suppression of tumorigenicity 18 protein isoform X2 [Mus musculus]
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
MYT1 | pfam08474 | Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) ... |
480-713 | 3.27e-94 | ||||
Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) of chordates. MYT1 contains C2HC zinc finger domains (pfam01530) and is expressed in developing neurons of the central nervous system where it is involved in the selection of neuronal precursor cells. : Pssm-ID: 462489 [Multi-domain] Cd Length: 237 Bit Score: 298.98 E-value: 3.27e-94
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
765-793 | 6.09e-17 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. : Pssm-ID: 460240 Cd Length: 29 Bit Score: 74.88 E-value: 6.09e-17
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
721-749 | 3.66e-16 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. : Pssm-ID: 460240 Cd Length: 29 Bit Score: 72.57 E-value: 3.66e-16
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
409-437 | 2.72e-14 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. : Pssm-ID: 460240 Cd Length: 29 Bit Score: 67.17 E-value: 2.72e-14
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
813-841 | 4.06e-14 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. : Pssm-ID: 460240 Cd Length: 29 Bit Score: 66.79 E-value: 4.06e-14
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
365-391 | 3.87e-13 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. : Pssm-ID: 460240 Cd Length: 29 Bit Score: 64.09 E-value: 3.87e-13
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
867-893 | 2.95e-11 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. : Pssm-ID: 460240 Cd Length: 29 Bit Score: 58.70 E-value: 2.95e-11
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EnvC super family | cl34844 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
888-1043 | 3.20e-04 | ||||
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]; The actual alignment was detected with superfamily member COG4942: Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.20e-04
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Name | Accession | Description | Interval | E-value | ||||
MYT1 | pfam08474 | Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) ... |
480-713 | 3.27e-94 | ||||
Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) of chordates. MYT1 contains C2HC zinc finger domains (pfam01530) and is expressed in developing neurons of the central nervous system where it is involved in the selection of neuronal precursor cells. Pssm-ID: 462489 [Multi-domain] Cd Length: 237 Bit Score: 298.98 E-value: 3.27e-94
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
765-793 | 6.09e-17 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 74.88 E-value: 6.09e-17
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
721-749 | 3.66e-16 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 72.57 E-value: 3.66e-16
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
409-437 | 2.72e-14 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 67.17 E-value: 2.72e-14
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
813-841 | 4.06e-14 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 66.79 E-value: 4.06e-14
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
365-391 | 3.87e-13 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 64.09 E-value: 3.87e-13
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
867-893 | 2.95e-11 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 58.70 E-value: 2.95e-11
|
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EnvC | COG4942 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
888-1043 | 3.20e-04 | ||||
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.20e-04
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Atg16_CCD | cd22887 | Coiled-coiled domain of autophagy-related 16 (Atg16) family proteins; The Atg16 family ... |
921-970 | 3.74e-04 | ||||
Coiled-coiled domain of autophagy-related 16 (Atg16) family proteins; The Atg16 family includes Saccharomyces cerevisiae Atg16 (also called cytoplasm to vacuole targeting protein 11, CVT11, or SAP18), human autophagy-related protein 16-1 (also called APG16-like 1, ATG16L1, or APG16L) and autophagy-related protein 16-2 (also called APG16-like 2, ATG16L2, WD repeat-containing protein 80 or WDR80), and similar proteins. Atg16 stabilizes the Atg5-Atg12 conjugate and mediates the formation of the 350 kDa complex, which is necessary for autophagy. The Atg5-Atg12/Atg16 complex is required for efficient promotion of Atg8-conjugation to phosphatidylethanolamine and Atg8 localization to the pre-autophagosomal structure (PAS). Similarly, human ATG16L1 plays an essential role in autophagy and acts as a molecular scaffold which mediates protein-protein interactions essential for autophagosome formation. ATG16L2, though structurally similar to ATG16L1 and able to form a complex with the autophagy proteins Atg5 and Atg12, is not essential for autophagy. Single-nucleotide polymorphisms in ATG16L1 is associated with an increased risk of developing Crohn disease. Saccharomyces cerevisiae Atg16 contains an N-terminal domain (NTD) that interacts with the Atg5-Atg12 protein conjugate and a coiled-coil domain (CCD) that dimerizes and mediates self-assembly. Human ATG16L1 and ATG16L2 also contains an N-terminal region that binds Atg5, a CCD homologous to the yeast CCD, and a WD40 domain that represents approximately 50% of the full-length protein. This model corresponds to the CCD of Atg16 family proteins. Pssm-ID: 439196 [Multi-domain] Cd Length: 91 Bit Score: 40.63 E-value: 3.74e-04
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PRK13676 | PRK13676 | YlbF/YmcA family competence regulator; |
921-1004 | 5.67e-04 | ||||
YlbF/YmcA family competence regulator; Pssm-ID: 237467 [Multi-domain] Cd Length: 114 Bit Score: 40.69 E-value: 5.67e-04
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Name | Accession | Description | Interval | E-value | ||||
MYT1 | pfam08474 | Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) ... |
480-713 | 3.27e-94 | ||||
Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) of chordates. MYT1 contains C2HC zinc finger domains (pfam01530) and is expressed in developing neurons of the central nervous system where it is involved in the selection of neuronal precursor cells. Pssm-ID: 462489 [Multi-domain] Cd Length: 237 Bit Score: 298.98 E-value: 3.27e-94
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
765-793 | 6.09e-17 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 74.88 E-value: 6.09e-17
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
721-749 | 3.66e-16 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 72.57 E-value: 3.66e-16
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
409-437 | 2.72e-14 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 67.17 E-value: 2.72e-14
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
813-841 | 4.06e-14 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 66.79 E-value: 4.06e-14
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
365-391 | 3.87e-13 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 64.09 E-value: 3.87e-13
|
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zf-C2HC | pfam01530 | Zinc finger, C2HC type; This is a DNA binding zinc finger domain. |
867-893 | 2.95e-11 | ||||
Zinc finger, C2HC type; This is a DNA binding zinc finger domain. Pssm-ID: 460240 Cd Length: 29 Bit Score: 58.70 E-value: 2.95e-11
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EnvC | COG4942 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
888-1043 | 3.20e-04 | ||||
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.20e-04
|
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Atg16_CCD | cd22887 | Coiled-coiled domain of autophagy-related 16 (Atg16) family proteins; The Atg16 family ... |
921-970 | 3.74e-04 | ||||
Coiled-coiled domain of autophagy-related 16 (Atg16) family proteins; The Atg16 family includes Saccharomyces cerevisiae Atg16 (also called cytoplasm to vacuole targeting protein 11, CVT11, or SAP18), human autophagy-related protein 16-1 (also called APG16-like 1, ATG16L1, or APG16L) and autophagy-related protein 16-2 (also called APG16-like 2, ATG16L2, WD repeat-containing protein 80 or WDR80), and similar proteins. Atg16 stabilizes the Atg5-Atg12 conjugate and mediates the formation of the 350 kDa complex, which is necessary for autophagy. The Atg5-Atg12/Atg16 complex is required for efficient promotion of Atg8-conjugation to phosphatidylethanolamine and Atg8 localization to the pre-autophagosomal structure (PAS). Similarly, human ATG16L1 plays an essential role in autophagy and acts as a molecular scaffold which mediates protein-protein interactions essential for autophagosome formation. ATG16L2, though structurally similar to ATG16L1 and able to form a complex with the autophagy proteins Atg5 and Atg12, is not essential for autophagy. Single-nucleotide polymorphisms in ATG16L1 is associated with an increased risk of developing Crohn disease. Saccharomyces cerevisiae Atg16 contains an N-terminal domain (NTD) that interacts with the Atg5-Atg12 protein conjugate and a coiled-coil domain (CCD) that dimerizes and mediates self-assembly. Human ATG16L1 and ATG16L2 also contains an N-terminal region that binds Atg5, a CCD homologous to the yeast CCD, and a WD40 domain that represents approximately 50% of the full-length protein. This model corresponds to the CCD of Atg16 family proteins. Pssm-ID: 439196 [Multi-domain] Cd Length: 91 Bit Score: 40.63 E-value: 3.74e-04
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PRK13676 | PRK13676 | YlbF/YmcA family competence regulator; |
921-1004 | 5.67e-04 | ||||
YlbF/YmcA family competence regulator; Pssm-ID: 237467 [Multi-domain] Cd Length: 114 Bit Score: 40.69 E-value: 5.67e-04
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COG4372 | COG4372 | Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
893-998 | 2.66e-03 | ||||
Uncharacterized protein, contains DUF3084 domain [Function unknown]; Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 2.66e-03
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Blast search parameters | ||||
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