|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
854-1663 |
2.20e-26 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 118.24 E-value: 2.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 854 ELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKR 933
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 934 AQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEinkvvaakdadfqcLNEKKEKLTEELQSLQRDIKAAQhsedh 1013
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAE--------------LEEKLEELKEELESLEAELEELE----- 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1014 hlQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALT-LGETEVAEKCSHI 1092
Cdd:TIGR02168 365 --AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkLEEAELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1093 REVKSLLEELSFQKGELNvhisekkTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQK 1172
Cdd:TIGR02168 443 EELEEELEELQEELERLE-------EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQ 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1173 VV----------------ELEKAqVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLS 1236
Cdd:TIGR02168 516 SGlsgilgvlselisvdeGYEAA-IEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREIL 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1237 KEKEDLQGQCESWEKKSSHAQRVLA--------------ATEESNKMEQSNL-------------------GKLELSVRK 1283
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnALELAKKLRPGYRivtldgdlvrpggvitggsAKTNSSILE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1284 LRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDlakqdlihttkcqnellneqtQLQEDISKWMA 1363
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE---------------------ELSRQISALRK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1364 RLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKfeagKVTLEQQQRQLEKELTDQKSRLKQLL 1443
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE----IEELEAQIEQLKEELKALREALDELR 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1444 TDVSAAEGRLGTLQEeerRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEaddmRADFSLLRNQFLTERKKAEKQV 1523
Cdd:TIGR02168 810 AELTLLNEEAANLRE---RLESLERRIAATERRLEDLEEQIEELSEDIESLAAE----IEELEELIEELESELEALLNER 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1524 AGLKEALKIQRSQLEKnlleqkqenscMQKEMATIELVAQDNHERARRLMKELSQMQQEYLELKKQVANQKD--LERRQM 1601
Cdd:TIGR02168 883 ASLEEALALLRSELEE-----------LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQErlSEEYSL 951
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 1602 EVSDAMRTLKSEVKD--EIRTSLRNLNQFLPEL-PADLASIlernenlRELESLKENFPFTTKER 1663
Cdd:TIGR02168 952 TLEEAEALENKIEDDeeEARRRLKRLENKIKELgPVNLAAI-------EEYEELKERYDFLTAQK 1009
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
777-1482 |
9.79e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 99.75 E-value: 9.79e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 777 RLEDIMQHLKSKQREERRQ--KA------STQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFIDGHV 848
Cdd:TIGR02168 190 RLEDILNELERQLKSLERQaeKAerykelKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 849 ENLMTEL-----EIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQT 923
Cdd:TIGR02168 270 EELRLEVseleeEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 924 ESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRD 1003
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1004 IKAAQHSEDHhlQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGET 1083
Cdd:TIGR02168 430 LEEAELKELQ--AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1084 EVAEKCSHIR---EVKSLLEELSFQKG-----------ELNVHISEKKTQLALIQQEMEKEEKNLQVVLqQLSRHKTELK 1149
Cdd:TIGR02168 508 VKALLKNQSGlsgILGVLSELISVDEGyeaaieaalggRLQAVVVENLNAAKKAIAFLKQNELGRVTFL-PLDSIKGTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1150 NVADILQLETSE-LQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQR-------------------- 1208
Cdd:TIGR02168 587 QGNDREILKNIEgFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsa 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1209 ----QLLERdRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKL 1284
Cdd:TIGR02168 667 ktnsSILER-RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1285 RQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMAR 1364
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1365 LESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEA---GKVTLEQQQRQLEKELTDQKSRLKQ 1441
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnERASLEEALALLRSELEELSEELRE 905
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 568913760 1442 LLTDVSAAEGRLGTLQEE----ERRIEGLERMLSQAKQQLSEREQ 1482
Cdd:TIGR02168 906 LESKRSELRRELEELREKlaqlELRLEGLEVRIDNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
855-1395 |
4.43e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 94.23 E-value: 4.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 855 LEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRA 934
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 935 QETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHH 1014
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1015 LQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIRE 1094
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1095 VKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEE--KNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQK 1172
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1173 VVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKK 1252
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1253 SSHAQRVLAAT-----EESNKMEQSNLGKlELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQ 1327
Cdd:COG1196 632 LEAALRRAVTLagrlrEVTLEGEGGSAGG-SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 1328 DHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQ 1395
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1201-1538 |
1.33e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.61 E-value: 1.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1201 RRELERQRQLLERDRRETERVRAesqalqscvecLSKEKEDLQGQCESWEKKSSHAQrvlaateesnkmeqsnLGKLELS 1280
Cdd:COG1196 195 LGELERQLEPLERQAEKAERYRE-----------LKEELKELEAELLLLKLRELEAE----------------LEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1281 VRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISK 1360
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1361 WMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLK 1440
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1441 QLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQfLTERKKAE 1520
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA-LAELLEEL 486
|
330
....*....|....*...
gi 568913760 1521 KQVAGLKEALKIQRSQLE 1538
Cdd:COG1196 487 AEAAARLLLLLEAEADYE 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-544 |
8.39e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 8.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 2 KAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQIAANEALKK--DLEGVISGLQEYLGTIKGQ 79
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAElaRLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 80 ATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMR----KELAELESALQEQHEVNASLQQAQGDLSAYETE 155
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELaeaeEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 156 LETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKK 235
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 236 QLKEFQNHLnhvvdglihpEEVAARVDELRKRLKLGAGEmrihsPSDVLGKSLADLQKQFSEILAR-SQWEKEEAQVRER 314
Cdd:COG1196 478 ALAELLEEL----------AEAAARLLLLLEAEADYEGF-----LEGVKAALLLAGLRGLAGAVAVlIGVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 315 KLHEEMALQQEKLANGQEEFRQACERALEARIKF-----DKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEAD 389
Cdd:COG1196 543 ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFlpldkIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 390 EEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLhgtvVRINQERAEELQE 469
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA----ERLAEEELELEEA 698
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 470 AERFSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRLR 544
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
856-1655 |
3.89e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 84.73 E-value: 3.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 856 EIEKSLKHHEDI---VDEIECLEKTLLKRRSELREaDRLLAEAENELACTKEKTKsavekFTDAKRNLLQTESDAEALEK 932
Cdd:TIGR02169 171 KKEKALEELEEVeenIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREYE-----GYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 933 RAQEtalnlvkAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQC-LNEKKEKLTEELQSLQRDIKAAQHSE 1011
Cdd:TIGR02169 245 QLAS-------LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLrVKEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1012 DHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALtlgetevaekcsh 1091
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR------------- 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1092 iREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEkNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQ 1171
Cdd:TIGR02169 385 -DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1172 KVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERV----RAESQALQSCVECLSKEKEDLQGQCE 1247
Cdd:TIGR02169 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVeevlKASIQGVHGTVAQLGSVGERYATAIE 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1248 SweKKSSHAQRVLAATEESNK-----MEQSNLGKLE-LSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINS--- 1318
Cdd:TIGR02169 543 V--AAGNRLNNVVVEDDAVAKeaielLKRRKAGRATfLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKyvf 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1319 ----LQEELDSTQDHLDLAK-------------------QDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETK 1375
Cdd:TIGR02169 621 gdtlVVEDIEAARRLMGKYRmvtlegelfeksgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRI 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1376 EQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGT 1455
Cdd:TIGR02169 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE----LEEDLSSLEQEIENVKSELKELEARIEELEEDLHK 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1456 LQEEerrIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLtERKKAEKQVagLKEALKIQRS 1535
Cdd:TIGR02169 777 LEEA---LNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL-EKEIQELQE--QRIDLKEQIK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1536 QLEKNLLEQKQENSCMQKEMATIELvaqdnheRARRLMKELSQMQQEYLELKKQVanqKDLERRQMEVSDAMRTLKSEVK 1615
Cdd:TIGR02169 851 SIEKEIENLNGKKEELEEELEELEA-------ALRDLESRLGDLKKERDELEAQL---RELERKIEELEAQIEKKRKRLS 920
|
810 820 830 840
....*....|....*....|....*....|....*....|
gi 568913760 1616 dEIRTSLRNLNQFLPELPADLASILERNENLRELESLKEN 1655
Cdd:TIGR02169 921 -ELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAE 959
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1085-1452 |
3.95e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 84.73 E-value: 3.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1085 VAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKnlqvvLQQLSRHKTELKNVADILQLETSELQG 1164
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER-----YQALLKEKREYEGYELLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1165 LKLQHDQKVVELEKAQVDVLEeklelenlqqatQQQRRELERQRQLLERdrrETERVRAESQALQSCVEclsKEKEDLQG 1244
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEI------------SELEKRLEEIEQLLEE---LNKKIKDLGEEEQLRVK---EKIGELEA 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1245 QCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELD 1324
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1325 STQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQ 1404
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568913760 1405 KEREREEQKFEAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGR 1452
Cdd:TIGR02169 462 ADLSKYEQELYD----LKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1-494 |
1.60e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 1.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1 MKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLtdgqiaanEALKKDLEGVISGLQEYLGTIKGQA 80
Cdd:COG1196 286 AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL--------EELEEELEELEEELEEAEEELEEAE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 81 TQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQL 160
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 161 K-LKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKE 239
Cdd:COG1196 438 EeEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 240 FQNHLNHVVDGLIHPEEVAARVDELRkrlkLGAGEMRIHSPSDVLGKSLADLQKQ-------FSEILARSQWEKEEAQVR 312
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAA----LAAALQNIVVEDDEVAAAAIEYLKAakagratFLPLDKIRARAALAAALA 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 313 ERKLHEEMALQQEKLANGQEEFRQACERALEA-RIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEE 391
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVLGDTLLGRtLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 392 KERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEAE 471
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
490 500
....*....|....*....|....*.
gi 568913760 472 RFSREAM---QAAKDLSRAEAEIELL 494
Cdd:COG1196 754 EELPEPPdleELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1156-1734 |
1.62e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 1.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1156 QLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQScvecl 1235
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA----- 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1236 skEKEDLQGQCESWEKKSSHAQRVLAATEESnkmeqsnLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEA 1315
Cdd:COG1196 296 --ELARLEQDIARLEERRRELEERLEELEEE-------LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1316 INSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESklrldq 1395
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE------ 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1396 qemmfQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQ 1475
Cdd:COG1196 441 -----EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1476 QLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALKIQRSQLEKNLLEQKQENScmQKEM 1555
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA--AALA 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1556 ATIELVAQDNHERARRLMKELSQMQQEYLELKKQVANQKDLERRQMEVSDAMRTLKSEVKDEIRTSLRNLNQFLPELPAD 1635
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1636 LASILERNENLRELESLKENFPFTTKERIFEE--KSNFPQVHIMDEHWRGEALRQRLRRHEDQLKAQLRHCMSKQAEVLI 1713
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEerELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
570 580
....*....|....*....|....*..
gi 568913760 1714 KGK------QQTEGTLHSLRRQVDALG 1734
Cdd:COG1196 754 EELpeppdlEELERELERLEREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
769-1325 |
2.47e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 2.47e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 769 HNLENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDfidgHV 848
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA----RL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 849 ENLMTELEIEKslkhhEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAE 928
Cdd:COG1196 308 EERRRELEERL-----EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 929 ALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQ 1008
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1009 HSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSEL-GHRREELLLLQDSLAQAKADLQEALTLGETEVAE 1087
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLeGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1088 KCS--HIREVKSLLEELSFQKGELNVHISEKKTQLALIQQ---EMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSEL 1162
Cdd:COG1196 543 ALAaaLQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIrarAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1163 QGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQscvECLSKEKEDL 1242
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA---EEELELEEAL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1243 QGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQlqgkQEAINSLQEE 1322
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL----ERELERLERE 775
|
...
gi 568913760 1323 LDS 1325
Cdd:COG1196 776 IEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
767-1433 |
2.51e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 2.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 767 EHHNLENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDglhrdiddllQEKKELELEVEELHRTIERHQQRKDFIDG 846
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE----------RQLEELEAQLEELESKLDELAEELAELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 847 HVENLMTELEIEKSLkhHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESD 926
Cdd:TIGR02168 345 KLEELKEELESLEAE--LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 927 AEALEKRAQETALNLVKA-----EQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKK---EKLTEELQ 998
Cdd:TIGR02168 423 IEELLKKLEEAELKELQAeleelEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdslERLQENLE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 999 SLQRDIKA---AQHSEDHHLQVLRES-----------ETLL------------QAKRAELETLKSQ----------VTSQ 1042
Cdd:TIGR02168 503 GFSEGVKAllkNQSGLSGILGVLSELisvdegyeaaiEAALggrlqavvvenlNAAKKAIAFLKQNelgrvtflplDSIK 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1043 QQELAVLDSELGHRREELLLLQDSLAQAKADLQEALT--LGETEVAEKC-SHIREVKSLLEELSF--QKGELnVHI---- 1113
Cdd:TIGR02168 583 GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSylLGGVLVVDDLdNALELAKKLRPGYRIvtLDGDL-VRPggvi 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1114 ---SEKKTQLAL-IQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLE 1189
Cdd:TIGR02168 662 tggSAKTNSSILeRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1190 LENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEES--- 1266
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEaan 821
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1267 ----NKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTK 1342
Cdd:TIGR02168 822 lrerLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1343 CQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIREsKLRLDQQEMMFQKLQKEREREEqkfeagkvtLE 1422
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEE---------AR 971
|
730
....*....|.
gi 568913760 1423 QQQRQLEKELT 1433
Cdd:TIGR02168 972 RRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1025-1701 |
4.35e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.26 E-value: 4.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1025 LQAKRAE-LETLKSQVTSQQQELAVLD-SELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEEL 1102
Cdd:TIGR02168 207 RQAEKAErYKELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1103 SFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVD 1182
Cdd:TIGR02168 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1183 VLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQ----- 1257
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEleele 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1258 RVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVA---EVQQQLQGKQEAINSLQEELDSTQDHLDLAK 1334
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDsleRLQENLEGFSEGVKALLKNQSGLSGILGVLS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1335 Q--------------------DLIHTTKCQNELLNEQTQLQEDISKWM---------ARLESCQKETETKEQQVQQLQDE 1385
Cdd:TIGR02168 527 ElisvdegyeaaieaalggrlQAVVVENLNAAKKAIAFLKQNELGRVTflpldsikgTEIQGNDREILKNIEGFLGVAKD 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1386 IRESKLRL---------------------------------------------------DQQEMMFQKLQKEREREEQKF 1414
Cdd:TIGR02168 607 LVKFDPKLrkalsyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKI 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1415 EAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLAL 1494
Cdd:TIGR02168 687 EE----LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1495 QKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALKIQRSQLEK----------NLLEQKQENSCMQKEMATIELVAQD 1564
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDElraeltllneEAANLRERLESLERRIAATERRLED 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1565 NHERARRLMKELSQMQQEYLELKKQVANQKD----LERRQMEVSDAMRTLKSEvKDEIRTSLRNLNQFLPELPADLASIL 1640
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEELIEELESeleaLLNERASLEEALALLRSE-LEELSEELRELESKRSELRRELEELR 921
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568913760 1641 ERNENLR-ELESLKENFPfTTKERIFEEKSNFPQVhIMDEHWRGEALRQRLRRHEDQLKAQL 1701
Cdd:TIGR02168 922 EKLAQLElRLEGLEVRID-NLQERLSEEYSLTLEE-AEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1282-1567 |
4.75e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 4.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1282 RKLRQELEQLSQDKLALH-----SEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQE 1356
Cdd:COG1196 216 RELKEELKELEAELLLLKlreleAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1357 DISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQK 1436
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1437 SRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTER 1516
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 568913760 1517 KKAEKQVAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHE 1567
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
853-1501 |
2.13e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.87 E-value: 2.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 853 TELEIEKSLKHHEDIVDEIECLEKTLLKRRSELRE-ADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALE 931
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEElNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 932 KRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSE 1011
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1012 DHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADL---QEALTLGETEVAEK 1088
Cdd:TIGR02169 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLskyEQELYDLKEEYDRV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1089 CSHIREVKSLLEELSFQKGELNVHISEKKTQ-----------LALIQQEMEKEEK-------------NLQVV------- 1137
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEERVRGGRAVeevlkasiqgvHGTVAQLGSVGERyataievaagnrlNNVVVeddavak 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1138 --LQQLSRHKTELKNVADILQLETSELQGLKLQHDQKV------VELEKAQVDVLEEKLELENLQQATQQQRRELERQR- 1208
Cdd:TIGR02169 562 eaIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIgfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRm 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1209 -----QLLE---------RDRRETERV----RAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKME 1270
Cdd:TIGR02169 642 vtlegELFEksgamtggsRAPRGGILFsrsePAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1271 QSNLGKLELSVRKLRQELEQ-------LSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDlihttkc 1343
Cdd:TIGR02169 722 EKEIEQLEQEEEKLKERLEEleedlssLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP------- 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1344 qnELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESklrldQQEMMFQKLQK-EREREEQKFEAGKVTLE 1422
Cdd:TIGR02169 795 --EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL-----QEQRIDLKEQIkSIEKEIENLNGKKEELE 867
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568913760 1423 QQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQeeeRRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDM 1501
Cdd:TIGR02169 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELE---RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
69-545 |
8.57e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 8.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 69 LQEYLGTIKGQATQAQNECRKLQDEKEtllQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGD 148
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELA---ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 149 LSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQD 228
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 229 DNSLLKKQLKEFQNHLnhvvdglihpEEVAARVDELRKRLKLGAGEMRihspsdvlgkSLADLQKQFSEILARSQWEKEE 308
Cdd:COG1196 394 AAAELAAQLEELEEAE----------EALLERLERLEEELEELEEALA----------ELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 309 AQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEA 388
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 389 DEEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQ 468
Cdd:COG1196 534 AAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 469 EAERFS---REAMQAAKDLSRAEAEIELLQHLLREREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRLRD 545
Cdd:COG1196 614 RYYVLGdtlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
256-549 |
1.54e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 256 EVAARVDELRKRLKLGAGEMRIHSpsdvlgksLADLQKQFSEILArsqwEKEEAQVRERKLHEEMALQQEKLANGQEEFR 335
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLK--------LRELEAELEELEA----ELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 336 QACERALEARIKFdkRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQE 415
Cdd:COG1196 278 ELELELEEAQAEE--YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 416 QFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQ 495
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 568913760 496 HLLREREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRLRDVLNL 549
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
777-1616 |
2.81e-12 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 72.39 E-value: 2.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 777 RLEDIMQHLKSKQREERRQKASTQhseEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFIDGHVENLMTELE 856
Cdd:TIGR00606 302 QLNDLYHNHQRTVREKERELVDCQ---RELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 857 IEkSLKHHEDIVDEIECLEKtlLKRRSELREAdRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQE 936
Cdd:TIGR00606 379 LD-GFERGPFSERQIKNFHT--LVIERQEDEA-KTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 937 TALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEinkvvAAKDADFQCLNEKKEKLTEELQSLQRDIKA-AQHSE--DH 1013
Cdd:TIGR00606 455 ELKFVIKELQQLEGSSDRILELDQELRKAERELSK-----AEKNSLTETLKKEVKSLQNEKADLDRKLRKlDQEMEqlNH 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1014 HLQVLRESETLLQAKRAELETLKSQVTSQQQELA----------VLDSELGHRREELLLLQDSLAQAKADLQEALTLget 1083
Cdd:TIGR00606 530 HTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTsllgyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQN--- 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1084 evaeKCSHIREVKSLLE-ELSFQKGELNVHISE-KKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADilqlETSE 1161
Cdd:TIGR00606 607 ----KNHINNELESKEEqLSSYEDKLFDVCGSQdEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTD----ENQS 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1162 LQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQ----LLERDRRETERVRAESQALQSCVECLSK 1237
Cdd:TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDemlgLAPGRQSIIDLKEKEIPELRNKLQKVNR 758
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1238 EKEDLQGQCESWEKKSShaqrVLAATEESNKMEQSNLG---KLELSVRKLRQELEQLSQ--DKLALHSEVAEVQQQLQGK 1312
Cdd:TIGR00606 759 DIQRLKNDIEEQETLLG----TIMPEEESAKVCLTDVTimeRFQMELKDVERKIAQQAAklQGSDLDRTVQQVNQEKQEK 834
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1313 QEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDiskwMARLESCQKETETKEQQVQQLQDEIRESKLR 1392
Cdd:TIGR00606 835 QHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTN----LQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1393 LDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSaaEGRLGTLQEEERRIEGLermlsq 1472
Cdd:TIGR00606 911 DSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ--DGKDDYLKQKETELNTV------ 982
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1473 aKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFltERKKAEKQVAGLKEALKIQRSQL-EKNLLEQKQENSCM 1551
Cdd:TIGR00606 983 -NAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNL--TLRKRENELKEVEEELKQHLKEMgQMQVLQMKQEHQKL 1059
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 1552 QKEMATIelvaQDNHERARRLMKELSQmQQEYLELKKQVANQKDLERRQMEVSDAMRTLKSEVKD 1616
Cdd:TIGR00606 1060 EENIDLI----KRNHVLALGRQKGYEK-EIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
777-1486 |
9.34e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.48 E-value: 9.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 777 RLEDIMQHLKSKQREERRQKASTQHS-EEEVDGLHRDIDDLLQEKKELEleveelhRTIERHQQRKDFIDGHVENLMTEL 855
Cdd:TIGR02169 273 LLEELNKKIKDLGEEEQLRVKEKIGElEAEIASLERSIAEKERELEDAE-------ERLAKLEAEIDKLLAEIEELEREI 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 856 EIEKSLKhhEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQ 935
Cdd:TIGR02169 346 EEERKRR--DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 936 ETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHHL 1015
Cdd:TIGR02169 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1016 QVLRES---ETLLQAKRAELETLKSQVTSQQQELAV-LDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVA--EKC 1089
Cdd:TIGR02169 504 ERVRGGravEEVLKASIQGVHGTVAQLGSVGERYATaIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLplNKM 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1090 SHIREVKSLLEELSFQKGELNVHISEKKTQLA--------LIQQEMEKEEKNLQVVlqQLSRHKTELKNVADILQLETSE 1161
Cdd:TIGR02169 584 RDERRDLSILSEDGVIGFAVDLVEFDPKYEPAfkyvfgdtLVVEDIEAARRLMGKY--RMVTLEGELFEKSGAMTGGSRA 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1162 LQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQscveclsKEKED 1241
Cdd:TIGR02169 662 PRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE-------QEEEK 734
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1242 LQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDklALHSEVAEVQQQLQGKQEAINSLQE 1321
Cdd:TIGR02169 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR--LSHSRIPEIQAELSKLEEEVSRIEA 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1322 ELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLdqqemmfQ 1401
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL-------G 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1402 KLQKEREREEQKFEAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIE---GLERMLSQAKQQLS 1478
Cdd:TIGR02169 886 DLKKERDELEAQLRE----LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEeipEEELSLEDVQAELQ 961
|
....*...
gi 568913760 1479 EREQQLMA 1486
Cdd:TIGR02169 962 RVEEEIRA 969
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
850-1413 |
1.11e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 70.15 E-value: 1.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 850 NLMTELEI--EKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELactKEKTKSAVEKFTDAKRNLLQTESDA 927
Cdd:pfam15921 296 SIQSQLEIiqEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEEL---EKQLVLANSELTEARTERDQFSQES 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 928 EALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAA 1007
Cdd:pfam15921 373 GNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1008 QHSEDHHLQvlresetllqakraELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAE 1087
Cdd:pfam15921 453 IQGKNESLE--------------KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAE 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1088 KCSHIREVKSLLEELSFQKGELNvHISEKKTQLALIQQEMEKEEKNLQVVLQQLSR-----------------HKTELKN 1150
Cdd:pfam15921 519 ITKLRSRVDLKLQELQHLKNEGD-HLRNVQTECEALKLQMAEKDKVIEILRQQIENmtqlvgqhgrtagamqvEKAQLEK 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1151 VADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQR-QLLErdrrETERVRAESQALQ 1229
Cdd:pfam15921 598 EINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERdQLLN----EVKTSRNELNSLS 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1230 SCVECLSKEKEDlqgqceswekksshaqrvlaateESNKMEQSNlGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQL 1309
Cdd:pfam15921 674 EDYEVLKRNFRN-----------------------KSEEMETTT-NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVA 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1310 QGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRES 1389
Cdd:pfam15921 730 MGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANM 809
|
570 580
....*....|....*....|....
gi 568913760 1390 KLRLDQQEMMFQKLQKEREREEQK 1413
Cdd:pfam15921 810 EVALDKASLQFAECQDIIQRQEQE 833
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
792-1604 |
6.95e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.45 E-value: 6.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 792 ERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFIDGHVENLMTELEIEKSLKHH--EDIVD 869
Cdd:pfam15921 91 QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDmlEDSNT 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 870 EIECLEKTLLKRRSELREADRLLAEaenelactkektksavekFTDAKRNLLQTESDAEALEKRAQETALNlvkaeqqlr 949
Cdd:pfam15921 171 QIEQLRKMMLSHEGVLQEIRSILVD------------------FEEASGKKIYEHDSMSTMHFRSLGSAIS--------- 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 950 llqadaedleqhkikqeEILKEINKVVAAKDADFQCLNEKKEKLTEELQSlQRDIKAAQHsEDHHLQVLRESETLLQAKR 1029
Cdd:pfam15921 224 -----------------KILRELDTEISYLKGRIFPVEDQLEALKSESQN-KIELLLQQH-QDRIEQLISEHEVEITGLT 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1030 AELETLKSQVTSQQQELAVLDSELGHRRE----ELLLLQDSLAQAKADLQEALTLGETEVaekcshirevksllEELSFQ 1105
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARNQNSmymrQLSDLESTVSQLRSELREAKRMYEDKI--------------EELEKQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1106 KGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLE 1185
Cdd:pfam15921 351 LVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQR 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1186 EKLELENLQQATQQQrreLERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQ---CESWEKKSSHAQRVLAA 1262
Cdd:pfam15921 431 LEALLKAMKSECQGQ---MERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSERTVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1263 TEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLAL---HSEVAEVQQQLQGKQEAINSLQEELDSTQdhldlakQDLIH 1339
Cdd:pfam15921 508 KERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLrnvQTECEALKLQMAEKDKVIEILRQQIENMT-------QLVGQ 580
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1340 TTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLqdEIRESKLRLDQQEMMFQKLQKEREREEqkfeagkv 1419
Cdd:pfam15921 581 HGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIREL--EARVSDLELEKVKLVNAGSERLRAVKD-------- 650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1420 tLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEE-ERRIEGLERMLSQAKQQLSEREQQLMAKSGE-------L 1491
Cdd:pfam15921 651 -IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEmETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvA 729
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1492 LALQKEADDMRADFSLLRN--QFLTE-RKKAEKQVAGLKEalkiqrsqlEKNLLEQKQENSCMQKEMATIELVAQDNHEr 1568
Cdd:pfam15921 730 MGMQKQITAKRGQIDALQSkiQFLEEaMTNANKEKHFLKE---------EKNKLSQELSTVATEKNKMAGELEVLRSQE- 799
|
810 820 830
....*....|....*....|....*....|....*.
gi 568913760 1569 aRRLMKELSQMQQEYLELKKQVANQKDLERRQMEVS 1604
Cdd:pfam15921 800 -RRLKEKVANMEVALDKASLQFAECQDIIQRQEQES 834
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
32-408 |
1.45e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 32 RIAKETEEIKDLEQQLTDGQIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKE 109
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKEleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 110 ELELIAMDAENMRKEL-AELESALQEQHEVNASLQQAQGDLSAYET---ELETQLKLKDAETSQLKQELEKLLRRTQLEQ 185
Cdd:TIGR02168 758 ELEAEIEELEERLEEAeEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 186 SVLqTELEKERESLRDALGKAQSSEEKQQEN-NELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLihpEEVAARVDEL 264
Cdd:TIGR02168 838 RRL-EDLEEQIEELSEDIESLAAEIEELEELiEELESELEALLNERASLEEALALLRSELEELSEEL---RELESKRSEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 265 RKRLKLgagemrihspsdvlgksladLQKQFSEILARsqweKEEAQVRERKLHEEMALQQEKLANGQEEfrqaceraLEA 344
Cdd:TIGR02168 914 RRELEE--------------------LREKLAQLELR----LEGLEVRIDNLQERLSEEYSLTLEEAEA--------LEN 961
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 345 RIKFDKRQHNARIQQLENEIHYLQE-NLKSMEkiqgltdlQLQEADEEKERILAQLQELEKKKKR 408
Cdd:TIGR02168 962 KIEDDEEEARRRLKRLENKIKELGPvNLAAIE--------EYEELKERYDFLTAQKEDLTEAKET 1018
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
848-1680 |
1.59e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.70 E-value: 1.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 848 VENLMTELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLL-AEAENELACTK-----EKTKSAVEKFTDAKRNL- 920
Cdd:PTZ00121 1029 IEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKpSYKDFDFDAKEdnradEATEEAFGKAEEAKKTEt 1108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 921 --LQTESDAEALEKRAQET--ALNLVKAEQQLRLLQA-DAEDLEQHKI-KQEEILKEINKVVAAKDADFQCLNEKKEKL- 993
Cdd:PTZ00121 1109 gkAEEARKAEEAKKKAEDArkAEEARKAEDARKAEEArKAEDAKRVEIaRKAEDARKAEEARKAEDAKKAEAARKAEEVr 1188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 994 -TEELQSLQ--RDIKAAQHSEDhhLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSElgHRREELLLLQDSLAQA 1070
Cdd:PTZ00121 1189 kAEELRKAEdaRKAEAARKAEE--ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEE--RNNEEIRKFEEARMAH 1264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1071 KADLQEALTLGETEVAEKCSHIREVKSLlEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKN 1150
Cdd:PTZ00121 1265 FARRQAAIKAEEARKADELKKAEEKKKA-DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1151 VADILQLETselqglKLQHDQKVVELEKAQVDVLEEKLELENLQQATQ--QQRRELERQRQLLERDRRETERVRAESQAL 1228
Cdd:PTZ00121 1344 AAEAAKAEA------EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKkaEEKKKADEAKKKAEEDKKKADELKKAAAAK 1417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1229 QSCVEclSKEKEDLQGQCESWEKKSSHAQRvlaATEESNKMEQSNlgKLELSVRKLRqelEQLSQDKLALHSEVAEVQQQ 1308
Cdd:PTZ00121 1418 KKADE--AKKKAEEKKKADEAKKKAEEAKK---ADEAKKKAEEAK--KAEEAKKKAE---EAKKADEAKKKAEEAKKADE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1309 LQGKQEAINSLQEELDSTQDhldlAKQDLIHTTKCQNELLNEQTQLQEDISKwmarLESCQKETETKEQQVQQLQDEIR- 1387
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAE----AKKKADEAKKAEEAKKADEAKKAEEAKK----ADEAKKAEEKKKADELKKAEELKk 1559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1388 -ESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEgRLGTLQEEERRIEGL 1466
Cdd:PTZ00121 1560 aEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQL 1638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1467 ERMLSQAK---QQLSEREQQLMAKSGELlalQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALKIQrsQLEKNLLE 1543
Cdd:PTZ00121 1639 KKKEAEEKkkaEELKKAEEENKIKAAEE---AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE--ELKKKEAE 1713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1544 QKQENSCMQKEMATIELVAQDNHERARRLMKELSQMQQEYLELKKQVANQKDLERRQMEV-SDAMRTLKSEVKDEIRTSL 1622
Cdd:PTZ00121 1714 EKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIrKEKEAVIEEELDEEDEKRR 1793
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 568913760 1623 RNLNQFLPELPADLASILE-RNENLRELESLKENFPFTTKERIFEEKSNFPQVHIMDEH 1680
Cdd:PTZ00121 1794 MEVDKKIKDIFDNFANIIEgGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKH 1852
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
865-1483 |
2.03e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.81 E-value: 2.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 865 EDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKA 944
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 945 EQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEK--------------KEKLTEELQSLQRDIKAA--Q 1008
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKyndlkkqkeeleneLNLLEKEKLNIQKNIDKIknK 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1009 HSEDHH----LQVLRESETLLQAKRAELE----TLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEA--- 1077
Cdd:TIGR04523 196 LLKLELllsnLKKKIQKNKSLESQISELKkqnnQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKqke 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1078 LTLGETEVAEKCSHIREVKSLLEELSFQK-----GELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNva 1152
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLKSEISDLNNQKeqdwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTN-- 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1153 dilqlETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCV 1232
Cdd:TIGR04523 354 -----SESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEI 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1233 ECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLsqdklalhsevaevQQQLQGK 1312
Cdd:TIGR04523 429 ERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK--------------QKELKSK 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1313 QEAINSLQEEldstqdhldlakqdlihttkcQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLR 1392
Cdd:TIGR04523 495 EKELKKLNEE---------------------KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFE 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1393 LDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQ-----RQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLE 1467
Cdd:TIGR04523 554 LKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEkqeliDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
650
....*....|....*.
gi 568913760 1468 RMLSQAKQQLSEREQQ 1483
Cdd:TIGR04523 634 KNIKSKKNKLKQEVKQ 649
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1138-1479 |
2.28e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 2.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1138 LQQLSRHKTELKNVADIL-----QLETSELQGLK-LQHDQKVVELEKAQVDV--------LEEKLELENLQQATQQQRRE 1203
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILnelerQLKSLERQAEKaERYKELKAELRELELALlvlrleelREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1204 LERQRQLLERD----RRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLEL 1279
Cdd:TIGR02168 258 LTAELQELEEKleelRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1280 SVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDIS 1359
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1360 KWMARLESCQKETETKeqqvqqlqdEIRESKLRLDQQEMMFQKLQKEREREEQKFEagkvTLEQQQRQLEKELTDQKSRL 1439
Cdd:TIGR02168 418 RLQQEIEELLKKLEEA---------ELKELQAELEELEEELEELQEELERLEEALE----ELREELEEAEQALDAAEREL 484
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 568913760 1440 KQLltdvsaaEGRLGTLQEEERRIEGLERMLSQAKQQLSE 1479
Cdd:TIGR02168 485 AQL-------QARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-568 |
2.51e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 2.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1 MKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQA 80
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 81 TQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQL 160
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 161 KLKdaetSQLKQELEKLLRRTQleQSVLQTELEKER---ESLRDA-LGKAQSSEEKQ---QENNELRTQLKQLQDDNSLL 233
Cdd:TIGR02168 530 SVD----EGYEAAIEAALGGRL--QAVVVENLNAAKkaiAFLKQNeLGRVTFLPLDSikgTEIQGNDREILKNIEGFLGV 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 234 KKQLKEFQNHLNHVVDGLIHPEEVAARVDELRKRLKLGAGEMRIHSPSDVL---------GKSLADLQKQFSEI-LARSQ 303
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLvrpggvitgGSAKTNSSILERRReIEELE 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 304 WEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKF-----DKRQHNARIQQLENEIHYLQENLKSMEKIQ 378
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalrkDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 379 GLTDLQLQEADEEKERILAQLQELEKKKkredARSQEQFLGLDEELKSLKKAVAASDKLAAA---ELTIAKDQLKSLHGT 455
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQI----EQLKEELKALREALDELRAELTLLNEEAANlreRLESLERRIAATERR 839
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 456 VVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQF---RDEMENADLGAKGANSQLLEIEALNEA 532
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALallRSELEELSEELRELESKRSELRRELEE 919
|
570 580 590
....*....|....*....|....*....|....*.
gi 568913760 533 MAKQRAEItrlrdvlNLTGAGTKGGIENVLEEIAEL 568
Cdd:TIGR02168 920 LREKLAQL-------ELRLEGLEVRIDNLQERLSEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
770-1134 |
2.99e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 2.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 770 NLENEVSRLEDIMQHLKSKQRE--ERRQKASTQHS--EEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFID 845
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAEleKALAELRKELEelEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 846 GHVENLMTELE-----IEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKektksavEKFTDAKRNL 920
Cdd:TIGR02168 754 KELTELEAEIEeleerLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-------EEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 921 LQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSL 1000
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1001 QRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQ-ELAVLDSELGHRREELLLLQDSLAQAKADLQEALT 1079
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKIKELGP 986
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 1080 LGETEVAEkcshIREVKSLLEELSFQKGELNvhisEKKTQLALIQQEMEKEEKNL 1134
Cdd:TIGR02168 987 VNLAAIEE----YEELKERYDFLTAQKEDLT----EAKETLEEAIEEIDREARER 1033
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1031-1618 |
4.07e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.04 E-value: 4.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1031 ELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKadlQEALTLGETEVAEKcshiREVKSLLEELSFQKGELN 1110
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILE---QQIKDLNDKLKKNK----DKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1111 V---HISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEK 1187
Cdd:TIGR04523 114 NdkeQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1188 LELENLQQATQQQRRELERQRQLLerdrRETERVRAESQALQSCVECLSKEKEDLQGQCESWEK-----KSSHAQRVLAA 1262
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKSLE----SQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTqlnqlKDEQNKIKKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1263 TEESNKMEQSN--LGKLELSVRKLRQELEQLSQDKLALHSEvaEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHT 1340
Cdd:TIGR04523 270 SEKQKELEQNNkkIKELEKQLNQLKSEISDLNNQKEQDWNK--ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1341 TKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEmmfqKLQKEREREEQKFEAGKVT 1420
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE----KLNQQKDEQIKKLQQEKEL 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1421 LEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTL----QEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQK 1496
Cdd:TIGR04523 424 LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLdntrESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNE 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1497 EADDMRADFSLLR----------NQFLTERKKAEKQVAGL------------KEALKIQRSQLEKNLLEQKQENSCMQKE 1554
Cdd:TIGR04523 504 EKKELEEKVKDLTkkisslkekiEKLESEKKEKESKISDLedelnkddfelkKENLEKEIDEKNKEIEELKQTQKSLKKK 583
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568913760 1555 MATIELVAQDNHERARRLMKELSQMQQEYLELKKQVANQKDLERRQMEVSDAMRTLKSEVKDEI 1618
Cdd:TIGR04523 584 QEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEV 647
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1256-1595 |
6.73e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 6.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1256 AQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQlSQDKLALHSEVAEVQQQLQGKQeaINSLQEELDSTQDHLDLAKQ 1335
Cdd:TIGR02168 177 TERKLERTRENLDRLEDILNELERQLKSLERQAEK-AERYKELKAELRELELALLVLR--LEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1336 DLihttkcqNELLNEQTQLQEDISkwmaRLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFE 1415
Cdd:TIGR02168 254 EL-------EELTAELQELEEKLE----ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1416 AGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRL----GTLQEEERRIEGLERMLSQAKQ---QLSEREQQLMAKS 1488
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELeeleAELEELESRLEELEEQLETLRSkvaQLELQIASLNNEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1489 GELLALQKEADDMRADF-----SLLRNQFLTERKKAEKQVAGLKEALKIQRSQLEKnlLEQKQENSCMQKEMATIELV-A 1562
Cdd:TIGR02168 403 ERLEARLERLEDRRERLqqeieELLKKLEEAELKELQAELEELEEELEELQEELER--LEEALEELREELEEAEQALDaA 480
|
330 340 350
....*....|....*....|....*....|...
gi 568913760 1563 QDNHERARRLMKELSQMQQEYLELKKQVANQKD 1595
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1282-1480 |
7.56e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.86 E-value: 7.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1282 RKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKW 1361
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1362 MARLESCQKETETK------------------EQQVQQLQDEIREskLRLDQQEMmfQKLQKEREREEQKFEAGKVTLEQ 1423
Cdd:COG4942 110 LRALYRLGRQPPLAlllspedfldavrrlqylKYLAPARREQAEE--LRADLAEL--AALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568913760 1424 QQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSER 1480
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1369-1606 |
1.56e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.09 E-value: 1.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1369 QKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSA 1448
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA----LARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1449 AEGRLGTLQEEerriegLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRAdFSLLRNQFLTERKKAEKQVAGLKE 1528
Cdd:COG4942 95 LRAELEAQKEE------LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-LAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 1529 ALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELSQMQQEYLELKKQVANQKDLERRQMEVSDA 1606
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1052-1594 |
3.31e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 3.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1052 ELGHRREELlllqDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELnvhiSEKKTQLALIQQEMEKEE 1131
Cdd:PRK03918 173 EIKRRIERL----EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL----EKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1132 KNLQVVLQQLSRHKTELKNVADILQLETSELQGLKlqhdQKVVELEKAQVDVLEEKLELENLQQaTQQQRRELERQRQLL 1211
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELE----EKVKELKELKEKAEEYIKLSEFYEE-YLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1212 ERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSnlgKLELSVRKLRQELEQL 1291
Cdd:PRK03918 320 EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR---LTGLTPEKLEKELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1292 SQDKLALHSEVAEVQQ---QLQGKQEAINSLQEELDSTQDHLDLAKQDLihTTKCQNELLNEQTQLQEDISKWMARLESC 1368
Cdd:PRK03918 397 EKAKEEIEEEISKITArigELKKEIKELKKAIEELKKAKGKCPVCGREL--TEEHRKELLEEYTAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1369 QKETETKEQQVQ-------------QLQDEIR--ESKL------RLDQQEMMFQKLQ-------------KEREREEQKF 1414
Cdd:PRK03918 475 ERKLRKELRELEkvlkkeseliklkELAEQLKelEEKLkkynleELEKKAEEYEKLKekliklkgeikslKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1415 EAGKVTLEQQQRQLEKELTDQKSRLKQL-LTDVSAAEGRLGTL-----------------QEEERRIEGLERMLSQAKQQ 1476
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKELepfyneylelkdaekelEREEKELKKLEEELDKAFEE 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1477 LSEREQQLMAKSGELLALQKEADDmrADFSLLRNQFLTERKKAEKQVAGLKEaLKIQRSQLEKNLLEQKQENSCMQKEMA 1556
Cdd:PRK03918 635 LAETEKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEE-LEKRREEIKKTLEKLKEELEEREKAKK 711
|
570 580 590
....*....|....*....|....*....|....*...
gi 568913760 1557 TIELVaqdnhERARRLMKELSQMQQEYLELKKQVANQK 1594
Cdd:PRK03918 712 ELEKL-----EKALERVEELREKVKKYKALLKERALSK 744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-379 |
6.26e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 6.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 53 AANEALKKdLEGVISGLQEYLGTIKGQATQAQnECRKLQDEKETL-----LQRLTEVQQEKEELELIAMDAENMRKELA- 126
Cdd:TIGR02168 183 RTRENLDR-LEDILNELERQLKSLERQAEKAE-RYKELKAELRELelallVLRLEELREELEELQEELKEAEEELEELTa 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 127 ----------ELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKllrrtqleqsvLQTELEKER 196
Cdd:TIGR02168 261 elqeleekleELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE-----------LEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 197 ESLRDALGKAQSSEEKQQennELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLihpEEVAARVDELRKRLKLGAGEMR 276
Cdd:TIGR02168 330 SKLDELAEELAELEEKLE---ELKEELESLEAELEELEAELEELESRLEELEEQL---ETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 277 IhspSDVLGKSLADLQKQFSEILARSQWEKEEAQVRErkLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQhnAR 356
Cdd:TIGR02168 404 R---LEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEELERLEEALEELREELEEAE--QA 476
|
330 340
....*....|....*....|...
gi 568913760 357 IQQLENEIHYLQENLKSMEKIQG 379
Cdd:TIGR02168 477 LDAAERELAQLQARLDSLERLQE 499
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
878-1252 |
7.58e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 7.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 878 LLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQetalnlvKAEQQLRLLQADAED 957
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE-------KLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 958 LEQHKIKQEEILKEINKVVAAKDadfqclnEKKEKLTEELQSLQRDIkaAQHSEDHHLQVLRESETLLQAKRAELETLKS 1037
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELE-------EDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1038 QVTSQQQELAVLDSELGHRREELLLLQDSlaqaKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKK 1117
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQ----IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1118 TQLaliqQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQhDQKVVELEKAQVDVleeklelenlqqat 1197
Cdd:TIGR02169 896 AQL----RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE-DEEIPEEELSLEDV-------------- 956
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 568913760 1198 QQQRRELERQRQLLE----RDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKK 1252
Cdd:TIGR02169 957 QAELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
879-1479 |
1.36e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 59.98 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 879 LKRRSELREADRLLAEAENELACTKEKTKS-----AVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQA 953
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEETQERinrarKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 954 DAEDLEQHKIKQEEILKEinkvvaakdadfqclnEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELE 1033
Cdd:TIGR00618 336 QQSSIEEQRRLLQTLHSQ----------------EIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLC 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1034 TLKSQVTSQQQELAVLDSELGHRREELLLL--QDSLAQAKADLQEALTLGETEVAE-KCSHIREVKSLLEELSFQKGELN 1110
Cdd:TIGR00618 400 KELDILQREQATIDTRTSAFRDLQGQLAHAkkQQELQQRYAELCAAAITCTAQCEKlEKIHLQESAQSLKEREQQLQTKE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1111 VhISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLEL 1190
Cdd:TIGR00618 480 Q-IHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQR 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1191 ENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKME 1270
Cdd:TIGR00618 559 ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCS 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1271 QSNLGKL---------------ELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHL----- 1330
Cdd:TIGR00618 639 QELALKLtalhalqltltqervREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIeeydr 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1331 -----DLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARL-----ESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMF 1400
Cdd:TIGR00618 719 efneiENASSSLGSDLAAREDALNQSLKELMHQARTVLKArteahFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDT 798
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568913760 1401 QKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSE 1479
Cdd:TIGR00618 799 HLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
18-579 |
1.48e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 18 QYTQLESRLDEILCRIAKETEEIKDLEQQLTD--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKE 95
Cdd:TIGR02169 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDaeERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 96 TLLQRLTEVQ-----------QEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKD 164
Cdd:TIGR02169 368 DLRAELEEVDkefaetrdelkDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 165 AETSQLKQELEKL----------LRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLK 234
Cdd:TIGR02169 448 LEIKKQEWKLEQLaadlskyeqeLYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTV 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 235 KQLKEFQ------------NHLNHVVdglIHPEEVAARVDELRKRLKLGA------GEMR-IHSPSDVLGKS-------- 287
Cdd:TIGR02169 528 AQLGSVGeryataievaagNRLNNVV---VEDDAVAKEAIELLKRRKAGRatflplNKMRdERRDLSILSEDgvigfavd 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 288 LADLQKQF---------SEILARSQWEKEE--AQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFdkRQHNAR 356
Cdd:TIGR02169 605 LVEFDPKYepafkyvfgDTLVVEDIEAARRlmGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAEL--QRLRER 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 357 IQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEkkkkREDARSQEQFLGLDEELKSLKKAVAASD- 435
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE----QEEEKLKERLEELEEDLSSLEQEIENVKs 758
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 436 -------KLAAAELTIAKDQLK------SLHGTVVRINQERAEELQEAERFSREAMQAA-KDLSRAEAEIELLQHLLRER 501
Cdd:TIGR02169 759 elkeleaRIEELEEDLHKLEEAlndleaRLSHSRIPEIQAELSKLEEEVSRIEARLREIeQKLNRLTLEKEYLEKEIQEL 838
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 502 EGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRLRDVLnltgAGTKGGIENVLEEIAELRHAVSAQNEYI 579
Cdd:TIGR02169 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL----GDLKKERDELEAQLRELERKIEELEAQI 912
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-582 |
2.30e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 2.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 2 KAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLtdgQIAANEalKKDLEGVISGLQEYLGTIKGQAT 81
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK---QILRER--LANLERQLEELEAQLEELESKLD 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 82 QAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKEL-AELESALQEQHEVNASLQQAQGDLSAYETELEtQL 160
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELeEQLETLRSKVAQLELQIASLNNEIERLEARLE-RL 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 161 KLKDAETSQLKQELEKLLRRTQLEQSVLQ--------TELEKERESLRDALGKAQ-SSEEKQQENNELRTQLKQLQDDNS 231
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKELQAEleeleeelEELQEELERLEEALEELReELEEAEQALDAAERELAQLQARLD 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 232 LLKKQLKEFQN------------------------------------------HLNHVV--------DGLIHPEEVAAR- 260
Cdd:TIGR02168 493 SLERLQENLEGfsegvkallknqsglsgilgvlselisvdegyeaaieaalggRLQAVVvenlnaakKAIAFLKQNELGr 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 261 -----VDELRKRLKLGAGEMRIHSPSDVLG------KSLADLQKQFSEILARSQW------------------------- 304
Cdd:TIGR02168 573 vtflpLDSIKGTEIQGNDREILKNIEGFLGvakdlvKFDPKLRKALSYLLGGVLVvddldnalelakklrpgyrivtldg 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 305 -------------EKEEAQVRERK-----LHEEMALQQEKLANGQEEfRQACERALEArIKFDKRQHNARIQQLENEIHY 366
Cdd:TIGR02168 653 dlvrpggvitggsAKTNSSILERRreieeLEEKIEELEEKIAELEKA-LAELRKELEE-LEEELEQLRKELEELSRQISA 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 367 LQENLKSMEKIQG-------LTDLQLQEADEEKERILAQLQELEKKKKREDARSQEqflgLDEELKSLKKAVAASDKlaa 439
Cdd:TIGR02168 731 LRKDLARLEAEVEqleeriaQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALRE--- 803
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 440 aELTIAKDQLKSLHGTVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLrEREGQFRDEMEnadlgakga 519
Cdd:TIGR02168 804 -ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI-EELEELIEELE--------- 872
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568913760 520 nsqlLEIEALNEAMAKQRAEITRLRDVLNLTGAgtkgGIENVLEEIAELRHAVSAQNEYISSM 582
Cdd:TIGR02168 873 ----SELEALLNERASLEEALALLRSELEELSE----ELRELESKRSELRRELEELREKLAQL 927
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
26-546 |
2.64e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.90 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 26 LDEILCRIAKETEEIKDLEQQLTDGQ--IAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTE 103
Cdd:PRK02224 239 ADEVLEEHEERREELETLEAEIEDLRetIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 104 VQQEKEELeliamdaenmRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKllRRTQL 183
Cdd:PRK02224 319 LEDRDEEL----------RDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED--RREEI 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 184 EqsvlqtELEKERESLRDALGKAQSSEEKQQENNELrtqlkqLQDDNSLLKKQLKEFQNHLnhvvdglihpEEVAARVDE 263
Cdd:PRK02224 387 E------ELEEEIEELRERFGDAPVDLGNAEDFLEE------LREERDELREREAELEATL----------RTARERVEE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 264 LRKRLKLGAgemrihspSDVLGKSLADlqkqfSEILARSQWEKEEAQVRERKLhEEMALQQEKLANGQEEFRQACERALE 343
Cdd:PRK02224 445 AEALLEAGK--------CPECGQPVEG-----SPHVETIEEDRERVEELEAEL-EDLEEEVEEVEERLERAEDLVEAEDR 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 344 ARIKFDKRQH-NARIQQLENEIHYLQENLKSMEKiqgltDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLG-LD 421
Cdd:PRK02224 511 IERLEERREDlEELIAERRETIEEKRERAEELRE-----RAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAeLK 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 422 EELKSLKKAVAASDKLAAAELTIakDQLKSLHGTVVRINQERAEELQE--------AERFSREAMQAAK-DLSRAEAEIE 492
Cdd:PRK02224 586 ERIESLERIRTLLAAIADAEDEI--ERLREKREALAELNDERRERLAEkrerkrelEAEFDEARIEEAReDKERAEEYLE 663
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 568913760 493 LLQHLLREREGQfRDEMENAdlgAKGANSQLLEIEALNEAMAKQRAEITRLRDV 546
Cdd:PRK02224 664 QVEEKLDELREE-RDDLQAE---IGAVENELEELEELRERREALENRVEALEAL 713
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
775-1682 |
3.42e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 58.90 E-value: 3.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 775 VSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIErhQQRKDFIDGHvenlmtE 854
Cdd:TIGR00606 240 VKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTD--EQLNDLYHNH------Q 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 855 LEIEKSLKHHEDIVDEIECLEKtllkrrsELREADRLLAEAENELACTKEKTKSAVEKFT--DAKRNLLQTESDAEALEK 932
Cdd:TIGR00606 312 RTVREKERELVDCQRELEKLNK-------ERRLLNQEKTELLVEQGRLQLQADRHQEHIRarDSLIQSLATRLELDGFER 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 933 RA----QETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQ 1008
Cdd:TIGR00606 385 GPfserQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1009 HSEDHHLQVLRESETLLQAKRaeletlksqvtsqqqELAVLDSElgHRREELLLLQDSLAQAKADLQEALTLGETEVAEK 1088
Cdd:TIGR00606 465 QLEGSSDRILELDQELRKAER---------------ELSKAEKN--SLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQL 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1089 cSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQ 1168
Cdd:TIGR00606 528 -NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQN 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1169 HDQKVVELEKAQVDVLEEKLELENLqQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCES 1248
Cdd:TIGR00606 607 KNHINNELESKEEQLSSYEDKLFDV-CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQR 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1249 WEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSqdklalhSEVAEVQQQLQGKQEAINSLQEELDSTQD 1328
Cdd:TIGR00606 686 VFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEML-------GLAPGRQSIIDLKEKEIPELRNKLQKVNR 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1329 HLDLAKQDLIHTTKcQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKERE 1408
Cdd:TIGR00606 759 DIQRLKNDIEEQET-LLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHE 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1409 REE--QKFEAGKVTLEQQQRQ---LEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQ 1483
Cdd:TIGR00606 838 LDTvvSKIELNRKLIQDQQEQiqhLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1484 LmaksgellalqkeaDDMRADFSLLRNQFLTERKKAEKQVAGLKEALK---IQRSQLEKNLLEQKqENSCMQKEMATIEL 1560
Cdd:TIGR00606 918 L--------------EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKnihGYMKDIENKIQDGK-DDYLKQKETELNTV 982
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1561 VAQ--DNHERARRLMKELSQMQQEYLELKKQVANQKD---LERRQMEVSDAMRTLKSEVKDEIRTSLRNLNQFLPELPAD 1635
Cdd:TIGR00606 983 NAQleECEKHQEKINEDMRLMRQDIDTQKIQERWLQDnltLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEEN 1062
|
890 900 910 920
....*....|....*....|....*....|....*....|....*..
gi 568913760 1636 LASIlERNENLreleSLKENFPFTTKERIFEEKSNFPQVHIMDEHWR 1682
Cdd:TIGR00606 1063 IDLI-KRNHVL----ALGRQKGYEKEIKHFKKELREPQFRDAEEKYR 1104
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
2-546 |
3.44e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 58.70 E-value: 3.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 2 KAQKRGKEQQLDIMNRQYTQLESRLDEIL----CRIAKETEEIKDLEQQLTDGQIAANEALKKDLEgvisglqeylgtik 77
Cdd:pfam12128 282 QETSAELNQLLRTLDDQWKEKRDELNGELsaadAAVAKDRSELEALEDQHGAFLDADIETAAADQE-------------- 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 78 gQATQAQNECRKLQDEKETLLQRLTEVQQEKEELEL-----------------------IAMDAENMRKELAELESALQE 134
Cdd:pfam12128 348 -QLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSkikeqnnrdiagikdklakireaRDRQLAVAEDDLQALESELRE 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 135 QHE--------------VNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELE---KLLRRTQLEQSVLQTELEKERE 197
Cdd:pfam12128 427 QLEagklefneeeyrlkSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEaanAEVERLQSELRQARKRRDQASE 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 198 SLRDAlgkAQSSEEKQQENNELRTQL-KQLQDDNSLLKKQLKEFQNHLNHVVDGL------IHPEEVAARVDELRKRLKL 270
Cdd:pfam12128 507 ALRQA---SRRLEERQSALDELELQLfPQAGTLLHFLRKEAPDWEQSIGKVISPEllhrtdLDPEVWDGSVGGELNLYGV 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 271 GAGEMRIHSPS------------DVLGKSL---ADLQKQFSEILARSQWEKEEAQVRE---RKLHEEMALQQEKLANGQE 332
Cdd:pfam12128 584 KLDLKRIDVPEwaaseeelrerlDKAEEALqsaREKQAAAEEQLVQANGELEKASREEtfaRTALKNARLDLRRLFDEKQ 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 333 EFRQACERALEARikfdKRQHNARIQQLENEIHYLQENLKSMEKIQgltDLQLQEADEEKeriLAQLQELEKKKKREDAR 412
Cdd:pfam12128 664 SEKDKKNKALAER----KDSANERLNSLEAQLKQLDKKHQAWLEEQ---KEQKREARTEK---QAYWQVVEGALDAQLAL 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 413 SQEQFL----GLDEELKSLKKAVAAS-DKLAAAELTIAK--DQLKSLHGTVVRINQERAEELQ----EAERFSREAMQAA 481
Cdd:pfam12128 734 LKAAIAarrsGAKAELKALETWYKRDlASLGVDPDVIAKlkREIRTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLA 813
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 482 KDLSRAEAEIELLQHLLREREGQFRDEMENADLGAKGANSQLLEieaLNEAMAKQRAEITRLRDV 546
Cdd:pfam12128 814 TQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVR---LSENLRGLRCEMSKLATL 875
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
902-1486 |
3.57e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 3.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 902 TKEKTKSAVEKFTD---AKRNLLQTESDAEALEkRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEeilkeinkvVAA 978
Cdd:COG4913 223 TFEAADALVEHFDDlerAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRR---------LEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 979 KDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRES--------ETLLQAKRAELETLKSQVTSQQQELAVLD 1050
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1051 SELGHRREELLLLQ-------DSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLA-- 1121
Cdd:COG4913 373 LPLPASAEEFAALRaeaaallEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAea 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1122 -------------LIQQEMEKE--------------------EKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQ 1168
Cdd:COG4913 453 lgldeaelpfvgeLIEVRPEEErwrgaiervlggfaltllvpPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1169 HDQKVVELE----------KAQVD-------VLEEKLELENLQQATQQ-------QRRELERQRQLLER------DRRET 1218
Cdd:COG4913 533 PDSLAGKLDfkphpfrawlEAELGrrfdyvcVDSPEELRRHPRAITRAgqvkgngTRHEKDDRRRIRSRyvlgfdNRAKL 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1219 ERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEesnkmEQSNLGKLELSVRKLRQELEQLSQDklal 1298
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSW-----DEIDVASAEREIAELEAELERLDAS---- 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1299 HSEVAEVQQQLQGKQEAINSLQEELDSTQDHldlakqdlihttkcQNELLNEQTQLQEDISKWMARLESCQKETEtkEQQ 1378
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGE--------------IGRLEKELEQAEEELDELQDRLEAAEDLAR--LEL 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1379 VQQLQDEIRESKLRLDQQEmMFQKLQKEREREEQKfeagkvtLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQE 1458
Cdd:COG4913 748 RALLEERFAAALGDAVERE-LRENLEERIDALRAR-------LNRAEEELERAMRAFNREWPAETADLDADLESLPEYLA 819
|
650 660 670
....*....|....*....|....*....|
gi 568913760 1459 EERRIE--GLERMLSQAKQQLSEREQQLMA 1486
Cdd:COG4913 820 LLDRLEedGLPEYEERFKELLNENSIEFVA 849
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1358-1655 |
3.72e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 3.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1358 ISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGK-------VTLEQQQRQLEK 1430
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELallvlrlEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1431 ELTDQKSRLKQLLTDVSAAEGRLGTL----QEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFS 1506
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELrlevSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1507 LLRNQflteRKKAEKQVAGLKEALKiqrsQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELSQMQQEYLEL 1586
Cdd:TIGR02168 327 ELESK----LDELAEELAELEEKLE----ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568913760 1587 KKQVANQKD--------LERRQMEVSDAMRTLKSEVKDEIRTSLRNLNQFLPELPADLASILERNENLRELESLKEN 1655
Cdd:TIGR02168 399 NNEIERLEArlerledrRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
853-1655 |
3.75e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.83 E-value: 3.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 853 TELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREadRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEK 932
Cdd:pfam02463 202 LKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNE--ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 933 RAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSED 1012
Cdd:pfam02463 280 EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1013 HHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVL-----------DSELGHRREELLLLQDSLAQAKADLQEALTLG 1081
Cdd:pfam02463 360 ELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEElelkseeekeaQLLLELARQLEDLLKEEKKEELEILEEEEESI 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1082 ETEVA--EKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLET 1159
Cdd:pfam02463 440 ELKQGklTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDG 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1160 SELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETeRVRAESQALQSCVECLSKEK 1239
Cdd:pfam02463 520 VGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGAR-KLRLLIPKLKLPLKSIAVLE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1240 EDLQGQCESWEKKSSHAQrvlaateESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSL 1319
Cdd:pfam02463 599 IDPILNLAQLDKATLEAD-------EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSEL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1320 QEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLEscqkETETKEQQVQQLQDEIRESKLRLDQQEMM 1399
Cdd:pfam02463 672 TKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE----AEELLADRVQEAQDKINEELKLLKQKIDE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1400 FQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLltdvsaaegrlgTLQEEERRIEGLERMLSQAKQQLSE 1479
Cdd:pfam02463 748 EEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEE------------EKEEKLKAQEEELRALEEELKEEAE 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1480 REQQLMAKSGELLALQKEADDMRADfsllrnqflterKKAEKQVAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIE 1559
Cdd:pfam02463 816 LLEEEQLLIEQEEKIKEEELEELAL------------ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQK 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1560 LVaqDNHERARRLMKELSQMQQEYLELKKQVANQKDLERRQMEVSDAMRTLKSEVKDEIRTSLRNLNQFLPELPADLASI 1639
Cdd:pfam02463 884 LK--DELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEER 961
|
810
....*....|....*.
gi 568913760 1640 LERNENLRELESLKEN 1655
Cdd:pfam02463 962 NKRLLLAKEELGKVNL 977
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
69-572 |
3.90e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 3.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 69 LQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGD 148
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 149 LSAYETELETQLK-LKDAETSQLK-QELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQL 226
Cdd:PRK03918 271 LKKEIEELEEKVKeLKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKEL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 227 QDDNSLLKKQLKEFQNHLNHVVD--------GLIHPEEVAARVDELRKR--------LKLGAGEMRIHSPSDVLGKSLAD 290
Cdd:PRK03918 351 EKRLEELEERHELYEEAKAKKEElerlkkrlTGLTPEKLEKELEELEKAkeeieeeiSKITARIGELKKEIKELKKAIEE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 291 LQKQFSEI-LARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHYLQE 369
Cdd:PRK03918 431 LKKAKGKCpVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 370 NLKSME-----------------------KIQGLTD--LQLQEADEEKERILAQLQELEKKK----KREDARSQEQFLGL 420
Cdd:PRK03918 511 KLKKYNleelekkaeeyeklkekliklkgEIKSLKKelEKLEELKKKLAELEKKLDELEEELaellKELEELGFESVEEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 421 DEELKSLKKAVAASDKL--AAAELTIAKDQLKSLHGTVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEiellqhLL 498
Cdd:PRK03918 591 EERLKELEPFYNEYLELkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE------EL 664
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568913760 499 REREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRLRDVLNLtgagtkggIENVLEEIAELRHAV 572
Cdd:PRK03918 665 REEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK--------LEKALERVEELREKV 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1207-1441 |
5.55e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.08 E-value: 5.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1207 QRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQ 1286
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1287 ELEQLSQdklalhsEVAEVQQQLQgkQEAINSLQEELDSTQDHLDLAKQDLIHttkcqNELLNEQTQLQEDISKWMARLE 1366
Cdd:COG4942 98 ELEAQKE-------ELAELLRALY--RLGRQPPLALLLSPEDFLDAVRRLQYL-----KYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 1367 SCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQ 1441
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1114-1654 |
8.29e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.36 E-value: 8.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1114 SEKKTQLALIQQEME-KEEKNLQvvlQQLSRHKTELKNVadilqleTSELQGLKLQHDQKVVELEKAQvdvlEEKLELEN 1192
Cdd:PRK02224 183 SDQRGSLDQLKAQIEeKEEKDLH---ERLNGLESELAEL-------DEEIERYEEQREQARETRDEAD----EVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1193 LQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCEsweKKSSHAQRVLAATEESNKMEQS 1272
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG---LDDADAEAVEARREELEDRDEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1273 nlgkLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKqdlihttkcqnellNEQT 1352
Cdd:PRK02224 326 ----LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRR--------------EEIE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1353 QLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKV------------- 1419
Cdd:PRK02224 388 ELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCpecgqpvegsphv 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1420 -TLEQQQRQLEkELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEA 1498
Cdd:PRK02224 468 eTIEEDRERVE-ELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERA 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1499 DDMRADFSLLRNQFLTERKKAEKQVAGLKEalkiqrsqLEKNLLEQKQENSCMQKEMATIELVAqDNHERARRLMKELSQ 1578
Cdd:PRK02224 547 AELEAEAEEKREAAAEAEEEAEEAREEVAE--------LNSKLAELKERIESLERIRTLLAAIA-DAEDEIERLREKREA 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1579 MQQEYLELKKQVANQKDlERRQMEVS---DAMRTLKSEvKDEIRTSLRNLNQFLPELPADLASILER----NENLRELES 1651
Cdd:PRK02224 618 LAELNDERRERLAEKRE-RKRELEAEfdeARIEEARED-KERAEEYLEQVEEKLDELREERDDLQAEigavENELEELEE 695
|
...
gi 568913760 1652 LKE 1654
Cdd:PRK02224 696 LRE 698
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-470 |
9.02e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 9.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 2 KAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLT------DGQIAANEALKKDLEGVISGLQEYLGT 75
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEeleeelAELEEELEELEEELEELEEELEEAEEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 76 IKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETE 155
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 156 LETQLK-LKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLK 234
Cdd:COG1196 433 LEEEEEeEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 235 KQLKEFQNHLNHVVDGLIH-----------------------PEEVAARVDELRKRLKLGAGE------MRIHSPSDVLG 285
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGveaayeaaleaalaaalqnivveDDEVAAAAIEYLKAAKAGRATflpldkIRARAALAAAL 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 286 KSLADL-----------------QKQFSEILARSQW-------------------------------------------E 305
Cdd:COG1196 593 ARGAIGaavdlvasdlreadaryYVLGDTLLGRTLVaarleaalrravtlagrlrevtlegeggsaggsltggsrrellA 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 306 KEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQL 385
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 386 QEADEEKERILAQLQELEKKKKR-------------EDARSQEQFLGLDEELKSLKKAvaasdklaaaeltiakdqLKSL 452
Cdd:COG1196 753 LEELPEPPDLEELERELERLEREiealgpvnllaieEYEELEERYDFLSEQREDLEEA------------------RETL 814
|
570
....*....|....*...
gi 568913760 453 HGTVVRINQERAEELQEA 470
Cdd:COG1196 815 EEAIEEIDRETRERFLET 832
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3-227 |
1.05e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 3 AQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQqltdgQIAANEALKKDLEGVISGLQEYLGTIKGQATQ 82
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER-----RIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 83 AQNECRKLQDEKETLLQRL-TEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLK 161
Cdd:COG4942 95 LRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 162 LKDAETSQLKQELEKLLRRTQlEQSVLQTELEKERESLRDALgkaqssEEKQQENNELRTQLKQLQ 227
Cdd:COG4942 175 ELEALLAELEEERAALEALKA-ERQKLLARLEKELAELAAEL------AELQQEAEELEALIARLE 233
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2-215 |
1.41e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 2 KAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQL--TDGQIAANEALKKDLEGVISGLQEYLgtikgq 79
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELaaLEAELAELEKEIAELRAELEAQKEEL------ 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 80 ATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQ 159
Cdd:COG4942 107 AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 160 LKLKDAETSQLKQELEKLLRRTQLEQSVLQtELEKERESLRDALGKAQSSEEKQQE 215
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELA-ELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
865-1472 |
1.54e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 865 EDIVDEIECLEKTLLKRRseLREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKA 944
Cdd:PRK02224 190 DQLKAQIEEKEEKDLHER--LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETI 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 945 EQQLRLLQADAEDLEQHKIKQEEILKEINKVVAA---KDADFQCLNEKKEKLTEELQSLQRDIkaaqhsEDHHLQVLRES 1021
Cdd:PRK02224 268 AETEREREELAEEVRDLRERLEELEEERDDLLAEaglDDADAEAVEARREELEDRDEELRDRL------EECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1022 ETLlQAKRAELETLKSQVTSQQQELAVLDSELGHRREELlllqDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEE 1101
Cdd:PRK02224 342 EEA-ESLREDADDLEERAEELREEAAELESELEEAREAV----EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1102 LSFQKGELNVHISEKKTQLALIQQEMEKEEKnlqvvLQQLSRHKTELKNVADILQLETSElqglklQHDQKVVELE---- 1177
Cdd:PRK02224 417 LREERDELREREAELEATLRTARERVEEAEA-----LLEAGKCPECGQPVEGSPHVETIE------EDRERVEELEaele 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1178 --KAQVDVLEEKLELENLQQATQQQRRELERQRQLLErDRRETERVRAESQALQscVECLSKEKEDLQGQCESWEKKSSH 1255
Cdd:PRK02224 486 dlEEEVEEVEERLERAEDLVEAEDRIERLEERREDLE-ELIAERRETIEEKRER--AEELRERAAELEAEAEEKREAAAE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1256 AqrvlaatEESNKMEQSNLGKLELSVRKLRQELEQLsqDKLA-LHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDlak 1334
Cdd:PRK02224 563 A-------EEEAEEAREEVAELNSKLAELKERIESL--ERIRtLLAAIADAEDEIERLREKREALAELNDERRERLA--- 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1335 qdlihttkcqnELLNEQTQLQEDISKwmARLESCQKETETKEQQVQQLQDEIREsklrldqqemmfqklqKEREREEQKF 1414
Cdd:PRK02224 631 -----------EKRERKRELEAEFDE--ARIEEAREDKERAEEYLEQVEEKLDE----------------LREERDDLQA 681
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568913760 1415 EAGKVTLEQQQ----RQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEE--ERRIEGLERMLSQ 1472
Cdd:PRK02224 682 EIGAVENELEEleelRERREALENRVEALEALYDEAEELESMYGDLRAElrQRNVETLERMLNE 745
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
771-1442 |
2.01e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.39 E-value: 2.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 771 LENEVSRLEDIMQHLKSKQ-REERRQKASTQHS---EEEVDGLHRDI----DDLLQEKKELELEVEELHRTIER-HQQRK 841
Cdd:pfam12128 253 LESAELRLSHLHFGYKSDEtLIASRQEERQETSaelNQLLRTLDDQWkekrDELNGELSAADAAVAKDRSELEAlEDQHG 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 842 DFIDGHVENLMTELEIEKSLKHHEDIVDEIecLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAK-RNL 920
Cdd:pfam12128 333 AFLDADIETAAADQEQLPSWQSELENLEER--LKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARdRQL 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 921 LQTESDAEALEK--RAQETALNLVKAEQQLRLLQADAE---DLEQHKIKQEEILKEINKVVAAKDADfqclnEKKEKLTE 995
Cdd:pfam12128 411 AVAEDDLQALESelREQLEAGKLEFNEEEYRLKSRLGElklRLNQATATPELLLQLENFDERIERAR-----EEQEAANA 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 996 ELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQEL-AVLDSELGHRREELLLLQDSLAQAKADL 1074
Cdd:pfam12128 486 EVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLlHFLRKEAPDWEQSIGKVISPELLHRTDL 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1075 QEALT----------------LGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKnlqvvl 1138
Cdd:pfam12128 566 DPEVWdgsvggelnlygvkldLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASR------ 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1139 qQLSRHKTELKNVADILQLETSELQGLKLQHdQKVVELEKAQVdvleekleLENLQQATQQQRRELERQRQLLERDRRET 1218
Cdd:pfam12128 640 -EETFARTALKNARLDLRRLFDEKQSEKDKK-NKALAERKDSA--------NERLNSLEAQLKQLDKKHQAWLEEQKEQK 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1219 ERVRAESQALQSCVECLSKEKEDLQGQceSWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLAL 1298
Cdd:pfam12128 710 REARTEKQAYWQVVEGALDAQLALLKA--AIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERI 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1299 HSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLihttkcQNELLNEQTQLQEDISKWMARLESCQKETETKEQQ 1378
Cdd:pfam12128 788 AVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISEL------QQQLARLIADTKLRRAKLEMERKASEKQQVRLSEN 861
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 1379 VQQLQDEIRE-SKLRLDQQEMMFQKLQKEREREEQKFeagKVTLEQQQRQLEKELTDQKSRLKQL 1442
Cdd:pfam12128 862 LRGLRCEMSKlATLKEDANSEQAQGSIGERLAQLEDL---KLKRDYLSESVKKYVEHFKNVIADH 923
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
18-240 |
2.17e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 2.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 18 QYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQIAAnealkKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETL 97
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL-----KALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 98 LQRLTEVQQEKEELELIAMDA----ENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQE 173
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLaaeiEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 174 LEKLlrRTQLEQSVLQ-TELEKERESLRDALGKAQS--SEEKQQENNELRTQLKQLQDDNSLLKKQLKEF 240
Cdd:TIGR02168 917 LEEL--REKLAQLELRlEGLEVRIDNLQERLSEEYSltLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
876-1581 |
2.23e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.13 E-value: 2.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 876 KTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQADA 955
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARI 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 956 EDLEQHKIKQEEILKEIN------KVVAAKDADFQC----------LNEKKEKLTEELQSLQRDIKAAQ----------- 1008
Cdd:TIGR00618 270 EELRAQEAVLEETQERINrarkaaPLAAHIKAVTQIeqqaqrihteLQSKMRSRAKLLMKRAAHVKQQSsieeqrrllqt 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1009 -HSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAE 1087
Cdd:TIGR00618 350 lHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1088 KCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQ--QEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGL 1165
Cdd:TIGR00618 430 KKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQslKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGS 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1166 KLQHDQKVVELEKAQVD---VLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDL 1242
Cdd:TIGR00618 510 CIHPNPARQDIDNPGPLtrrMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNL 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1243 QGQceswekksshAQRVLAATEESNKMEQSNLGKLELSVRKLrqeleQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEE 1322
Cdd:TIGR00618 590 QNI----------TVRLQDLTEKLSEAEDMLACEQHALLRKL-----QPEQDLQDVRLHLQQCSQELALKLTALHALQLT 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1323 LDSTQDHLDLAKqdlihtTKCQNELLNEQTQLQEDiskwmarlescqkETETKEQQVQQLQDEIRESKLRLDQQEMMFQK 1402
Cdd:TIGR00618 655 LTQERVREHALS------IRVLPKELLASRQLALQ-------------KMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1403 LQKEREREEQKFEAGKVTLEQQ----QRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLS 1478
Cdd:TIGR00618 716 YDREFNEIENASSSLGSDLAARedalNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLRE 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1479 EREQQLMAKSGEllaLQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMATI 1558
Cdd:TIGR00618 796 EDTHLLKTLEAE---IGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKII 872
|
730 740
....*....|....*....|...
gi 568913760 1559 ELVAQDNHERARRLMKELSQMQQ 1581
Cdd:TIGR00618 873 QLSDKLNGINQIKIQFDGDALIK 895
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1279-1548 |
2.63e-07 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 55.83 E-value: 2.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1279 LSVRKLRQELEQLSQDKLALHSEVAEVqqqLQGKQEAINSLQEELDSTQDHldlakQDLIH-----TTKCQNELLNEqTQ 1353
Cdd:PRK10929 23 PDEKQITQELEQAKAAKTPAQAEIVEA---LQSALNWLEERKGSLERAKQY-----QQVIDnfpklSAELRQQLNNE-RD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1354 LQEDISKWMArlescqkeTETKEQQVQQLQDEIREsKLRLDQQEmmfqklqKEREREeqkFEAGKVTLEQQQRQLEKELT 1433
Cdd:PRK10929 94 EPRSVPPNMS--------TDALEQEILQVSSQLLE-KSRQAQQE-------QDRARE---ISDSLSQLPQQQTEARRQLN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1434 DQKSRLKQLLTDVSA-AEGRLGTLQEEERRIEGLERMLSQAkqQLSEREQQLMAK-SGELLalQKEADDMRADFSLLRNQ 1511
Cdd:PRK10929 155 EIERRLQTLGTPNTPlAQAQLTALQAESAALKALVDELELA--QLSANNRQELARlRSELA--KKRSQQLDAYLQALRNQ 230
|
250 260 270
....*....|....*....|....*....|....*..
gi 568913760 1512 FLTERKKAEKQVAGLKEALKIQRSQLEKNLLEQKQEN 1548
Cdd:PRK10929 231 LNSQRQREAERALESTELLAEQSGDLPKSIVAQFKIN 267
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1362-1538 |
3.21e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 3.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1362 MARLESCQKETETKEQQVQQLQdEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKV-TLEQQQRQLEKELTDQKSRLK 1440
Cdd:COG4913 234 FDDLERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLeLLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1441 QLLTDVSAAEGRLGTLQEEER-----RIEGLERMLSQAKQQLSEREQ--------------QLMAKSGELLALQKEADDM 1501
Cdd:COG4913 313 RLEARLDALREELDELEAQIRgnggdRLEQLEREIERLERELEERERrrarleallaalglPLPASAEEFAALRAEAAAL 392
|
170 180 190
....*....|....*....|....*....|....*..
gi 568913760 1502 RADFSLLRNQFLTERKKAEKQVAGLKEALKIQRSQLE 1538
Cdd:COG4913 393 LEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1029-1453 |
3.88e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.18 E-value: 3.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1029 RAELETLKSQVTSQQQELAVLDSELGHRREELLLlqdSLAQAKADLQEALTLGETEVAEKCSHIREVKslleelsfqkgE 1108
Cdd:pfam01576 203 RQELEKAKRKLEGESTDLQEQIAELQAQIAELRA---QLAKKEEELQAALARLEEETAQKNNALKKIR-----------E 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1109 LNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADilqlETSELQGLKLQHDQKVVELEKAQVDvlEEKL 1188
Cdd:pfam01576 269 LEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLD----TTAAQQELRSKREQEVTELKKALEE--ETRS 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1189 ELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHA-------QRVLA 1261
Cdd:pfam01576 343 HEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLegqlqelQARLS 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1262 ATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAinsLQEEldstqdhldlAKQDLIHTT 1341
Cdd:pfam01576 423 ESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQEL---LQEE----------TRQKLNLST 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1342 KCQnellneqtQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTL 1421
Cdd:pfam01576 490 RLR--------QLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQL 561
|
410 420 430
....*....|....*....|....*....|..
gi 568913760 1422 EQQQRQLEKeLTDQKSRLKQLLTDVSAAEGRL 1453
Cdd:pfam01576 562 EEKAAAYDK-LEKTKNRLQQELDDLLVDLDHQ 592
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
874-1088 |
3.90e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 55.02 E-value: 3.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 874 LEKTLLKRRSELREADRLLAE--AENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLL 951
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 952 QADAE--DLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEdhhLQVLRESETLLQAKR 1029
Cdd:COG3206 260 LQSPViqQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE---LEALQAREASLQAQL 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568913760 1030 AELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKadLQEALTLGETEVAEK 1088
Cdd:COG3206 337 AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR--LAEALTVGNVRVIDP 393
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
995-1530 |
4.17e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 4.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 995 EELQSLQRDIKAAQHSEDHhLQVLRESETLLQAKRAELETLKSQVTS-----QQQELAVLDSELGHRREELLLLQDSLAQ 1069
Cdd:COG4913 235 DDLERAHEALEDAREQIEL-LEPIRELAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1070 AKADLQEALtlgetevaekcshiREVKSLLEELSFQKGElnvhisekktQLALIQQEMEKEEKNLQVVLQQLSRHKTELK 1149
Cdd:COG4913 314 LEARLDALR--------------EELDELEAQIRGNGGD----------RLEQLEREIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1150 NVadilqletselqGLKLQHDQKvvELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQ 1229
Cdd:COG4913 370 AL------------GLPLPASAE--EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1230 S-------------CVECLSKEKE--------DLQGQCESWEK---------------KSSHAQRVLAATEesnkmeqSN 1273
Cdd:COG4913 436 SniparllalrdalAEALGLDEAElpfvgeliEVRPEEERWRGaiervlggfaltllvPPEHYAAALRWVN-------RL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1274 LGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQlqgKQEAINSLQEELDSTQDHL------DLAKQDLIHTTKCQ--- 1344
Cdd:COG4913 509 HLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFK---PHPFRAWLEAELGRRFDYVcvdspeELRRHPRAITRAGQvkg 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1345 ---------------------------NELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQ--DEIRESKLRLDQ 1395
Cdd:COG4913 586 ngtrhekddrrrirsryvlgfdnraklAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVAS 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1396 QEMMFQKLQKEREReeqkFEAGKVTLEQQQRQLEkELTDQKSRLKQLLTDVSAAEGRLgtlqeeERRIEGLERMLSQAKQ 1475
Cdd:COG4913 666 AEREIAELEAELER----LDASSDDLAALEEQLE-ELEAELEELEEELDELKGEIGRL------EKELEQAEEELDELQD 734
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 1476 QLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEAL 1530
Cdd:COG4913 735 RLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
77-431 |
4.37e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 4.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 77 KGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKEL-AELESALQEQHEVNASLQQAQGDLSAYE-- 153
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKERLEELEEDLSSLEqe 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 154 --------TELETQLKLKDAETSQLKQELEKL---LRRTQLEQSVLQ-TELEKERESLRDALGKAQSSEEKQQENNELRT 221
Cdd:TIGR02169 753 ienvkselKELEARIEELEEDLHKLEEALNDLearLSHSRIPEIQAElSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 222 QLKQ-LQDDNSLLKKQLKEFQNHLnhvvdglihpEEVAARVDELRKRLKLGAGEMRihspsdVLGKSLADLQKQFSEI-- 298
Cdd:TIGR02169 833 KEIQeLQEQRIDLKEQIKSIEKEI----------ENLNGKKEELEEELEELEAALR------DLESRLGDLKKERDELea 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 299 -LARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEfrqacERALEARIKFDKR--QHNARIQQLENEIHYLQENLKSME 375
Cdd:TIGR02169 897 qLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE-----LSEIEDPKGEDEEipEEELSLEDVQAELQRVEEEIRALE 971
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 376 KIQGLtdlqlqeADEEKERILAQLQELEKKKKREdARSQEQFLGLDEELKSLKKAV 431
Cdd:TIGR02169 972 PVNML-------AIQEYEEVLKRLDELKEKRAKL-EEERKAILERIEEYEKKKREV 1019
|
|
| Drf_FH1 |
pfam06346 |
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs) ... |
686-757 |
4.83e-07 |
|
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues.
Pssm-ID: 461881 [Multi-domain] Cd Length: 157 Bit Score: 51.41 E-value: 4.83e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 686 PPfvPPPGYIMYTVLPDGSPVPQGVALYAPSPPLPNSSH----PLTPGTVVYGPPPAGaPIIYGPPPANFAVPLVP 757
Cdd:pfam06346 82 PP--PPPLPGGAGIPPPPPPLPGGAGVPPPPPPLPGGPGipppPPFPGGPGIPPPPPG-MGMPPPPPFGFGVPAAP 154
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
770-1252 |
4.83e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 4.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 770 NLENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERhqqrkdfidghve 849
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK------------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 850 nlmtELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENElactKEKTKSAVEKFTDAKRNLLQTESDAEA 929
Cdd:PRK03918 292 ----AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 930 LEK-RAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLtEELQSLQRD--IKA 1006
Cdd:PRK03918 364 YEEaKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI-EELKKAKGKcpVCG 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1007 AQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELgHRREELLLLQDSLAQAKADLQEALTLGETEVA 1086
Cdd:PRK03918 443 RELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVL-KKESELIKLKELAEQLKELEEKLKKYNLEELE 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1087 EKCSHIREVKSLLEELSFQKGELNVHISEK---KTQLALIQQEMEKEEKNLQVVLQQLS--------------------- 1142
Cdd:PRK03918 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLeelKKKLAELEKKLDELEEELAELLKELEelgfesveeleerlkelepfy 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1143 RHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQrrELERQRQLLERDRRETERVR 1222
Cdd:PRK03918 602 NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE--EYEELREEYLELSRELAGLR 679
|
490 500 510
....*....|....*....|....*....|
gi 568913760 1223 AESQALQSCVECLSKEKEDLQGQCESWEKK 1252
Cdd:PRK03918 680 AELEELEKRREEIKKTLEKLKEELEEREKA 709
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
988-1632 |
6.13e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 6.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 988 EKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQdsl 1067
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE--- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1068 aqakadlqealtlgetevaekcshirEVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQvVLQQLSRHKTE 1147
Cdd:PRK03918 235 --------------------------ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE-ELEEKVKELKE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1148 LKNVADilqlETSELQGLKLQHDQKVVELEKaqvdvleeklelenlqqatqqqrrELERqrqlLERDRRETERVRAESQA 1227
Cdd:PRK03918 288 LKEKAE----EYIKLSEFYEEYLDELREIEK------------------------RLSR----LEEEINGIEERIKELEE 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1228 LQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSnlgKLELSVRKLRQELEQLSQDKLALHSEVAEVQQ 1307
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR---LTGLTPEKLEKELEELEKAKEEIEEEISKITA 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1308 QlqgkqeaINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTqlQEDISKWMARLESCQKETETKEQQVQQLQDEIR 1387
Cdd:PRK03918 413 R-------IGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR--KELLEEYTAELKRIEKELKEIEEKERKLRKELR 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1388 ESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQlEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLE 1467
Cdd:PRK03918 484 ELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK-AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1468 RMLSQAKQQLSEREQQLMAKSGELLalqKEADDMRADFSLLRNQFLtERKKAEKQVAGLKEALKIQRSQLEKNLLEQKQE 1547
Cdd:PRK03918 563 KKLDELEEELAELLKELEELGFESV---EELEERLKELEPFYNEYL-ELKDAEKELEREEKELKKLEEELDKAFEELAET 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1548 NSCMQKEMATIE----LVAQDNHERARRLMKELSQmqqeylELKKQVANQKDLERRQMEVSDAMRTLKSEVK--DEIRTS 1621
Cdd:PRK03918 639 EKRLEELRKELEelekKYSEEEYEELREEYLELSR------ELAGLRAELEELEKRREEIKKTLEKLKEELEerEKAKKE 712
|
650
....*....|.
gi 568913760 1622 LRNLNQFLPEL 1632
Cdd:PRK03918 713 LEKLEKALERV 723
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
32-564 |
6.37e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 6.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 32 RIAKETEEIKDLEQQL--TDGQIAANEALKKDLEGVISGLQEYLGTIKGQA-TQAQNECRKLQDEKETLLQRLTEVQQEK 108
Cdd:COG4913 289 RLELLEAELEELRAELarLEAELERLEARLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 109 EELELiamDAENMRKELAELESALQEQHEvnaSLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRtqleQSVL 188
Cdd:COG4913 369 AALGL---PLPASAEEFAALRAEAAALLE---ALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR----KSNI 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 189 QTELEKERESLRDALGKAQSseekqqennELR--TQLKQLQDDNsllkkqlKEFQNHLNHVVDG----LIHPEE----VA 258
Cdd:COG4913 439 PARLLALRDALAEALGLDEA---------ELPfvGELIEVRPEE-------ERWRGAIERVLGGfaltLLVPPEhyaaAL 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 259 ARVDELRKRLKLGAGEMRIHSPSDVLGKSLADlqkqfsEILARSQWEKEEAQVR-ERKLHEEMALQQeklANGQEEFRQA 337
Cdd:COG4913 503 RWVNRLHLRGRLVYERVRTGLPDPERPRLDPD------SLAGKLDFKPHPFRAWlEAELGRRFDYVC---VDSPEELRRH 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 338 cERAL--EARIKFDKRQHNARIQQLENEIHYLQENlkSMEKIQGLTDlQLQEADEEKERILAQLQELEKKKKREDARsQE 415
Cdd:COG4913 574 -PRAItrAGQVKGNGTRHEKDDRRRIRSRYVLGFD--NRAKLAALEA-ELAELEEELAEAEERLEALEAELDALQER-RE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 416 QFLGLDEELKSLKKAVAASDKLAaaELTIAKDQLKSLHGTVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQ 495
Cdd:COG4913 649 ALQRLAEYSWDEIDVASAEREIA--ELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE 726
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568913760 496 HLLREREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRLRDVLNLTGAGTKGGIENVLEE 564
Cdd:COG4913 727 EELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
926-1471 |
6.72e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 6.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 926 DAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQrdik 1005
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE---- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1006 aaqhSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDS------LAQAKADLQEALT 1079
Cdd:PRK03918 235 ----ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKaeeyikLSEFYEEYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1080 LGETEVAEKCSHIREVKSLLEELSFQKGELNvHISEKKTQLALIQQEMEKEEKNLQVVLQ---QLSRHKTELKN------ 1150
Cdd:PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLE-ELKKKLKELEKRLEELEERHELYEEAKAkkeELERLKKRLTGltpekl 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1151 VADILQLETS--ELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRREL--ERQRQLLERDRRETERVRAESQ 1226
Cdd:PRK03918 390 EKELEELEKAkeEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELteEHRKELLEEYTAELKRIEKELK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1227 ALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLElsvrKLRQELEQLSQDKLALHSEVAEVQ 1306
Cdd:PRK03918 470 EIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELE----KKAEEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1307 QQLQGKQEAINSLqEELDSTQDHLDLAKQDLIHTTKCQN----ELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQL 1382
Cdd:PRK03918 546 KELEKLEELKKKL-AELEKKLDELEEELAELLKELEELGfesvEELEERLKELEPFYNEYLELKDAEKELEREEKELKKL 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1383 QDEIRESKLRLDQQEMMFQKLQKEREREEQKF--------EAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLG 1454
Cdd:PRK03918 625 EEELDKAFEELAETEKRLEELRKELEELEKKYseeeyeelREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
570
....*....|....*..
gi 568913760 1455 TLQEEERRIEGLERMLS 1471
Cdd:PRK03918 705 EREKAKKELEKLEKALE 721
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
82-509 |
6.79e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 6.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 82 QAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQeQHEVNASLQQAQGDLSAYETELEtQLK 161
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAELPERLE-ELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 162 LKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSS-EEKQQENNELRTQLKQLQDDNSLLKKQLKEF 240
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEElEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 241 QNHLNHvvdglihpEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADLQK----------QFSEILARSQWEKEEAQ 310
Cdd:COG4717 233 ENELEA--------AALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllaLLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 311 VRERKLHEEMALQQEKLANGQEEFRqaCERALEARIKFDKRQHNARIQQLENEIHYLQENLK---SMEKIQGLTDLQLQE 387
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALG--LPPDLSPEELLELLDRIEELQELLREAEELEEELQleeLEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 388 ADEEKERILAQLQELEKKKKREDARSQ--EQFLGLDEELKSLKKAVAASDKLA--AAELTIAKDQLKSLHGTVVRINQER 463
Cdd:COG4717 383 DEEELRAALEQAEEYQELKEELEELEEqlEELLGELEELLEALDEEELEEELEelEEELEELEEELEELREELAELEAEL 462
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 464 ---------AEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEM 509
Cdd:COG4717 463 eqleedgelAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPV 517
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
303-577 |
7.67e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 7.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 303 QWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIkfdkRQHNARIQQLENEIHYLQENLKSMEKiqgltd 382
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL----AELEAELEELRLELEELELELEEAQA------ 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 383 lQLQEADEEKERILAQLQELEKKKKREDARSQEqflgLDEELKSLKKAVAAsdklAAAELTIAKDQLKSLHGTVVRINQE 462
Cdd:COG1196 289 -EEYELLAELARLEQDIARLEERRRELEERLEE----LEEELAELEEELEE----LEEELEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 463 RAEELQEAERFSREAMQAAKDLSRAEAEIELLQhllrEREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITR 542
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEAL----RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270
....*....|....*....|....*....|....*
gi 568913760 543 LRDVLNLTGAGTKGGIENVLEEIAELRHAVSAQNE 577
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
892-1646 |
7.83e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.28 E-value: 7.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 892 LAEAENELACTKEKTKSAVEKFTDAKRNLlqtesdaealeKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKE 971
Cdd:TIGR00606 226 ITSKEAQLESSREIVKSYENELDPLKNRL-----------KEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEK 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 972 InkvvaakdadFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQqelavlDS 1051
Cdd:TIGR00606 295 V----------FQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQA------DR 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1052 ELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQK-GELNVHISEKKTQLALIQQEMEKE 1130
Cdd:TIGR00606 359 HQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLcADLQSKERLKQEQADEIRDEKKGL 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1131 EKNLQVVLQQLSRHKTELKNVADILQ-LETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQ 1209
Cdd:TIGR00606 439 GRTIELKKEILEKKQEELKFVIKELQqLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLR 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1210 LLERDRREtervraesqalqscvecLSKEKEDLQgQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELE 1289
Cdd:TIGR00606 519 KLDQEMEQ-----------------LNHHTTTRT-QMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLH 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1290 QLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQtQLQEDISKWMARLESCQ 1369
Cdd:TIGR00606 581 SKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLE-RLKEEIEKSSKQRAMLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1370 KETETKEQQVQQLQDEiRESKLRLDQQEMmfqKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAA 1449
Cdd:TIGR00606 660 GATAVYSQFITQLTDE-NQSCCPVCQRVF---QTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGR 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1450 EGRLGTLQEE----ERRIEGLERMLSQAKQQLSEREQQLmaksGELLALQKEADDMRADFSLLRnQFLTERKKAEKQVAg 1525
Cdd:TIGR00606 736 QSIIDLKEKEipelRNKLQKVNRDIQRLKNDIEEQETLL----GTIMPEEESAKVCLTDVTIME-RFQMELKDVERKIA- 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1526 lKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELSQMQQEYLELKKQVANQKDLERRQMEVSD 1605
Cdd:TIGR00606 810 -QQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEE 888
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 568913760 1606 AMRTLKSEVKDEIRTSLRNLNQFLPeLPADLASILERNENL 1646
Cdd:TIGR00606 889 QLVELSTEVQSLIREIKDAKEQDSP-LETFLEKDQQEKEEL 928
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1134-1703 |
8.39e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.20 E-value: 8.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1134 LQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLE- 1212
Cdd:TIGR00618 175 LDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEe 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1213 --RDRRETERVRAESQALQSCVECLSKEKEDLQGQCEsWEKKSSHAQRVlaatEESNKMEQSNLGKLELSVRKLRQELEQ 1290
Cdd:TIGR00618 255 qlKKQQLLKQLRARIEELRAQEAVLEETQERINRARK-AAPLAAHIKAV----TQIEQQAQRIHTELQSKMRSRAKLLMK 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1291 lSQDKLALHSEVAEVQQQLQGKQEAINSLQEELD---STQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMA-RLE 1366
Cdd:TIGR00618 330 -RAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEvatSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDIlQRE 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1367 SCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFE-AGKVTLEQQQRQLEKELTDQKSRLKQLLTD 1445
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEkIHLQESAQSLKEREQQLQTKEQIHLQETRK 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1446 VSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSERE---QQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEKQ 1522
Cdd:TIGR00618 489 KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGpltRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1523 VAGLkEALKIQRSQLEKNLLEQKQENSCMQKematiELVAQDNHERARRLM--KELSQMQQEYLELKKQVANQKDLERRQ 1600
Cdd:TIGR00618 569 QQSF-SILTQCDNRSKEDIPNLQNITVRLQD-----LTEKLSEAEDMLACEqhALLRKLQPEQDLQDVRLHLQQCSQELA 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1601 MEVSDAMRTLKSEVKDEIRTSLRNLNQFLPELPADLASILERNENL-RELESLKENFPFT------------TKERIFEE 1667
Cdd:TIGR00618 643 LKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEkEQLTYWKEMLAQCqtllrelethieEYDREFNE 722
|
570 580 590
....*....|....*....|....*....|....*.
gi 568913760 1668 KSNFPQVHIMDEHWRGEALRQRLRRHEDQLKAQLRH 1703
Cdd:TIGR00618 723 IENASSSLGSDLAAREDALNQSLKELMHQARTVLKA 758
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1313-1519 |
1.29e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1313 QEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLR 1392
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1393 LDQQE----MMFQKLQKEREREEQKF--------EAGKV-----TLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRL-G 1454
Cdd:COG4942 99 LEAQKeelaELLRALYRLGRQPPLALllspedflDAVRRlqylkYLAPARREQAEELRADLAELAALRAELEAERAELeA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 1455 TLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKA 1519
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
880-1568 |
1.32e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 880 KRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKR-NLLQTESDAEALEKRAQEtalNLVKAEQQLRllqADAEDL 958
Cdd:PTZ00121 1224 KKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMaHFARRQAAIKAEEARKAD---ELKKAEEKKK---ADEAKK 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 959 EQHKIKQEEILKEINKVVAAKDADFQCLNEKK--EKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQA--KRAELET 1034
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKkaDAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAaeKKKEEAK 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1035 LKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETevAEKCSHIREVKSLLEELSfQKGELNVHIS 1114
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK--AEEKKKADEAKKKAEEAK-KADEAKKKAE 1454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1115 EKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGlKLQHDQKVVELEKAQvDVLEEKLELENLQ 1194
Cdd:PTZ00121 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK-AAEAKKKADEAKKAE-EAKKADEAKKAEE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1195 QATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNL 1274
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1275 GKlelsvrklrQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQL 1354
Cdd:PTZ00121 1613 KK---------AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1355 QEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKER-EREEQKFEAGKVTLEQQQRQLEKELT 1433
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKkEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1434 DQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQlSEREQQLMAKSGELLALQKEADDMRA-DFSLLRNQF 1512
Cdd:PTZ00121 1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDN-FANIIEGGKEGNLVINDSKEMEDSAIkEVADSKNMQ 1842
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568913760 1513 LTERKKAEKQVAGL-----KEALKIQRSQLEKNLLEQKQENSCMQKEmatIELVAQDNHER 1568
Cdd:PTZ00121 1843 LEEADAFEKHKFNKnnengEDGNKEADFNKEKDLKEDDEEEIEEADE---IEKIDKDDIER 1900
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
853-1150 |
1.63e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 853 TELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEK 932
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 933 RAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSed 1012
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN-- 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1013 hhlqvLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELghrrEELLLLQDSLaqakadlqealtlgETEVAEKCSHI 1092
Cdd:TIGR04523 484 -----LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKI----SSLKEKIEKL--------------ESEKKEKESKI 540
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568913760 1093 REVKSLLEELSFQKGELNV-----HISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKN 1150
Cdd:TIGR04523 541 SDLEDELNKDDFELKKENLekeidEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIK 603
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1196-1537 |
1.70e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.42 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1196 ATQQQRRELERQRQLLERDRRETERVRAESQ----ALQSCVECLSKEKEDLQGQCESwekKSSHAQRVLAATEESNKMEQ 1271
Cdd:PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLAAEQyrlvEMARELAELNEAESDLEQDYQA---ASDHLNLVQTALRQQEKIER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1272 SNLGKLELSVRklrqeLEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQ 1351
Cdd:PRK04863 353 YQADLEELEER-----LEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1352 TQLQED---ISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQK-----------------EREREE 1411
Cdd:PRK04863 428 QLCGLPdltADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKiagevsrseawdvarelLRRLRE 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1412 QKFEAGKV--------TLEQ---QQRQLEKELTDQKSRLKQLLTDVSAAEGrlgTLQEEERRIEGLERMLSQAKQ----- 1475
Cdd:PRK04863 508 QRHLAEQLqqlrmrlsELEQrlrQQQRAERLLAEFCKRLGKNLDDEDELEQ---LQEELEARLESLSESVSEARErrmal 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1476 -----QLSEREQQLMAKSGELLALQK----------EADDMRADFSLLRNQFLTERKKA---EKQVAGLKEALKIQRSQL 1537
Cdd:PRK04863 585 rqqleQLQARIQRLAARAPAWLAAQDalarlreqsgEEFEDSQDVTEYMQQLLERERELtveRDELAARKQALDEEIERL 664
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1194-1553 |
1.83e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 53.16 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1194 QQATQQQRRELERQRQLLERDRRETE-------RVRAESQALQSCVECLSKEKEDLQGQCESWEKKsshaQRVLAATEES 1266
Cdd:COG5022 765 LQALKRIKKIQVIQHGFRLRRLVDYElkwrlfiKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREK----KLRETEEVEF 840
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1267 NKMEQSNLGKLELSVRKL-RQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQeELDSTQDHLDlakQDLIHTTKCQN 1345
Cdd:COG5022 841 SLKAEVLIQKFGRSLKAKkRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSIS-SLKLVNLELE---SEIIELKKSLS 916
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1346 ELLNEQTQLQediSKWMARLESCQKETETKEQ---------QVQQLQDEIRESKLRLDQQEMMFQKLQKERER---EEQK 1413
Cdd:COG5022 917 SDLIENLEFK---TELIARLKKLLNNIDLEEGpsieyvklpELNKLHEVESKLKETSEEYEDLLKKSTILVREgnkANSE 993
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1414 FEAGKVTLEQQQRQLEkELTDQKSRLKQLLTDVS---AAEGRLGTLQEEERR---IEGLERMLSQAKQQLSEREQQLMAK 1487
Cdd:COG5022 994 LKNFKKELAELSKQYG-ALQESTKQLKELPVEVAelqSASKIISSESTELSIlkpLQKLKGLLLLENNQLQARYKALKLR 1072
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 1488 SGELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALKIQRSQLEKNLLEQKQENSCMQK 1553
Cdd:COG5022 1073 RENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQL 1138
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
37-239 |
1.87e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 37 TEEIKDLEQQL--TDGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELi 114
Cdd:COG4942 19 ADAAAEAEAELeqLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 115 amDAENMRKELAELESALQEQHEVNA--------SLQQAQGDLSAYETELETQLKLKDAETSQLK--QELEKLLRRTQLE 184
Cdd:COG4942 98 --ELEAQKEELAELLRALYRLGRQPPlalllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAelAALRAELEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 185 QSVLQTELEKERESLRDALG-KAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKE 239
Cdd:COG4942 176 LEALLAELEEERAALEALKAeRQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1044-1669 |
2.09e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.05 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1044 QELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKcshIREVKSLLEELSFQKGELNVHISEKKTQLALI 1123
Cdd:pfam02463 180 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE---YLLYLDYLKLNEERIDLLQELLRDEQEEIESS 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1124 QQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRE 1203
Cdd:pfam02463 257 KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1204 -LERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSvR 1282
Cdd:pfam02463 337 iEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA-R 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1283 KLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLihTTKCQNELLNEQTQLQEDISKWM 1362
Cdd:pfam02463 416 QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS--EDLLKETQLVKLQEQLELLLSRQ 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1363 ARLESCQKETETKEQQVQQLQDEIRESKLRLDQqemmFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQL 1442
Cdd:pfam02463 494 KLEERSQKESKARSGLKVLLALIKDGVGGRIIS----AHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRA 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1443 LTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEKQ 1522
Cdd:pfam02463 570 LTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLR 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1523 VAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELSQMQQEYLELKKQVANQKDLERRQME 1602
Cdd:pfam02463 650 KGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQE 729
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568913760 1603 VSDAMRTLKSEVKDEIRTSLRNLNQFLPELPADLASILERNENLRELESLKENFPFTTKERIFEEKS 1669
Cdd:pfam02463 730 AQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKL 796
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
888-1102 |
2.54e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 888 ADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEE 967
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 968 ILKEINKVVAAK-DADFQCLNEKKEKLTEELQSLQRDIKAAQHSEdHHLQVLRESETLLQAKRAELETLKSQVTSQQQEL 1046
Cdd:COG4942 98 ELEAQKEELAELlRALYRLGRQPPLALLLSPEDFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 1047 AVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEEL 1102
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1369-1596 |
2.88e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.33 E-value: 2.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1369 QKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKER-----EREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLL 1443
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1444 TDVSAAEGRLGTLQEEERrIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDmradfslLRNQFLTERKKAEKQV 1523
Cdd:COG3206 247 AQLGSGPDALPELLQSPV-IQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA-------LRAQLQQEAQRILASL 318
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568913760 1524 AGLKEALKIQRSQLEKNLLEQKQEnscmqkematielvaqdnherarrlMKELSQMQQEYLELKKQVANQKDL 1596
Cdd:COG3206 319 EAELEALQAREASLQAQLAQLEAR-------------------------LAELPELEAELRRLEREVEVAREL 366
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
975-1220 |
3.13e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 3.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 975 VVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELG 1054
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1055 HRREELLLLQDSLAQAKADLQealtlgetevaeKCSHIREVKSLLEELSFQKGELNVHIsekktqLALIQQEMEKEEKNL 1134
Cdd:COG4942 94 ELRAELEAQKEELAELLRALY------------RLGRQPPLALLLSPEDFLDAVRRLQY------LKYLAPARREQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1135 QVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERD 1214
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
....*.
gi 568913760 1215 RRETER 1220
Cdd:COG4942 236 AAAAAE 241
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1266-1598 |
3.15e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.05 E-value: 3.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1266 SNKMEQSNLGKLELSvrKLRQELEQLSQDkLALHSEVAEVQQQLQG---KQEAINSLQEELDSTQD-HLDLAKQDlihTT 1341
Cdd:pfam17380 285 SERQQQEKFEKMEQE--RLRQEKEEKARE-VERRRKLEEAEKARQAemdRQAAIYAEQERMAMERErELERIRQE---ER 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1342 KCQNELLNEQtQLQEDISKwMARLESCQKETETKEQQVQQ---------LQDEIRESKLRLDQQEMMFQKLQKE--RERE 1410
Cdd:pfam17380 359 KRELERIRQE-EIAMEISR-MRELERLQMERQQKNERVRQeleaarkvkILEEERQRKIQQQKVEMEQIRAEQEeaRQRE 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1411 EQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQakQQLSEREQQLMAKSGE 1490
Cdd:pfam17380 437 VRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILE--KELEERKQAMIEEERK 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1491 LLALQKEaddmradfsllrnqfLTERKKAEKQVAGLKEALKIQRSQLEKNLLEQKQEnscmQKEMATIELVAQDNHERAR 1570
Cdd:pfam17380 515 RKLLEKE---------------MEERQKAIYEEERRREAEEERRKQQEMEERRRIQE----QMRKATEERSRLEAMERER 575
|
330 340 350
....*....|....*....|....*....|
gi 568913760 1571 RLMKEL--SQMQQEYLELKKQVANQKDLER 1598
Cdd:pfam17380 576 EMMRQIveSEKARAEYEATTPITTIKPIYR 605
|
|
| Drf_FH1 |
pfam06346 |
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs) ... |
686-748 |
3.17e-06 |
|
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues.
Pssm-ID: 461881 [Multi-domain] Cd Length: 157 Bit Score: 48.71 E-value: 3.17e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568913760 686 PPFVPPPGYIMYTVLPDGSPVPqgvalyaPSPPLPNSSH----PLTPGTVVYGPPPA--GAPIIYGPPP 748
Cdd:pfam06346 1 PPPPPLPGDSSTIPLPPGACIP-------TPPPLPGGGGppppPPLPGSAAIPPPPPlpGGTSIPPPPP 62
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
211-501 |
3.38e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 3.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 211 EKQQENNELRTQLKQLQDDNSLLKKQL----KEFQNHLNHVVDGLIHPEEVAARVDELRKRL-KLGAGEMRIHSPSDVLG 285
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALaelrKELEELEEELEQLRKELEELSRQISALRKDLaRLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 286 KSLADLQKQFSEILARSQWEKEEAQVRErklhEEMALQQEKLANGQEEFRQACERALEAR------------IKFDKRQH 353
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAE----AEIEELEAQIEQLKEELKALREALDELRaeltllneeaanLRERLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 354 NARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAA 433
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 434 SDKLAAaELTIAKDQLKSLHgtvVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLRER 501
Cdd:TIGR02168 910 RSELRR-ELEELREKLAQLE---LRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
23-540 |
3.90e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 3.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 23 ESRLDEILCRIAKETEEIKDLEQQLTDGQIAANEALKKDLEGvisglQEYLGTIKGQATQAQNECRKLQDEKETLLQRLT 102
Cdd:PTZ00121 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA-----KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 103 EVQQEKEELELIAMD----------AENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQ 172
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEkkkadeakkkAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 173 ELEKLLR-RTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHV---- 247
Cdd:PTZ00121 1455 EAKKAEEaKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeak 1534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 248 -VDGLIHPEEVAaRVDELRKRLKL-------GAGEMRIHSPSDVLGKSLADLQKQFSE----ILARSQWEKEEAQVRERK 315
Cdd:PTZ00121 1535 kADEAKKAEEKK-KADELKKAEELkkaeekkKAEEAKKAEEDKNMALRKAEEAKKAEEarieEVMKLYEEEKKMKAEEAK 1613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 316 LHEEMALQQEKLANGQEEfRQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERI 395
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAEEE-KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 396 LAQLQELEKKKKREDARSQEQFLGLDEELK---SLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEAER 472
Cdd:PTZ00121 1693 ALKKEAEEAKKAEELKKKEAEEKKKAEELKkaeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 473 FSREAMQAAKDLSRAEAEIELLqhllrEREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEI 540
Cdd:PTZ00121 1773 IRKEKEAVIEEELDEEDEKRRM-----EVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEV 1835
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
25-544 |
3.92e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 3.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 25 RLDEILCRIAKETEEIKDLEQQLTDGQ-IAANEALKKDLEGVISGLQEY-----LGTIKGQATQAQNECRKLQDEKETLL 98
Cdd:COG4913 236 DLERAHEALEDAREQIELLEPIRELAErYAAARERLAELEYLRAALRLWfaqrrLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 99 QRLTEVQQEKEELELIAMDAenmrkELAELESALQEQHEVNASLQQAQGDLSAYETELEtQLKLKDAETsqlKQELEKLL 178
Cdd:COG4913 316 ARLDALREELDELEAQIRGN-----GGDRLEQLEREIERLERELEERERRRARLEALLA-ALGLPLPAS---AEEFAALR 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 179 RRTQLeqsvLQTELEKERESLRDALGKAQSSEEKQQEN-NELRTQLKQLQDDNSLLKKQLKEFQNHLNHV---------- 247
Cdd:COG4913 387 AEAAA----LLEALEEELEALEEALAEAEAALRDLRRElRELEAEIASLERRKSNIPARLLALRDALAEAlgldeaelpf 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 248 -----------------VDGLIHP------------EEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADlqkqfsEI 298
Cdd:COG4913 463 vgelievrpeeerwrgaIERVLGGfaltllvppehyAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPD------SL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 299 LARSQWEKEEAQVR-ERKLHEEMALQQeklANGQEEFRQAcERAL--EARIKFDKRQHNARIQQLENEIHYLQENlkSME 375
Cdd:COG4913 537 AGKLDFKPHPFRAWlEAELGRRFDYVC---VDSPEELRRH-PRAItrAGQVKGNGTRHEKDDRRRIRSRYVLGFD--NRA 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 376 KIQGLTDlQLQEADEEKERILAQLQELEKKKKREDARSQ--EQFLGLDEELKSLKKAVAASDKLAA--AELTIAKDQLKS 451
Cdd:COG4913 611 KLAALEA-ELAELEEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVASAEREIAELEAelERLDASSDDLAA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 452 LHGTVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEME------NADLGAKGANSQLLE 525
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRalleerFAAALGDAVERELRE 769
|
570 580
....*....|....*....|....
gi 568913760 526 -----IEALNEAMAKQRAEITRLR 544
Cdd:COG4913 770 nleerIDALRARLNRAEEELERAM 793
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1194-1524 |
5.81e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.28 E-value: 5.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1194 QQATQQQRRELERQRQLlerdrRETERVRaesqalqscveclskekedlqgQCESWEKKSSHAQRVLAATEESNKMEqsn 1273
Cdd:pfam17380 302 RQEKEEKAREVERRRKL-----EEAEKAR----------------------QAEMDRQAAIYAEQERMAMERERELE--- 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1274 lgKLELSVRKlrQELEQLSQDKLALH-SEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQT 1352
Cdd:pfam17380 352 --RIRQEERK--RELERIRQEEIAMEiSRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1353 QLQEDISKWMARLEScQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAgkvtlEQQQRQLEKEL 1432
Cdd:pfam17380 428 EQEEARQREVRRLEE-ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE-----EQRRKILEKEL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1433 TDQKSRL-----KQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGEllalQKEADDMRADFSL 1507
Cdd:pfam17380 502 EERKQAMieeerKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEE----RSRLEAMEREREM 577
|
330
....*....|....*..
gi 568913760 1508 LRNQFLTERKKAEKQVA 1524
Cdd:pfam17380 578 MRQIVESEKARAEYEAT 594
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1421-1642 |
6.68e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 6.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1421 LEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLqeeERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADD 1500
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL---ERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1501 MRADFS-LLRNQFLTERKKAEKQVAGLKEALKIQRSQ--LEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELS 1577
Cdd:COG4942 102 QKEELAeLLRALYRLGRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 1578 QMQQEYLELKKQVANQKDLERRqmevSDAMRTLKSEVKDEIRTSLRNLNQFLPELPADLASILER 1642
Cdd:COG4942 182 ELEEERAALEALKAERQKLLAR----LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1268-1650 |
7.20e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 7.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1268 KMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNEL 1347
Cdd:TIGR04523 92 KKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEEL 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1348 LNEQTQLQEDIS------------------------KWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKL 1403
Cdd:TIGR04523 172 ENELNLLEKEKLniqknidkiknkllklelllsnlkKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNT 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1404 QKEREREEQKFEAGKVTLEQQQRQLE------KELTDQKSRLKQLLTDVSAaEGRLGTLQEEERRIEGLERMLSQAKQQL 1477
Cdd:TIGR04523 252 QTQLNQLKDEQNKIKKQLSEKQKELEqnnkkiKELEKQLNQLKSEISDLNN-QKEQDWNKELKSELKNQEKKLEEIQNQI 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1478 SEREQQLMAKSGELLALQKEADDMRADFSLLRNQF---LTERKKAEKQVAGLKEA---LKIQRSQLEKNLLEQKQENSCM 1551
Cdd:TIGR04523 331 SQNNKIISQLNEQISQLKKELTNSESENSEKQRELeekQNEIEKLKKENQSYKQEiknLESQINDLESKIQNQEKLNQQK 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1552 QKEMATIELVAQDNHERARRLMKELSQMQQEYLELKKQVANQKDLERRQMEVSDAMRTLKSEVKDEIRTSLRNLNQFLPE 1631
Cdd:TIGR04523 411 DEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKE 490
|
410
....*....|....*....
gi 568913760 1632 LPADLASILERNENLRELE 1650
Cdd:TIGR04523 491 LKSKEKELKKLNEEKKELE 509
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
951-1331 |
7.65e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 7.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 951 LQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEelqsLQRDIKAAQHSEDHHLQVLRESETLLQAKRA 1030
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1031 ELETLKSqvtsqqqELAVLDSELGHRREELLLLQDSLAQAKADLqealtlGETEVAEKCSHIREVKSLLEELSFQKGELN 1110
Cdd:TIGR02169 752 EIENVKS-------ELKELEARIEELEEDLHKLEEALNDLEARL------SHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1111 VHISEkktqLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKaqvdvleeklel 1190
Cdd:TIGR02169 819 QKLNR----LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES------------ 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1191 enlqqatqqQRRELERQRQLLERDRRETERvraESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKME 1270
Cdd:TIGR02169 883 ---------RLGDLKKERDELEAQLRELER---KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568913760 1271 QSnLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLD 1331
Cdd:TIGR02169 951 LS-LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIE 1010
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1253-1483 |
1.10e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1253 SSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDL 1332
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1333 AKQDLIHTTKCQNELlnEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIREsklrldqqemmFQKLQKEREREEQ 1412
Cdd:COG3883 91 RARALYRSGGSVSYL--DVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAE-----------LEAKKAELEAKLA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568913760 1413 KFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQ 1483
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAA 228
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
893-1087 |
1.84e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 893 AEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKE- 971
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 972 -------------INKVVAAKD-ADF-------QCLNEKKEKLTEELQSLQRDIKAAQHSedhhlqvLRESETLLQAKRA 1030
Cdd:COG3883 92 aralyrsggsvsyLDVLLGSESfSDFldrlsalSKIADADADLLEELKADKAELEAKKAE-------LEAKLAELEALKA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568913760 1031 ELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAE 1087
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1278-1499 |
1.91e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1278 ELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLihttkcqNELLNEQTQLQED 1357
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEI-------AEAEAEIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1358 ISKWMARLESCQKETETKEQ--QVQQLQDEIRESKLR---LDQQEMMFQKLQKEREREEQKfeagKVTLEQQQRQLEKEL 1432
Cdd:COG3883 88 LGERARALYRSGGSVSYLDVllGSESFSDFLDRLSALskiADADADLLEELKADKAELEAK----KAELEAKLAELEALK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568913760 1433 TDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEAD 1499
Cdd:COG3883 164 AELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
38-312 |
1.94e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 38 EEIKDLEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLT-----EVQQEKEELE 112
Cdd:TIGR02169 218 KEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeeEQLRVKEKIG 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 113 LIAMDAENMRKELAELESALQ----EQHEVNASLQQAQGDLSAYETELETQLKLKDA---ETSQLKQELEKLLRRTQleq 185
Cdd:TIGR02169 298 ELEAEIASLERSIAEKERELEdaeeRLAKLEAEIDKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELE--- 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 186 svlqtELEKERESLRDALGKAQSSEEK-QQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLihpEEVAARVDEL 264
Cdd:TIGR02169 375 -----EVDKEFAETRDELKDYREKLEKlKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKI---NELEEEKEDK 446
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 265 RKRLKlgAGEMRIHSPSDVLGK----------SLADLQKQFSEilARSQWEKEEAQVR 312
Cdd:TIGR02169 447 ALEIK--KQEWKLEQLAADLSKyeqelydlkeEYDRVEKELSK--LQRELAEAEAQAR 500
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1206-1617 |
1.95e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1206 RQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQsnlgkLELSVRKLR 1285
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA-----LEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1286 QELEQLSQDklalHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQ-NELLNEQTQLQEDISKWMAR 1364
Cdd:COG4717 146 ERLEELEER----LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEElEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1365 LESCQKETETKEQQVQQLQDEIRESKLRLDQ------------------------------------QEMMFQKLQKERE 1408
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLliaaallallglggsllsliltiagvlflvlgllalLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1409 REEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQakQQLSEREQQLMAKS 1488
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL--EELEQEIAALLAEA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1489 G--------ELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGL-KEALKIQRSQLEKNLLEQKQENSCMQKEMATIE 1559
Cdd:COG4717 380 GvedeeelrAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdEEELEEELEELEEELEELEEELEELREELAELE 459
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 1560 lvaqdNHERARRLMKELSQMQQEYLELKKQVANQKDLERRQMEVSDAMRTLKSEVKDE 1617
Cdd:COG4717 460 -----AELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
771-1474 |
2.13e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.57 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 771 LENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELeveelhRTIERHQQRKDFIDGHVEN 850
Cdd:COG3096 356 LEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQT------RAIQYQQAVQALEKARALC 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 851 LMTELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTkEKTKSAVEKFT--DAKRNLLQTESDAE 928
Cdd:COG3096 430 GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELV-CKIAGEVERSQawQTARELLRRYRSQQ 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 929 ALEKRAQETALNLVKAEQQLRLLQ-----------------ADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKE 991
Cdd:COG3096 509 ALAQRLQQLRAQLAELEQRLRQQQnaerlleefcqrigqqlDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLE 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 992 KLTEELQSLqRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAK 1071
Cdd:COG3096 589 QLRARIKEL-AARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIERLSQPG 667
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1072 -ADLQEALTLGETEVAEKCSHIREVKSLLE--ELSFQKGELNVHI-----SEKKTQLA----------LIQQE------- 1126
Cdd:COG3096 668 gAEDPRLLALAERLGGVLLSEIYDDVTLEDapYFSALYGPARHAIvvpdlSAVKEQLAgledcpedlyLIEGDpdsfdds 747
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1127 -MEKEEKNLQVVLQ----QL--SRHKTE--LKNVADILQLETselqgLKLQHDQKVVELEKAQVDVLEEKLELENLQQ-- 1195
Cdd:COG3096 748 vFDAEELEDAVVVKlsdrQWrySRFPEVplFGRAAREKRLEE-----LRAERDELAEQYAKASFDVQKLQRLHQAFSQfv 822
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1196 -----------------ATQQQRRELERQrqlLERDRRETERVRAESQALQSCVECLSKekedLQGQCESWEKKsSHAQR 1258
Cdd:COG3096 823 gghlavafapdpeaelaALRQRRSELERE---LAQHRAQEQQLRQQLDQLKEQLQLLNK----LLPQANLLADE-TLADR 894
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1259 VLAATEESNKMEQS---------NLGKLELSVRKLR---QELEQLSQDKLALHSEVAEVQQQLQGKQEAINSL------- 1319
Cdd:COG3096 895 LEELREELDAAQEAqafiqqhgkALAQLEPLVAVLQsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRphfsyed 974
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1320 -QEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQem 1398
Cdd:COG3096 975 aVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAE-- 1052
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 1399 MFQKLQKEREREEQKFeagkVTLEQQQRQLEKELTDQKSRLKQLltdvsaaEGRLGtlqEEERRIEGLERMLSQAK 1474
Cdd:COG3096 1053 AEERARIRRDELHEEL----SQNRSRRSQLEKQLTRCEAEMDSL-------QKRLR---KAERDYKQEREQVVQAK 1114
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
9-310 |
2.21e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 9 EQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTD-GQIAANEALKKDLEGVISGLQEyLGTIKGQATQAQNEC 87
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlQRLAEYSWDEIDVASAEREIAE-LEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 88 RKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAqgdlsAYETELETQLK--LKDA 165
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL-----ELRALLEERFAaaLGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 166 ETSQLKQELEKLLRRTQLEQSVLQTELEKERES-LRDALGKAQSSEEKQQENNELRTQLKQLQDDN---------SLLKK 235
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEELERAMRAfNREWPAETADLDADLESLPEYLALLDRLEEDGlpeyeerfkELLNE 842
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568913760 236 QLKEFQNHLNHVVDGLIhpEEVAARVDELR---KRLKLGAGE-MRIHsPSDVLGKSLADLQKQFSEILARSQWEKEEAQ 310
Cdd:COG4913 843 NSIEFVADLLSKLRRAI--REIKERIDPLNdslKRIPFGPGRyLRLE-ARPRPDPEVREFRQELRAVTSGASLFDEELS 918
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
21-412 |
2.32e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 21 QLESRLDEILCRIAKETEEIKDlEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQR 100
Cdd:TIGR00606 688 QTEAELQEFISDLQSKLRLAPD-KLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 101 LTE-------VQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAET-SQLKQ 172
Cdd:TIGR00606 767 IEEqetllgtIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTvVSKIE 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 173 ELEKLLRRTQLEQSVLQT---ELEKERESLRDALGKAQS----SEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLN 245
Cdd:TIGR00606 847 LNRKLIQDQQEQIQHLKSktnELKSEKLQIGTNLQRRQQfeeqLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 246 HVVDGLIHPEEVAA-RVDELRKRLKLGAGEMRihSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQ 324
Cdd:TIGR00606 927 ELISSKETSNKKAQdKVNDIKEKVKNIHGYMK--DIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMR 1004
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 325 EKLANGQEEFR----QACERALEARIK--------FDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEK 392
Cdd:TIGR00606 1005 QDIDTQKIQERwlqdNLTLRKRENELKeveeelkqHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEI 1084
|
410 420
....*....|....*....|
gi 568913760 393 ERILAQLQELEKKKKREDAR 412
Cdd:TIGR00606 1085 KHFKKELREPQFRDAEEKYR 1104
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
77-513 |
2.44e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 77 KGQATQAQNECRKLQDEKETLLQRLTEVQQEKEEL---ELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYE 153
Cdd:PTZ00121 1195 KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVkkaEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA 1274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 154 TELETQLKLKDAETSQLKQELEKLLRRTQLEqsvlqtELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLL 233
Cdd:PTZ00121 1275 EEARKADELKKAEEKKKADEAKKAEEKKKAD------EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 234 KKQLKEFQNHLNHVVD----GLIHPEEVAARVDELRKRlklgAGEMRihsPSDVLGKSLADLQKQFSEIlarSQWEKEEA 309
Cdd:PTZ00121 1349 KAEAEAAADEAEAAEEkaeaAEKKKEEAKKKADAAKKK----AEEKK---KADEAKKKAEEDKKKADEL---KKAAAAKK 1418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 310 QVRERKLHEEMALQQEKLANGQEEFRqaceRALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQlQEAD 389
Cdd:PTZ00121 1419 KADEAKKKAEEKKKADEAKKKAEEAK----KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK-KKAE 1493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 390 EEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAasDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQE 469
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA--DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKK 1571
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 568913760 470 AERFSREAMQAAKDLSRAE-AEIELLQHLLREREGQFRDEMENAD 513
Cdd:PTZ00121 1572 AEEDKNMALRKAEEAKKAEeARIEEVMKLYEEEKKMKAEEAKKAE 1616
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1123-1585 |
4.65e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 4.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1123 IQQEMEKEEKNLQVvLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDvleeklELENLQQATQQQRR 1202
Cdd:COG4913 240 AHEALEDAREQIEL-LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELE------ELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1203 ELERQRQLLERDRRETERVRAESQALQscVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLelsVR 1282
Cdd:COG4913 313 RLEARLDALREELDELEAQIRGNGGDR--LEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAL---RA 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1283 KLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQ-------DHLDLAKQDLIHTTK---------CqnE 1346
Cdd:COG4913 388 EAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLErrksnipARLLALRDALAEALGldeaelpfvG--E 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1347 LLneqtQLQEDISKW-MA---------------------------------RLESCQKETETKEQQVQQLQD-------E 1385
Cdd:COG4913 466 LI----EVRPEEERWrGAiervlggfaltllvppehyaaalrwvnrlhlrgRLVYERVRTGLPDPERPRLDPdslagklD 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1386 IRESKLR---------------------LDQQEM-------------MFQKLQKEREREEQKF----EAGKVTLEQQQRQ 1427
Cdd:COG4913 542 FKPHPFRawleaelgrrfdyvcvdspeeLRRHPRaitragqvkgngtRHEKDDRRRIRSRYVLgfdnRAKLAALEAELAE 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1428 LEKELTDQKSRLKQL------LTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQ----------LSEREQQLMAKSGEL 1491
Cdd:COG4913 622 LEEELAEAEERLEALeaeldaLQERREALQRLAEYSWDEIDVASAEREIAELEAElerldassddLAALEEQLEELEAEL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1492 LALQKEADDMRADFSLLRN---QFLTERKKAEKQVAGL-KEALKIQRSQLEKNLLEQKQENScMQKEMATIELVAQDNHE 1567
Cdd:COG4913 702 EELEEELDELKGEIGRLEKeleQAEEELDELQDRLEAAeDLARLELRALLEERFAAALGDAV-ERELRENLEERIDALRA 780
|
570
....*....|....*...
gi 568913760 1568 RARRLMKELSQMQQEYLE 1585
Cdd:COG4913 781 RLNRAEEELERAMRAFNR 798
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1378-1544 |
5.04e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 5.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1378 QVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGT-- 1455
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEA----AKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1456 ----LQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALK 1531
Cdd:COG1579 87 nnkeYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
170
....*....|...
gi 568913760 1532 IQRSQLEKNLLEQ 1544
Cdd:COG1579 167 ELAAKIPPELLAL 179
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
202-440 |
5.43e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 5.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 202 ALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLnhvvdglihpEEVAARVDELRKRLKLGAGEMRihsps 281
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL----------AALERRIAALARRIRALEQELA----- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 282 dVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERA--LEARIKFDK------RQH 353
Cdd:COG4942 80 -ALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLqyLKYLAPARReqaeelRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 354 NARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAA 433
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*..
gi 568913760 434 SDKLAAA 440
Cdd:COG4942 239 AAERTPA 245
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1282-1539 |
8.30e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.32 E-value: 8.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1282 RKLRQELEQLS----QDKLaLHSEVAEVQQQLQGKQEAINSLQEELDStqdhldlakqdlihttkcQNELLNEQTQLQ-E 1356
Cdd:PHA02562 153 RKLVEDLLDISvlseMDKL-NKDKIRELNQQIQTLDMKIDHIQQQIKT------------------YNKNIEEQRKKNgE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1357 DISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKER----------EREEQKFEAGKV------T 1420
Cdd:PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAakikskieqfQKVIKMYEKGGVcptctqQ 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1421 LEQQQRQLEKeLTDQKS----RLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSereqqlmaksgellALQK 1496
Cdd:PHA02562 294 ISEGPDRITK-IKDKLKelqhSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLI--------------TLVD 358
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568913760 1497 EADDMRADFSLLRNQFLTERKKAEKQVAGLKEaLKIQRSQLEK 1539
Cdd:PHA02562 359 KAKKVKAAIEELQAEFVDNAEELAKLQDELDK-IVKTKSELVK 400
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1196-1495 |
9.88e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 9.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1196 ATQQQRRELERQRQLLERDRRETERVRAESQALQscvECLSKEKEDLQGQCESWEKK----SSHAQRVLAATEESNKMEQ 1271
Cdd:COG3096 275 RHANERRELSERALELRRELFGARRQLAEEQYRL---VEMARELEELSARESDLEQDyqaaSDHLNLVQTALRQQEKIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1272 SNLGKLELSVRklrqeLEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLD------LAKQDLIHTTKCQN 1345
Cdd:COG3096 352 YQEDLEELTER-----LEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDvqqtraIQYQQAVQALEKAR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1346 ELLNEQTQLQEDISKWMARLESCQKE-TETKEQQVQQLQDEiRESKLRLDQQEMMFQKLQKERERE-------------- 1410
Cdd:COG3096 427 ALCGLPDLTPENAEDYLAAFRAKEQQaTEEVLELEQKLSVA-DAARRQFEKAYELVCKIAGEVERSqawqtarellrryr 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1411 EQKFEAGKV-TLEQQQRQLEKELTDQKS--RL-----KQLLTDVSAAEGRLGTLQEEERRIEGLE----------RMLSQ 1472
Cdd:COG3096 506 SQQALAQRLqQLRAQLAELEQRLRQQQNaeRLleefcQRIGQQLDAAEELEELLAELEAQLEELEeqaaeaveqrSELRQ 585
|
330 340
....*....|....*....|...
gi 568913760 1473 AKQQLSEREQQLMAKSGELLALQ 1495
Cdd:COG3096 586 QLEQLRARIKELAARAPAWLAAQ 608
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
38-239 |
1.01e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 38 EEIKDLEQQLTDGQIAANEALKKD-LEGVISGLQEYLGTIKGQATQAQNECRK---------LQDEKETLLQRLTEVQQE 107
Cdd:COG3206 148 ELAAAVANALAEAYLEQNLELRREeARKALEFLEEQLPELRKELEEAEAALEEfrqknglvdLSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 108 KEELELIAMDAENMRKEL-AELESALQEQHEVNAS--LQQAQGDLSAYETELETQL---------------KLKDAEtSQ 169
Cdd:COG3206 228 LAEARAELAEAEARLAALrAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSarytpnhpdvialraQIAALR-AQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 170 LKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKE 239
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
771-1411 |
1.09e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 771 LENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIErhqqrkdfidghven 850
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE--------------- 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 851 lmtelEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELactkEKTKSAVEKFTDAKRNLLQTESDAEAL 930
Cdd:PRK03918 225 -----KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI----EELKKEIEELEEKVKELKELKEKAEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 931 EKRAQEtalnLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKvvaakdadfqcLNEKKEKLTEELQSLQRDikaaqhs 1010
Cdd:PRK03918 296 IKLSEF----YEEYLDELREIEKRLSRLEEEINGIEERIKELEE-----------KEERLEELKKKLKELEKR------- 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1011 edhhLQVLRESETLLQ---AKRAELETLKSQVTsqqqelavldselGHRREELLLLQDSLAQAKADLQEALTLGETEVAE 1087
Cdd:PRK03918 354 ----LEELEERHELYEeakAKKEELERLKKRLT-------------GLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1088 KCSHIREVKSLLEELSFQKGELNV---HISE--KKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSEL 1162
Cdd:PRK03918 417 LKKEIKELKKAIEELKKAKGKCPVcgrELTEehRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1163 QGLKLQHDQKVVELEKAQVDVLeeklelenlqqatqqqrrELERQRQLLERDRRETERVRAESQALQSCVEclskEKEDL 1242
Cdd:PRK03918 497 KLKELAEQLKELEEKLKKYNLE------------------ELEKKAEEYEKLKEKLIKLKGEIKSLKKELE----KLEEL 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1243 QGQCESWEKKSSHAQRVLAatEESNKMEQSNLGKLELSVRKLrQELEQLSQDKLALHSevaeVQQQLQGKQEAINSLQEE 1322
Cdd:PRK03918 555 KKKLAELEKKLDELEEELA--ELLKELEELGFESVEELEERL-KELEPFYNEYLELKD----AEKELEREEKELKKLEEE 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1323 LDSTQDHLDLAKQDLIHTTKCQNELLNEQTQ--------LQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLD 1394
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSEeeyeelreEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
650
....*....|....*..
gi 568913760 1395 QQEMMFQKLQKEREREE 1411
Cdd:PRK03918 708 KAKKELEKLEKALERVE 724
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
38-508 |
1.13e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 38 EEIKDLEQQLtdGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKEtLLQRLTEVQQEKEELELIAmd 117
Cdd:COG4717 71 KELKELEEEL--KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAELP-- 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 118 aenmrKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERE 197
Cdd:COG4717 146 -----ERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 198 SLrdalgkaqssEEKQQENNELRTQLKQLQDDNSLlkKQLKEFQNHLNHVVDGLIHPEEVAARVDELRKRLKLGAGEMRI 277
Cdd:COG4717 221 EL----------EELEEELEQLENELEAAALEERL--KEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 278 HSPsdVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQAcERALEARIKFDKRQHNARI 357
Cdd:COG4717 289 LFL--LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRI-EELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 358 QQLENEIHYL--QENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAAsd 435
Cdd:COG4717 366 EELEQEIAALlaEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEE-- 443
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568913760 436 klAAAELTIAKDQLKSLHGtvvRINQ-ERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDE 508
Cdd:COG4717 444 --LEEELEELREELAELEA---ELEQlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1064-1271 |
1.27e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1064 QDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSR 1143
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1144 HKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRA 1223
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568913760 1224 ESQALQSCVECLSKEKEDLQGQCESweKKSSHAQRVLAATEESNKMEQ 1271
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEK--ELAELAAELAELQQEAEELEA 227
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1283-1448 |
1.29e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1283 KLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTtkcqNELLNEQTQLQEDISKwm 1362
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEV----EARIKKYEEQLGNVRN-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1363 AR-LESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQ 1441
Cdd:COG1579 88 NKeYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
....*..
gi 568913760 1442 LLTDVSA 1448
Cdd:COG1579 168 LAAKIPP 174
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1276-1594 |
1.46e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1276 KLELSVRKLRQELEQLSQdKLALH----------SEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQdlihttKCQ- 1344
Cdd:PRK04863 804 TLSFDVQKLQRLHQAFSR-FIGSHlavafeadpeAELRQLNRRRVELERALADHESQEQQQRSQLEQAKE------GLSa 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1345 -NELLNEQTQLQEDisKWMARLESCQKETEtkeqQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQkfeagkvtLEQ 1423
Cdd:PRK04863 877 lNRLLPRLNLLADE--TLADRVEEIREQLD----EAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQ--------LKQ 942
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1424 QQRQLEKELTDQKSRLKqLLTDVSA---------AEGRLG---TLQEEER-RIEGLERMLSQAKQQLSEREQQLMAKSGE 1490
Cdd:PRK04863 943 DYQQAQQTQRDAKQQAF-ALTEVVQrrahfsyedAAEMLAknsDLNEKLRqRLEQAEQERTRAREQLRQAQAQLAQYNQV 1021
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1491 LLALQKEADDMRAdfslLRNQFLTERKKAEKQV-AGLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELvaqdnheRA 1569
Cdd:PRK04863 1022 LASLKSSYDAKRQ----MLQELKQELQDLGVPAdSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEA-------EM 1090
|
330 340
....*....|....*....|....*
gi 568913760 1570 RRLMKELSQMQQEYLELKKQVANQK 1594
Cdd:PRK04863 1091 DNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
4-405 |
1.69e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 4 QKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTD----GQIAANEALKKDLEGVISGLQEYLGTIKGQ 79
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKleklLQLLPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 80 ATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIA-MDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELET 158
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 159 QLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDAL--------------GKAQSSEEKQQENNELRTQLK 224
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLflvlgllallflllAREKASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 225 QLQDDNslLKKQLKEFQNHLNHVVDGLIHPEEVAARVDELRKRLKLGAGEMRIHspsdvlgkslaDLQKQFSEILARSQW 304
Cdd:COG4717 315 ELEEEE--LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE-----------ELEQEIAALLAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 305 EKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQG----- 379
Cdd:COG4717 382 EDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAeleae 461
|
410 420 430
....*....|....*....|....*....|
gi 568913760 380 ----LTDLQLQEADEEKERILAQLQELEKK 405
Cdd:COG4717 462 leqlEEDGELAELLQELEELKAELRELAEE 491
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
874-1034 |
1.74e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 874 LEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQ--ETALNLVKAEQQLRLL 951
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKkyEEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 952 QADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAqhsedhhLQVLRESETLLQAKRAE 1031
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE-------LAELEAELEELEAEREE 167
|
...
gi 568913760 1032 LET 1034
Cdd:COG1579 168 LAA 170
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2-516 |
1.75e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 2 KAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAK-ETEEIKDLEQqltdgQIAANEALKKDLEGVISGLQEYLGTIKGQA 80
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIRGnGGDRLEQLER-----EIERLERELEERERRRARLEALLAALGLPL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 81 TQAQNEcrkLQDEKETLLQRLTEVQQEKEELELIAMDAENmrkELAELESALQEQHEVNASLQQAQGDLSAYE----TEL 156
Cdd:COG4913 376 PASAEE---FAALRAEAAALLEALEEELEALEEALAEAEA---ALRDLRRELRELEAEIASLERRKSNIPARLlalrDAL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 157 ETQLKLKD------AETSQLKQE-------LEKLLR--RTQL--EQSVLQTELEK-ERESLRdalGKAQSSEEKQQENNE 218
Cdd:COG4913 450 AEALGLDEaelpfvGELIEVRPEeerwrgaIERVLGgfALTLlvPPEHYAAALRWvNRLHLR---GRLVYERVRTGLPDP 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 219 LRTQLkqlqDDNSLLKK---QLKEFQNHLNHVvdgLIHPEEVA--ARVDELRK-----------RLKLGAGEM--RIHSP 280
Cdd:COG4913 527 ERPRL----DPDSLAGKldfKPHPFRAWLEAE---LGRRFDYVcvDSPEELRRhpraitragqvKGNGTRHEKddRRRIR 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 281 SD-VLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANgqeefRQACERALEARIkfDKRQHNARIQQ 359
Cdd:COG4913 600 SRyVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREA-----LQRLAEYSWDEI--DVASAEREIAE 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 360 LENEIHYLQEnlksmekiqglTDLQLQEADEEKERILAQLQELEKKKKREDARSQEqflgLDEELKSLKKAV-AASDKLA 438
Cdd:COG4913 673 LEAELERLDA-----------SSDDLAALEEQLEELEAELEELEEELDELKGEIGR----LEKELEQAEEELdELQDRLE 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 439 AAELTIAKDQLKSLhgtvvrinQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDE--MENADLGA 516
Cdd:COG4913 738 AAEDLARLELRALL--------EERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREwpAETADLDA 809
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
979-1503 |
1.79e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.64 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 979 KDADFQCLNEKKEKLTEELQ----SLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELET--------------LKSQVT 1040
Cdd:pfam05483 280 QDENLKELIEKKDHLTKELEdikmSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEElnkakaahsfvvteFEATTC 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1041 SQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLG---ETEVAEKCSHIREVKSLLEElSFQKGELNVHISEKK 1117
Cdd:pfam05483 360 SLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKnnkEVELEELKKILAEDEKLLDE-KKQFEKIAEELKGKE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1118 TQLALIQQEMEKEEKNLQVVLQQL-SRHKTELKNVADI-LQLETSELQGLKLQHDQKVVELEKAQV--DVLEEKLELENL 1193
Cdd:pfam05483 439 QELIFLLQAREKEIHDLEIQLTAIkTSEEHYLKEVEDLkTELEKEKLKNIELTAHCDKLLLENKELtqEASDMTLELKKH 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1194 QQATQQQRRELERQRQLLERDRRETERVRAEsqaLQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSN 1273
Cdd:pfam05483 519 QEDIINCKKQEERMLKQIENLEEKEMNLRDE---LESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENK 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1274 LGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQdhldlakqdlihttkcqnellneqtq 1353
Cdd:pfam05483 596 CNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK-------------------------- 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1354 lqediSKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQemmfQKLQKEREREEQKFEAGKVTL-EQQQRQLEKEL 1432
Cdd:pfam05483 650 -----QKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEA----VKLQKEIDKRCQHKIAEMVALmEKHKHQYDKII 720
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568913760 1433 TDQKSRLKQLLTDVsaaegrlgtlQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRA 1503
Cdd:pfam05483 721 EERDSELGLYKNKE----------QEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTA 781
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
86-474 |
2.03e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 46.28 E-value: 2.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 86 ECRKLQDE----KETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQgdlsayETELETQLK 161
Cdd:pfam07111 74 ELRRLEEEvrllRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGS------QRELEEIQR 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 162 LKDAETSQLKQELEKLLRRTQLEQSvlqtELEKERESLR-DALGKAQSSEEKQQENNELRTQLKQLQDDnslLKKQLKEF 240
Cdd:pfam07111 148 LHQEQLSSLTQAHEEALSSLTSKAE----GLEKSLNSLEtKRAGEAKQLAEAQKEAELLRKQLSKTQEE---LEAQVTLV 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 241 QNHLNHVVDGLihPEEVAARVDELRKrlklgagemrihspsdvlgKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEM 320
Cdd:pfam07111 221 ESLRKYVGEQV--PPEVHSQTWELER-------------------QELLDTMQHLQEDRADLQATVELLQVRVQSLTHML 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 321 ALQQEKLANG-------QEEFRQACER----------ALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDL 383
Cdd:pfam07111 280 ALQEEELTRKiqpsdslEPEFPKKCRSllnrwrekvfALMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQR 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 384 QLQE--ADEEKERILAQLQELEKKKKREDARSQEQFLG-LDEELKSLKKAVAASDklaaaeltiakdqlKSLHGTVVRIN 460
Cdd:pfam07111 360 ALQDkaAEVEVERMSAKGLQMELSRAQEARRRQQQQTAsAEEQLKFVVNAMSSTQ--------------IWLETTMTRVE 425
|
410
....*....|....
gi 568913760 461 QERAEELQEAERFS 474
Cdd:pfam07111 426 QAVARIPSLSNRLS 439
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
39-553 |
2.06e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 39 EIKDLEQQLTDGQIAANEAlKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQE--KEELELIAM 116
Cdd:pfam15921 318 QLSDLESTVSQLRSELREA-KRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADlhKREKELSLE 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 117 DAENMRKELAELESALQEQH------EVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEK-------------L 177
Cdd:pfam15921 397 KEQNKRLWDRDTGNSITIDHlrreldDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKvssltaqlestkeM 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 178 LRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHV---VDGL-IH 253
Cdd:pfam15921 477 LRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVqteCEALkLQ 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 254 PEEVAARVDELRKRLK----------LGAGEMRIHSPSdvLGKSLADLQKQFSEIlaRSQWEKEEAQVRERKLH-EEMAL 322
Cdd:pfam15921 557 MAEKDKVIEILRQQIEnmtqlvgqhgRTAGAMQVEKAQ--LEKEINDRRLELQEF--KILKDKKDAKIRELEARvSDLEL 632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 323 QQEKLANGQEEFRQACERALEARIKFDKRQHNAR--IQQLENEIHYLQENLKS----MEKIQGLTDLQLQEADEEKERIL 396
Cdd:pfam15921 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRneLNSLSEDYEVLKRNFRNkseeMETTTNKLKMQLKSAQSELEQTR 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 397 AQLQELEKkkkrEDARSQEQFLGLDEELKSLKKAVAAsdklaaaeltiAKDQLKSLHGTVVRINQERAEELQEAERFSRE 476
Cdd:pfam15921 713 NTLKSMEG----SDGHAMKVAMGMQKQITAKRGQIDA-----------LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQE 777
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 477 AMQAAKDLSRAEAEIEllqhLLREREGQFRDEMENADLGAKGANSQLLEIEalnEAMAKQRAEITRLR-----DVLNLTG 551
Cdd:pfam15921 778 LSTVATEKNKMAGELE----VLRSQERRLKEKVANMEVALDKASLQFAECQ---DIIQRQEQESVRLKlqhtlDVKELQG 850
|
..
gi 568913760 552 AG 553
Cdd:pfam15921 851 PG 852
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
777-1171 |
2.20e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 777 RLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDL-------LQEKKELELEVEELHRTIERHQQRKDFIDGHVE 849
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLeeraeelREEAAELESELEEAREAVEDRREEIEELEEEIE 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 850 NLMTELE------------IEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAE----------AENELACTKEKTK 907
Cdd:PRK02224 395 ELRERFGdapvdlgnaedfLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvEGSPHVETIEEDR 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 908 SAVEKFTDAkrnLLQTESDAEALEKRAqETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEinkvvaaKDADFQCLN 987
Cdd:PRK02224 475 ERVEELEAE---LEDLEEEVEEVEERL-ERAEDLVEAEDRIERLEERREDLEELIAERRETIEE-------KRERAEELR 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 988 EKKEKLTEELQSlQRDIKAAQHSE-DHHLQVLRESETLLQAKRAELETLKsQVTSQQQELAVLDSELGHRREELlllqds 1066
Cdd:PRK02224 544 ERAAELEAEAEE-KREAAAEAEEEaEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKR------ 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1067 laqakADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGElnvhisEKKTQLALIQQEMEKEeknlqvvLQQLSRHKT 1146
Cdd:PRK02224 616 -----EALAELNDERRERLAEKRERKRELEAEFDEARIEEAR------EDKERAEEYLEQVEEK-------LDELREERD 677
|
410 420
....*....|....*....|....*
gi 568913760 1147 ELKNVADILQLETSELQGLKLQHDQ 1171
Cdd:PRK02224 678 DLQAEIGAVENELEELEELRERREA 702
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
987-1241 |
2.46e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 987 NEKKEKLTEELQSLQRDIKAAQhsedhhlQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDS 1066
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELE-------KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1067 LAQAKADLQEaltlgetevaekcshirevksLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVvLQQLSRhkt 1146
Cdd:COG4942 92 IAELRAELEA---------------------QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQY-LKYLAP--- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1147 ELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQrqlLERDRRETERVRAESQ 1226
Cdd:COG4942 147 ARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKE---LAELAAELAELQQEAE 223
|
250
....*....|....*
gi 568913760 1227 ALQSCVECLSKEKED 1241
Cdd:COG4942 224 ELEALIARLEAEAAA 238
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
119-409 |
2.49e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 119 ENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELetQLKLKDAETSQLKQELEklLRRTQLEQSVLQTELEKERES 198
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKA--SREETFARTALKNARLD--LRRLFDEKQSEKDKKNKALAE 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 199 LRDALGKAQSSEEKQQENNELRTQ--LKQLQDDNSLLKKQLKEFQNHLNHVVDGLIH--PEEVAARVDELRKRLKLGAGE 274
Cdd:pfam12128 676 RKDSANERLNSLEAQLKQLDKKHQawLEEQKEQKREARTEKQAYWQVVEGALDAQLAllKAAIAARRSGAKAELKALETW 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 275 M-RIHSPSDVLGKSLADLQKQFSEILAR-SQWEKEEAQVRE--RKLHEEMALQQEKLANGQEEFRQACER------ALEA 344
Cdd:pfam12128 756 YkRDLASLGVDPDVIAKLKREIRTLERKiERIAVRRQEVLRyfDWYQETWLQRRPRLATQLSNIERAISElqqqlaRLIA 835
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 345 RIKFDKRQHNARIQQLENEIHYLQENLKSME-KIQGLTDLQL----QEADEEKERILAQLQELEKKKKRE 409
Cdd:pfam12128 836 DTKLRRAKLEMERKASEKQQVRLSENLRGLRcEMSKLATLKEdansEQAQGSIGERLAQLEDLKLKRDYL 905
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1275-1461 |
2.61e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1275 GKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHttkcqNELLNEQTQL 1354
Cdd:COG4717 63 GRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL-----LPLYQELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1355 QEDISKWMARLESCQ---KETETKEQQVQQLQDEIRESKLRLDQQEmmfQKLQKEREREEQKFEAGKVTLEQQQRQLEKE 1431
Cdd:COG4717 138 EAELAELPERLEELEerlEELRELEEELEELEAELAELQEELEELL---EQLSLATEEELQDLAEELEELQQRLAELEEE 214
|
170 180 190
....*....|....*....|....*....|
gi 568913760 1432 LTDQKSRLKQLLTDVSAAEGRLGTLQEEER 1461
Cdd:COG4717 215 LEEAQEELEELEEELEQLENELEAAALEER 244
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1405-1536 |
2.80e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.62 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1405 KEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLgtlQEEERRIEGLERMLSQAKQqlseREQQL 1484
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAEL---EEKDERIERLERELSEARS----EERRE 460
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568913760 1485 MAKSGELLALQKEADDMRADFSLLRNqfltERKKAEKQVAGLKEALKIQRSQ 1536
Cdd:COG2433 461 IRKDREISRLDREIERLERELEEERE----RIEELKRKLERLKELWKLEHSG 508
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
21-246 |
3.90e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.29 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 21 QLESRLDEILCRIAKETEE---IKDLEQQLTdgQIAANEALKKDLEgvisglqeylgTIKGQATQAQNECRKLQDEketl 97
Cdd:PRK11281 40 DVQAQLDALNKQKLLEAEDklvQQDLEQTLA--LLDKIDRQKEETE-----------QLKQQLAQAPAKLRQAQAE---- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 98 LQRLTEVQQEKEELELIAMdaenmrkELAELESALQEqheVNASLQQAQGDLSAYETEL---ETQLKLKDAETS---QLK 171
Cdd:PRK11281 103 LEALKDDNDEETRETLSTL-------SLRQLESRLAQ---TLDQLQNAQNDLAEYNSQLvslQTQPERAQAALYansQRL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 172 QELEKLLRRTQLEQSVLqtelekeRESLRDALGKAQSSEEKQqenNELRTQL----KQLQDdnsLLKKQ---LKEFQNHL 244
Cdd:PRK11281 173 QQIRNLLKGGKVGGKAL-------RPSQRVLLQAEQALLNAQ---NDLQRKSlegnTQLQD---LLQKQrdyLTARIQRL 239
|
..
gi 568913760 245 NH 246
Cdd:PRK11281 240 EH 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1060-1294 |
4.07e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1060 LLLLQDSLAQA--KADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVV 1137
Cdd:COG4942 9 LLLALAAAAQAdaAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1138 LQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRE 1217
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568913760 1218 TERVRAESQALqscveclskeKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQD 1294
Cdd:COG4942 169 LEAERAELEAL----------LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
125-376 |
4.07e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 125 LAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQeLEKLLRRTQLEQSVLQTELEKERESLRDAlg 204
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAALARRIRALEQELAALEAELAEL-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 205 kaqsseekQQENNELRTQLKQLQDDnslLKKQLKE-FQNHLNHVVDGLIHPEEVAarvdELRKRLKLgageMRIHSPSDv 283
Cdd:COG4942 89 --------EKEIAELRAELEAQKEE---LAELLRAlYRLGRQPPLALLLSPEDFL----DAVRRLQY----LKYLAPAR- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 284 lgKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEfrqacERALEARIKFDKRQHNARIQQLENE 363
Cdd:COG4942 149 --REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAE-----RQKLLARLEKELAELAAELAELQQE 221
|
250
....*....|...
gi 568913760 364 IHYLQENLKSMEK 376
Cdd:COG4942 222 AEELEALIARLEA 234
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1-222 |
4.30e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1 MKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQiAANEALKKDLEGVISGLQE------YLG 74
Cdd:COG3883 28 LQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE-AEIEERREELGERARALYRsggsvsYLD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 75 TIKGQATQAQ--NECRKLQDEKETLLQRLTEVQQEKEELELIAMDAEnmrKELAELESALQEQHEVNASLQQAQGDLSAY 152
Cdd:COG3883 107 VLLGSESFSDflDRLSALSKIADADADLLEELKADKAELEAKKAELE---AKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 153 ETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQ 222
Cdd:COG3883 184 LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAG 253
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1271-1578 |
5.11e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.51 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1271 QSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNE 1350
Cdd:COG4372 51 REELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQ 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1351 QTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEK 1430
Cdd:COG4372 131 RKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIE 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1431 ELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRN 1510
Cdd:COG4372 211 SLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEE 290
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 1511 QFLTERKKAEKQVAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELSQ 1578
Cdd:COG4372 291 AALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLEL 358
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
988-1433 |
5.25e-04 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 45.18 E-value: 5.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 988 EKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESetlLQAKRAELETLKSQVTSQQQELAVLDselghRREELLLLQDSL 1067
Cdd:PRK10246 191 EQHKSARTELEKLQAQASGVALLTPEQVQSLTAS---LQVLTDEEKQLLTAQQQQQQSLNWLT-----RLDELQQEASRR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1068 AQAKADLQEALT-----LGETEVAEKCSHIR-------EVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQ 1135
Cdd:PRK10246 263 QQALQQALAAEEkaqpqLAALSLAQPARQLRphweriqEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1136 VVLQQLSRHKTElknvADILQLETSELQGLKLQHDQ--------------------KVVELEKAQVDVLEEKLELENLQQ 1195
Cdd:PRK10246 343 AQQQSLNTWLAE----HDRFRQWNNELAGWRAQFSQqtsdreqlrqwqqqlthaeqKLNALPAITLTLTADEVAAALAQH 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1196 ATQQQRRE----LERQRQLLERDRRETERVRAESQALQSCVECLSKEKE-----------DLQGQCESWEK-KSSHAQRV 1259
Cdd:PRK10246 419 AEQRPLRQrlvaLHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRqrykektqqlaDVKTICEQEARiKDLEAQRA 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1260 ---------LAATEESNKMEQSNlgKLELSVRKLR-----QELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEElds 1325
Cdd:PRK10246 499 qlqagqpcpLCGSTSHPAVEAYQ--ALEPGVNQSRldaleKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQE--- 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1326 tQDHLDLAKQDLIHTtkcqnelLNEQTQLQEDISKWMarlescqKETETKEQQVQQLqdeiresklrldQQEMMFQKLQK 1405
Cdd:PRK10246 574 -EQALTQQWQAVCAS-------LNITLQPQDDIQPWL-------DAQEEHERQLRLL------------SQRHELQGQIA 626
|
490 500
....*....|....*....|....*...
gi 568913760 1406 EREREEQKFEAgkvTLEQQQRQLEKELT 1433
Cdd:PRK10246 627 AHNQQIIQYQQ---QIEQRQQQLLTALA 651
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1265-1571 |
5.53e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 44.13 E-value: 5.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1265 ESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDlakqdlihttkcq 1344
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRD------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1345 nELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKlrldqqemmfqKLQKEREREEQKFEAGKVTLEQq 1424
Cdd:COG1340 68 -ELNEKVKELKEERDELNEKLNELREELDELRKELAELNKAGGSID-----------KLRKEIERLEWRQQTEVLSPEE- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1425 qrqlEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRAD 1504
Cdd:COG1340 135 ----EKELVEKIKELEKELEKAKKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKE 210
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 1505 FSLLRNQFLTERKKAEKQVAGLKEAL-KIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARR 1571
Cdd:COG1340 211 ADELHKEIVEAQEKADELHEEIIELQkELRELRKELKKLRKKQRALKREKEKEELEEKAEEIFEKLKK 278
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
163-502 |
6.73e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 6.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 163 KDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQN 242
Cdd:PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 243 HLNHVVDGLIHPEEVAARVDELRKR----LKLGAGEMRIHSPSDVLGKSLADLQKQFSEILAR-SQWEKEEAQVRE-RKL 316
Cdd:PRK03918 267 RIEELKKEIEELEEKVKELKELKEKaeeyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERiKELEEKEERLEElKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 317 HEEMALQQEKLANGQEEFRQACERALEAR---------------------------IKFDKRQHNARIQQLENEIHYLQE 369
Cdd:PRK03918 347 LKELEKRLEELEERHELYEEAKAKKEELErlkkrltgltpeklekeleelekakeeIEEEISKITARIGELKKEIKELKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 370 NLKSMEKIQGLTDLQLQEADEE-----KERILAQLQELEKKKKREDARSQEqflgLDEELKSLKKAVAASDKLAAAELTI 444
Cdd:PRK03918 427 AIEELKKAKGKCPVCGRELTEEhrkelLEEYTAELKRIEKELKEIEEKERK----LRKELRELEKVLKKESELIKLKELA 502
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 568913760 445 akDQLKSLHGTVVRINQERAEE-LQEAERFSREAMQAAKDLSRAEAEIELLQHLLRERE 502
Cdd:PRK03918 503 --EQLKELEEKLKKYNLEELEKkAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
965-1579 |
6.74e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 6.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 965 QEEILKEINKVVAAKDADfqcLNEKKEKLTEELQSLQRDIKAAQHsedhhlQVLRESETLLQAKRAELETLKSQvtsqQQ 1044
Cdd:pfam12128 281 RQETSAELNQLLRTLDDQ---WKEKRDELNGELSAADAAVAKDRS------ELEALEDQHGAFLDADIETAAAD----QE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1045 ELAVLDSELGHRREELLLLQDSlaqaKADLQEALTLGETEVAEKCShiREVKSLLEELSFQKgelnvhiSEKKTQLALIQ 1124
Cdd:pfam12128 348 QLPSWQSELENLEERLKALTGK----HQDVTAKYNRRRSKIKEQNN--RDIAGIKDKLAKIR-------EARDRQLAVAE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1125 QEMEKEEKNLQvvlQQLSRHKTELKNVADILQLETSELQG----------LKLQHDQKVVELEKAQVDVLEEKLELENLQ 1194
Cdd:pfam12128 415 DDLQALESELR---EQLEAGKLEFNEEEYRLKSRLGELKLrlnqatatpeLLLQLENFDERIERAREEQEAANAEVERLQ 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1195 QATQQQRRELERQRQLLERDRRETERVRAESQALQ--------SCVECLSKEKEDLQgqcESWEKKSSHAQrvLAATEES 1266
Cdd:pfam12128 492 SELRQARKRRDQASEALRQASRRLEERQSALDELElqlfpqagTLLHFLRKEAPDWE---QSIGKVISPEL--LHRTDLD 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1267 NKMEQSNLGKlELSVRKLRQELEQLSqdklalHSEVAEVQQQLQGKqeaINSLQEELDSTQDhldlakqdlihttkcqne 1346
Cdd:pfam12128 567 PEVWDGSVGG-ELNLYGVKLDLKRID------VPEWAASEEELRER---LDKAEEALQSARE------------------ 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1347 llnEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIResklRL-DQQEMMFQKLQKEREREEQKFEAGKVTLEQQQ 1425
Cdd:pfam12128 619 ---KQAAAEEQLVQANGELEKASREETFARTALKNARLDLR----RLfDEKQSEKDKKNKALAERKDSANERLNSLEAQL 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1426 RQLEKEL---------------TDQKSRLKQLLTDVSAAEGRLGtlQEEERRIEGLERMLSQAKQQ-------------- 1476
Cdd:pfam12128 692 KQLDKKHqawleeqkeqkrearTEKQAYWQVVEGALDAQLALLK--AAIAARRSGAKAELKALETWykrdlaslgvdpdv 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1477 LSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMA 1556
Cdd:pfam12128 770 IAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERK 849
|
650 660
....*....|....*....|...
gi 568913760 1557 TIELVAQDNHERARRLMKELSQM 1579
Cdd:pfam12128 850 ASEKQQVRLSENLRGLRCEMSKL 872
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1124-1459 |
7.59e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.12 E-value: 7.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1124 QQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRE 1203
Cdd:pfam07888 54 NRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1204 LERQRQLLERD----RRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLEL 1279
Cdd:pfam07888 134 LEEDIKTLTQRvlerETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQD 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1280 SVRKLRQELEQLSQDKL---ALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLiHTTKCQNELLNEQ----- 1351
Cdd:pfam07888 214 TITTLTQKLTTAHRKEAeneALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAEL-HQARLQAAQLTLQladas 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1352 TQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREE-----QKFEAGKVTLEQQ-- 1424
Cdd:pfam07888 293 LALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKdcnrvQLSESRRELQELKas 372
|
330 340 350
....*....|....*....|....*....|....*
gi 568913760 1425 QRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEE 1459
Cdd:pfam07888 373 LRVAQKEKEQLQAEKQELLEYIRQLEQRLETVADA 407
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1277-1483 |
9.46e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 9.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1277 LELSVRKLRQELEQLSQdklALHSEVAEVQQQLQGKQEAINSLQEELDStqdhLDLAKQDLIHTTKcQNELLNEQTQLQE 1356
Cdd:COG3206 162 LEQNLELRREEARKALE---FLEEQLPELRKELEEAEAALEEFRQKNGL----VDLSEEAKLLLQQ-LSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1357 DISKWMARLESCQKETETKEQQ---------VQQLQDEIRESKLRLDQQEMMF--------------QKLQKEREREEQK 1413
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDAlpellqspvIQQLRAQLAELEAELAELSARYtpnhpdvialraqiAALRAQLQQEAQR 313
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1414 FEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQ 1483
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEAL 383
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
771-1599 |
9.85e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 9.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 771 LENEVSRLEDIMQHLKSKQREErrqkastqhsEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFIDGHVEn 850
Cdd:pfam01576 66 LAARKQELEEILHELESRLEEE----------EERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIK- 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 851 lmtelEIEKSLKHHEDIVDEIECLEKTLLKRRSELreADRLLAEAENELACTKEKTKSAVeKFTDAKRNLLQTESDAEAL 930
Cdd:pfam01576 135 -----KLEEDILLLEDQNSKLSKERKLLEERISEF--TSNLAEEEEKAKSLSKLKNKHEA-MISDLEERLKKEEKGRQEL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 931 EKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHS 1010
Cdd:pfam01576 207 EKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAA 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1011 EDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCS 1090
Cdd:pfam01576 287 RNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1091 HIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLS-------RHKTELKNVADILQLETSELQ 1163
Cdd:pfam01576 367 QAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQarlseseRQRAELAEKLSKLQSELESVS 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1164 GLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQR-------RELERQR----QLLERDRRETERVRAESQALQSCV 1232
Cdd:pfam01576 447 SLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKlnlstrlRQLEDERnslqEQLEEEEEAKRNVERQLSTLQAQL 526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1233 ECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQ------ 1306
Cdd:pfam01576 527 SDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEkkqkkf 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1307 -QQLQGKQEAINSLQEELDSTQ-----------------DHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESC 1368
Cdd:pfam01576 607 dQMLAEEKAISARYAEERDRAEaeareketralslaralEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERS 686
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1369 QKETETKEQ----QVQQLQDEIRES---KLRLDQQeMMFQKLQKERE---REEQKfEAGKVTLEQQQRQLEKELTDQKsr 1438
Cdd:pfam01576 687 KRALEQQVEemktQLEELEDELQATedaKLRLEVN-MQALKAQFERDlqaRDEQG-EEKRRQLVKQVRELEAELEDER-- 762
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1439 lKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMaksgellALQKEADDMRADfsllRNQFLTERKK 1518
Cdd:pfam01576 763 -KQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMK-------DLQRELEEARAS----RDEILAQSKE 830
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1519 AEKQVAGLK-EALKIQR--SQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELSQMQQEYLELKKQVANQKD 1595
Cdd:pfam01576 831 SEKKLKNLEaELLQLQEdlAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLND 910
|
....
gi 568913760 1596 LERR 1599
Cdd:pfam01576 911 RLRK 914
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1420-1599 |
9.87e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 9.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1420 TLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEE------ERRIEGLERMLSQAKQQLSEREQQLMAKSGELLA 1493
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1494 LQKEADDMRADFSLLRN-----QFLTERKKAEKQVAGLKE----------ALKIQRSQLEKNLLEQkqenscMQKEMATI 1558
Cdd:COG3206 245 LRAQLGSGPDALPELLQspviqQLRAQLAELEAELAELSArytpnhpdviALRAQIAALRAQLQQE------AQRILASL 318
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568913760 1559 ELVAQDNHERARRLMKELSQMQQEYLELKKQVANQKDLERR 1599
Cdd:COG3206 319 EAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE 359
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1283-1589 |
1.04e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1283 KLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTK---CQNEL--LNEQTQLQED 1357
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKierYQADLeeLEERLEEQNE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1358 ISKWMA-RLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMM---FQKLQKEREREEQKFEAGKVTLE------QQQRQ 1427
Cdd:PRK04863 370 VVEEADeQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRaiqYQQAVQALERAKQLCGLPDLTADnaedwlEEFQA 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1428 LEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEG-LERmlSQAKQQLSEREQQLMaksgELLALQKEADDMRADFS 1506
Cdd:PRK04863 450 KEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGeVSR--SEAWDVARELLRRLR----EQRHLAEQLQQLRMRLS 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1507 LLRnQFLTERKKAEKQvagLKEALKIQRSQLEKN-LLEQKQENscMQKEMATIELVAQDNHERARRLMKELSQMQQEYLE 1585
Cdd:PRK04863 524 ELE-QRLRQQQRAERL---LAEFCKRLGKNLDDEdELEQLQEE--LEARLESLSESVSEARERRMALRQQLEQLQARIQR 597
|
....
gi 568913760 1586 LKKQ 1589
Cdd:PRK04863 598 LAAR 601
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
80-329 |
1.07e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 80 ATQAQNECRKLQDEKETLLQRLTEVQQEKEELEliaMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQ 159
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALK---KEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 160 LKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKE 239
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 240 FQNHLnhvvdglihpEEVAARVDELRKRLKLGAGEMRihspsdvlgKSLADLQKQFSEILARSQwEKEEAQVRERKLHEE 319
Cdd:COG4942 172 ERAEL----------EALLAELEEERAALEALKAERQ---------KLLARLEKELAELAAELA-ELQQEAEELEALIAR 231
|
250
....*....|
gi 568913760 320 MALQQEKLAN 329
Cdd:COG4942 232 LEAEAAAAAE 241
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2-407 |
1.27e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 2 KAQKRGKEQQLDIMNRQYTQLESRLDEILCRIA-----KETEEIKDLEQQL---------TDGQIAANEALKKDLEGVIS 67
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnqKEQDWNKELKSELknqekkleeIQNQISQNNKIISQLNEQIS 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 68 GLQEYLG-------TIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVna 140
Cdd:TIGR04523 346 QLKKELTnsesensEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL-- 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 141 sLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQ---SVLQTELEKERESLRDalgKAQSSEEKQQENN 217
Cdd:TIGR04523 424 -LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLEtqlKVLSRSINKIKQNLEQ---KQKELKSKEKELK 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 218 ELRTQLKQLQDDNSLLKKQLKEFQNhlnhvvdglihpeevaaRVDELRKRLKlgagemrihspsdVLGKSLADLQKQFSE 297
Cdd:TIGR04523 500 KLNEEKKELEEKVKDLTKKISSLKE-----------------KIEKLESEKK-------------EKESKISDLEDELNK 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 298 ILARSQWEKEEAQVRER-KLHEEMALQQEKLANGQEEFRQaceralearikfdkrqhnaRIQQLENEIHYLQENLKSMEK 376
Cdd:TIGR04523 550 DDFELKKENLEKEIDEKnKEIEELKQTQKSLKKKQEEKQE-------------------LIDQKEKEKKDLIKEIEEKEK 610
|
410 420 430
....*....|....*....|....*....|.
gi 568913760 377 IQGLTDLQLQEADEEKERILAQLQELEKKKK 407
Cdd:TIGR04523 611 KISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
987-1448 |
1.28e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 987 NEKKEKLTEELqSLQRDIKAAQHSedhhlqvLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELgHRREELLLLQDS 1066
Cdd:PRK04863 279 NERRVHLEEAL-ELRRELYTSRRQ-------LAAEQYRLVEMARELAELNEAESDLEQDYQAASDHL-NLVQTALRQQEK 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1067 LAQAKADLQEAltlgETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEK---NLQVVLQQLSR 1143
Cdd:PRK04863 350 IERYQADLEEL----EERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTraiQYQQAVQALER 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1144 HKTelknvadILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQqrreLERQRQLLERDRRETERVRA 1223
Cdd:PRK04863 426 AKQ-------LCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQ----FEQAYQLVRKIAGEVSRSEA 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1224 ESQAlqscveclsKEKedlqgqCESWEKKSSHAQRVLAATEESNKMEQSNlgKLELSVRKLRQELEQlsqdKLALHSEVA 1303
Cdd:PRK04863 495 WDVA---------REL------LRRLREQRHLAEQLQQLRMRLSELEQRL--RQQQRAERLLAEFCK----RLGKNLDDE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1304 EVQQQLQGKQEA-INSLQEELDSTQDHldlakqdlihttkcQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQL 1382
Cdd:PRK04863 554 DELEQLQEELEArLESLSESVSEARER--------------RMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQS 619
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 1383 QDEIrESKLRLDQQemMFQKLQKERE--REEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSA 1448
Cdd:PRK04863 620 GEEF-EDSQDVTEY--MQQLLEREREltVERDELAARKQALDEEIERLSQPGGSEDPRLNALAERFGG 684
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
82-415 |
1.35e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 82 QAQNECRKLQDEKETLLQrltEVQQEKEELELIAMDAENMRKELAEL---ESALQEQHE--------VNASL------QQ 144
Cdd:PRK04863 276 RHANERRVHLEEALELRR---ELYTSRRQLAAEQYRLVEMARELAELneaESDLEQDYQaasdhlnlVQTALrqqekiER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 145 AQGDLSAYETELETQLKLKdAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLrDALGKAQSseEKQQENNELRtQLK 224
Cdd:PRK04863 353 YQADLEELEERLEEQNEVV-EEADEQQEENEARAEAAEEEVDELKSQLADYQQAL-DVQQTRAI--QYQQAVQALE-RAK 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 225 QLQDDNSLLKKQLKEFQNHLNHvvdgliHPEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADlqkqfsEILARSQW 304
Cdd:PRK04863 428 QLCGLPDLTADNAEDWLEEFQA------KEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG------EVSRSEAW 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 305 EKEEAQVRERKLHEEMALQQEKLANGQEEFRQACE---RALEARIKFDKRQhnarIQQLENEIHYLQENLKSMEKIQGLT 381
Cdd:PRK04863 496 DVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRqqqRAERLLAEFCKRL----GKNLDDEDELEQLQEELEARLESLS 571
|
330 340 350
....*....|....*....|....*....|....
gi 568913760 382 DlQLQEADEEKERILAQLQELEKKKKREDARSQE 415
Cdd:PRK04863 572 E-SVSEARERRMALRQQLEQLQARIQRLAARAPA 604
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1210-1601 |
1.51e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.27 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1210 LLERDRRETERVRAESQALQSCVECLSKEKEdLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLgklELSVRKLRQELE 1289
Cdd:pfam10174 200 LLDQKEKENIHLREELHRRNQLQPDPAKTKA-LQTVIEMKDTKISSLERNIRDLEDEVQMLKTNG---LLHTEDREEEIK 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1290 QL----SQDKLaLHSEVAEVQQQLQGKQEAINSLQEELDS-------TQDHLDLAKQDLihTTKCQnellnEQTQLQEDI 1358
Cdd:pfam10174 276 QMevykSHSKF-MKNKIDQLKQELSKKESELLALQTKLETltnqnsdCKQHIEVLKESL--TAKEQ-----RAAILQTEV 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1359 SKWMARLESCQKETETKEQQVQQLQD-------EIRESKLRLDQQEMMFQKLQKEREreeqkfeagkvTLEQQQRQLEKE 1431
Cdd:pfam10174 348 DALRLRLEEKESFLNKKTKQLQDLTEekstlagEIRDLKDMLDVKERKINVLQKKIE-----------NLQEQLRDKDKQ 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1432 LTDQKSRLKQLLTDVSAAEGRLGTLQE----EERRIEGL---------ERM--LSQAKQQLSEREQQLMAKSGELLALQK 1496
Cdd:pfam10174 417 LAGLKERVKSLQTDSSNTDTALTTLEEalseKERIIERLkeqreredrERLeeLESLKKENKDLKEKVSALQPELTEKES 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1497 EADDMRADFSLLRNQFL---TERKKAEKQVAGLKEALKIQRSQLEK--NLLEQKQENSCMQKEMATIELVAQDNHERAR- 1570
Cdd:pfam10174 497 SLIDLKEHASSLASSGLkkdSKLKSLEIAVEQKKEECSKLENQLKKahNAEEAVRTNPEINDRIRLLEQEVARYKEESGk 576
|
410 420 430
....*....|....*....|....*....|....*..
gi 568913760 1571 ------RLMKELSQMQQEYLELKKQVANQKDLERRQM 1601
Cdd:pfam10174 577 aqaeveRLLGILREVENEKNDKDKKIAELESLTLRQM 613
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1222-1548 |
1.53e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.35 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1222 RAESQALQScVECLSKEKEDLQGQCESWEKKSSHA-QRVLAATEesnkmEQSNLGKLELSVRKLRQELEQLSQ-DKLALH 1299
Cdd:PLN02939 149 QARLQALED-LEKILTEKEALQGKINILEMRLSETdARIKLAAQ-----EKIHVEILEEQLEKLRNELLIRGAtEGLCVH 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1300 SEVAEvqqqlqgkqeaINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNeqtqlqedISKWMARLESCQKETETKEQQV 1379
Cdd:PLN02939 223 SLSKE-----------LDVLKEENMLLKDDIQFLKAELIEVAETEERVFK--------LEKERSLLDASLRELESKFIVA 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1380 QqlQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQrQLEKELTDQKSRLKQLLTDVSAAEgRLGTLQE- 1458
Cdd:PLN02939 284 Q--EDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQ-DLRDKVDKLEASLKEANVSKFSSY-KVELLQQk 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1459 ----EERRIEGLERMLSQAK--QQLSEREQQLMAK---SGELLALQKEADDMRADF----SLLRNQFLTERKKAEKQVAG 1525
Cdd:PLN02939 360 lkllEERLQASDHEIHSYIQlyQESIKEFQDTLSKlkeESKKRSLEHPADDMPSEFwsriLLLIDGWLLEKKISNNDAKL 439
|
330 340
....*....|....*....|...
gi 568913760 1526 LKEALKIQRSQLEKNLLEQKQEN 1548
Cdd:PLN02939 440 LREMVWKRDGRIREAYLSCKGKN 462
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1402-1655 |
1.54e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1402 KLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSERE 1481
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1482 QQLMAKSGELLALQKEADDMRADFSLLRNQF-----LTERKKAEKQVAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMA 1556
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVkelkeLKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1557 TIElvaqDNHERARRLMKELSQMQQEYLELKKQVANQKDLERRQMEVSDAMRTLKSEVKDEIRTSLRNLNQFLPELPADL 1636
Cdd:PRK03918 332 ELE----EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI 407
|
250 260
....*....|....*....|
gi 568913760 1637 ASILERNENLR-ELESLKEN 1655
Cdd:PRK03918 408 SKITARIGELKkEIKELKKA 427
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1019-1701 |
1.58e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1019 RESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQD--------------SLAQAKADLQEALTLGETE 1084
Cdd:pfam01576 204 QELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALArleeetaqknnalkKIRELEAQISELQEDLESE 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1085 VAEKCSHIREVKSLLEELSFQKGELNVHI----------SEKKTQLALIQQEMEKEEKNLQVVLQQLS-RHKTELKNVAD 1153
Cdd:pfam01576 284 RAARNKAEKQRRDLGEELEALKTELEDTLdttaaqqelrSKREQEVTELKKALEEETRSHEAQLQEMRqKHTQALEELTE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1154 ilQLETSELQGLKLQHDQKVVELEKAqvDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAEsqaLQSCVE 1233
Cdd:pfam01576 364 --QLEQAKRNKANLEKAKQALESENA--ELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAE---LAEKLS 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1234 CLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQsnlgklELSVRKLRQELeQLSQDKLALHSEVAEVQQQLQGKQ 1313
Cdd:pfam01576 437 KLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQ------ELLQEETRQKL-NLSTRLRQLEDERNSLQEQLEEEE 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1314 EAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRL 1393
Cdd:pfam01576 510 EAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDL 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1394 DQQEMMFQKLQK---------------------EREREEQKFEAGKVTLEQQQRQLE------KELTDQKSRLKQLLTDV 1446
Cdd:pfam01576 590 DHQRQLVSNLEKkqkkfdqmlaeekaisaryaeERDRAEAEAREKETRALSLARALEealeakEELERTNKQLRAEMEDL 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1447 SAAEGRLG-TLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRA----DFSLLRNQFLTERKKAEK 1521
Cdd:pfam01576 670 VSSKDDVGkNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAqferDLQARDEQGEEKRRQLVK 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1522 QVAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELSQMQQEYLELKKQVANQKDLERRQM 1601
Cdd:pfam01576 750 QVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSK 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1602 EVSDAMRTLKSEV---KDEIRTSLR---NLNQFLPELPADLASILERNENLRELESLKENFPFTTKERIFEEKSNfpqVH 1675
Cdd:pfam01576 830 ESEKKLKNLEAELlqlQEDLAASERarrQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSN---TE 906
|
730 740 750 760
....*....|....*....|....*....|....*....|....*...
gi 568913760 1676 IMDEHWR----------------------GEALRQRLRRHEDQLKAQL 1701
Cdd:pfam01576 907 LLNDRLRkstlqveqlttelaaerstsqkSESARQQLERQNKELKAKL 954
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1-197 |
1.62e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1 MKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLtdgqiaanEALK--KDLEGVISGLQ--EYLGTI 76
Cdd:PRK05771 77 KKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--------ERLEpwGNFDLDLSLLLgfKYVSVF 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 77 KGQATQAQNECRKLQDEKETLLqrltEVQQEKEELELIAM----DAENMRKELAELE-SALQEQHEvnaslqqaqGDLSA 151
Cdd:PRK05771 149 VGTVPEDKLEELKLESDVENVE----YISTDKGYVYVVVVvlkeLSDEVEEELKKLGfERLELEEE---------GTPSE 215
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568913760 152 YETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERE 197
Cdd:PRK05771 216 LIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE 261
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
83-420 |
1.63e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 83 AQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKL 162
Cdd:pfam02463 182 TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 163 KDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESL---RDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKE 239
Cdd:pfam02463 262 KEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELkseLLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 240 FQNHLNHVVDGLIHPEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEE 319
Cdd:pfam02463 342 KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 320 MALQQEKLANGQEEFrqacERALEARIKFDKRQHNARIQQLENEIHYLQE-----NLKSMEKIQGLTDLQLQEADEEKER 394
Cdd:pfam02463 422 KEEKKEELEILEEEE----ESIELKQGKLTEEKEELEKQELKLLKDELELkksedLLKETQLVKLQEQLELLLSRQKLEE 497
|
330 340
....*....|....*....|....*.
gi 568913760 395 ILAQLQELEKKKKREDARSQEQFLGL 420
Cdd:pfam02463 498 RSQKESKARSGLKVLLALIKDGVGGR 523
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2-249 |
1.64e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 2 KAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQqltdgQIAANEALKKDLEGVISGLQEYLGTIKGQAT 81
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTN-----QDSVKELIIKNLDNTRESLETQLKVLSRSIN 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 82 QAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQ-EQHEVNASLQQAQGDLSAYETE----- 155
Cdd:TIGR04523 479 KIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLEsEKKEKESKISDLEDELNKDDFElkken 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 156 LETQLKLKDAETSQLKQELEKLLrRTQLEQSVLQTELEKERESLRDAL---GKAQSSEEKQ-----QENNELRTQLKQLQ 227
Cdd:TIGR04523 559 LEKEIDEKNKEIEELKQTQKSLK-KKQEEKQELIDQKEKEKKDLIKEIeekEKKISSLEKElekakKENEKLSSIIKNIK 637
|
250 260
....*....|....*....|..
gi 568913760 228 DDNSLLKKQLKEFQNHLNHVVD 249
Cdd:TIGR04523 638 SKKNKLKQEVKQIKETIKEIRN 659
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
305-416 |
1.65e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 305 EKEEAQVRERKLHEEMALQQEKLANGQEEFrqaceraLEARIKFDK--RQHNARIQQLENEIHYLQENLKsmEKIQGLTD 382
Cdd:PRK12704 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEI-------HKLRNEFEKelRERRNELQKLEKRLLQKEENLD--RKLELLEK 107
|
90 100 110
....*....|....*....|....*....|....
gi 568913760 383 LQlQEADEEKERILAQLQELEKKKKREDARSQEQ 416
Cdd:PRK12704 108 RE-EELEKKEKELEQKQQELEKKEEELEELIEEQ 140
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
769-1290 |
1.66e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 769 HNLENEVSRLEDIMQHLKSKQREErrqKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFIDGHV 848
Cdd:TIGR04523 120 NKLEVELNKLEKQKKENKKNIDKF---LTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 849 ENLMTEL-EIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDA 927
Cdd:TIGR04523 197 LKLELLLsNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 928 EALEKRAQETalnlvkaEQQLRLLQADAEDLEQHkiKQEEILKEINKVVAAKDADFQCL-------NEKKEKLTEELQSL 1000
Cdd:TIGR04523 277 EQNNKKIKEL-------EKQLNQLKSEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIqnqisqnNKIISQLNEQISQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1001 QRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQD---SLAQAKADLQEA 1077
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEqikKLQQEKELLEKE 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1078 LTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQL 1157
Cdd:TIGR04523 428 IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKE 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1158 ETSELQGLKLQHD-----QKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQ----RQLLERDRRETERVRAESQAL 1228
Cdd:TIGR04523 508 LEEKVKDLTKKISslkekIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEidekNKEIEELKQTQKSLKKKQEEK 587
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568913760 1229 QSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQ 1290
Cdd:TIGR04523 588 QELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
902-1310 |
1.67e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 902 TKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQhKIKQEEILKEINKVVAAKDA 981
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK-LLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 982 DFQCLNEKKEKLtEELQSLQRDIKAA-QHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREEL 1060
Cdd:COG4717 144 LPERLEELEERL-EELRELEEELEELeAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1061 LLLQDSLAQAKADLQealTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEmekeeknLQVVLQQ 1140
Cdd:COG4717 223 EELEEELEQLENELE---AAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL-------LALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1141 LSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETER 1220
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1221 VRAESQALQSCVECLSKEKEDLQgQCESWEKKSSHAQRVLAA--TEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLAL 1298
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEEllGELEELLEALDEEELEEELEELEEELEELEEELEEL 451
|
410
....*....|..
gi 568913760 1299 HSEVAEVQQQLQ 1310
Cdd:COG4717 452 REELAELEAELE 463
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1289-1548 |
1.69e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1289 EQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESC 1368
Cdd:COG4372 6 EKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1369 QKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSA 1448
Cdd:COG4372 86 NEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQ----LEAQIAELQSEIAEREEELKELEEQLES 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1449 AEGRLGTLQEEERRIEgLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKE 1528
Cdd:COG4372 162 LQEELAALEQELQALS-EAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLD 240
|
250 260
....*....|....*....|
gi 568913760 1529 ALKIQRSQLEKNLLEQKQEN 1548
Cdd:COG4372 241 ALELEEDKEELLEEVILKEI 260
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1035-1255 |
1.70e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1035 LKSQVTSQQQELAVLDSELGHRREELLLLQDSL----AQAKADLQEALTLGETEVAEkcshIREVKSLLEELSFQKGELN 1110
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIeeqrKKNGENIARKQNKYDELVEE----AKTIKAEIEELTDELLNLV 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1111 V-------HISEKKTQLALIQQEME---KEEKNLQ------VVLQQLSRHKTELKNVADilqlETSELQglklqhdQKVV 1174
Cdd:PHA02562 248 MdiedpsaALNKLNTAAAKIKSKIEqfqKVIKMYEkggvcpTCTQQISEGPDRITKIKD----KLKELQ-------HSLE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1175 ELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSC-------VECLSKEKEDLQGQCE 1247
Cdd:PHA02562 317 KLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEfvdnaeeLAKLQDELDKIVKTKS 396
|
....*...
gi 568913760 1248 SWEKKSSH 1255
Cdd:PHA02562 397 ELVKEKYH 404
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
882-1209 |
1.77e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 882 RSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETA--LNLVKA----EQQLRLLQADA 955
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASdhLNLVQTalrqQEKIERYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 956 EDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSE---DHHLQVLRESETLLQAKRAEL 1032
Cdd:PRK04863 358 EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAiqyQQAVQALERAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1033 ETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGEtEVAEKCSHiREVKSLLEELSFQKgELNVH 1112
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG-EVSRSEAW-DVARELLRRLREQR-HLAEQ 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1113 ISEKKTQLALIQQEMEKEeknlqvvlQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELEN 1192
Cdd:PRK04863 515 LQQLRMRLSELEQRLRQQ--------QRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQ 586
|
330
....*....|....*..
gi 568913760 1193 LQQATQQQRRELERQRQ 1209
Cdd:PRK04863 587 QLEQLQARIQRLAARAP 603
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
4-544 |
1.94e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 4 QKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQIAANEALKKDLEGvisgLQEYLGTIKGQATQA 83
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK----LERRKVDDEEKLKES 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 84 QNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLK 163
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 164 DAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQ-LQDDNSLLKKQLKEFQN 242
Cdd:pfam02463 400 KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLkDELELKKSEDLLKETQL 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 243 HLNHVVDGLIHPEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMAL 322
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADE 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 323 QQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLE-NEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQE 401
Cdd:pfam02463 560 VEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEiDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKE 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 402 LEKKKKREDARSQEQFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEAERFSREAMQA- 480
Cdd:pfam02463 640 SAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEa 719
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 481 ----AKDLSRAEAEIELLQHLLREREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRLR 544
Cdd:pfam02463 720 eellADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
1109-1303 |
1.95e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 42.76 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1109 LNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNvadilQLETSELQGLKLQHDQKVVELEKAQVDVLEEKL 1188
Cdd:PRK11637 38 FSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKK-----QEEAISQASRKLRETQNTLNQLNKQIDELNASI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1189 ELENLQQAtqQQRRELERQR------------QLL---ERDRREtERVRAE----SQALQSCVECLSKEKEDLQGQCESW 1249
Cdd:PRK11637 113 AKLEQQQA--AQERLLAAQLdaafrqgehtglQLIlsgEESQRG-ERILAYfgylNQARQETIAELKQTREELAAQKAEL 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568913760 1250 EKKSSHAQRVLAAT-EESNKMEQS------NLGKLELSVRKLRQELEQLSQDKLALHSEVA 1303
Cdd:PRK11637 190 EEKQSQQKTLLYEQqAQQQKLEQArnerkkTLTGLESSLQKDQQQLSELRANESRLRDSIA 250
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1-244 |
2.16e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1 MKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQIAANEALKK--DLEGVISGLQEYLGTIKG 78
Cdd:pfam01576 206 LEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKirELEAQISELQEDLESERA 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 79 QATQAQNECRKLQDEKETLLQRL------TEVQQE---KEELELI----AMDAENMRKE-------------LAELESAL 132
Cdd:pfam01576 286 ARNKAEKQRRDLGEELEALKTELedtldtTAAQQElrsKREQEVTelkkALEEETRSHEaqlqemrqkhtqaLEELTEQL 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 133 QEQHEVNASLQQAQGDLSAYETELETQLKLkdaeTSQLKQELEKLLRRTQLEQSVLQ---TELEKERESLRDALGKAQSS 209
Cdd:pfam01576 366 EQAKRNKANLEKAKQALESENAELQAELRT----LQQAKQDSEHKRKKLEGQLQELQarlSESERQRAELAEKLSKLQSE 441
|
250 260 270
....*....|....*....|....*....|....*.
gi 568913760 210 EEKQQEN-NELRTQLKQLQDDNSLLKKQLKEFQNHL 244
Cdd:pfam01576 442 LESVSSLlNEAEGKNIKLSKDVSSLESQLQDTQELL 477
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1046-1486 |
2.36e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1046 LAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQ 1125
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1126 EMEKEEknLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQAT-QQQRREL 1204
Cdd:COG4717 124 LLQLLP--LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1205 ERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKK------------SSHAQRVLAATEESNKMEQS 1272
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARlllliaaallalLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1273 NLGKLELSVRKLRQELEQLSQ--DKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNE 1350
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKeaEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1351 QTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEagKVTLEQQQRQLEK 1430
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD--EEELEEELEELEE 439
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 1431 ELTDQKSRLKQLLTDVSAAEGRLGTLqEEERRIEGLERMLSQAKQQLSEREQQLMA 1486
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEQL-EEDGELAELLQELEELKAELRELAEEWAA 494
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
42-241 |
2.60e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 42 DLEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELeliamdaenm 121
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER---------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 122 RKELAELESALQEQHEVNASLQQ--AQGDLSAYETELETQLKLKDAETSQLKQ--ELEKLLRRTQLEQSVLQTELEKERE 197
Cdd:COG3883 85 REELGERARALYRSGGSVSYLDVllGSESFSDFLDRLSALSKIADADADLLEElkADKAELEAKKAELEAKLAELEALKA 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568913760 198 SLRDALGKAQSS-EEKQQENNELRTQLKQLQDDNSLLKKQLKEFQ 241
Cdd:COG3883 165 ELEAAKAELEAQqAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
102-218 |
2.63e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 102 TEVQQEKEELELIAMDAENMRKEL----AELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAE-TSQLKQELEK 176
Cdd:PRK00409 509 KLIGEDKEKLNELIASLEELERELeqkaEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQaIKEAKKEADE 588
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 568913760 177 LLRRTQLEQSVLQT-----ELEKERESLRDALGKAQSSEEKQQENNE 218
Cdd:PRK00409 589 IIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKKKKQKEKQE 635
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1264-1602 |
3.03e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1264 EESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAK-------QD 1336
Cdd:pfam05483 274 EEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKaahsfvvTE 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1337 LIHTTKCQNELLNEQTQLQE-----------DISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMmFQKLQK 1405
Cdd:pfam05483 354 FEATTCSLEELLRTEQQRLEknedqlkiitmELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQ-FEKIAE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1406 EREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLgtlqeEERRIEGLErMLSQAKQQLSEREQQLM 1485
Cdd:pfam05483 433 ELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL-----EKEKLKNIE-LTAHCDKLLLENKELTQ 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1486 AKSGELLALQKEADDMradfsllrNQFLTERKKAEKQVAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDN 1565
Cdd:pfam05483 507 EASDMTLELKKHQEDI--------INCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSI 578
|
330 340 350
....*....|....*....|....*....|....*...
gi 568913760 1566 HERARRLMKELSQMQQEYLELKKQVANQ-KDLERRQME 1602
Cdd:pfam05483 579 EYEVLKKEKQMKILENKCNNLKKQIENKnKNIEELHQE 616
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1402-1547 |
3.07e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1402 KLQKEREREEQKFEAgKVTLEQQQRQLEKELTDQKSRLKQLltdvsaaegrlgtlqeeERRIEGLERMLSQAKQQLSERE 1481
Cdd:PRK12704 48 KKEAEAIKKEALLEA-KEEIHKLRNEFEKELRERRNELQKL-----------------EKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 1482 QQLMAKSGELLALQKEADDMRADFSLLRNQfltERKKAEKqVAGL--KEALKIQRSQLEKNLLEQKQE 1547
Cdd:PRK12704 110 EELEKKEKELEQKQQELEKKEEELEELIEE---QLQELER-ISGLtaEEAKEILLEKVEEEARHEAAV 173
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
771-1039 |
3.09e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 771 LENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDI-------DDLLQEKKELELEVEELH-RTIERHQQRKD 842
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLhkleealNDLEARLSHSRIPEIQAElSKLEEEVSRIE 811
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 843 FIDGHVENLMTELEIEKSL--KHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNL 920
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYleKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 921 LQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAkDADFQCLNEKKEKLTEELQSL 1000
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQRVEEEIRAL 970
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 568913760 1001 QR-DIKAAQHSEDhhlQVLRESEtlLQAKRAELETLKSQV 1039
Cdd:TIGR02169 971 EPvNMLAIQEYEE---VLKRLDE--LKEKRAKLEEERKAI 1005
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1353-1487 |
3.10e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1353 QLQEDISKWMARLEscqKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKEL 1432
Cdd:PRK12704 61 EAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI 137
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 568913760 1433 TDQKSRLKqlltdvsaaegRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAK 1487
Cdd:PRK12704 138 EEQLQELE-----------RISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEE 181
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1008-1485 |
3.56e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.04 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1008 QHSEDHHLQVLRESETL-LQAKRAELETLKSQVTSQQQ---ELAVLDSELGH--RREELLLLQDSLAQAKADLQEALTLG 1081
Cdd:pfam05557 5 IESKARLSQLQNEKKQMeLEHKRARIELEKKASALKRQldrESDRNQELQKRirLLEKREAEAEEALREQAELNRLKKKY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1082 ETEVAEKcshIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSE 1161
Cdd:pfam05557 85 LEALNKK---LNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1162 LQGLKlQHDQKVVELEKaQVDVLEEKLELENLQQATQQQRRELERqrqLLERDRRETERVRaesqALQSCVECLSKEKED 1241
Cdd:pfam05557 162 QSSLA-EAEQRIKELEF-EIQSQEQDSEIVKNSKSELARIPELEK---ELERLREHNKHLN----ENIENKLLLKEEVED 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1242 LQGQCESWEK----------KSSHAQRVLAATEESNKMEQSNLGKLELsvrkLRQELEQLSQDKLALHSEVAEVQQQLQG 1311
Cdd:pfam05557 233 LKRKLEREEKyreeaatlelEKEKLEQELQSWVKLAQDTGLNLRSPED----LSRRIEQLQQREIVLKEENSSLTSSARQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1312 KQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQdeireskl 1391
Cdd:pfam05557 309 LEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLE-------- 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1392 RLDQQEMMFQKLQKEREREEQKFEAGKVTL---EQQQRQLEKELtdQKSRLKQLLTDVSAAEGRLGTLQeeeRRIEGLER 1468
Cdd:pfam05557 381 RIEEAEDMTQKMQAHNEEMEAQLSVAEEELggyKQQAQTLEREL--QALRQQESLADPSYSKEEVDSLR---RKLETLEL 455
|
490
....*....|....*..
gi 568913760 1469 MLSQAKQQLSEREQQLM 1485
Cdd:pfam05557 456 ERQRLREQKNELEMELE 472
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
134-259 |
3.62e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 134 EQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQ 213
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRY 484
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 568913760 214 QENNELRTQLKQLQDDNSLLKKQLKEfqnhlnhVVDglihPEEVAA 259
Cdd:COG0542 485 GKIPELEKELAELEEELAELAPLLRE-------EVT----EEDIAE 519
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
117-356 |
3.73e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 117 DAENMRKELAELESA------LQEQHEVnasLQQAQGDLSAYETELETQLKLKdaetsQLKQELEKLLRRTQLEQsvLQT 190
Cdd:COG4913 226 AADALVEHFDDLERAhealedAREQIEL---LEPIRELAERYAAARERLAELE-----YLRAALRLWFAQRRLEL--LEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 191 ELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLlkKQLKEFQNHLNHVVDGLihpEEVAARVDELRKRLKl 270
Cdd:COG4913 296 ELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG--DRLEQLEREIERLEREL---EERERRRARLEALLA- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 271 gagemrihspsdVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACE--RALEARIK- 347
Cdd:COG4913 370 ------------ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAeiASLERRKSn 437
|
....*....
gi 568913760 348 FDKRQHNAR 356
Cdd:COG4913 438 IPARLLALR 446
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
123-574 |
3.77e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 123 KELAELESALQEQHEVNASLQQAQGDLSAYETELEtQLKLKDAETSQLKQELEKLLRRTQLEQsvlqtELEKERESLRDA 202
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELE-ELEAELEELREELEKLEKLLQLLPLYQ-----ELEALEAELAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 203 LGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLIhpEEVAARVDELRKRLKLgagemrihspsd 282
Cdd:COG4717 145 PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL--QDLAEELEELQQRLAE------------ 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 283 vLGKSLADLQKQFSEIlarsqwEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLEN 362
Cdd:COG4717 211 -LEEELEEAQEELEEL------EEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 363 EIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQ-LQELEKKKKREDARSQEQFLGLDEELKSLKKAVAASDKLAA-A 440
Cdd:COG4717 284 GLLALLFLLLAREKASLGKEAEELQALPALEELEEEeLEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEeL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 441 ELTIAKDQLKSLhgtVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEMENADLGAKGAN 520
Cdd:COG4717 364 QLEELEQEIAAL---LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEE 440
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 521 SQLL--EIEALNEAMAKQRAEITRLRDVLNLTGAGTKggIENVLEEIAELRHAVSA 574
Cdd:COG4717 441 LEELeeELEELREELAELEAELEQLEEDGELAELLQE--LEELKAELRELAEEWAA 494
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1419-1616 |
3.82e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1419 VTLEQQQRQLEkELTDQKSRLKQLLTDVSAAEGRLGTLQ--EEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQK 1496
Cdd:COG4913 245 EDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1497 EADDMRADfsllrnqflterkkAEKQVAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKEL 1576
Cdd:COG4913 324 ELDELEAQ--------------IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568913760 1577 SQMQQEYLELKKQVANQKD-LERRQMEVSDAMRTLKSEVKD 1616
Cdd:COG4913 390 AALLEALEEELEALEEALAeAEAALRDLRRELRELEAEIAS 430
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1-502 |
3.95e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1 MKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLtdgqIAANEALKK--DLEGVISGLQEYLGTIKG 78
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDY----NNLKSALNElsSLEDMKNRYESEIKTAES 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 79 QATQAQNECRKLQDEKETlLQRLTEVQQEKEELELIAM-----DAENMRKELAELESALQEQHEVNASLQQAQGDLSAYE 153
Cdd:PRK01156 264 DLSMELEKNNYYKELEER-HMKIINDPVYKNRNYINDYfkyknDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYI 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 154 -------------TELET-------------QLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQ 207
Cdd:PRK01156 343 kkksryddlnnqiLELEGyemdynsylksieSLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDIS 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 208 SS-EEKQQENNELRTQLKQLQDDNSLLKKQ------------------LKEFQNHLNHVVDGLIHPEEVAARVDELRKRL 268
Cdd:PRK01156 423 SKvSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcgttlgeeksnhiINHYNEKKSRLEEKIREIEIEVKDIDEKIVDL 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 269 K-----LGAGEMRIHSPSDVLGKSL-ADLQKQFSEI--LARSQWEKEEAQVRERKLHeemalqQEKLANGQEEFRQACER 340
Cdd:PRK01156 503 KkrkeyLESEEINKSINEYNKIESArADLEDIKIKIneLKDKHDKYEEIKNRYKSLK------LEDLDSKRTSWLNALAV 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 341 ALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDArsqeqflgL 420
Cdd:PRK01156 577 ISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEK--------L 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 421 DEELKSLKKAVAASD------KLAAAELTIAKDQLKSLHGTVVRINQERAEE-------LQEAERFSREAMQAAKDLSRA 487
Cdd:PRK01156 649 RGKIDNYKKQIAEIDsiipdlKEITSRINDIEDNLKKSRKALDDAKANRARLestieilRTRINELSDRINDINETLESM 728
|
570
....*....|....*
gi 568913760 488 EAEIELLQHLLRERE 502
Cdd:PRK01156 729 KKIKKAIGDLKRLRE 743
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1117-1491 |
4.63e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 4.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1117 KTQLALI--QQEMEKEEKNLQVVLQQ-------LSRHKTEL----KNVADI---LQLETSELQGLKLQHDQKVVE-LEKA 1179
Cdd:PRK11281 42 QAQLDALnkQKLLEAEDKLVQQDLEQtlalldkIDRQKEETeqlkQQLAQApakLRQAQAELEALKDDNDEETREtLSTL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1180 QVDVLEEKLELENLQQATQQQrrELERQRQLLERDRRETERVRAE----SQALQSCVECLSKEKEDlqgqceswEKKSSH 1255
Cdd:PRK11281 122 SLRQLESRLAQTLDQLQNAQN--DLAEYNSQLVSLQTQPERAQAAlyanSQRLQQIRNLLKGGKVG--------GKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1256 AQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHseVAEVQQQLQGKQEAINS--------------LQE 1321
Cdd:PRK11281 192 SQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTAR--IQRLEHQLQLLQEAINSkrltlsektvqeaqSQD 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1322 ELDSTQDHLDLAK---------QDLIHTTkcqnELLNEQTQLQEDISKWMARLEscQKETETKEqQVQQLQDEIRESKLR 1392
Cdd:PRK11281 270 EAARIQANPLVAQeleinlqlsQRLLKAT----EKLNTLTQQNLRVKNWLDRLT--QSERNIKE-QISVLKGSLLLSRIL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1393 LDQQemmfQKLQKEREREEQKFEAGKVTLEQ----QQRQlekELTDQKSRLKQLLTD----VSAAEGRLGTLQEEERRiE 1464
Cdd:PRK11281 343 YQQQ----QALPSADLIEGLADRIADLRLEQfeinQQRD---ALFQPDAYIDKLEAGhkseVTDEVRDALLQLLDERR-E 414
|
410 420 430
....*....|....*....|....*....|...
gi 568913760 1465 GLERMLSQAKQQLSE------REQQLMAKSGEL 1491
Cdd:PRK11281 415 LLDQLNKQLNNQLNLainlqlNQQQLLSVSDSL 447
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1209-1576 |
4.74e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 4.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1209 QLLERDRRETERVRAE-SQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQE 1287
Cdd:pfam07888 30 ELLQNRLEECLQERAElLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSAS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1288 LEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLES 1367
Cdd:pfam07888 110 SEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1368 CQKE-------TETKEQQVQQLQDEIRESKLRLD-------QQEMMFQKLQKERER---EEQKFEAGKVTLEQQQRQLEK 1430
Cdd:pfam07888 190 LSKEfqelrnsLAQRDTQVLQLQDTITTLTQKLTtahrkeaENEALLEELRSLQERlnaSERKVEGLGEELSSMAAQRDR 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1431 ELTD-QKSRLKQLLTDVSAAEGRLGtLQEEERRIEGLERMLSQAKQQLSEREQQLmakSGELLALQKEADDMRadfsllr 1509
Cdd:pfam07888 270 TQAElHQARLQAAQLTLQLADASLA-LREGRARWAQERETLQQSAEADKDRIEKL---SAELQRLEERLQEER------- 338
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568913760 1510 nqflTERKKAEKQVAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKEL 1576
Cdd:pfam07888 339 ----MEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRL 401
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
894-1211 |
4.77e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 894 EAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEIN 973
Cdd:COG4372 14 SLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 974 KVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSEL 1053
Cdd:COG4372 94 AELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQEL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1054 ghRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKN 1133
Cdd:COG4372 174 --QALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEEL 251
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568913760 1134 LQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLL 1211
Cdd:COG4372 252 LEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLE 329
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
114-357 |
5.08e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 114 IAMDAENMRKELAELESALQEQ-HEVNASLQQAQGDLSAYETE-----LETQLKLKDAETSQLKQELEKLLRRTQleqsv 187
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQlPELRKELEEAEAALEEFRQKnglvdLSEEAKLLLQQLSELESQLAEARAELA----- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 188 lqtELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHlnhvvdgliHPEEVAAR--VDELR 265
Cdd:COG3206 237 ---EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPN---------HPDVIALRaqIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 266 KRLKLGAGEMRIHSPSDV--LGKSLADLQKQFSEILARSQwekeEAQVRERKLHEemaLQQEkLANGQEEFRQACERALE 343
Cdd:COG3206 305 AQLQQEAQRILASLEAELeaLQAREASLQAQLAQLEARLA----ELPELEAELRR---LERE-VEVARELYESLLQRLEE 376
|
250
....*....|....
gi 568913760 344 ARIKFDKRQHNARI 357
Cdd:COG3206 377 ARLAEALTVGNVRV 390
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1456-1615 |
5.17e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1456 LQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRAdfsllrnqfltERKKAEKQVAGLKEALKIQRS 1535
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEK-----------EIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1536 QLE--KNLLEQKQenscMQKEMATIELVAQDNHERARRLMKELSQMQQEYLELKKQVAN-QKDLERRQMEVSDAMRTLKS 1612
Cdd:COG1579 81 QLGnvRNNKEYEA----LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAElEAELEEKKAELDEELAELEA 156
|
...
gi 568913760 1613 EVK 1615
Cdd:COG1579 157 ELE 159
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
871-1060 |
5.49e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 5.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 871 IECLEKTLLKRRSELREADRLLAEAENELactkektksaveKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRL 950
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAEL------------DALQERREALQRLAEYSWDEIDVASAEREIAELEAELER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 951 LQADAEDLEQHKIKQEEILKEINKVVAAKDAdfqcLNEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLR-ESETLLQAKR 1029
Cdd:COG4913 680 LDASSDDLAALEEQLEELEAELEELEEELDE----LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlELRALLEERF 755
|
170 180 190
....*....|....*....|....*....|....
gi 568913760 1030 AEL---ETLKSQVTSQQQELAVLDSELGHRREEL 1060
Cdd:COG4913 756 AAAlgdAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2-209 |
5.56e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 2 KAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQIAANEALK------------------KDLE 63
Cdd:COG3883 36 QAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARalyrsggsvsyldvllgsESFS 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 64 GVISGLQeYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELeliamdAENMRKELAELESALQEQHEVNASLQ 143
Cdd:COG3883 116 DFLDRLS-ALSKIADADADLLEELKADKAELEAKKAELEAKLAELEAL------KAELEAAKAELEAQQAEQEALLAQLS 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 144 QAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSS 209
Cdd:COG3883 189 AEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGA 254
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
289-407 |
5.64e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 5.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 289 ADLQKQfsEILARSQWEKEEAQVRE-RKLHEEMALQQEKLangQEEFRQACERAlearikfdKRQHNARIQQLENEIHYL 367
Cdd:PRK00409 523 ASLEEL--ERELEQKAEEAEALLKEaEKLKEELEEKKEKL---QEEEDKLLEEA--------EKEAQQAIKEAKKEADEI 589
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 568913760 368 QENLKSMEKiQGLTDLQLQEADEEKERILAQLQELEKKKK 407
Cdd:PRK00409 590 IKELRQLQK-GGYASVKAHELIEARKRLNKANEKKEKKKK 628
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
765-1389 |
5.69e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 765 IPEHHNLENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFI 844
Cdd:PRK01156 158 ILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 845 DGHVENLMTELEIEKSLkhhEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACtkeKTKSAVEKFTDAKRNLLQTE 924
Cdd:PRK01156 238 KSALNELSSLEDMKNRY---ESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVY---KNRNYINDYFKYKNDIENKK 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 925 SDAEALEKRAQETALNLVKAEQqlrlLQADAEDLEQHKIKQEEILKEINKVVAAKDaDFQCLNEKKEKLTEELQSLQRDI 1004
Cdd:PRK01156 312 QILSNIDAEINKYHAIIKKLSV----LQKDYNDYIKKKSRYDDLNNQILELEGYEM-DYNSYLKSIESLKKKIEEYSKNI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1005 KAAQHSEDHHLQVLRESETLLQAKRAE----LETLKSQVTSQQQELAVLDSELGHRREELLLLQdslAQAKADLQeALTL 1080
Cdd:PRK01156 387 ERMSAFISEILKIQEIDPDAIKKELNEinvkLQDISSKVSSLNQRIRALRENLDELSRNMEMLN---GQSVCPVC-GTTL 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1081 GEtevaEKCSHIREvkslleelsfqkgelnvHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELkNVADILQLETS 1160
Cdd:PRK01156 463 GE----EKSNHIIN-----------------HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYL-ESEEINKSINE 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1161 ELQGLKLQHDqkvveLEKAQVDVLEEKLELENLQQATQQQrreleRQRQLLERDRRETERVRAESQALQSCVECLSKEKE 1240
Cdd:PRK01156 521 YNKIESARAD-----LEDIKIKINELKDKHDKYEEIKNRY-----KSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSN 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1241 DLQGQCESWEKKSshaQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLA---LHSEVAEVQQQLQGKQEAIN 1317
Cdd:PRK01156 591 EIKKQLNDLESRL---QEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILiekLRGKIDNYKKQIAEIDSIIP 667
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568913760 1318 SLQE---ELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQD--EIRES 1389
Cdd:PRK01156 668 DLKEitsRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDlkRLREA 744
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
774-1177 |
5.69e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 774 EVSRLEDIMQHLKSK-QREERRQKASTQ---HSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFIDGHVE 849
Cdd:pfam15921 427 EVQRLEALLKAMKSEcQGQMERQMAAIQgknESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQ 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 850 NL-----MTELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRL---LAEAENELACTKEKTKSAVEKFTDAKRNLL 921
Cdd:pfam15921 507 EKeraieATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALklqMAEKDKVIEILRQQIENMTQLVGQHGRTAG 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 922 QTESDAEALEKRAQETALNLV-------KAEQQLRLLQADAEDLEQHKIK----QEEILKEINKVVAAKDadfQCLNEKK 990
Cdd:pfam15921 587 AMQVEKAQLEKEINDRRLELQefkilkdKKDAKIRELEARVSDLELEKVKlvnaGSERLRAVKDIKQERD---QLLNEVK 663
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 991 ------EKLTEELQSLQRDIKAAQHsedhhlqvlrESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQ 1064
Cdd:pfam15921 664 tsrnelNSLSEDYEVLKRNFRNKSE----------EMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQ 733
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1065 ----------DSLAQAKADLQEALTLGETEV----AEKCSHIREVKSLLEELSFQKGELNVHISEKKtqlaliqqEMEKE 1130
Cdd:pfam15921 734 kqitakrgqiDALQSKIQFLEEAMTNANKEKhflkEEKNKLSQELSTVATEKNKMAGELEVLRSQER--------RLKEK 805
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 568913760 1131 EKNLQVVLQQLSRHKTELKnvaDILQLETSELQGLKLQHDQKVVELE 1177
Cdd:pfam15921 806 VANMEVALDKASLQFAECQ---DIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1422-1653 |
5.96e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 5.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1422 EQQQRQLEKELTDQKSR-LKQLLTDVSAAEGRLGTLQEEERRIEGLERMLsQAKQQLSEREQQlmAKSGELLA-----LQ 1495
Cdd:COG5022 829 EKKLRETEEVEFSLKAEvLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVE-LAERQLQELKID--VKSISSLKlvnleLE 905
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1496 KEADDMRADFS---LLRNQFLTERKKAEKQV---AGLKEALKIQRSQLEKnLLEQKQENSCMQKEMATIELVAQDNHERA 1569
Cdd:COG5022 906 SEIIELKKSLSsdlIENLEFKTELIARLKKLlnnIDLEEGPSIEYVKLPE-LNKLHEVESKLKETSEEYEDLLKKSTILV 984
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1570 RRLMKELSQMQQEYLELKKQVANQKDLER--RQMEVSDAMRTLKSEVKDEIRTSLRNLNQFLPELPADLASILERNENLR 1647
Cdd:COG5022 985 REGNKANSELKNFKKELAELSKQYGALQEstKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQA 1064
|
....*.
gi 568913760 1648 ELESLK 1653
Cdd:COG5022 1065 RYKALK 1070
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
1194-1486 |
6.13e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 41.71 E-value: 6.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1194 QQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQgQCESWEKKSSHAQRVLAATEESNkmeqsn 1273
Cdd:PRK10246 331 RHHAAKQSAELQAQQQSLNTWLAEHDRFRQWNNELAGWRAQFSQQTSDRE-QLRQWQQQLTHAEQKLNALPAIT------ 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1274 lgkLELSVRKLRQELEQLSQDK------LALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDliHTTKCQNEL 1347
Cdd:PRK10246 404 ---LTLTADEVAAALAQHAEQRplrqrlVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQR--YKEKTQQLA 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1348 ----LNEQTQLQEDISKWMARLES---CQKETETKEQQVQQLQD-EIRESKLRLDQQEMMFQKLQKE------------R 1407
Cdd:PRK10246 479 dvktICEQEARIKDLEAQRAQLQAgqpCPLCGSTSHPAVEAYQAlEPGVNQSRLDALEKEVKKLGEEgaalrgqldaltK 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1408 EREEQKFEAGKVTLEQQ-------------------QRQLEKELTDQKSRLKQLLtdvsaaegRLGTLQEEERRIEGLER 1468
Cdd:PRK10246 559 QLQRDESEAQSLRQEEQaltqqwqavcaslnitlqpQDDIQPWLDAQEEHERQLR--------LLSQRHELQGQIAAHNQ 630
|
330
....*....|....*...
gi 568913760 1469 MLSQAKQQLSEREQQLMA 1486
Cdd:PRK10246 631 QIIQYQQQIEQRQQQLLT 648
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
57-215 |
6.44e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 40.95 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 57 ALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQH 136
Cdd:pfam15905 177 AKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIAQLEELLKEKN 256
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568913760 137 EVNASLQQaqgDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDalgKAQSSEEKQQE 215
Cdd:pfam15905 257 DEIESLKQ---SLEEKEQELSKQIKDLNEKCKLLESEKEELLREYEEKEQTLNAELEELKEKLTL---EEQEHQKLQQK 329
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
990-1444 |
6.45e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.58 E-value: 6.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 990 KEKLTEELQSLQRDIKAAQhsedhhlqvLRESETLLQAKRAELETLKSQVTSQQQELAV-----LDSELghrREELLLLQ 1064
Cdd:PRK10929 25 EKQITQELEQAKAAKTPAQ---------AEIVEALQSALNWLEERKGSLERAKQYQQVIdnfpkLSAEL---RQQLNNER 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1065 DSLAQAKADLQ-EALtlgETEVAEKCSHIREVKSLLEelsfQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSR 1143
Cdd:PRK10929 93 DEPRSVPPNMStDAL---EQEILQVSSQLLEKSRQAQ----QEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1144 HKTELKnvadilQLETSELQGLKLQHDQKVVELEKAQVdvleeklelenlqqaTQQQRRELERQRqlLERDRRETERVRA 1223
Cdd:PRK10929 166 PNTPLA------QAQLTALQAESAALKALVDELELAQL---------------SANNRQELARLR--SELAKKRSQQLDA 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1224 ESQALQSCVECLSKEKedlqgqceswekksshAQRVLAATE----ESNKMEQSNLGKLELSvRKLRQELEQLSQ--DKLA 1297
Cdd:PRK10929 223 YLQALRNQLNSQRQRE----------------AERALESTEllaeQSGDLPKSIVAQFKIN-RELSQALNQQAQrmDLIA 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1298 LHSEVAeVQQQLQGKQeAINSLQEeldstqdhldlakqdlihttkcQNELLNEQTQLQEDISKWMARLESCQKEtetkeq 1377
Cdd:PRK10929 286 SQQRQA-ASQTLQVRQ-ALNTLRE----------------------QSQWLGVSNALGEALRAQVARLPEMPKP------ 335
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568913760 1378 qvQQLQDEIRESKLRLDQQEMMFQKLQKEREreeQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLT 1444
Cdd:PRK10929 336 --QQLDTEMAQLRVQRLRYEDLLNKQPQLRQ---IRQADGQPLTAEQNRILDAQLRTQRELLNSLLS 397
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
4-177 |
6.94e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 6.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 4 QKRGKEQQLDIMNRQYTQLESRLDEILCR-------IAKETEEIKDLEQQLTDgQIAANEALKKDLEGVISGLQEYLGTI 76
Cdd:PHA02562 189 KIDHIQQQIKTYNKNIEEQRKKNGENIARkqnkydeLVEEAKTIKAEIEELTD-ELLNLVMDIEDPSAALNKLNTAAAKI 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 77 KGQATQAQNECRKLQDEKE--TLLQ-------RLTEVQQEKEELELIAMDAENMRKELAELESALQEQ----HEVNASLQ 143
Cdd:PHA02562 268 KSKIEQFQKVIKMYEKGGVcpTCTQqisegpdRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQskklLELKNKIS 347
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568913760 144 QAQGDLSAYET----------ELETQLKLKDAETSQLKQELEKL 177
Cdd:PHA02562 348 TNKQSLITLVDkakkvkaaieELQAEFVDNAEELAKLQDELDKI 391
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1421-1621 |
7.46e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 7.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1421 LEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEE----ERRIEGLERMLSQAKQQLSEREQQL------MAKSG- 1489
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAElealQAEIDKLQAEIAEAEAEIEERREELgeraraLYRSGg 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1490 -----ELLALQKEADDMRADFSLLrNQFLTERKKAEKQVAGLKEALKIQRSQLEknllEQKQENSCMQKEMATIELVAQD 1564
Cdd:COG3883 101 svsylDVLLGSESFSDFLDRLSAL-SKIADADADLLEELKADKAELEAKKAELE----AKLAELEALKAELEAAKAELEA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568913760 1565 NHERARRLMKELSQMQQEYLELKKQVANQKDLERRQMEVSDAMRTLKSEVKDEIRTS 1621
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
1280-1491 |
8.10e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 40.83 E-value: 8.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1280 SVRKLRQELEQLSQDKLALHSEVAEVQQQlQGKQEAINSLQeeldstqdhLDLAKQDLIHTTkCQNELLNEQTQLQEDIS 1359
Cdd:PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQ-QAAQERLLAAQ---------LDAAFRQGEHTG-LQLILSGEESQRGERIL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1360 KWM-----ARLESCQKETETKE---QQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLeKE 1431
Cdd:PRK11637 159 AYFgylnqARQETIAELKQTREelaAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQL-SE 237
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568913760 1432 LTDQKSRLK-QLLTDVSAAEGRlgtLQEEERRIEGLERMLSQAKQ-----QLSEREQQLMAKSGEL 1491
Cdd:PRK11637 238 LRANESRLRdSIARAEREAKAR---AEREAREAARVRDKQKQAKRkgstyKPTESERSLMSRTGGL 300
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
38-134 |
8.29e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 8.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 38 EEIKDLEQQLTDGQIAAnEALKKDLEgviSGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMD 117
Cdd:COG0542 411 EELDELERRLEQLEIEK-EALKKEQD---EASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGK 486
|
90
....*....|....*..
gi 568913760 118 AENMRKELAELESALQE 134
Cdd:COG0542 487 IPELEKELAELEEELAE 503
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
305-539 |
9.57e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 305 EKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEAR----IKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGL 380
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARkadeLKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA 1317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 381 TDLQlQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAasDKLAAAELTIAKDQLKSlhgtvvriN 460
Cdd:PTZ00121 1318 DEAK-KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA--AEKKKEEAKKKADAAKK--------K 1386
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568913760 461 QERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREgqfrdEMENADLGAKGANSQLLEIEALNEAMAKQRAE 539
Cdd:PTZ00121 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAE-----EKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
1271-1442 |
9.71e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 40.10 E-value: 9.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1271 QSNLGKLELSVRKLRQELEQLSqdklALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTtkcqnellnE 1350
Cdd:pfam00529 64 EAQLAKAQAQVARLQAELDRLQ----ALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARR---------R 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 1351 QTQLQEDISKwmarlescqKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREeqkFEAGKVTLEQQQRQLEK 1430
Cdd:pfam00529 131 VLAPIGGISR---------ESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAE---VRSELSGAQLQIAEAEA 198
|
170
....*....|..
gi 568913760 1431 ELTDQKSRLKQL 1442
Cdd:pfam00529 199 ELKLAKLDLERT 210
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
26-340 |
9.75e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 9.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 26 LDEILCRIAKETEEIKDLEQQLTDGQiAANEALKKDLEGVISGLQEYLGTIKGQATQAqnecrkLQDEketllQRLTEVQ 105
Cdd:COG3096 356 LEELTERLEEQEEVVEEAAEQLAEAE-ARLEAAEEEVDSLKSQLADYQQALDVQQTRA------IQYQ-----QAVQALE 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 106 QEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKL-----KDAETSQLKQELEKLLRR 180
Cdd:COG3096 424 KARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELvckiaGEVERSQAWQTARELLRR 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 181 TQLEQSVLQTElekerESLRDALGKAQSSEEKQQENNELRTQLKQ-----------LQDDNSLLKKQLKEFQNHLNHVVD 249
Cdd:COG3096 504 YRSQQALAQRL-----QQLRAQLAELEQRLRQQQNAERLLEEFCQrigqqldaaeeLEELLAELEAQLEELEEQAAEAVE 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568913760 250 GLI----HPEEVAARVDELRKR----LKLGAGEMRIHSPSDVLGKSLADLQKQFSEILAR-SQWEKEEAQVRERKLHEEM 320
Cdd:COG3096 579 QRSelrqQLEQLRARIKELAARapawLAAQDALERLREQSGEALADSQEVTAAMQQLLEReREATVERDELAARKQALES 658
|
330 340
....*....|....*....|..
gi 568913760 321 ALQQEKLANGQEEFR--QACER 340
Cdd:COG3096 659 QIERLSQPGGAEDPRllALAER 680
|
|
| |
