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Conserved domains on  [gi|1446500442|ref|NP_998607|]
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serine/arginine repetitive matrix protein 1 isoform 2 [Danio rerio]

Protein Classification

PWI and PHA03307 domain-containing protein( domain architecture ID 13658714)

PWI and PHA03307 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.27e-39

PWI domain;


:

Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 139.18  E-value: 3.27e-39
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  46 EVIKPWITQRVTEILGFEDDVVIEFVFNQLEEKNPDGKMMQINLTGFLNgKNAREFMKDLWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 469-786 1.47e-08

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 59.03  E-value: 1.47e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  469 AGARNGEIRRRRSHSPASPRRRHRDASPRKRRSPSPPGRRHRSQSPVRRRRSPSPPPRRRSPSPPPRRFTPPIQRRYSPP 548
Cdd:PHA03307    73 PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  549 SPSPAQKRRSSGSPPKRRRS--PSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPmskRRTSPSVSKRRTSPSPVAKHRR 626
Cdd:PHA03307   153 PAAGASPAAVASDAASSRQAalPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP---RRSSPISASASSPAPAPGRSAA 229

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  627 SPSPMSKRRTCASPVSKRRNSP-SPAPQRRSSPSPMPKHRGSPSPVTKRHTSRSPKRSRGTSPGKRRTPPSSASPPPRHr 705
Cdd:PHA03307   230 DDAGASSSDSSSSESSGCGWGPeNECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPA- 308

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  706 rNSPNPPAAQRGRDTRSSPPAhTTRVSSSPPGRYGASGSSPQRQRRQTSPSHSTRPirrvsrtPEPRKSQRGSQSPPPER 785
Cdd:PHA03307   309 -PSSPRASSSSSSSRESSSSS-TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADP-------SSPRKRPRPSRAPSSPA 379


                   .
gi 1446500442  786 R 786
Cdd:PHA03307   380 A 380
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.27e-39

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 139.18  E-value: 3.27e-39
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  46 EVIKPWITQRVTEILGFEDDVVIEFVFNQLEEKNPDGKMMQINLTGFLNgKNAREFMKDLWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 7.06e-26

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 101.65  E-value: 7.06e-26
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1446500442   40 MTKVNLEVIKPWITQRVTEILGFEDDVVIEFVFNQLE-EKNPDGKMMQINLTGFLngkNAREFMKDLWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRqHKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 469-786 1.47e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 59.03  E-value: 1.47e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  469 AGARNGEIRRRRSHSPASPRRRHRDASPRKRRSPSPPGRRHRSQSPVRRRRSPSPPPRRRSPSPPPRRFTPPIQRRYSPP 548
Cdd:PHA03307    73 PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  549 SPSPAQKRRSSGSPPKRRRS--PSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPmskRRTSPSVSKRRTSPSPVAKHRR 626
Cdd:PHA03307   153 PAAGASPAAVASDAASSRQAalPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP---RRSSPISASASSPAPAPGRSAA 229

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  627 SPSPMSKRRTCASPVSKRRNSP-SPAPQRRSSPSPMPKHRGSPSPVTKRHTSRSPKRSRGTSPGKRRTPPSSASPPPRHr 705
Cdd:PHA03307   230 DDAGASSSDSSSSESSGCGWGPeNECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPA- 308

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  706 rNSPNPPAAQRGRDTRSSPPAhTTRVSSSPPGRYGASGSSPQRQRRQTSPSHSTRPirrvsrtPEPRKSQRGSQSPPPER 785
Cdd:PHA03307   309 -PSSPRASSSSSSSRESSSSS-TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADP-------SSPRKRPRPSRAPSSPA 379


                   .
gi 1446500442  786 R 786
Cdd:PHA03307   380 A 380
SWIRM-assoc_2 pfam16496
SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex ...
 547-632 8.17e-04

SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465143  Cd Length: 412  Bit Score: 42.72  E-value: 8.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 547 PPSPSPAQKRRSSGSPPKRRRSPSPmpkrriPPSPPPKRRMSPSPPPKRRKSPSPmsKRRTSPSVSKRRTSPSPVAKHRR 626
Cdd:pfam16496 275 MSSPDPDRKDKKSSPGKKRKRSPSP------PPTPVGKKKSGRKGSPARRKKRRR--EEEEEEDLTKDMEDPTPVPNIEE 346


                  ....*.
gi 1446500442 627 SPSPMS 632
Cdd:pfam16496 347 VNLPKN 352
BimA_second NF040983
trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia ...
 548-619 2.49e-03

trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia intracellular motility A), WP_004266405.1-like proteins in Burkholderia mallei or B. pseudomallei. The term BimA has also been used for WP_011205626.1-like homologs that have a very different N-terminal half.


Pssm-ID: 468913 [Multi-domain]  Cd Length: 382  Bit Score: 41.04  E-value: 2.49e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1446500442 548 PSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRTSPS 619
Cdd:NF040983   90 PPPPPPPPPPPPPPPTPPPPPPPPPPPPPPSPPPPPPPSPPPSPPPPTTTPPTRTTPSTTTPTPSMHPIQPT 161
BimA_second NF040983
trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia ...
 562-631 7.24e-03

trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia intracellular motility A), WP_004266405.1-like proteins in Burkholderia mallei or B. pseudomallei. The term BimA has also been used for WP_011205626.1-like homologs that have a very different N-terminal half.


Pssm-ID: 468913 [Multi-domain]  Cd Length: 382  Bit Score: 39.89  E-value: 7.24e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 562 PPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRTSPSPVAKHRRSPSPM 631
Cdd:NF040983   94 PPPPPPPPPPPTPPPPPPPPPPPPPPSPPPPPPPSPPPSPPPPTTTPPTRTTPSTTTPTPSMHPIQPTQL 163
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.27e-39

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 139.18  E-value: 3.27e-39
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  46 EVIKPWITQRVTEILGFEDDVVIEFVFNQLEEKNPDGKMMQINLTGFLNgKNAREFMKDLWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 7.06e-26

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 101.65  E-value: 7.06e-26
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1446500442   40 MTKVNLEVIKPWITQRVTEILGFEDDVVIEFVFNQLE-EKNPDGKMMQINLTGFLngkNAREFMKDLWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRqHKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 469-786 1.47e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 59.03  E-value: 1.47e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  469 AGARNGEIRRRRSHSPASPRRRHRDASPRKRRSPSPPGRRHRSQSPVRRRRSPSPPPRRRSPSPPPRRFTPPIQRRYSPP 548
Cdd:PHA03307    73 PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  549 SPSPAQKRRSSGSPPKRRRS--PSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPmskRRTSPSVSKRRTSPSPVAKHRR 626
Cdd:PHA03307   153 PAAGASPAAVASDAASSRQAalPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP---RRSSPISASASSPAPAPGRSAA 229

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  627 SPSPMSKRRTCASPVSKRRNSP-SPAPQRRSSPSPMPKHRGSPSPVTKRHTSRSPKRSRGTSPGKRRTPPSSASPPPRHr 705
Cdd:PHA03307   230 DDAGASSSDSSSSESSGCGWGPeNECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPA- 308

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  706 rNSPNPPAAQRGRDTRSSPPAhTTRVSSSPPGRYGASGSSPQRQRRQTSPSHSTRPirrvsrtPEPRKSQRGSQSPPPER 785
Cdd:PHA03307   309 -PSSPRASSSSSSSRESSSSS-TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADP-------SSPRKRPRPSRAPSSPA 379


                   .
gi 1446500442  786 R 786
Cdd:PHA03307   380 A 380
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 361-670 1.76e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 58.64  E-value: 1.76e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  361 SATPPRKLARRTDLSSPPRRRGRSPSGPDTSPSAGKHRPGGRNDSRSPSPKPRRSDASDSeedklGKGSTADSVQQRRQY 440
Cdd:PHA03307   129 SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSS-----PPAEPPPSTPPAAAS 203

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  441 RRQNQQSSSDTGSSSSSEDEGPRRQNRGAGARN-GEIRRRRSHSPASPRRRHRDASPRKRRSPSPPGRRHRSQSPVRRRR 519
Cdd:PHA03307   204 PRPPRRSSPISASASSPAPAPGRSAADDAGASSsDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPG 283

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  520 SPSPPPRRRSPSPPPRRFTPPIQRRYSPPSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSP 599
Cdd:PHA03307   284 PASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPS 363

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1446500442  600 SPMSKRRTSPSVSKRRTSPspvakhrRSPSPMSKRRTCASPvSKRRNSPSPAPQRRSSPSPMPKHRGSPSP 670
Cdd:PHA03307   364 SPRKRPRPSRAPSSPAASA-------GRPTRRRARAAVAGR-ARRRDATGRFPAGRPRPSPLDAGAASGAF 426
PHA03247 PHA03247
large tegument protein UL36; Provisional
 356-786 1.96e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 58.41  E-value: 1.96e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  356 AGKRGSATPPRKLARRTDLSSPPRRRGRSPSGPdtSPSAGKHRPGGrnDSRSPSPKPRRSDASDSEEDKLGKGSTADSVQ 435
Cdd:PHA03247  2548 AGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEP--AVTSRARRPDA--PPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA 2623

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  436 QRRQYRRQNQQSSSDTGSSSSSEDEGPRRQNRGAGARNGeiRRRRSHSPASPrrrhrdasPRKRRSPSPPGRRHRSQSPV 515
Cdd:PHA03247  2624 PDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVS--RPRRARRLGRA--------AQASSPPQRPRRRAARPTVG 2693

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  516 RRRRSPSPPPRRRSPSPPPRRFTPPIqrrysPPSPSPAQKRRSSGSPPKRRRSPS-------PMPKRRIPPSPPPKRRMS 588
Cdd:PHA03247  2694 SLTSLADPPPPPPTPEPAPHALVSAT-----PLPPGPAAARQASPALPAAPAPPAvpagpatPGGPARPARPPTTAGPPA 2768

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  589 PSPPPKRRKSPSPMSKRRTSPSVSKRRTS----PSPVAKHRRSPSPMSKRRTCASPVSKRRNSPSPAPQRRSSPSPMP-- 662
Cdd:PHA03247  2769 PAPPAAPAAGPPRRLTRPAVASLSESRESlpspWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPpp 2848

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  663 --------------KHRGSP-SPVTKRHTSRSPKRSRGTSPGKRRTPPSSASPPPRHRRnSPNPPAAQRGRDTRSSPPAH 727
Cdd:PHA03247  2849 slplggsvapggdvRRRPPSrSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER-PPQPQAPPPPQPQPQPPPPP 2927

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1446500442  728 TTRVSSSPPGR--------------YGASGSSPQRQRRQTSPSHSTRPIRRVsrtPEPRKSQRGSQSPPPERR 786
Cdd:PHA03247  2928 QPQPPPPPPPRpqpplapttdpagaGEPSGAVPQPWLGALVPGRVAVPRFRV---PQPAPSREAPASSTPPLT 2997
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 485-805 2.29e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 58.26  E-value: 2.29e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  485 ASPRRRHRDASPRKRRSPSPPGRRHRSQSPVRRRRSPSPPPRRRSPSPPPRRFTPPIQRRYSPPSPSPAQKRRSSGSPPK 564
Cdd:PHA03307    61 ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRP 140

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  565 RRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRTSPSPVAKHRRSPSPMSKRRTCASPVSKR 644
Cdd:PHA03307   141 VGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSP 220

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  645 RNSPSPAPQRRSSPSPMPKHRGSPSPVTKRHTSRSPKRSRGTSPGKRRTPPSSASPPPRHRRNSPNPPAAQRGRDTRSSP 724
Cdd:PHA03307   221 APAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSP 300

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  725 PAHTTRVSSSPPGRYGASGSSPQRQRRQTSPSHSTRPIRRVSRTPEPRKSQRGSQSPPPERRQVSRSPSASPPPAQKRPA 804
Cdd:PHA03307   301 SSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAA 380


                   .
gi 1446500442  805 S 805
Cdd:PHA03307   381 S 381
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 462-783 2.72e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 57.87  E-value: 2.72e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  462 PRRQNRGAGARNGEIRRRRSHSPASPRRRHRDASPRKRRSPSPPGrrHRSQSPVRRRRSPSPPPRRRSPSPPPRRFTPPI 541
Cdd:PHA03307   101 AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPG--PPPAASPPAAGASPAAVASDAASSRQAALPLSS 178

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  542 QRRYSPPSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRT-SPSP 620
Cdd:PHA03307   179 PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENeCPLP 258

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  621 VAKHRRSPS-PMSKRRTCASPVSKRRNSPSPAPQRRSSPSPMPKHRGSPSPVTKRH-------TSRSPKRSRGTSPGKRR 692
Cdd:PHA03307   259 RPAPITLPTrIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRAsssssssRESSSSSTSSSSESSRG 338

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  693 TPPSSASPPPRHRRNSPNPPAAQRGRDTRSSPPAHTTRVSSSPPGR---YGASGSSPQRQRRQTSPSHSTRPIRRVSRTP 769
Cdd:PHA03307   339 AAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRptrRRARAAVAGRARRRDATGRFPAGRPRPSPLD 418

                          330
                   ....*....|....
gi 1446500442  770 EPRKSQRGSQSPPP 783
Cdd:PHA03307   419 AGAASGAFYARYPL 432
PHA03247 PHA03247
large tegument protein UL36; Provisional
 360-774 2.76e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 58.03  E-value: 2.76e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  360 GSATPPRKLARRTDLSSPPRRRGRSPSGPDTSPSAGKHRPGGRNDSRSPSPKPRRSDASDSeedklgKGSTADSVQQRRQ 439
Cdd:PHA03247  2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT------VGSLTSLADPPPP 2704

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  440 YRRQNQQSSSDTGSSSSSEDEGPRRQNRGAGARNGEIRRRRSH--SPASPRRRHRDASPRKRRSPSPPgrrhrsqspvrr 517
Cdd:PHA03247  2705 PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGPARPARPPTTAGPPAPAPP------------ 2772

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  518 rrspsppprrrspsppPRRFTPPIQRRYSPPSPSPAQKRRSSGSPPKRRRSPSPMPKRRiPPSPPPKRRMSPSPPPKRRK 597
Cdd:PHA03247  2773 ----------------AAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA-AALPPAASPAGPLPPPTSAQ 2835

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  598 SPSPMSKRRTSPSVSKRRTSPSPVAKHRRSPSPMSKRRTCASPVSKR-RNSPSPAPQRRSSPSPMPkhrgsPSPVTKRHT 676
Cdd:PHA03247  2836 PTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPvRRLARPAVSRSTESFALP-----PDQPERPPQ 2910

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  677 SRSPKRSRgTSPGKRRTPPSSASPPPRHRRNSPNPPAAQRGRDTRSSPPAHTTRVSSSPPGRYGASgsspqrqRRQTSPS 756
Cdd:PHA03247  2911 PQAPPPPQ-PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP-------RFRVPQP 2982

                          410
                   ....*....|....*...
gi 1446500442  757 HSTRPIrRVSRTPEPRKS 774
Cdd:PHA03247  2983 APSREA-PASSTPPLTGH 2999
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 376-689 3.05e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 54.41  E-value: 3.05e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  376 SPPRRRGRSPSGPDT--SPSAGKHRPGGRNDSRSPSPKPRRSDASDSEEDK-------LGKGSTADSVQQRRQYRRQNQQ 446
Cdd:PHA03307    99 SPAREGSPTPPGPSSpdPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAasppaagASPAAVASDAASSRQAALPLSS 178

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  447 SSSDTGSSSSSEDEGPRRQNRGAGARngeiRRRRSHSPASPRRRHRDASPrKRRSPSPPGRRHRSQSPVRRRRSPSPPPR 526
Cdd:PHA03307   179 PEETARAPSSPPAEPPPSTPPAAASP----RPPRRSSPISASASSPAPAP-GRSAADDAGASSSDSSSSESSGCGWGPEN 253

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  527 RRSPSPPPRRFTPPIQRRYSPPSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSpmSKRR 606
Cdd:PHA03307   254 ECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSS--STSS 331

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  607 TSPSVSKRRTSPSPVAKHRRSPSPMSKRRTCASPVSKRRNSPSPAPQRRSSPSPMPKHRGSPSPVTKRHTSRSPKRSRGT 686
Cdd:PHA03307   332 SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGR 411


                   ...
gi 1446500442  687 SPG 689
Cdd:PHA03307   412 PRP 414
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 376-750 6.82e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 53.25  E-value: 6.82e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  376 SPPRRRGRSPSGPDTSPSAGKHRPGGRNDSRSPSPKPRRSDASDSeedklgkGSTADSVQQRRQYRRQNQQSSSDTGSSS 455
Cdd:PHA03307    79 APANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPP-------ASPPPSPAPDLSEMLRPVGSPGPPPAAS 151

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  456 SSEDEGPRRQNRGAGARNGEIRrrrSHSPASPRRRHRDASPRKRRSPSPPGRRHRSQSPVRRRRSPSPPPRRRSPSPPPR 535
Cdd:PHA03307   152 PPAAGASPAAVASDAASSRQAA---LPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSA 228

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  536 RFTPPIQRRYSPPSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRR 615
Cdd:PHA03307   229 ADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPA 308

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  616 TSPSPVAKHRRSPSPMSKRRTCASPVSKRRNSPSPAPQRRSSPSPmpkhrGSPSPVTkrhTSRSPKRSRGTSPGKRRTPP 695
Cdd:PHA03307   309 PSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSP-----SRPPPPA---DPSSPRKRPRPSRAPSSPAA 380

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1446500442  696 SSASPPPRHRRNSPNPPAAQRGRdtrsSPPAHTTRVSSSPPGRYGASGSSPQRQR 750
Cdd:PHA03307   381 SAGRPTRRRARAAVAGRARRRDA----TGRFPAGRPRPSPLDAGAASGAFYARYP 431
PHA03247 PHA03247
large tegument protein UL36; Provisional
 355-670 9.92e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 9.92e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  355 RAGKRGSATP--PRKLARRTDLSSPPRrrGRSPSGPDTSPSAGKHRPGGRNDSRSPSPKPRRSDASDSEEDKLGKGStAD 432
Cdd:PHA03247  2742 PAVPAGPATPggPARPARPPTTAGPPA--PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA-AL 2818

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  433 SVQQRRQYRRQNQQSSSDTGSSSSSEDEGPRRQNRGAGARNGEIRRRrshspasprrrhrdasPRKRRSPSPPGRRHRsq 512
Cdd:PHA03247  2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRR----------------PPSRSPAAKPAAPAR-- 2880

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  513 spvrrrrspsppprrrspsppprrftPPIQRRYSPPSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPP 592
Cdd:PHA03247  2881 --------------------------PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP 2934

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1446500442  593 PKRRKSPSPMSKRRTSPSvskrrTSPSPVAkhrrsPSPMSKRRTCASPVSKRRNSPSPAPQRRSSPSPMPKHRGSPSP 670
Cdd:PHA03247  2935 PPPRPQPPLAPTTDPAGA-----GEPSGAV-----PQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLS 3002
PHA03378 PHA03378
EBNA-3B; Provisional
 548-670 4.94e-06

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 50.45  E-value: 4.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 548 PSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRTSPSPVAKHRRS 627
Cdd:PHA03378  676 PSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR 755

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1446500442 628 PSPMSKRRtcASPVSKRRNSPSPAPQRRSSPSPMPKHRGSPSP 670
Cdd:PHA03378  756 PPAAAPGR--ARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTP 796
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 546-681 1.57e-05

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 48.57  E-value: 1.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 546 SPPSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPsvskrrtSPSPVAKHR 625
Cdd:PHA03269   21 NLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDP-------APAPHQAAS 93

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1446500442 626 RSPSPMSKRRTCASPVSKRRNSPSPAPQRRSSPSPMPKHRGSPSPVTKRHTSRSPK 681
Cdd:PHA03269   94 RAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPP 149
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 548-755 2.82e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.59  E-value: 2.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 548 PSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRTSPSPVAkhRRS 627
Cdd:PRK07764  588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDA--SDG 665

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 628 PSPMSKRRTCASPVskrrnSPSPAPQRRSSPSPMPkhRGSPSPVTKRHTSRSPKRSRGTSPGKRRTPPSSASPPPRHRRN 707
Cdd:PRK07764  666 GDGWPAKAGGAAPA-----APPPAPAPAAPAAPAG--AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDP 738

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1446500442 708 SPNPPAAQRGRDTRSSPPAHTTRVSSSPPGRYGASGSSPQRQRRQTSP 755
Cdd:PRK07764  739 VPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
PHA03247 PHA03247
large tegument protein UL36; Provisional
 536-785 3.58e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 3.58e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  536 RFTPPIQRRYSPPS-PSP--------------------------AQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMS 588
Cdd:PHA03247  2500 GGGPPDPDAPPAPSrLAPailpdepvgepvhprmltwirgleelASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSE 2579

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  589 PSPPPKRRKSPSPMSKRRTSPSVSKRRTSPSPVAKHRRSPSPMSKRRTCASPvSKRRNSPSPAPQRRSSPSPMPKHRGSP 668
Cdd:PHA03247  2580 PAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSP-SPAANEPDPHPPPTVPPPERPRDDPAP 2658

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  669 SPVTKRHTSRSPKRSRGTSPGKRRTPPSSASPPPRHRRNSPNPPAAQRgrdTRSSPPAHTTRVSSSPPGRYGASGSSPQR 748
Cdd:PHA03247  2659 GRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPP---TPEPAPHALVSATPLPPGPAAARQASPAL 2735

                          250       260       270
                   ....*....|....*....|....*....|....*...
gi 1446500442  749 QRRQTSPSHSTRPIRRVSRTPEPRK-SQRGSQSPPPER 785
Cdd:PHA03247  2736 PAAPAPPAVPAGPATPGGPARPARPpTTAGPPAPAPPA 2773
PHA03132 PHA03132
thymidine kinase; Provisional
 557-731 5.52e-04

thymidine kinase; Provisional


Pssm-ID: 222997 [Multi-domain]  Cd Length: 580  Bit Score: 43.60  E-value: 5.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 557 RSSGSPPKRRRSPSPMPKRriPPSPPPKRRMSPSPPPKRRKSPspmSKRRTSPSVSKRRTSPSPVAKHRRSPSPMSKRRT 636
Cdd:PHA03132   58 RETGSGGGVATSTIYTVPR--PPRGPEQTLDKPDSLPASRELP---PGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNF 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 637 CASPVSKRRNSPS------PAPQRRSSPSPMPKHR------GSPSPVTKRHT-SRSPKRSRGTSPGKRRTPPSSASPPPR 703
Cdd:PHA03132  133 PVILAPIGESNSSseelseEEEHSRPPPSESLKVKnggkvyPKGFSKHKTHKrSEFSGLTKKAARKRKGSFVFKPSQLKE 212

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1446500442 704 HRRNSPNP-----PAAQRGRDTRSSPPAHTTRV 731
Cdd:PHA03132  213 LSGSLKNLlhlddSAETDPATRQVPVPVHVLYP 245
SWIRM-assoc_2 pfam16496
SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex ...
 547-632 8.17e-04

SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465143  Cd Length: 412  Bit Score: 42.72  E-value: 8.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 547 PPSPSPAQKRRSSGSPPKRRRSPSPmpkrriPPSPPPKRRMSPSPPPKRRKSPSPmsKRRTSPSVSKRRTSPSPVAKHRR 626
Cdd:pfam16496 275 MSSPDPDRKDKKSSPGKKRKRSPSP------PPTPVGKKKSGRKGSPARRKKRRR--EEEEEEDLTKDMEDPTPVPNIEE 346


                  ....*.
gi 1446500442 627 SPSPMS 632
Cdd:pfam16496 347 VNLPKN 352
PHA03247 PHA03247
large tegument protein UL36; Provisional
 538-771 9.53e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.39  E-value: 9.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  538 TPPIQRRYSPPSPSPAQKRRSSGSPPKRR----RSPSPMPKRRIPPSPPPKRRMSPS--------PPPKRRKSPSPMSKR 605
Cdd:PHA03247   245 SHPLRGDIAAPAPPPVVGEGADRAPETARgatgPPPPPEAAAPNGAAAPPDGVWGAAlagaplalPAPPDPPPPAPAGDA 324

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  606 RTSPSVSKRRTSPSPVAKHR-RSPSPMSKRR--TCASPVSKRRNSPSPAPQRRSSPspmpkhrgspsPVTKRHTSRSPKR 682
Cdd:PHA03247   325 EEEDDEDGAMEVVSPLPRPRqHYPLGFPKRRrpTWTPPSSLEDLSAGRHHPKRASL-----------PTRKRRSARHAAT 393

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  683 SRGTSPGKRRTPPSSASPPPRHRRNSPNPPAAQRGRDTRSSPPAHTTRVSSSPPGRYGASGSSPQRQRRQTSPSHSTRPI 762
Cdd:PHA03247   394 PFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKA 473

                          250
                   ....*....|..
gi 1446500442  763 ---RRVSRTPEP 771
Cdd:PHA03247   474 ldaLRERRPPEP 485
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 537-662 1.14e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 537 FTPPIQRRYSPPSPSPAQKRRSSGSPPKRRRSPSPMPKrriPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRT 616
Cdd:PRK14951  364 FKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAP---APAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA 440

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1446500442 617 SPSPVAKHRRSPSPMSKRrtcASPVSKRRNSPSPAPQRRSSPSPMP 662
Cdd:PRK14951  441 APAAVALAPAPPAQAAPE---TVAIPVRVAPEPAVASAAPAPAAAP 483
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 538-630 2.20e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 41.72  E-value: 2.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 538 TPPIQRRYSPPSPSPAQKRRSSGSPPkrrrspsPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRTS 617
Cdd:PRK14950  364 PAPQPAKPTAAAPSPVRPTPAPSTRP-------KAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAI 436

                          90
                  ....*....|...
gi 1446500442 618 PSPVAKHRRSPSP 630
Cdd:PRK14950  437 PVDEKPKYTPPAP 449
BimA_second NF040983
trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia ...
 548-619 2.49e-03

trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia intracellular motility A), WP_004266405.1-like proteins in Burkholderia mallei or B. pseudomallei. The term BimA has also been used for WP_011205626.1-like homologs that have a very different N-terminal half.


Pssm-ID: 468913 [Multi-domain]  Cd Length: 382  Bit Score: 41.04  E-value: 2.49e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1446500442 548 PSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRTSPS 619
Cdd:NF040983   90 PPPPPPPPPPPPPPPTPPPPPPPPPPPPPPSPPPPPPPSPPPSPPPPTTTPPTRTTPSTTTPTPSMHPIQPT 161
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 544-660 2.66e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 41.25  E-value: 2.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 544 RYSPPSPSPAQKRRSSGSPPKRRRSP-SPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPmskrrtSPSVSKR-RTSPSPV 621
Cdd:PHA03269   38 QKPDPAPAPHQAASRAPDPAVAPTSAaSRKPDLAQAPTPAASEKFDPAPAPHQAASRAP------DPAVAPQlAAAPKPD 111

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1446500442 622 AKHRRSPSPMSKRRTCASPVSKRRNSPSPAPQRRSSPSP 660
Cdd:PHA03269  112 AAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPP 150
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
493-689 3.53e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 3.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 493 DASPRKRRSPSPPGRRHRSQSPVRRRRSPSPPPRRRSPSPPPRRFTPPIQRRYSPPSPSPA---------QKRRSSGSPP 563
Cdd:PRK12323  371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEalaaarqasARGPGGAPAP 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 564 KRRRSPSPMPKRRiPPSPPPKRRMSPSPPPKRRKSPSPMSkRRTSPSVSKRRTSPSPVAkhrrSPSPMSKRRTCASPVSK 643
Cdd:PRK12323  451 APAPAAAPAAAAR-PAAAGPRPVAAAAAAAPARAAPAAAP-APADDDPPPWEELPPEFA----SPAPAQPDAAPAGWVAE 524

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1446500442 644 RRNSPSPAPQRRSSPSPMPKHRGSPSPVTKRHTSR--SPKRSRGTSPG 689
Cdd:PRK12323  525 SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPvvAPRPPRASASG 572
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 548-705 3.62e-03

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 40.97  E-value: 3.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 548 PSPSPAQKRRSSGSPPKRRRSPSPMPKRR-----IPPSPPPKRRMSPSPPPKRRKSPSPMSKRRtSPSVSKRRTSPSPva 622
Cdd:pfam08580 515 ETPTPALRPPSRPQPPPPGNRPRWNASTNtndldVGHNFKPLTLTTPSPTPSRSSRSSSTLPPV-SPLSRDKSRSPAP-- 591

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 623 kHRRSPSPMSKRRTCASPVskRRNSPSPapqRRSSPSPMPKH-----RGSPSPVTKRHTSRSPKRSRGTSPGKRRTPPSS 697
Cdd:pfam08580 592 -TCRSVSRASRRRASRKPT--RIGSPNS---RTSLLDEPPYPkltlsKGLPRTPRNRQSYAGTSPSRSVSVSSGLGPQTR 665


                  ....*...
gi 1446500442 698 ASPPPRHR 705
Cdd:pfam08580 666 PGTSLGSR 673
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
549-726 5.09e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 5.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 549 SPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRTSPSPVAKHRRSP 628
Cdd:PRK12323  373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAP 452

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 629 SPMS-------------KRRTCASPVSKRRNSPSPAPQRRSSPSP----MPKHRGSPSPVTKRHTSRSPKRSRGTSPGKR 691
Cdd:PRK12323  453 APAAapaaaarpaaagpRPVAAAAAAAPARAAPAAAPAPADDDPPpweeLPPEFASPAPAQPDAAPAGWVAESIPDPATA 532

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1446500442 692 --------RTPPSSASPPPRHRRNSPNPPAAQRGRDTRSSPPA 726
Cdd:PRK12323  533 dpddafetLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
BimA_second NF040983
trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia ...
 562-631 7.24e-03

trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia intracellular motility A), WP_004266405.1-like proteins in Burkholderia mallei or B. pseudomallei. The term BimA has also been used for WP_011205626.1-like homologs that have a very different N-terminal half.


Pssm-ID: 468913 [Multi-domain]  Cd Length: 382  Bit Score: 39.89  E-value: 7.24e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 562 PPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRTSPSPVAKHRRSPSPM 631
Cdd:NF040983   94 PPPPPPPPPPPTPPPPPPPPPPPPPPSPPPPPPPSPPPSPPPPTTTPPTRTTPSTTTPTPSMHPIQPTQL 163
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 569-653 7.54e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.79  E-value: 7.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 569 PSPMPKRRIPPSPPPKR-----RMSPSPPPKRRKSPSPMSKRRTSPSVSKRRTSPSPVAKHRRSPSPMSkrrTCASPVSK 643
Cdd:PRK14950  364 PAPQPAKPTAAAPSPVRptpapSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLT---RAAIPVDE 440

                          90
                  ....*....|
gi 1446500442 644 RRNSPSPAPQ 653
Cdd:PRK14950  441 KPKYTPPAPP 450
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 207-630 7.77e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.15  E-value: 7.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  207 EEPKREPDQSESSKPEPliqeaSSTSDLVTEMKPDSVSEPVKESSPDKTSKSEDRPKPRDREKDGRKDRPRHRSRSRSPR 286
Cdd:PHA03307    74 GPGTEAPANESRSTPTW-----SLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPP 148

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  287 SRRRPRSRSRSFSPRRRTSPRRRISPRRRSPPRRQPPSRHRrsrspvrrrrsrsrsssgssssrsphkragkrGSATPPR 366
Cdd:PHA03307   149 AASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSP--------------------------------PAEPPPS 196

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  367 KLARRTDLSSPPRRRGRSPSGPDTSPSAGKHRPGGRNDSRSPSPKPRRSDASDSEEDKLGKGSTADSVqqrrqyrrqnqq 446
Cdd:PHA03307   197 TPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPIT------------ 264

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  447 sssdtgsssssedeGPRRQNRGAGARNGEIRRRRSHSPASPRRRHRDASPRKRRSPSPPGRRHRSQSPVRRRRSPSPPPR 526
Cdd:PHA03307   265 --------------LPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTS 330

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442  527 RRSPSPPPRRFTPPiqrrySPPSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRrmspSPPPKRRKSPSPMSKRR 606
Cdd:PHA03307   331 SSSESSRGAAVSPG-----PSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGR----PTRRRARAAVAGRARRR 401

                          410       420
                   ....*....|....*....|....*
gi 1446500442  607 TSPSVSKR-RTSPSPVAKHRRSPSP 630
Cdd:PHA03307   402 DATGRFPAgRPRPSPLDAGAASGAF 426
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 538-660 9.32e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.70  E-value: 9.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446500442 538 TPPIQRRYSPPSPSPAQKRRSSGSPPKRRRSPSPMPKRriPPSPPPKRRMSPSPPPKRRKSPSPMSKRRTSPSVSKRRTS 617
Cdd:PRK14951  383 RPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAA--APPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETV 460

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1446500442 618 PSPVakhRRSPSPMSKRRTCASPvskrrNSPSPAPQRRSSPSP 660
Cdd:PRK14951  461 AIPV---RVAPEPAVASAAPAPA-----AAPAAARLTPTEEGD 495
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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