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Conserved domains on  [gi|530394924|ref|XP_005252777|]
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tetraspanin-32 isoform X12 [Homo sapiens]

Protein Classification

tetraspanin family protein( domain architecture ID 13626493)

tetraspanin family protein is a transmembrane (TM) glycoprotein with four TM segments that facilitates the interaction of membrane and intracellular signaling molecules (such as integrins, pro-growth factors and their receptors, protein kinase-C) in the formation of membrane signaling microdomains (also referred to as the tetraspanin web)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHEMX_like_LEL cd03153
Tetraspanin, extracellular domain or large extracellular loop (LEL), PHEMX_like family. ...
 148-217 2.46e-38

Tetraspanin, extracellular domain or large extracellular loop (LEL), PHEMX_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Phemx (pan hematopoietic expression) or TSSC6 may play a role in hematopoietic cell function.


:

Pssm-ID: 239406  Cd Length: 87  Bit Score: 129.95  E-value: 2.46e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530394924 148 LHSPTQVEDAMLDTYDLVYEQAMKGTSHVRRQELAAIQDVFLCCGKKSPFSRLGSTEADLCQGEEAAREV 217
Cdd:cd03153    1 LHSPTQVEDAVLDTYDLVYEQALKSISGSVRQELAAIQDTFLCCGKKSPFGLLGSTGATLCQGGEAMREV 70
Tetraspanin pfam00335
Tetraspanin family;
46-192 3.52e-08

Tetraspanin family;


:

Pssm-ID: 459767  Cd Length: 183  Bit Score: 52.32  E-value: 3.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530394924   46 KCQMLVTCFFILLLGLSVATmvtltyFGAHfavirrasLEKNPYQAVHQWAFSAGLSLVGLLTLGAVLSAA------ATV 119
Cdd:pfam00335   2 KYLLFLFNLLFWLLGLLLLG------VGVW--------LLSAFSLLLLGLSEASAYIPILLIVLGAVIFLVgflgccGAL 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530394924  120 REAQGLMAGGFLCFSLAFCAQVQVVFWRLHSPTQ--------VEDAMLDTYDLVYEQAMKGTSHVRRqelaaIQDVFLCC 191
Cdd:pfam00335  68 KENRCLLLTYFVLLLLLFLAELAAGILAFVYRDKlsgllsnwLKKSLEDGYRDWLDLYSCLNSALDS-----LQSEFGCC 142


                  .
gi 530394924  192 G 192
Cdd:pfam00335 143 G 143
 
Name Accession Description Interval E-value
PHEMX_like_LEL cd03153
Tetraspanin, extracellular domain or large extracellular loop (LEL), PHEMX_like family. ...
 148-217 2.46e-38

Tetraspanin, extracellular domain or large extracellular loop (LEL), PHEMX_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Phemx (pan hematopoietic expression) or TSSC6 may play a role in hematopoietic cell function.


Pssm-ID: 239406  Cd Length: 87  Bit Score: 129.95  E-value: 2.46e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530394924 148 LHSPTQVEDAMLDTYDLVYEQAMKGTSHVRRQELAAIQDVFLCCGKKSPFSRLGSTEADLCQGEEAAREV 217
Cdd:cd03153    1 LHSPTQVEDAVLDTYDLVYEQALKSISGSVRQELAAIQDTFLCCGKKSPFGLLGSTGATLCQGGEAMREV 70
Tetraspanin pfam00335
Tetraspanin family;
46-192 3.52e-08

Tetraspanin family;


Pssm-ID: 459767  Cd Length: 183  Bit Score: 52.32  E-value: 3.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530394924   46 KCQMLVTCFFILLLGLSVATmvtltyFGAHfavirrasLEKNPYQAVHQWAFSAGLSLVGLLTLGAVLSAA------ATV 119
Cdd:pfam00335   2 KYLLFLFNLLFWLLGLLLLG------VGVW--------LLSAFSLLLLGLSEASAYIPILLIVLGAVIFLVgflgccGAL 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530394924  120 REAQGLMAGGFLCFSLAFCAQVQVVFWRLHSPTQ--------VEDAMLDTYDLVYEQAMKGTSHVRRqelaaIQDVFLCC 191
Cdd:pfam00335  68 KENRCLLLTYFVLLLLLFLAELAAGILAFVYRDKlsgllsnwLKKSLEDGYRDWLDLYSCLNSALDS-----LQSEFGCC 142


                  .
gi 530394924  192 G 192
Cdd:pfam00335 143 G 143
 
Name Accession Description Interval E-value
PHEMX_like_LEL cd03153
Tetraspanin, extracellular domain or large extracellular loop (LEL), PHEMX_like family. ...
 148-217 2.46e-38

Tetraspanin, extracellular domain or large extracellular loop (LEL), PHEMX_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Phemx (pan hematopoietic expression) or TSSC6 may play a role in hematopoietic cell function.


Pssm-ID: 239406  Cd Length: 87  Bit Score: 129.95  E-value: 2.46e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530394924 148 LHSPTQVEDAMLDTYDLVYEQAMKGTSHVRRQELAAIQDVFLCCGKKSPFSRLGSTEADLCQGEEAAREV 217
Cdd:cd03153    1 LHSPTQVEDAVLDTYDLVYEQALKSISGSVRQELAAIQDTFLCCGKKSPFGLLGSTGATLCQGGEAMREV 70
Tetraspanin pfam00335
Tetraspanin family;
46-192 3.52e-08

Tetraspanin family;


Pssm-ID: 459767  Cd Length: 183  Bit Score: 52.32  E-value: 3.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530394924   46 KCQMLVTCFFILLLGLSVATmvtltyFGAHfavirrasLEKNPYQAVHQWAFSAGLSLVGLLTLGAVLSAA------ATV 119
Cdd:pfam00335   2 KYLLFLFNLLFWLLGLLLLG------VGVW--------LLSAFSLLLLGLSEASAYIPILLIVLGAVIFLVgflgccGAL 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530394924  120 REAQGLMAGGFLCFSLAFCAQVQVVFWRLHSPTQ--------VEDAMLDTYDLVYEQAMKGTSHVRRqelaaIQDVFLCC 191
Cdd:pfam00335  68 KENRCLLLTYFVLLLLLFLAELAAGILAFVYRDKlsgllsnwLKKSLEDGYRDWLDLYSCLNSALDS-----LQSEFGCC 142


                  .
gi 530394924  192 G 192
Cdd:pfam00335 143 G 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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