NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|530392014|ref|XP_005252438|]
View 

armadillo repeat-containing protein 3 isoform X3 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
EDR1 super family cl18686
Ethylene-responsive protein kinase Le-CTR1; EDR1 regulates disease resistance and ...
 653-770 3.73e-18

Ethylene-responsive protein kinase Le-CTR1; EDR1 regulates disease resistance and ethylene-induced senescence, and is also involved in stress response signalling and cell death regulation.


The actual alignment was detected with superfamily member pfam14381:

Pssm-ID: 433922  Cd Length: 198  Bit Score: 83.37  E-value: 3.73e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  653 KEQIEDLAKYVAEKMGGKIPKEKLPDFSWELHISELKFQLKSNVIPIGHVKKGIFYHRALLFKALADRIGIGCSLVRGEY 732
Cdd:pfam14381  88 SLLVKKLAGLVADHMGGPVSDDDDLLERWRESSGELKDSLGSVVLPLGSLKIGLCRHRALLFKVLADSVGLPCRLVKGCY 167

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 530392014  733 -----GRAWNEVMLQNDSRkgvigglpapemYVIDLMFHPGGL 770
Cdd:pfam14381 168 ycgsdDAASNLVKLGDGRE------------YLVDLMGAPGTL 198
PLN03200 super family cl33659
cellulose synthase-interactive protein; Provisional
 115-454 8.61e-11

cellulose synthase-interactive protein; Provisional


The actual alignment was detected with superfamily member PLN03200:

Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 65.89  E-value: 8.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  115 EYPViQLLALKTlgviANDKESRTMLRDNQGLDHLIKILET-----KElndlhiEALAVIAN-CLEDMDTMVQIQQTGGL 188
Cdd:PLN03200  464 EYAV-ALLAILT----DEVDESKWAITAAGGIPPLVQLLETgsqkaKE------DSATVLWNlCCHSEDIRACVESAGAV 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  189 KKLLSFAENSTiPDIQKNAAKAITKAAYDPENRKLfhEQevekcLVALLGSENDGTKIAASQAISAMCENSGSKDFFN-- 266
Cdd:PLN03200  533 PALLWLLKNGG-PKGQEIAAKTLTKLVRTADAATI--SQ-----LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVReg 604

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  267 ---NQGIPQLIQLLKSDNEEVREAAALALANLTTCNPANANAAAEADGIDPLINLLSSKRDGAIANAATVLTnmAMQEPL 343
Cdd:PLN03200  605 saaNDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA--ALSRSI 682

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  344 RLNIQNHDIMHAIISPL-RSANTVVQSKAALAVTATA---CDVEARTELRNSGGLEPLVELLRSKNDEVRKHASWAVMVC 419
Cdd:PLN03200  683 KENRKVSYAAEDAIKPLiKLAKSSSIEVAEQAVCALAnllSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQL 762

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 530392014  420 -----AGDELTANELCRLGALDILEEVNVSGTRKNKFSEA 454
Cdd:PLN03200  763 lkhfpVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEA 802
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 55-90 9.51e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


:

Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.13  E-value: 9.51e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 530392014   55 KVQIFEHGGLEPLIRLLSSPDPDVKKNSMECIYNLV 90
Cdd:pfam00514   5 KQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
 
Name Accession Description Interval E-value
EDR1 pfam14381
Ethylene-responsive protein kinase Le-CTR1; EDR1 regulates disease resistance and ...
 653-770 3.73e-18

Ethylene-responsive protein kinase Le-CTR1; EDR1 regulates disease resistance and ethylene-induced senescence, and is also involved in stress response signalling and cell death regulation.


Pssm-ID: 433922  Cd Length: 198  Bit Score: 83.37  E-value: 3.73e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  653 KEQIEDLAKYVAEKMGGKIPKEKLPDFSWELHISELKFQLKSNVIPIGHVKKGIFYHRALLFKALADRIGIGCSLVRGEY 732
Cdd:pfam14381  88 SLLVKKLAGLVADHMGGPVSDDDDLLERWRESSGELKDSLGSVVLPLGSLKIGLCRHRALLFKVLADSVGLPCRLVKGCY 167

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 530392014  733 -----GRAWNEVMLQNDSRkgvigglpapemYVIDLMFHPGGL 770
Cdd:pfam14381 168 ycgsdDAASNLVKLGDGRE------------YLVDLMGAPGTL 198
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 115-454 8.61e-11

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 65.89  E-value: 8.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  115 EYPViQLLALKTlgviANDKESRTMLRDNQGLDHLIKILET-----KElndlhiEALAVIAN-CLEDMDTMVQIQQTGGL 188
Cdd:PLN03200  464 EYAV-ALLAILT----DEVDESKWAITAAGGIPPLVQLLETgsqkaKE------DSATVLWNlCCHSEDIRACVESAGAV 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  189 KKLLSFAENSTiPDIQKNAAKAITKAAYDPENRKLfhEQevekcLVALLGSENDGTKIAASQAISAMCENSGSKDFFN-- 266
Cdd:PLN03200  533 PALLWLLKNGG-PKGQEIAAKTLTKLVRTADAATI--SQ-----LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVReg 604

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  267 ---NQGIPQLIQLLKSDNEEVREAAALALANLTTCNPANANAAAEADGIDPLINLLSSKRDGAIANAATVLTnmAMQEPL 343
Cdd:PLN03200  605 saaNDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA--ALSRSI 682

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  344 RLNIQNHDIMHAIISPL-RSANTVVQSKAALAVTATA---CDVEARTELRNSGGLEPLVELLRSKNDEVRKHASWAVMVC 419
Cdd:PLN03200  683 KENRKVSYAAEDAIKPLiKLAKSSSIEVAEQAVCALAnllSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQL 762

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 530392014  420 -----AGDELTANELCRLGALDILEEVNVSGTRKNKFSEA 454
Cdd:PLN03200  763 lkhfpVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEA 802
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 381-416 7.31e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 43.19  E-value: 7.31e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 530392014   381 DVEARTELRNSGGLEPLVELLRSKNDEVRKHASWAV 416
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWAL 36
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 381-416 6.05e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.90  E-value: 6.05e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 530392014  381 DVEARTELRNSGGLEPLVELLRSKNDEVRKHASWAV 416
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWAL 36
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 55-90 9.51e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.13  E-value: 9.51e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 530392014   55 KVQIFEHGGLEPLIRLLSSPDPDVKKNSMECIYNLV 90
Cdd:pfam00514   5 KQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
HEAT COG1413
HEAT repeat [General function prediction only];
270-415 1.42e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 42.69  E-value: 1.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014 270 IPQLIQLLKSDNEEVREAAALALANLttcnpananaaAEADGIDPLINLLSSKRDGAIANAATVLTNMAMQEPLRlniqn 349
Cdd:COG1413   18 VPALIAALADEDPDVRAAAARALGRL-----------GDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAVP----- 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530392014 350 hdimhAIISPLRSANTVVQSKAALAVtatacdvearTELRNSGGLEPLVELLRSKNDEVRKHASWA 415
Cdd:COG1413   82 -----ALIAALKDEDPEVRRAAAEAL----------GRLGDPAAVPALLEALKDPDWEVRRAAARA 132
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 57-91 3.48e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 35.87  E-value: 3.48e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 530392014    57 QIFEHGGLEPLIRLLSSPDPDVKKNSMECIYNLVQ 91
Cdd:smart00185   7 AVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
 
Name Accession Description Interval E-value
EDR1 pfam14381
Ethylene-responsive protein kinase Le-CTR1; EDR1 regulates disease resistance and ...
 653-770 3.73e-18

Ethylene-responsive protein kinase Le-CTR1; EDR1 regulates disease resistance and ethylene-induced senescence, and is also involved in stress response signalling and cell death regulation.


Pssm-ID: 433922  Cd Length: 198  Bit Score: 83.37  E-value: 3.73e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  653 KEQIEDLAKYVAEKMGGKIPKEKLPDFSWELHISELKFQLKSNVIPIGHVKKGIFYHRALLFKALADRIGIGCSLVRGEY 732
Cdd:pfam14381  88 SLLVKKLAGLVADHMGGPVSDDDDLLERWRESSGELKDSLGSVVLPLGSLKIGLCRHRALLFKVLADSVGLPCRLVKGCY 167

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 530392014  733 -----GRAWNEVMLQNDSRkgvigglpapemYVIDLMFHPGGL 770
Cdd:pfam14381 168 ycgsdDAASNLVKLGDGRE------------YLVDLMGAPGTL 198
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 115-454 8.61e-11

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 65.89  E-value: 8.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  115 EYPViQLLALKTlgviANDKESRTMLRDNQGLDHLIKILET-----KElndlhiEALAVIAN-CLEDMDTMVQIQQTGGL 188
Cdd:PLN03200  464 EYAV-ALLAILT----DEVDESKWAITAAGGIPPLVQLLETgsqkaKE------DSATVLWNlCCHSEDIRACVESAGAV 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  189 KKLLSFAENSTiPDIQKNAAKAITKAAYDPENRKLfhEQevekcLVALLGSENDGTKIAASQAISAMCENSGSKDFFN-- 266
Cdd:PLN03200  533 PALLWLLKNGG-PKGQEIAAKTLTKLVRTADAATI--SQ-----LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVReg 604

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  267 ---NQGIPQLIQLLKSDNEEVREAAALALANLTTCNPANANAAAEADGIDPLINLLSSKRDGAIANAATVLTnmAMQEPL 343
Cdd:PLN03200  605 saaNDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA--ALSRSI 682

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  344 RLNIQNHDIMHAIISPL-RSANTVVQSKAALAVTATA---CDVEARTELRNSGGLEPLVELLRSKNDEVRKHASWAVMVC 419
Cdd:PLN03200  683 KENRKVSYAAEDAIKPLiKLAKSSSIEVAEQAVCALAnllSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQL 762

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 530392014  420 -----AGDELTANELCRLGALDILEEVNVSGTRKNKFSEA 454
Cdd:PLN03200  763 lkhfpVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEA 802
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 233-399 2.14e-06

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 51.64  E-value: 2.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  233 LVALLGSENDGTKIAASQAISA-----MCENSGSKDFFNNQGIPQLIQLLKSDNEE---VREAAALALANLTTCNPANAN 304
Cdd:PLN03200  104 LLSLLKSGSAEAQKAAAEAIYAvssggLSDHVGSKIFSTEGVVPSLWDQLQPGNKQdkvVEGLLTGALRNLCGSTDGFWS 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  305 AAAEADGIDPLINLLSSKRDGAIANAATVLTNMAMQ-EPLRLNIQNHDIMHAIISPLRSANTV-VQSKAALAVTA-TACD 381
Cdd:PLN03200  184 ATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAfESSISKVLDAGAVKQLLKLLGQGNEVsVRAEAAGALEAlSSQS 263

                         170
                  ....*....|....*...
gi 530392014  382 VEARTELRNSGGLEPLVE 399
Cdd:PLN03200  264 KEAKQAIADAGGIPALIN 281
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 381-416 7.31e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 43.19  E-value: 7.31e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 530392014   381 DVEARTELRNSGGLEPLVELLRSKNDEVRKHASWAV 416
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWAL 36
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 381-416 6.05e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.90  E-value: 6.05e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 530392014  381 DVEARTELRNSGGLEPLVELLRSKNDEVRKHASWAV 416
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWAL 36
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 55-90 9.51e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.13  E-value: 9.51e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 530392014   55 KVQIFEHGGLEPLIRLLSSPDPDVKKNSMECIYNLV 90
Cdd:pfam00514   5 KQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
HEAT COG1413
HEAT repeat [General function prediction only];
270-415 1.42e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 42.69  E-value: 1.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014 270 IPQLIQLLKSDNEEVREAAALALANLttcnpananaaAEADGIDPLINLLSSKRDGAIANAATVLTNMAMQEPLRlniqn 349
Cdd:COG1413   18 VPALIAALADEDPDVRAAAARALGRL-----------GDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAVP----- 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530392014 350 hdimhAIISPLRSANTVVQSKAALAVtatacdvearTELRNSGGLEPLVELLRSKNDEVRKHASWA 415
Cdd:COG1413   82 -----ALIAALKDEDPEVRRAAAEAL----------GRLGDPAAVPALLEALKDPDWEVRRAAARA 132
HEAT COG1413
HEAT repeat [General function prediction only];
97-255 3.11e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 41.54  E-value: 3.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  97 AKLQELNAIPPILDLLKSEYPVIQLLALKTLGviandkesrtMLRDNQGLDHLIKILETKelnDLHIEALAVIAncledm 176
Cdd:COG1413   10 GRLGDPAAVPALIAALADEDPDVRAAAARALG----------RLGDPRAVPALLEALKDP---DPEVRAAAAEA------ 70

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530392014 177 dtMVQIQQTGGLKKLLSFAENSTiPDIQKNAAKAITKaaydpenrklFHEQEVEKCLVALLGSENDGTKIAASQAISAM 255
Cdd:COG1413   71 --LGRIGDPEAVPALIAALKDED-PEVRRAAAEALGR----------LGDPAAVPALLEALKDPDWEVRRAAARALGRL 136
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 60-442 5.19e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 43.94  E-value: 5.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014   60 EHGGLEPLIRLLSSPDPDVKKNSMECIYNLVQDFQ-CRAKLQELNAIPPILDLLKSEYPVI----QLLALKTLgvIANDK 134
Cdd:PLN03200  187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFEsSISKVLDAGAVKQLLKLLGQGNEVSvraeAAGALEAL--SSQSK 264

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  135 ESRTMLRDNQGLDHLIK--ILETKE-LNDLHIEALAVIANCledmdTMVQIqqTGGLKKL-LSFAENSTIPDIQKNAAKA 210
Cdd:PLN03200  265 EAKQAIADAGGIPALINatVAPSKEfMQGEFAQALQENAMG-----ALANI--CGGMSALiLYLGELSESPRSPAPIADT 337

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  211 ITKAAY----------------------------DPENRKLFHEQEVE---------------------KCLVALLGSEN 241
Cdd:PLN03200  338 LGALAYalmvfdssaestrafdptvieqilvkllKPRDTKLVQERIIEalaslygnaylsrklnhaeakKVLVGLITMAT 417

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  242 DGTKIAASQAISAMCENSGS--KDFFNNQGIPQLIQLLKSDNEEVREAAALALANLTTCNPANANAAAEADGIDPLINLL 319
Cdd:PLN03200  418 ADVQEELIRALSSLCCGKGGlwEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL 497

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  320 SSKRDGAIANAATVLTNMAMQ-EPLRLNIQNHDIMHAIISPLRSANTVVQSKAALAVTATACDVEART------------ 386
Cdd:PLN03200  498 ETGSQKAKEDSATVLWNLCCHsEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATisqltalllgdl 577

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  387 ---------------------ELRNSG-----GLEPLVELLRSKNDEVRKHASwavMVCAGDELTANELCrlGALDILEE 440
Cdd:PLN03200  578 peskvhvldvlghvlsvasleDLVREGsaandALRTLIQLLSSSKEETQEKAA---SVLADIFSSRQDLC--ESLATDEI 652


                  ..
gi 530392014  441 VN 442
Cdd:PLN03200  653 IN 654
HEAT COG1413
HEAT repeat [General function prediction only];
64-215 6.87e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 40.38  E-value: 6.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  64 LEPLIRLLSSPDPDVKKNSMECIynlvqdfqcrAKLQELNAIPPILDLLKSEYPVIQLLALKTLGviandkesrtMLRDN 143
Cdd:COG1413   18 VPALIAALADEDPDVRAAAARAL----------GRLGDPRAVPALLEALKDPDPEVRAAAAEALG----------RIGDP 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530392014 144 QGLDHLIKILETKELnDLHIEALAVIAncledmdtmvQIQQTGGLKKLLSFAENSTiPDIQKNAAKAITKAA 215
Cdd:COG1413   78 EAVPALIAALKDEDP-EVRRAAAEALG----------RLGDPAAVPALLEALKDPD-WEVRRAAARALGRLG 137
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 67-274 1.09e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 42.78  E-value: 1.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014   67 LIRLLSSPDPDVKKNSMECIYNLVQDFQCRAKLQELNAIPPILDLLKSEYPVIQLLALKTLGVIandkeSRTMLRDNQGl 146
Cdd:PLN03200   63 LVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAV-----SSGGLSDHVG- 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  147 dhlIKILETKelndlhiealAVIANCLEDM------DTMVQIQQTGGLKKLLSFAEN-------------------STIP 201
Cdd:PLN03200  137 ---SKIFSTE----------GVVPSLWDQLqpgnkqDKVVEGLLTGALRNLCGSTDGfwsatleaggvdilvkllsSGNS 203

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530392014  202 DIQKNAAK--AITKAAYDPENRKLFHeQEVEKCLVALLGSEND----GTKIAASQAISAMCENSgSKDFFNNQGIPQLI 274
Cdd:PLN03200  204 DAQANAASllARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEvsvrAEAAGALEALSSQSKEA-KQAIADAGGIPALI 280
COG5096 COG5096
Vesicle coat complex, various subunits [Intracellular trafficking, secretion, and vesicular ...
 3-283 3.25e-03

Vesicle coat complex, various subunits [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 227427 [Multi-domain]  Cd Length: 757  Bit Score: 40.87  E-value: 3.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014   3 FGILASNNDVKKLlrelDVMNSVIAQLAPEEevvihefaslclaNMSaEYTSKVqifehggleplIRLLSSPDPDVKKns 82
Cdd:COG5096   25 SGRLESSNDYKKI----DAMKKIIAQMSLGE-------------DMS-SLFPDV-----------IKNVATRDVELKR-- 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  83 mECIYNLVQDFQCRAKLQELnAIPPILDLLKSEYPVIQLLALKTLgviandkesrTMLRDNQGLDHLIKiletkelndlh 162
Cdd:COG5096   74 -LLYLYLERYAKLKPELALL-AVNTIQKDLQDPNEEIRGFALRTL----------SLLRVKELLGNIID----------- 130

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014 163 iealaVIANCLEDMDTMVqiqqtgglkkllsfaenstipdiQKNAAKAITKaaYDPENRKLFHEQEVEKCLVALLgSEND 242
Cdd:COG5096  131 -----PIKKLLTDPHAYV-----------------------RKTAALAVAK--LYRLDKDLYHELGLIDILKELV-ADSD 179

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 530392014 243 GTKIAASQAISAMCENSGSKDFFNN--QGIPQLIQLLKSDNEE 283
Cdd:COG5096  180 PIVIANALASLAEIDPELAHGYSLEviLRIPQLDLLSLSVSTE 222
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 57-91 3.48e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 35.87  E-value: 3.48e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 530392014    57 QIFEHGGLEPLIRLLSSPDPDVKKNSMECIYNLVQ 91
Cdd:smart00185   7 AVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 64-170 6.82e-03

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 36.55  E-value: 6.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014   64 LEPLI-RLLSSPDPDVKKNSMECIynlvqdfqcrAKLQELNAIPPILDLLKSEYPVIQLLALKTLGviandkesrtMLRD 142
Cdd:pfam13646   1 LPALLqALLRDPDPEVRAAAIRAL----------GRIGDPEAVPALLELLKDEDPAVRRAAAEALG----------KIGD 60

                          90       100
                  ....*....|....*....|....*...
gi 530392014  143 NQGLDHLIKILETKELNDLHIEALAVIA 170
Cdd:pfam13646  61 PEALPALLELLRDDDDDVVRAAAAEALA 88
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 188-288 8.63e-03

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 36.16  E-value: 8.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530392014  188 LKKLLSFAENSTIPDIQKNAAKAITKaaydpenrklFHEQEVEKCLVALLGSENDGTKIAASQAISAMCENsgskdffnn 267
Cdd:pfam13646   1 LPALLQALLRDPDPEVRAAAIRALGR----------IGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDP--------- 61

                          90       100
                  ....*....|....*....|..
gi 530392014  268 QGIPQLIQLLKSDN-EEVREAA 288
Cdd:pfam13646  62 EALPALLELLRDDDdDVVRAAA 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH