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Conserved domains on  [gi|528473787|ref|XP_005171623|]
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cell division cycle protein 27 homolog isoform X1 [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 575-774 1.85e-33

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 130.23  E-value: 1.85e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 575 WCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQE 654
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 655 KFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEEL 734
Cdd:COG2956   91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 528473787 735 KQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 774
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 17-92 2.14e-22

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


:

Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 91.55  E-value: 2.14e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528473787   17 NHYAYRDAVFLAERLY-AEVHSEEALFLLATCYYRSGKAYKAYHLLKRH--SCTTPQCKYLLAKCCVELSKLAEGEQIL 92
Cdd:pfam12895   1 DQHQYKNAIFLAERLLaAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAklNGSSLGCRYLFAQCLLKLKKYDEALDAL 79
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 455-676 6.51e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.78  E-value: 6.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 455 QAFNLQKAAADGLMTLMRDIGRGYLALCSYNCREAINILSQLpshhyntgwvlgqiGRAHFELAEYMQAERIFSEVRRIE 534
Cdd:COG3914   43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELA--------------ALLLQALGRYEEALALYRRALALN 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 535 SYRVEGMDIYSTTLWHLQKDV-ALSALSKdLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLG 613
Cdd:COG3914  109 PDNAEALFNLGNLLLALGRLEeALAALRR-ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528473787 614 HELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVL 676
Cdd:COG3914  188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSEL 250
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 575-774 1.85e-33

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 130.23  E-value: 1.85e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 575 WCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQE 654
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 655 KFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEEL 734
Cdd:COG2956   91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 528473787 735 KQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 774
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 17-92 2.14e-22

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 91.55  E-value: 2.14e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528473787   17 NHYAYRDAVFLAERLY-AEVHSEEALFLLATCYYRSGKAYKAYHLLKRH--SCTTPQCKYLLAKCCVELSKLAEGEQIL 92
Cdd:pfam12895   1 DQHQYKNAIFLAERLLaAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAklNGSSLGCRYLFAQCLLKLKKYDEALDAL 79
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 585-786 1.49e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 77.82  E-value: 1.49e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  585 QREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGL------------------ 646
Cdd:TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALatilieagefeeaekhad 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  647 ----------------GMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLC 710
Cdd:TIGR02917 252 allkkapnsplahylkALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528473787  711 KFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDK 786
Cdd:TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 455-676 6.51e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.78  E-value: 6.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 455 QAFNLQKAAADGLMTLMRDIGRGYLALCSYNCREAINILSQLpshhyntgwvlgqiGRAHFELAEYMQAERIFSEVRRIE 534
Cdd:COG3914   43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELA--------------ALLLQALGRYEEALALYRRALALN 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 535 SYRVEGMDIYSTTLWHLQKDV-ALSALSKdLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLG 613
Cdd:COG3914  109 PDNAEALFNLGNLLLALGRLEeALAALRR-ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528473787 614 HELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVL 676
Cdd:COG3914  188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSEL 250
TPR_12 pfam13424
Tetratricopeptide repeat;
641-706 1.33e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.61  E-value: 1.33e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528473787  641 NAWYGLGMIYYKQEKFNLAEIHFKKAFSI--------NPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPK 706
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 640-672 7.46e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 7.46e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 528473787   640 YNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 672
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 587-702 3.57e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.47  E-value: 3.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 587 EHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYnawyglgmiyykQEKF-NLAEIH--- 662
Cdd:cd24142   15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG------------YEKYlYLGQLSgge 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 528473787 663 -----FKKAFSInpqssvLLCHIGVVQHALKKSDHALETLNRAIS 702
Cdd:cd24142   83 ealqyYEKGIEI------LEEELQALQAASAEAEEEAEELKRKLS 121
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 575-774 1.85e-33

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 130.23  E-value: 1.85e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 575 WCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQE 654
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 655 KFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEEL 734
Cdd:COG2956   91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 528473787 735 KQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 774
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
566-736 4.45e-33

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 128.20  E-value: 4.45e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 566 DMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYG 645
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 646 LGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYK 725
Cdd:COG0457   82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                        170
                 ....*....|.
gi 528473787 726 AALQELEELKQ 736
Cdd:COG0457  162 EALELLEKLEA 172
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
599-765 5.51e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 125.12  E-value: 5.51e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 599 IQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLC 678
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 679 HIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQT 758
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160


                 ....*..
gi 528473787 759 HLALMNF 765
Cdd:COG0457  161 EEALELL 167
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 552-773 8.34e-31

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 122.53  E-value: 8.34e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 552 QKDVALSALsKDLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRN 631
Cdd:COG2956   23 QPDKAIDLL-EEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 632 AIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCK 711
Cdd:COG2956  102 LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL 181

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528473787 712 FHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDP 773
Cdd:COG2956  182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 488-734 8.98e-26

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 107.89  E-value: 8.98e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 488 EAINILSQLPSHHYNTGWVLGQIGRAHFELAEYMQAERIFSEVRRIESYRVEGM----DIYsttlwHLQKDV--ALSALS 561
Cdd:COG2956   26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALlelaQDY-----LKAGLLdrAEELLE 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 562 KdLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYN 641
Cdd:COG2956  101 K-LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 642 AWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLcKFHRASILFAN 721
Cdd:COG2956  180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERK 258

                        250
                 ....*....|...
gi 528473787 722 EKYKAALQELEEL 734
Cdd:COG2956  259 EGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
566-734 5.75e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 104.70  E-value: 5.75e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 566 DMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYG 645
Cdd:COG0457   36 ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYN 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 646 LGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYK 725
Cdd:COG0457  116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195


                 ....*....
gi 528473787 726 AALQELEEL 734
Cdd:COG0457  196 LLALLLALE 204
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 585-737 6.91e-24

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 107.39  E-value: 6.91e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 585 QREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFK 664
Cdd:COG3914   91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528473787 665 KAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQI 737
Cdd:COG3914  171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAAL 243
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
633-794 9.51e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.24  E-value: 9.51e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 633 IRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKF 712
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 713 HRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDD 792
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160


                 ..
gi 528473787 793 DE 794
Cdd:COG0457  161 EE 162
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 605-783 8.80e-23

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 99.03  E-value: 8.80e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 605 FAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQ 684
Cdd:COG2956    7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 685 HALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMN 764
Cdd:COG2956   87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                        170
                 ....*....|....*....
gi 528473787 765 FSWAMDLDPKGANNQIKEA 783
Cdd:COG2956  167 LEKALKLDPDCARALLLLA 185
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 17-92 2.14e-22

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 91.55  E-value: 2.14e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528473787   17 NHYAYRDAVFLAERLY-AEVHSEEALFLLATCYYRSGKAYKAYHLLKRH--SCTTPQCKYLLAKCCVELSKLAEGEQIL 92
Cdd:pfam12895   1 DQHQYKNAIFLAERLLaAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAklNGSSLGCRYLFAQCLLKLKKYDEALDAL 79
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 579-707 2.84e-22

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 93.33  E-value: 2.84e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 579 GNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNL 658
Cdd:COG4783   11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 528473787 659 AEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKN 707
Cdd:COG4783   91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 606-741 6.31e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 89.48  E-value: 6.31e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 606 AYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQH 685
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 528473787 686 ALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKE 741
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 504-762 6.83e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.64  E-value: 6.83e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 504 GWVLgqIGRAHFELAEYMQAERIFSEVRRIESYRVEgmdIYST--TLWHLQKDV--ALSALSKdLTDMDKNSPEPWCVVG 579
Cdd:COG2956   10 GWYF--KGLNYLLNGQPDKAIDLLEEALELDPETVE---AHLAlgNLYRRRGEYdrAIRIHQK-LLERDPDRAEALLELA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 580 NCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLA 659
Cdd:COG2956   84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 660 EIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVP 739
Cdd:COG2956  164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243

                        250       260
                 ....*....|....*....|...
gi 528473787 740 kESLVYFLIGKVYKKLGQTHLAL 762
Cdd:COG2956  244 -SDDLLLALADLLERKEGLEAAL 265
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 642-774 3.00e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 87.55  E-value: 3.00e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 642 AWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFAN 721
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 528473787 722 EKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 774
Cdd:COG4783   86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 624-747 1.85e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 85.06  E-value: 1.85e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 624 KALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISI 703
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 528473787 704 DPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFL 747
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 597-748 9.72e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 87.74  E-value: 9.72e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 597 RAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVL 676
Cdd:COG3914   69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA 148

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528473787 677 LCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLI 748
Cdd:COG3914  149 YLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
502-734 2.61e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.36  E-value: 2.61e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 502 NTGWVLGQIGRAHFELAEYMQAERIFSEVRRIESYRVEGMDIYSTTLWHLQK-DVALSALSKDLtDMDKNSPEPWCVVGN 580
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQAL-ELDPDDAEALNNLGL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 581 CFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAE 660
Cdd:COG0457   85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528473787 661 IHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEEL 734
Cdd:COG0457  165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
579-729 3.93e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 81.11  E-value: 3.93e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 579 GNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNL 658
Cdd:COG4785   80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528473787 659 AEIHFKKAFSINPQS--SVLLCHIgvvQHALKKSDHALETLNRAIsidPKNPLCKFHRASilfANEKYKAALQ 729
Cdd:COG4785  160 AIADLEKALELDPNDpeRALWLYL---AERKLDPEKALALLLEDW---ATAYLLQGDTEE---ARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 559-673 4.45e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 78.70  E-value: 4.45e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 559 ALSKDLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKR 638
Cdd:COG4783   25 ALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE 104

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 528473787 639 HYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQS 673
Cdd:COG4783  105 HPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 570-674 7.03e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 77.74  E-value: 7.03e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 570 NSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMI 649
Cdd:COG4235   15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                         90       100
                 ....*....|....*....|....*
gi 528473787 650 YYKQEKFNLAEIHFKKAFSINPQSS 674
Cdd:COG4235   95 AFQQGDYAEAIAAWQKLLALLPADA 119
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 591-717 1.23e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 76.97  E-value: 1.23e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 591 AIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSIN 670
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 528473787 671 PQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASI 717
Cdd:COG4235   82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 480-680 5.77e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 82.35  E-value: 5.77e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 480 ALCSYNCREAINILSQLPSHHYNTGWVLGQIGRAHFELAEYMQAERIFSEVRRIESYRVEGMDIYSTTLWHLQK----DV 555
Cdd:COG3914   17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAlgryEE 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 556 ALSALSKDLtDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRL 635
Cdd:COG3914   97 ALALYRRAL-ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL 175

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 528473787 636 NKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHI 680
Cdd:COG3914  176 DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 597-774 1.84e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 80.42  E-value: 1.84e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 597 RAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRH---------YNAWYGLGMIYYKQEKFNLAEIHFKKAF 667
Cdd:COG3914   26 LALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAaaaaallllAALLELAALLLQALGRYEEALALYRRAL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 668 SINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFL 747
Cdd:COG3914  106 ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNN 185

                        170       180
                 ....*....|....*....|....*..
gi 528473787 748 IGKVYKKLGQTHLALMNFSWAMDLDPK 774
Cdd:COG3914  186 LGNALQDLGRLEEAIAAYRRALELDPD 212
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
581-671 7.83e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 70.58  E-value: 7.83e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 581 CFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGcFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAE 660
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|.
gi 528473787 661 IHFKKAFSINP 671
Cdd:COG3063   80 AYLERALELDP 90
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
590-785 1.31e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 73.80  E-value: 1.31e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 590 IAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFR------NAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHF 663
Cdd:COG4785   17 AAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAAlaaeriDRALALPDLAQLYYERGVAYDSLGDYDLAIADF 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 664 KKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESL 743
Cdd:COG4785   97 DQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPE 176

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 528473787 744 VYFLIGKVYKKLG-QTHLALMNFSWAMDL----DPKGANNQIKEAID 785
Cdd:COG4785  177 RALWLYLAERKLDpEKALALLLEDWATAYllqgDTEEARELFKLALA 223
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 580-671 1.37e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 71.92  E-value: 1.37e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 580 NCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLA 659
Cdd:COG5010   62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141

                         90
                 ....*....|..
gi 528473787 660 EIHFKKAFSINP 671
Cdd:COG5010  142 KAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 585-786 1.49e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 77.82  E-value: 1.49e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  585 QREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGL------------------ 646
Cdd:TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALatilieagefeeaekhad 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  647 ----------------GMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLC 710
Cdd:TIGR02917 252 allkkapnsplahylkALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528473787  711 KFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDK 786
Cdd:TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 597-705 2.04e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 71.53  E-value: 2.04e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 597 RAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVL 676
Cdd:COG5010   45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124

                         90       100
                 ....*....|....*....|....*....
gi 528473787 677 LCHIGVVQHALKKSDHALETLNRAISIDP 705
Cdd:COG5010  125 YSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 591-777 4.12e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 76.66  E-value: 4.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  591 AIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSIN 670
Cdd:TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  671 PQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGK 750
Cdd:TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGD 711

                         170       180
                  ....*....|....*....|....*..
gi 528473787  751 VYKKLGQTHLALMNFSWAMDLDPKGAN 777
Cdd:TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQN 738
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 597-739 9.44e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.60  E-value: 9.44e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 597 RAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVL 676
Cdd:COG5010   11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528473787 677 LCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVP 739
Cdd:COG5010   91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
649-740 1.73e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 66.73  E-value: 1.73e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 649 IYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALEtLNRAISIDPKNPLCKFHRASILFANEKYKAAL 728
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|..
gi 528473787 729 QELEELKQIVPK 740
Cdd:COG3063   80 AYLERALELDPS 91
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 455-676 6.51e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.78  E-value: 6.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 455 QAFNLQKAAADGLMTLMRDIGRGYLALCSYNCREAINILSQLpshhyntgwvlgqiGRAHFELAEYMQAERIFSEVRRIE 534
Cdd:COG3914   43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELA--------------ALLLQALGRYEEALALYRRALALN 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 535 SYRVEGMDIYSTTLWHLQKDV-ALSALSKdLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLG 613
Cdd:COG3914  109 PDNAEALFNLGNLLLALGRLEeALAALRR-ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528473787 614 HELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVL 676
Cdd:COG3914  188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSEL 250
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 682-773 1.82e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.97  E-value: 1.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 682 VVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLA 761
Cdd:COG5010   62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141

                         90
                 ....*....|..
gi 528473787 762 LMNFSWAMDLDP 773
Cdd:COG5010  142 KAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 509-636 3.36e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.05  E-value: 3.36e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 509 QIGRAHFELAEYMQAERIFSEVRRIESYRVEGMDIYSTTLWHLQK-DVALSALsKDLTDMDKNSPEPWCVVGNCFSLQRE 587
Cdd:COG4783    9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDlDEAIVLL-HEALELDPDEPEARLNLGLALLKAGD 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 528473787 588 HDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLN 636
Cdd:COG4783   88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
683-774 6.16e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 56.72  E-value: 6.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 683 VQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQeLEELKQIVPKESLVYFLIGKVYKKLGQTHLAL 762
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|..
gi 528473787 763 MNFSWAMDLDPK 774
Cdd:COG3063   80 AYLERALELDPS 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 489-774 1.57e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.64  E-value: 1.57e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  489 AINILSQLPSHhYNTGWVLGQIgraHFELAEYMQAERIFSEVRRIESYRVEGMDIYSTTLWHL-QKDVALSALSkDLTDM 567
Cdd:TIGR02917 284 LQDALKSAPEY-LPALLLAGAS---EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLgRVDEAIATLS-PALGL 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  568 DKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLG 647
Cdd:TIGR02917 359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  648 MIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAA 727
Cdd:TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 528473787  728 LQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 774
Cdd:TIGR02917 519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 606-794 7.77e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.24  E-value: 7.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 606 AYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVV-- 683
Cdd:COG3914    1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAal 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 684 -------QHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLG 756
Cdd:COG3914   81 lelaallLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 528473787 757 QTHLALMNFSWAMDLDPKGAN------------NQIKEAID--KRYL---PDDDE 794
Cdd:COG3914  161 RLEEAIAALRRALELDPDNAEalnnlgnalqdlGRLEEAIAayRRALeldPDNAD 215
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 591-794 1.11e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 58.94  E-value: 1.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  591 AIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFN--LAEIHFKKAFS 668
Cdd:TIGR02917  41 AIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQqvLDELPGKTLLD 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  669 iNPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLI 748
Cdd:TIGR02917 121 -DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 528473787  749 GKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDDDE 794
Cdd:TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 623-708 7.54e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.53  E-value: 7.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 623 EKALGCFRNAIRLNKRHY---NAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVL---LCHIGVVQHALKKSDHALET 696
Cdd:COG1729   10 DEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKARAT 89

                         90
                 ....*....|..
gi 528473787 697 LNRAISIDPKNP 708
Cdd:COG1729   90 LEELIKKYPDSE 101
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 551-744 3.04e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 54.32  E-value: 3.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  551 LQKDVALS-ALSKDLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCF 629
Cdd:TIGR02917 579 GKGQLKKAlAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  630 RNAIRLNKRHYNAWYGL----------------------------------GMIYYKQEKFNLAEIHFKKAFSINPqSSV 675
Cdd:TIGR02917 659 KRALELKPDNTEAQIGLaqlllaakrtesakkiakslqkqhpkaalgfeleGDLYLRQKDYPAAIQAYRKALKRAP-SSQ 737

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528473787  676 LLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLV 744
Cdd:TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 556-637 6.65e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.96  E-value: 6.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 556 ALSALSKDLtDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRL 635
Cdd:COG5010   73 SLALLEQAL-QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151


                 ..
gi 528473787 636 NK 637
Cdd:COG5010  152 SP 153
TPR_12 pfam13424
Tetratricopeptide repeat;
641-706 1.33e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.61  E-value: 1.33e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528473787  641 NAWYGLGMIYYKQEKFNLAEIHFKKAFSI--------NPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPK 706
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_1 pfam00515
Tetratricopeptide repeat;
640-672 1.68e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.10  E-value: 1.68e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 528473787  640 YNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 672
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
554-640 2.78e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 2.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 554 DVALSALSKdLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFfTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAI 633
Cdd:COG3063    9 EEAEEYYEK-ALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86


                 ....*..
gi 528473787 634 RLNKRHY 640
Cdd:COG3063   87 ELDPSAL 93
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 640-672 7.46e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 7.46e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 528473787   640 YNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 672
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 585-674 1.94e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.60  E-value: 1.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 585 QREHDIAIKFFTRAIQVDPSFAY---AYTLLGHELVLTEELEKALGCFRNAIRLNKRHY---NAWYGLGMIYYKQEKFNL 658
Cdd:COG1729    6 AGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDK 85

                         90
                 ....*....|....*.
gi 528473787 659 AEIHFKKAFSINPQSS 674
Cdd:COG1729   86 ARATLEELIKKYPDSE 101
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 587-702 3.57e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.47  E-value: 3.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 587 EHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYnawyglgmiyykQEKF-NLAEIH--- 662
Cdd:cd24142   15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG------------YEKYlYLGQLSgge 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 528473787 663 -----FKKAFSInpqssvLLCHIGVVQHALKKSDHALETLNRAIS 702
Cdd:cd24142   83 ealqyYEKGIEI------LEEELQALQAASAEAEEEAEELKRKLS 121
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 642-672 5.56e-05

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 40.58  E-value: 5.56e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 528473787  642 AWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 672
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 584-770 6.73e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 46.52  E-value: 6.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  584 LQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHF 663
Cdd:TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  664 KKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQ------ELEelKQI 737
Cdd:TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEkfdtaiELE--KET 500

                         170       180       190
                  ....*....|....*....|....*....|...
gi 528473787  738 VPKESLVYFLIGKvykklgqthlALMNFSWAMD 770
Cdd:TIGR00990 501 KPMYMNVLPLINK----------ALALFQWKQD 523
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 648-740 7.84e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.67  E-value: 7.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 648 MIYYKQEKFNLAEIHFKKAFSINPQSSVL---LCHIGVVQHALKKSDHALETLNRAISIDPKNPL---CKFHRASILFAN 721
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80

                         90
                 ....*....|....*....
gi 528473787 722 EKYKAALQELEELKQIVPK 740
Cdd:COG1729   81 GDYDKARATLEELIKKYPD 99
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 556-636 1.12e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.69  E-value: 1.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 556 ALSALSKdLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVLTEELEKALGCFRNAIRL 635
Cdd:COG4235   36 ALAAYEK-ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114


                 .
gi 528473787 636 N 636
Cdd:COG4235  115 L 115
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 560-735 5.52e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 5.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  560 LSKDLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSfAYAYTLLGHELVLTEELEKALGCFRNAIRLNKRH 639
Cdd:TIGR02917 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  640 YNAWYGLGMIYYKQEKFNLAEIHF---------------------------------KKAFSINPQSSVLLCHIGVVQHA 686
Cdd:TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYqtvvkkapdnavvlnnlawlylelkdpraleyaERALKLAPNIPAILDTLGWLLVE 849

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 528473787  687 LKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELK 735
Cdd:TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
TPR_11 pfam13414
TPR repeat;
613-653 6.43e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.84  E-value: 6.43e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 528473787  613 GHELVLTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQ 653
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
TPR_8 pfam13181
Tetratricopeptide repeat;
640-672 6.48e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 37.76  E-value: 6.48e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 528473787  640 YNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 672
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_12 pfam13424
Tetratricopeptide repeat;
606-672 7.04e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.91  E-value: 7.04e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528473787  606 AYAYTLLGHELVLTEELEKALGCFRNAIRLNKR--------HYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 672
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllgpdhplTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_1 pfam00515
Tetratricopeptide repeat;
575-605 8.14e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 8.14e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 528473787  575 WCVVGNCFSLQREHDIAIKFFTRAIQVDPSF 605
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 688-774 1.05e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 1.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 688 KKSDHALETLNRAISIDPKNPL---CKFHRASILFANEKYKAALQELEELKQIVPKESLV---YFLIGKVYKKLGQTHLA 761
Cdd:COG1729    7 GDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKA 86

                         90
                 ....*....|...
gi 528473787 762 LMNFSWAMDLDPK 774
Cdd:COG1729   87 RATLEELIKKYPD 99
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 647-762 1.49e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 41.43  E-value: 1.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787 647 GMIYYKQEKFNLAEIHFKKAFSINPQSsvLLCHIGVVQ--HALKKSDHALETLNRAISIDPKNPL-CKFHRASILFANEK 723
Cdd:COG3071   23 GLLALAEGRYARAEKLLSKAAEHSEAP--LLAYLLAARaaQALGDYERRDEYLAQALELAPEAELaVLLTRAELLLDQGQ 100

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 528473787 724 YKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLAL 762
Cdd:COG3071  101 AEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELL 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 717-777 1.95e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.56  E-value: 1.95e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528473787 717 ILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGAN 777
Cdd:COG5010   63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 611-674 2.45e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.32  E-value: 2.45e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528473787  611 LLGHELVLTEELEKALGCFRNAIRLNKR---HYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSS 674
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 620-774 2.47e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 2.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528473787  620 EELEKALGCFRNAIRLNKRHYNAWYGL---GMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALET 696
Cdd:TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALnlrGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528473787  697 LNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 774
Cdd:TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465
TPR_19 pfam14559
Tetratricopeptide repeat;
693-751 3.39e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.79  E-value: 3.39e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 528473787  693 ALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKV 751
Cdd:pfam14559   7 ALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR_1 pfam00515
Tetratricopeptide repeat;
677-707 4.13e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 4.13e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 528473787  677 LCHIGVVQHALKKSDHALETLNRAISIDPKN 707
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 572-605 6.84e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 6.84e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 528473787   572 PEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSF 605
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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