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Conserved domains on  [gi|46371998|ref|NP_997053|]
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pre-mRNA-splicing factor SYF2 isoform 2 [Homo sapiens]

Protein Classification

pre-mRNA-splicing factor SYF2( domain architecture ID 10548813)

pre-mRNA-splicing factor SYF2 is involved in pre-mRNA splicing as a component of the spliceosome

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SYF2 pfam08231
SYF2 splicing factor; Proteins in this family are involved in cell cycle progression and ...
48-196 1.21e-66

SYF2 splicing factor; Proteins in this family are involved in cell cycle progression and pre-mRNA splicing.


:

Pssm-ID: 462400 [Multi-domain]  Cd Length: 152  Bit Score: 201.29  E-value: 1.21e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46371998    48 ARGEDYEKVKLLEISAEDAERWERK--KKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGE---EFFPTS 122
Cdd:pfam08231   1 EAGEDYERKRALDWTAEEAEKWDKKkkKKAKNPDFGFSDYAQAAYRQYKRLLKNIKPDLEAYEKQKEKAGErveAFYRTA 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 46371998   123 NSLlhGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLE 196
Cdd:pfam08231  81 DSY--ADHKPSKEAIDRMVEDLEKQEEKRLKFSRRRGHDDDADVDYINERNKKFNKKLERFYDKYTAEIRQNLE 152
 
Name Accession Description Interval E-value
SYF2 pfam08231
SYF2 splicing factor; Proteins in this family are involved in cell cycle progression and ...
48-196 1.21e-66

SYF2 splicing factor; Proteins in this family are involved in cell cycle progression and pre-mRNA splicing.


Pssm-ID: 462400 [Multi-domain]  Cd Length: 152  Bit Score: 201.29  E-value: 1.21e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46371998    48 ARGEDYEKVKLLEISAEDAERWERK--KKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGE---EFFPTS 122
Cdd:pfam08231   1 EAGEDYERKRALDWTAEEAEKWDKKkkKKAKNPDFGFSDYAQAAYRQYKRLLKNIKPDLEAYEKQKEKAGErveAFYRTA 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 46371998   123 NSLlhGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLE 196
Cdd:pfam08231  81 DSY--ADHKPSKEAIDRMVEDLEKQEEKRLKFSRRRGHDDDADVDYINERNKKFNKKLERFYDKYTAEIRQNLE 152
 
Name Accession Description Interval E-value
SYF2 pfam08231
SYF2 splicing factor; Proteins in this family are involved in cell cycle progression and ...
48-196 1.21e-66

SYF2 splicing factor; Proteins in this family are involved in cell cycle progression and pre-mRNA splicing.


Pssm-ID: 462400 [Multi-domain]  Cd Length: 152  Bit Score: 201.29  E-value: 1.21e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46371998    48 ARGEDYEKVKLLEISAEDAERWERK--KKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGE---EFFPTS 122
Cdd:pfam08231   1 EAGEDYERKRALDWTAEEAEKWDKKkkKKAKNPDFGFSDYAQAAYRQYKRLLKNIKPDLEAYEKQKEKAGErveAFYRTA 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 46371998   123 NSLlhGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLE 196
Cdd:pfam08231  81 DSY--ADHKPSKEAIDRMVEDLEKQEEKRLKFSRRRGHDDDADVDYINERNKKFNKKLERFYDKYTAEIRQNLE 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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