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Conserved domains on  [gi|46488937|ref|NP_997468|]
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interferon alpha/beta receptor 2 isoform a precursor [Homo sapiens]

Protein Classification

Tissue_fac and Interfer-bind domain-containing protein( domain architecture ID 10471435)

Tissue_fac and Interfer-bind domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tissue_fac pfam01108
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 8-120 8.22e-28

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


:

Pssm-ID: 460067  Cd Length: 107  Bit Score: 107.08  E-value: 8.22e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46488937     8 FIFRSLNLVLMVYISLVFGISYDSPDytdescTFKISLRNFRSILSWELKNHSIVPTHYTLLYtIMSKPEDLKVVKNCAN 87
Cdd:pfam01108   1 LLTLLLGLLLLALASAAGGPSLPAPQ------NVTFQSTNFKNILTWEPGPNSPPDVVYTVQY-KIYGSGDWKNVPNCTN 73

                          90       100       110
                  ....*....|....*....|....*....|...
gi 46488937    88 TTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF 120
Cdd:pfam01108  74 ITRTECDLTDETSDLTETYYARVRAVSGGGTSS 106
Interfer-bind pfam09294
Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary ...
 132-231 1.29e-16

Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha.


:

Pssm-ID: 462746  Cd Length: 103  Bit Score: 75.46  E-value: 1.29e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46488937   132 MSFEPPEFEIVGFTNHINVMVKFP-------SIVEEELQfDLSLVIEeqsegIVKKHKPEIKGNMSGNFT-YIIDKLIPN 203
Cdd:pfam09294   1 TIIGPPEVELEVEGGSLNVTVKDPetregknLSLRDLYG-SLQYRVS-----YWKNSSNGEKKNTTSTNSfVVLSDLEPG 74

                          90       100
                  ....*....|....*....|....*....
gi 46488937   204 TNYCVSVY-LEHSDEQAVIKSPLKCTLLP 231
Cdd:pfam09294  75 TTYCVSVQaFSPLDNKSSQRSPPQCIRTT 103
 
Name Accession Description Interval E-value
Tissue_fac pfam01108
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 8-120 8.22e-28

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


Pssm-ID: 460067  Cd Length: 107  Bit Score: 107.08  E-value: 8.22e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46488937     8 FIFRSLNLVLMVYISLVFGISYDSPDytdescTFKISLRNFRSILSWELKNHSIVPTHYTLLYtIMSKPEDLKVVKNCAN 87
Cdd:pfam01108   1 LLTLLLGLLLLALASAAGGPSLPAPQ------NVTFQSTNFKNILTWEPGPNSPPDVVYTVQY-KIYGSGDWKNVPNCTN 73

                          90       100       110
                  ....*....|....*....|....*....|...
gi 46488937    88 TTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF 120
Cdd:pfam01108  74 ITRTECDLTDETSDLTETYYARVRAVSGGGTSS 106
Interfer-bind pfam09294
Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary ...
 132-231 1.29e-16

Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha.


Pssm-ID: 462746  Cd Length: 103  Bit Score: 75.46  E-value: 1.29e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46488937   132 MSFEPPEFEIVGFTNHINVMVKFP-------SIVEEELQfDLSLVIEeqsegIVKKHKPEIKGNMSGNFT-YIIDKLIPN 203
Cdd:pfam09294   1 TIIGPPEVELEVEGGSLNVTVKDPetregknLSLRDLYG-SLQYRVS-----YWKNSSNGEKKNTTSTNSfVVLSDLEPG 74

                          90       100
                  ....*....|....*....|....*....
gi 46488937   204 TNYCVSVY-LEHSDEQAVIKSPLKCTLLP 231
Cdd:pfam09294  75 TTYCVSVQaFSPLDNKSSQRSPPQCIRTT 103
 
Name Accession Description Interval E-value
Tissue_fac pfam01108
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 8-120 8.22e-28

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


Pssm-ID: 460067  Cd Length: 107  Bit Score: 107.08  E-value: 8.22e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46488937     8 FIFRSLNLVLMVYISLVFGISYDSPDytdescTFKISLRNFRSILSWELKNHSIVPTHYTLLYtIMSKPEDLKVVKNCAN 87
Cdd:pfam01108   1 LLTLLLGLLLLALASAAGGPSLPAPQ------NVTFQSTNFKNILTWEPGPNSPPDVVYTVQY-KIYGSGDWKNVPNCTN 73

                          90       100       110
                  ....*....|....*....|....*....|...
gi 46488937    88 TTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF 120
Cdd:pfam01108  74 ITRTECDLTDETSDLTETYYARVRAVSGGGTSS 106
Interfer-bind pfam09294
Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary ...
 132-231 1.29e-16

Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha.


Pssm-ID: 462746  Cd Length: 103  Bit Score: 75.46  E-value: 1.29e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46488937   132 MSFEPPEFEIVGFTNHINVMVKFP-------SIVEEELQfDLSLVIEeqsegIVKKHKPEIKGNMSGNFT-YIIDKLIPN 203
Cdd:pfam09294   1 TIIGPPEVELEVEGGSLNVTVKDPetregknLSLRDLYG-SLQYRVS-----YWKNSSNGEKKNTTSTNSfVVLSDLEPG 74

                          90       100
                  ....*....|....*....|....*....
gi 46488937   204 TNYCVSVY-LEHSDEQAVIKSPLKCTLLP 231
Cdd:pfam09294  75 TTYCVSVQaFSPLDNKSSQRSPPQCIRTT 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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