHAEKL-DVVVVDVTDDY 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   621 TALNLIGPRAVDVLSELSYAPMTPDhFPTLFCKEMSVGYANgIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKYG 700
Cdd:pfam01571 138 ALLALQGPKAREVLEKLTDGDLLEA-LPFFSFREIEIGGVP-VRVSRTGYTGEDGFEIYVPAEDAVELWEALLEAGAELG 215

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 38142488   701 IRNAGYYALRSLRIEKFFAFWGQDLNTLTTPLECG 735
Cdd:pfam01571 216 LRPAGLGARDSLRLEAGLPLYGHDLDEETTPLEAG 250
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
40-384 2.20e-65

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 223.24  E-value: 2.20e-65
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  40 AQAQVVICGGGIMGTSVAYHLSKMGWqDIVLLEQGRLAAGSTRFCAGILSTARHSSVEQKM---ANYSNKLYHQLEQETG 116
Cdd:COG0665   1 ATADVVVIGGGIAGLSTAYHLARRGL-DVTVLERGRPGSGASGRNAGQLRPGLAALADRALvrlAREALDLWRELAAELG 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 117 IQTGYLRTGSISLAQTQDRLISLKRINSRLNVVGIPSEIISPKKVAELHPLLNVHDLVGAMYVPEDAVVSSADVALALAS 196
Cdd:COG0665  80 IDCDFRRTGVLYLARTEAELAALRAEAEALRALGLPVELLDAAELREREPGLGSPDYAGGLYDPDDGHVDPAKLVRALAR 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 197 AASQNGVQIYDRTSVLHVLIKKGQVTGVETDKGQIECQYFVNCAGQWAYELGlsNEEPLSIPLHACEHFYLLTRPwdTPL 276
Cdd:COG0665 160 AARAAGVRIREGTPVTGLEREGGRVTGVRTERGTVRADAVVLAAGAWSARLL--PMLGLRLPLRPVRGYVLVTEP--LPD 235

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 277 QSNTPTIVdaDGRIYIRNWQGG--ILSGGFEKNPkpiftegknqleiQNLREDWDHFEPLLSSLLRRMPALETLEILKLV 354
Cdd:COG0665 236 LPLRPVLD--DTGVYLRPTADGrlLVGGTAEPAG-------------FDRAPTPERLEALLRRLRRLFPALADAEIVRAW 300

                       330       340       350
                ....*....|....*....|....*....|
gi 38142488 355 NCPETFTPDMKCIMGESPVVQGYFVLAGMN 384
Cdd:COG0665 301 AGLRPMTPDGLPIIGRLPGAPGLYVATGHG 330
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 44-384 1.52e-49

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 178.36  E-value: 1.52e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488    44 VVICGGGIMGTSVAYHLSKMGWqDIVLLEQG-RLAAGSTRFCAGILSTARHS---SVEQKMANYSNKLYHQLEQETGIQT 119
Cdd:pfam01266   2 VVVIGGGIVGLSTAYELARRGL-SVTLLERGdDPGSGASGRNAGLIHPGLRYlepSELARLALEALDLWEELEEELGIDC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   120 GYLRTGSISLAQTQDRlISLKRINSRLNVVGIPSEIISPKKVAELHPLLNvhDLVGAMYVPEDAVVSSADVALALASAAS 199
Cdd:pfam01266  81 GFRRCGVLVLARDEEE-EALEKLLAALRRLGVPAELLDAEELRELEPLLP--GLRGGLFYPDGGHVDPARLLRALARAAE 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   200 QNGVQIYDRTSVLHvLIKKGQVTGVETDkGQIECqyFVNCAGQWAYELGLSneePLSIPLHACEHFYLLTRPW-DTPLQS 278
Cdd:pfam01266 158 ALGVRIIEGTEVTG-IEEEGGVWGVVTT-GEADA--VVNAAGAWADLLALP---GLRLPVRPVRGQVLVLEPLpEALLIL 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   279 NTPTIVDADGRIYIRN-WQGGILSGGFEKNPKPiftegknqleiQNLREDWDHFEPLLSSLLRRMPALETLEilklvncp 357
Cdd:pfam01266 231 PVPITVDPGRGVYLRPrADGRLLLGGTDEEDGF-----------DDPTPDPEEIEELLEAARRLFPALADIE-------- 291

                         330       340       350
                  ....*....|....*....|....*....|..
gi 38142488   358 ETF-----TPDMKCIMGEsPVVQGYFVLAGMN 384
Cdd:pfam01266 292 RAWaglrpLPDGLPIIGR-PGSPGLYLATGHG 322
gcvT PRK00389
glycine cleavage system aminomethyltransferase GcvT;
456-837 1.51e-37

glycine cleavage system aminomethyltransferase GcvT;


Pssm-ID: 234742 [Multi-domain]  Cd Length: 359  Bit Score: 144.49  E-value: 1.51e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  456 LRTSPLYDRLDAQGARWMEKHGFERP-KYfvppnkdllaleQSktfykpdwfdIVEsEVKCCKEAVCVIDMSSFTKFEIT 534
Cdd:PRK00389   2 LKRTPLYDLHVALGAKMVDFGGWEMPvQY------------GS----------IIE-EHHAVRTDAGLFDVSHMGEVDVT 58

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  535 stGDEALESLQYLFCNDLD-VPVGHIVHTGMLNEYGGYENDCSIARLTKRSFFMI--SPTDQQVhcWAWLNKYLpKDSNL 611
Cdd:PRK00389  59 --GPDALAFLQYLLANDVSkLKPGKAQYTCMLNEDGGVIDDLIVYKLSEDEYLLVvnAANREKD--LAWIKSHA-AGFGV 133

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  612 LLEDVTWKYTALNLIGPRAVDVLSELSYAPMtpDHFPTLFCKEMSVGYANGIRVmSMT-HTGEPGFMLYIPIEYALHVYN 690
Cdd:PRK00389 134 EVTDRSDDLAMIAVQGPKAREKLQKLTDADL--SELKPFFGAQGAEVGGGDVLV-ARTgYTGEDGFEIYLPAEDAEALWD 210

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  691 EVMSVGqkygIRNAGYYALRSLRIEKFFAFWGQDLNTLTTPLECGGESRVKLEKGIDFIGRDALLQQKQTGVYKRLAMF- 769
Cdd:PRK00389 211 ALLEAG----VKPCGLGARDTLRLEAGMPLYGQDMDETITPLEAGLGWTVKLEEKRDFIGREALEAQKEAGVERKLVGLe 286

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  770 -----IlddhdtdldlwPWWGEPIYRNGKYAGKTTSSAYSYTLERHVCLGYVhnfSEDSGEE------------QVVTTD 832
Cdd:PRK00389 287 leergI-----------PRHGYPVLADGEEIGEVTSGTFSPTLGKSIALAYV---PAGVGDEveveirgkqvpaKVVKPP 352


                 ....*
gi 38142488  833 FINRG 837
Cdd:PRK00389 353 FVRRG 357
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
44-244 2.46e-26

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 112.55  E-value: 2.46e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  44 VVICGGGIMGTSVAYHLSK-MGWqDIVLLEQG-RLAAGSTRFCAGILstarHS-------SVEQKMANYSNKLYHQLEQE 114
Cdd:COG0579   7 VVIIGAGIVGLALARELSRyEDL-KVLVLEKEdDVAQESSGNNSGVI----HAglyytpgSLKARLCVEGNELFYELCRE 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488 115 TGIQtgYLRTGSISLAQTQDRLISLKRINSRLNVVGIPS-EIISPKKVAELHPLLNvHDLVGAMYVPEDAVVSSADVALA 193
Cdd:COG0579  82 LGIP--FKRCGKLVVATGEEEVAFLEKLYERGKANGVPGlEILDREELRELEPLLS-DEGVAALYSPSTGIVDPGALTRA 158

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 38142488 194 LASAASQNGVQIYDRTSVLHVLIKKGQVTgVETDKGQIECQYFVNCAGQWA 244
Cdd:COG0579 159 LAENAEANGVELLLNTEVTGIEREGDGWE-VTTNGGTIRARFVINAAGLYA 208
FAO_M pfam16350
FAD dependent oxidoreductase central domain; This domain occurs in several FAD dependent ...
 405-459 5.42e-16

FAD dependent oxidoreductase central domain; This domain occurs in several FAD dependent oxidoreductases: Sarcosine dehydrogenase, Dimethylglycine dehydrogenase and Dimethylglycine dehydrogenase. It is situated between the DAO domain (pfam01266) and the GCV_T domain (pfam01571).


Pssm-ID: 465100  Cd Length: 56  Bit Score: 72.49  E-value: 5.42e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 38142488   405 GYPSENVWELDLQRFGALQSSRTFLRHRVMEVMPLIYDLKVPRWDFQTGRQLRTS 459
Cdd:pfam16350   2 GEPPIDLWECDIRRFGPHQNNREYLRERVAENYGEVYDIHHPNEEREAGRPLRTS 56
dmdA PRK12486
dimethylsulfoniopropionate demethylase;
454-831 4.44e-15

dimethylsulfoniopropionate demethylase;


Pssm-ID: 237113 [Multi-domain]  Cd Length: 368  Bit Score: 77.87  E-value: 4.44e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  454 RQLRTSPLYDRLDAQGArwmekhgferpKYFVPPNKDLLaleqsktfykPDWFDIVESEVKCCKEAVCVIDMSSFTKFEI 533
Cdd:PRK12486   9 RRLRRTPFSDGVEAAGV-----------KAYTVYNHMLL----------PTVFESVEDDYAHLKEHVQVWDVAVERQVEI 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  534 TstGDEALESLQYLFCNDLD-VPVGHIVHTGMLNEYGGYENDCSIARLTKRSFFmISPTDQQVHCWAwlnKYLPKDSNLL 612
Cdd:PRK12486  68 R--GPDAARLVQMLTPRDLRgMKPGQCYYVPIVDETGGMLNDPVALKLAEDRWW-ISIADSDLLLWV---KGLANGRKLD 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  613 LEDVTWKYTALNLIGPRAVDVLSELSYAPMTPDHFptlfckeMSVGYAN--GIRvMSMTHTG---EPGFMLYIP-IEYAL 686
Cdd:PRK12486 142 VLVVEPDVSPLAVQGPKADALMARVFGEAIRDLRF-------FRFGYFDfeGTD-LVIARSGyskQGGFEIYVEgSDLGM 213

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  687 HVYNEVMSVGQKYGIRnAGYYALRSlRIEKFFAFWGQDLNTLTTPLECGGESRVKLEKGIDFIGRDALLQQKQTGVYKRL 766
Cdd:PRK12486 214 PLWDALFEAGKDLNVR-AGCPNLIE-RIEGGLLSYGNDMTRDNTPHECGLGRFCNTQTDIGCIGKDALLRVAKEGPQKQI 291

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38142488  767 AMFILDDHDTDLDLWPWwgePIYRNGKYAGKTTSSAYSYTLERHVCLGYVHNFSEDSGEEQVVTT 831
Cdd:PRK12486 292 RGIKIGGERIPPCDRAW---PLLAGDNRVGQVTSAAYSPDFQTNVAIGMVRMTHWDPGTGLEVET 353
PLN02319 PLN02319
aminomethyltransferase
 562-831 1.81e-13

aminomethyltransferase


Pssm-ID: 177953 [Multi-domain]  Cd Length: 404  Bit Score: 73.22  E-value: 1.81e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  562 TGML----NEYGGYENDCSIARLTKRSFFMI-----SPTDQqvhcwAWLNKYLpKDSNLLLEDVTW----KYTALNLIGP 628
Cdd:PLN02319 112 TGTLsvftNEKGGIIDDTVITKVTDDHIYLVvnagcRDKDL-----AHIEEHM-KAFKAKGGDVSWhvhdERSLLALQGP 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  629 RAVDVLSELSYAPMTPDHFPTLfcKEMSVgyaNGI--RVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKyGIRNAGY 706
Cdd:PLN02319 186 LAAPVLQHLTKEDLSKMYFGDF--RITDI---NGAdcFLTRTGYTGEDGFEISVPSEHAVDLAKALLEKSEG-KVRLTGL 259

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  707 YALRSLRIEKFFAFWGQDLNTLTTPLECG-----GESRvkLEKGiDFIGRDALLQQKQTGVYKRLAMFILDdhdtdldlw 781
Cdd:PLN02319 260 GARDSLRLEAGLCLYGNDLEEHITPVEAGlawtiGKRR--RAEG-GFLGADVILKQLKEGVSRRRVGFISS--------- 327

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 38142488  782 pwwGEP------IY-RNGKYAGKTTSSAYSYTLERHVCLGYVHNFSEDSGEEQVVTT 831
Cdd:PLN02319 328 ---GAParshseILdESGEKIGEVTSGGFSPCLKKNIAMGYVKSGFHKAGTEVKVEV 381
GCV_T_C pfam08669
Glycine cleavage T-protein C-terminal barrel domain; This is a family of glycine cleavage ...
 785-851 1.46e-11

Glycine cleavage T-protein C-terminal barrel domain; This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase.


Pssm-ID: 462554 [Multi-domain]  Cd Length: 80  Bit Score: 60.95  E-value: 1.46e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38142488   785 GEPIYRNGKYAGKTTSSAYSYTLERHVCLGYVHnfsedsgeeqvvtTDFINRG-EYEIDIAGHRFQAK 851
Cdd:pfam08669  18 GEPVLRDGEVVGYVTSGAYSPTLGKSIALAYVD-------------AELAKPGtEVEVEIRGKRVPAT 72
soxA_mon TIGR01377
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of ...
 44-419 1.83e-09

sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]


Pssm-ID: 130444 [Multi-domain]  Cd Length: 380  Bit Score: 60.61  E-value: 1.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488    44 VVICGGGIMGTSVAYHLSKMGwQDIVLLEQGRL--AAGSTRfcaGILSTARHSSVEQ---KMANYSNKLYHQLEQETGIQ 118
Cdd:TIGR01377   3 VIVVGAGIMGCFAAYHLAKHG-KKTLLLEQFDLphSRGSSH---GQSRIIRKAYPEDfytPMMLECYQLWAQLEKEAGTK 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   119 TgYLRTGSISLAQTQDRliSLKRINSRLNVVGIPSEIISPKKVAELHPLLNVHDLVGAMYVPEDAVVSSADVALALASAA 198
Cdd:TIGR01377  79 L-HRQTGLLLLGPKENQ--FLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELA 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   199 SQNGVQIYDRTSVLHVLIKKGQVTgVETDKGQIECQYFVNCAGQWAYEL--GLSNEEPLSiPLHACEHFYLLTRPWDTPL 276
Cdd:TIGR01377 156 EAHGATVRDGTKVVEIEPTELLVT-VKTTKGSYQANKLVVTAGAWTSKLlsPLGIEIPLQ-PLRINVCYWREKEPGSYGV 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   277 QSNTPTIV--DADGRIY---IRNWQG---GILSGGFEKNPKPIFTE-GKNQLEIQNLRedwdHFepllssLLRRMPALET 347
Cdd:TIGR01377 234 SQAFPCFLvlGLNPHIYglpSFEYPGlmkVYYHHGQQIDPDERDCPfGADIEDVQILR----KF------VRDHLPGLNG 303

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38142488   348 lEILKLVNCPETFTPDMKCIMGESPVVQGYFVLAGMNSAGLSLGGGAGKFLAEWMVYGYPSENVWELDLQRF 419
Cdd:TIGR01377 304 -EPKKGEVCMYTNTPDEHFVIDLHPKYDNVVIGAGFSGHGFKLAPVVGKILAELAMKLKPSYDLAIFSLNRF 374
gcvT PRK13579
glycine cleavage system aminomethyltransferase GcvT;
533-816 1.32e-07

glycine cleavage system aminomethyltransferase GcvT;


Pssm-ID: 237435 [Multi-domain]  Cd Length: 370  Bit Score: 54.57  E-value: 1.32e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  533 ITSTGDEALESLQYLFCND-LDVPVGHIVHTGMLNEYGGYENDCSIARLTKRsFFMISPTDQQVHCWAWLNKYLPKDSNL 611
Cdd:PRK13579  63 IEVSGKDAAAALERLVPVDiLALKEGRQRYTFFTNEQGGILDDLMVTNLGDH-LFLVVNAACKDADIAHLREHLSDECEV 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  612 -LLEDvtwkYTALNLIGPRAVDVLSELSyapmtPDHFPTLFckeMSVGyanGIRVMSMT-------HTGEPGFMLYIPIE 683
Cdd:PRK13579 142 nPLDD----RALLALQGPEAEAVLADLG-----PPVAALRF---MDGF---EPRLHGVDcfvsrsgYTGEDGFEISVPAD 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  684 YA------LHVYNEVMSVGqkYGIRNagyyalrSLRIEKFFAFWGQDLNTLTTPLECGGE---SRVKLEKGiDFIGRDAL 754
Cdd:PRK13579 207 AAealaeaLLADPRVEPIG--LGARD-------SLRLEAGLCLYGHDIDTTTTPVEAALEwaiQKARREAG-GFPGAKAI 276

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 38142488  755 LQQKQTGV-YKRLAMFILDDHDTDLdlwpwwGEPIYRN-GKYAGKTTSSAYSYTLERHVCLGYV 816
Cdd:PRK13579 277 LAALAKGAsRRRVGLKPEGRAPVRE------GAPLFDDaGTEIGTVTSGGFGPSVGGPVAMGYV 334
PRK00711 PRK00711
D-amino acid dehydrogenase;
43-231 6.59e-07

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 52.49  E-value: 6.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   43 QVVICGGGIMGTSVAYHLSKMGWQDIVLLEQGRLA-------AG--STRFCA-----GILSTA------RHS-------- 94
Cdd:PRK00711   2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPAletsfanAGqiSPGYAApwaapGVPLKAikwlfqRHAplairpdg 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   95 SVEQ-----KM-------------------ANYSNKLYHQLEQETGIQTGYLRTGSISLAQTQDRLISLKRINSRLNVVG 150
Cdd:PRK00711  82 DPFQlrwmwQMlrnctasryavnksrmvrlAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEAG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  151 IPSEIISPKKVAELHP-LLNV-HDLVGAMYVPEDAV-------VSSADvalalasAASQNGVQIYDRTSVLHVLIKKGQV 221
Cdd:PRK00711 162 VPYELLDRDELAAVEPaLAGVrHKLVGGLRLPNDETgdcqlftQRLAA-------MAEQLGVKFRFNTPVDGLLVEGGRI 234

                        250
                 ....*....|
gi 38142488  222 TGVETDKGQI 231
Cdd:PRK00711 235 TGVQTGGGVI 244
glpA PRK11101
anaerobic glycerol-3-phosphate dehydrogenase subunit A;
39-243 1.69e-06

anaerobic glycerol-3-phosphate dehydrogenase subunit A;


Pssm-ID: 236847 [Multi-domain]  Cd Length: 546  Bit Score: 51.56  E-value: 1.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   39 PAQAQVVICGGGIMGTSVAYHLSKMGWqDIVLLEQGRLAAGSTRFCAGIL-STARHSSVEQKMAN---YSNKLY-----H 109
Cdd:PRK11101   4 SQETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIATGATGRNHGLLhSGARYAVTDAESAReciSENQILkriarH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  110 QLEQETGIqtgylrtgSISLAQtqDRLISLKRINSRLNVVGIPSEIISPKKVAELHPLLNvHDLVGAMYVPEDAV----V 185
Cdd:PRK11101  83 CVEPTDGL--------FITLPE--DDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVN-PALIGAVKVPDGTVdpfrL 151

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 38142488  186 SSADValalaSAASQNGVQIYDRTSVLHVLIKKGQVTGVET------DKGQIECQYFVNCAGQW 243
Cdd:PRK11101 152 TAANM-----LDAKEHGAQILTYHEVTGLIREGDTVCGVRVrdhltgETQEIHAPVVVNAAGIW 210
solA PRK11259
N-methyl-L-tryptophan oxidase;
44-262 2.66e-06

N-methyl-L-tryptophan oxidase;


Pssm-ID: 236887 [Multi-domain]  Cd Length: 376  Bit Score: 50.60  E-value: 2.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   44 VVICGGGIMGTSVAYHLSKMGwQDIVLLEQGRL--AAGS----TRfcagILstaRHSSVEQK----MANYSNKLYHQLEQ 113
Cdd:PRK11259   6 VIVIGLGSMGSAAGYYLARRG-LRVLGLDRFMPphQQGSshgdTR----II---RHAYGEGPayvpLVLRAQELWRELER 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  114 ETGiQTGYLRTGSISLAQTQDRLISLKRINSRLNvvGIPSEIISPKKVAELHPLLNVHD-LVG-----AMYV-PEDAVVS 186
Cdd:PRK11259  78 ESG-EPLFVRTGVLNLGPADSDFLANSIRSARQH--GLPHEVLDAAEIRRRFPQFRLPDgYIAlfepdGGFLrPELAIKA 154

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38142488  187 SADVALalasaasQNGVQIYDRTSVLHVLIKKGQVTgVETDKGQIECQYFVNCAGQWAYELgLSneePLSIPLHAC 262
Cdd:PRK11259 155 HLRLAR-------EAGAELLFNEPVTAIEADGDGVT-VTTADGTYEAKKLVVSAGAWVKDL-LP---PLELPLTPV 218
PRK11728 PRK11728
L-2-hydroxyglutarate oxidase;
44-241 4.13e-06

L-2-hydroxyglutarate oxidase;


Pssm-ID: 183292 [Multi-domain]  Cd Length: 393  Bit Score: 50.21  E-value: 4.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488   44 VVICGGGIMGTSVAYHLSK-MGWQDIVLLE-QGRLAAGSTRFCAGILstarHS-------SVEQKMANYSNKLYHQLEQE 114
Cdd:PRK11728   5 FVIIGGGIVGLSTAMQLQErYPGARIAVLEkESGPARHQTGHNSGVI----HAgvyytpgSLKARFCRRGNEATKAFCDQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38142488  115 TGIqtGYLRTGSISLAQTQDRLISLKRINSRLNVVGIPSEIISPKKVAELHPllNVHDLvGAMYVPEDAVVSSADVALAL 194
Cdd:PRK11728  81 HGI--PYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREP--NIRGL-GAIFVPSTGIVDYRAVAEAM 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 38142488  195 ASAASQNGVQIYDRTSVLHVLIKKGQVTgVETDKGQIECQYFVNCAG 241
Cdd:PRK11728 156 AELIQARGGEIRLGAEVTALDEHANGVV-VRTTQGEYEARTLINCAG 201
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 44-74 2.32e-03

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 41.36  E-value: 2.32e-03
                        10        20        30
                ....*....|....*....|....*....|.
gi 38142488  44 VVICGGGIMGTSVAYHLSKMGwQDIVLLEQG 74
Cdd:COG1232   4 VAVIGGGIAGLTAAYRLAKAG-HEVTVLEAS 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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