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Conserved domains on  [gi|568918337|ref|XP_006500208|]
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endoplasmic reticulum junction formation protein lunapark isoform X1 [Mus musculus]

Protein Classification

zinc-ribbon domain-containing protein( domain architecture ID 10562191)

zinc-ribbon domain-containing protein such as vertebrate endoplasmic reticulum junction formation protein lunapark, an endoplasmic reticulum (ER)-shaping membrane protein that plays a role in determining ER morphology

Gene Ontology:  GO:0016020|GO:0046872
PubMed:  32851833

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 250-300 1.04e-24

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


:

Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 1.04e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568918337  250 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 300
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 151-245 7.46e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 7.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  151 PPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGP----PERTVAPALPRRLGSPATS 226
Cdd:PHA03247 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPspwdPADPPAAVLAPAAALPPAA 2822

                          90       100
                  ....*....|....*....|....*
gi 568918337  227 VPGMGLHPP------GPPLARPILP 245
Cdd:PHA03247 2823 SPAGPLPPPtsaqptAPPPPPGPPP 2847
 
Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 250-300 1.04e-24

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 1.04e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568918337  250 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 300
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
COG5415 COG5415
Predicted integral membrane metal-binding protein [General function prediction only];
1-306 2.14e-15

Predicted integral membrane metal-binding protein [General function prediction only];


Pssm-ID: 227702 [Multi-domain]  Cd Length: 251  Bit Score: 75.41  E-value: 2.14e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337   1 MGGLFSRWRAKPSTVEvLENIDKEIQALEEFREKNQRLQKLWVGRLIIYSSILYLFTCLIVYLWYlpDEFTARLVMTLpF 80
Cdd:COG5415    1 MGSRFDKDFVTKYTAD-LSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLALSYIYWEY--HGYRPYLVITA-L 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  81 FAFPLIIWTLRTVLIFFFSKRTERNNEALDDLKSQKKKILEEVMEKETYKTAKLILERF-DPDSKKAKEFEppsagaavt 159
Cdd:COG5415   77 LLGSGSLYMFRWALTKLYEFRNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQKYsEELNAKYQELN--------- 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 160 akpgqeirqrTAAQRNLSPAPASSSQGPppqgpvspgpakdasapggppertvapalprrlgspatsvpgmgLHPpgppl 239
Cdd:COG5415  148 ----------NLKTEKEKFKKESHVKKK--------------------------------------------EDS----- 168

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 240 arpilpreRGALDRIVEYLVGDGPQ---NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTR 306
Cdd:COG5415  169 --------DAWFDKVISVLAGGNELdlsPFKALICPQCHHHNGLYRLAEKPIIEFICPHCNHKNDEVKER 230
PHA03247 PHA03247
large tegument protein UL36; Provisional
 151-245 7.46e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 7.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  151 PPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGP----PERTVAPALPRRLGSPATS 226
Cdd:PHA03247 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPspwdPADPPAAVLAPAAALPPAA 2822

                          90       100
                  ....*....|....*....|....*
gi 568918337  227 VPGMGLHPP------GPPLARPILP 245
Cdd:PHA03247 2823 SPAGPLPPPtsaqptAPPPPPGPPP 2847
PHA03377 PHA03377
EBNA-3C; Provisional
 167-385 1.14e-04

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 44.66  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  167 RQRTAAQRNLSPAPASS-SQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGMGLHPPGPPLARPIL- 244
Cdd:PHA03377  546 RQKRATPPKVSPSDRGPpKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDm 625

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  245 --PRERGAL-DRIVEYLVGDGPQNRYAL--------ICQQCFSHNGMALKEefeyiafrcaycfflNPARKTR-PQAPRL 312
Cdd:PHA03377  626 apSVVRMFLrERLLEQSTGPKPKSFWEMragrdgsgIQQEPSSRRQPATQS---------------TPPRPSWlPSVFVL 690

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568918337  313 PEFSFEKRQAVEGS-----SSTGPTLLESVPSAEsqliedslEEQDVLDNSTEQRDDKIPVTEQTSQVIEKTSGPEEP 385
Cdd:PHA03377  691 PSVDAGRAQPSEEShlssmSPTQPISHEEQPRYE--------DPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQAP 760
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 156-252 2.62e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.07  E-value: 2.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 156 AAVTAKPGQEIRQRTAAQRNLSPAPaSSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGMGLHPP 235
Cdd:NF041121  16 GRAAAPPSPEGPAPTAASQPATPPP-PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVP 94

                         90       100       110
                 ....*....|....*....|....*....|.
gi 568918337 236 GP--------------PLARPILPRERGALD 252
Cdd:NF041121  95 APpalpnplelaralrPLKRRVPSPRRVELD 125
 
Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 250-300 1.04e-24

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 1.04e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568918337  250 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 300
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
COG5415 COG5415
Predicted integral membrane metal-binding protein [General function prediction only];
1-306 2.14e-15

Predicted integral membrane metal-binding protein [General function prediction only];


Pssm-ID: 227702 [Multi-domain]  Cd Length: 251  Bit Score: 75.41  E-value: 2.14e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337   1 MGGLFSRWRAKPSTVEvLENIDKEIQALEEFREKNQRLQKLWVGRLIIYSSILYLFTCLIVYLWYlpDEFTARLVMTLpF 80
Cdd:COG5415    1 MGSRFDKDFVTKYTAD-LSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLALSYIYWEY--HGYRPYLVITA-L 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  81 FAFPLIIWTLRTVLIFFFSKRTERNNEALDDLKSQKKKILEEVMEKETYKTAKLILERF-DPDSKKAKEFEppsagaavt 159
Cdd:COG5415   77 LLGSGSLYMFRWALTKLYEFRNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQKYsEELNAKYQELN--------- 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 160 akpgqeirqrTAAQRNLSPAPASSSQGPppqgpvspgpakdasapggppertvapalprrlgspatsvpgmgLHPpgppl 239
Cdd:COG5415  148 ----------NLKTEKEKFKKESHVKKK--------------------------------------------EDS----- 168

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 240 arpilpreRGALDRIVEYLVGDGPQ---NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTR 306
Cdd:COG5415  169 --------DAWFDKVISVLAGGNELdlsPFKALICPQCHHHNGLYRLAEKPIIEFICPHCNHKNDEVKER 230
PHA03247 PHA03247
large tegument protein UL36; Provisional
 151-245 7.46e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 7.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  151 PPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGP----PERTVAPALPRRLGSPATS 226
Cdd:PHA03247 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPspwdPADPPAAVLAPAAALPPAA 2822

                          90       100
                  ....*....|....*....|....*
gi 568918337  227 VPGMGLHPP------GPPLARPILP 245
Cdd:PHA03247 2823 SPAGPLPPPtsaqptAPPPPPGPPP 2847
PHA03377 PHA03377
EBNA-3C; Provisional
 167-385 1.14e-04

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 44.66  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  167 RQRTAAQRNLSPAPASS-SQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGMGLHPPGPPLARPIL- 244
Cdd:PHA03377  546 RQKRATPPKVSPSDRGPpKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDm 625

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  245 --PRERGAL-DRIVEYLVGDGPQNRYAL--------ICQQCFSHNGMALKEefeyiafrcaycfflNPARKTR-PQAPRL 312
Cdd:PHA03377  626 apSVVRMFLrERLLEQSTGPKPKSFWEMragrdgsgIQQEPSSRRQPATQS---------------TPPRPSWlPSVFVL 690

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568918337  313 PEFSFEKRQAVEGS-----SSTGPTLLESVPSAEsqliedslEEQDVLDNSTEQRDDKIPVTEQTSQVIEKTSGPEEP 385
Cdd:PHA03377  691 PSVDAGRAQPSEEShlssmSPTQPISHEEQPRYE--------DPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQAP 760
PHA03247 PHA03247
large tegument protein UL36; Provisional
 152-246 1.20e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 1.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  152 PSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALP-RRLGSP--ATSVP 228
Cdd:PHA03247 2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvRRRPPSrsPAAKP 2875

                          90
                  ....*....|....*...
gi 568918337  229 GMGLHPPGPPLARPILPR 246
Cdd:PHA03247 2876 AAPARPPVRRLARPAVSR 2893
PHA03201 PHA03201
uracil DNA glycosylase; Provisional
 174-261 1.57e-04

uracil DNA glycosylase; Provisional


Pssm-ID: 165468  Cd Length: 318  Bit Score: 43.34  E-value: 1.57e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 174 RNLSPAPASSSQGPPPQGPVSPGPAKDASAPG-------GPPERTVAPALPRR----------LGSPATSVPGMGLhpPG 236
Cdd:PHA03201   5 RSRSPSPPRRPSPPRPTPPRSPDASPEETPPSppgpgaePPPGRAAGPAAPRRrprgcpagvtFSSSAPPRPPLGL--DD 82

                         90       100
                 ....*....|....*....|....*
gi 568918337 237 PPLARPiLPRERGALDRIveYLVGD 261
Cdd:PHA03201  83 APAATP-PPLDWTEFRRR--FLVGD 104
PRK13729 PRK13729
conjugal transfer pilus assembly protein TraB; Provisional
 160-253 2.03e-04

conjugal transfer pilus assembly protein TraB; Provisional


Pssm-ID: 184281 [Multi-domain]  Cd Length: 475  Bit Score: 43.27  E-value: 2.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 160 AKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSP-----GPAKDASAPGGPPERTVAPAlprrlgSPATSVPGMGLHP 234
Cdd:PRK13729 107 EKLGQDNAALAEQVKALGANPVTATGEPVPQMPASPpgpegEPQPGNTPVSFPPQGSVAVP------PPTAFYPGNGVTP 180

                         90
                 ....*....|....*....
gi 568918337 235 PGPPLARPIlpRERGALDR 253
Cdd:PRK13729 181 PPQVTYQSV--PVPNRIQR 197
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 156-252 2.62e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.07  E-value: 2.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 156 AAVTAKPGQEIRQRTAAQRNLSPAPaSSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGMGLHPP 235
Cdd:NF041121  16 GRAAAPPSPEGPAPTAASQPATPPP-PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVP 94

                         90       100       110
                 ....*....|....*....|....*....|.
gi 568918337 236 GP--------------PLARPILPRERGALD 252
Cdd:NF041121  95 APpalpnplelaralrPLKRRVPSPRRVELD 125
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 151-353 3.64e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 42.74  E-value: 3.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 151 PPSAGAAVTAKPGQEIRQRTAAQRNLSP---APASS--SQGPPPQGP---VSPGPAKDASAPGGPP---ERTVAPALPRR 219
Cdd:PRK14959 389 PASGGAATIPTPGTQGPQGTAPAAGMTPssaAPATPapSAAPSPRVPwddAPPAPPRSGIPPRPAPrmpEASPVPGAPDS 468

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 220 LGSPATSVPGMGlHPPGPPLARPILPRergALDRIVEYLVG-DGPQNRYALICQQCFSHNG-----MALKEEFEY----- 288
Cdd:PRK14959 469 VASASDAPPTLG-DPSDTAEHTPSGPR---TWDGFLEFCQGrNGQGGRLATVLRQATPEHAdgrlrLATMSSVQYerltd 544

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 289 ------IAFRCAYCF-------FLNPARKT------RPQAPRLPEFSFEKRQavegsssTGPTLLESVPSAESQLIEDSL 349
Cdd:PRK14959 545 aatettLAGLVRDYFgdacrveVLPPTRVRrteaelRKEAEAHPAVQLLKEE-------MGACILKCTPLADLRRPEDTT 617


                 ....
gi 568918337 350 EEQD 353
Cdd:PRK14959 618 EQGD 621
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
151-260 1.06e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.30  E-value: 1.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 151 PPSAGAAVTAKPGQEIRQRTAAQrnlsPAPASSSQGPPPQGPVSPGPAKDASAPG-GPPERTVAPALPRRlgspatSVPG 229
Cdd:PRK14971 391 QPSAAAAASPSPSQSSAAAQPSA----PQSATQPAGTPPTVSVDPPAAVPVNPPStAPQAVRPAQFKEEK------KIPV 460

                         90       100       110
                 ....*....|....*....|....*....|.
gi 568918337 230 MGLHPPGPPLARPILPRERGALDRIVEYLVG 260
Cdd:PRK14971 461 SKVSSLGPSTLRPIQEKAEQATGNIKEAPTG 491
PHA03247 PHA03247
large tegument protein UL36; Provisional
 151-245 1.22e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  151 PPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGP-PPQGPVSP-GPAKDASAPGGPPERTVAPALP--RRLGSPATS 226
Cdd:PHA03247 2813 APAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSlPLGGSVAPgGDVRRRPPSRSPAAKPAAPARPpvRRLARPAVS 2892

                          90
                  ....*....|....*....
gi 568918337  227 VPGMGLHPPGPPLARPILP 245
Cdd:PHA03247 2893 RSTESFALPPDQPERPPQP 2911
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 161-242 1.53e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 40.23  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 161 KPGQEIRQRTAAQRNLSPAPASSSQGP--PPQGPVSPGPAKD--ASAPGGPPerTVAPALPRRLGSPATSV------PGM 230
Cdd:PHA02682  67 KANSACMQRPSGQSPLAPSPACAAPAPacPACAPAAPAPAVTcpAPAPACPP--ATAPTCPPPAVCPAPARpapacpPST 144

                         90
                 ....*....|..
gi 568918337 231 GLHPPGPPLARP 242
Cdd:PHA02682 145 RQCPPAPPLPTP 156
PHA03247 PHA03247
large tegument protein UL36; Provisional
 141-252 1.67e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  141 PDSKKAKEFEPPSAGAAVTAKPGqeirqrtaaqrnlsPAPASSSQGPPPQGPVSPGPAKDASAPGGP-----PERTVAPA 215
Cdd:PHA03247 2702 PPPPPTPEPAPHALVSATPLPPG--------------PAAARQASPALPAAPAPPAVPAGPATPGGParparPPTTAGPP 2767

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 568918337  216 LPRRLGSPATSVPGMGLHPPGPPL--ARPILPRERGALD 252
Cdd:PHA03247 2768 APAPPAAPAAGPPRRLTRPAVASLseSRESLPSPWDPAD 2806
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 151-249 1.71e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 1.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 151 PPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGM 230
Cdd:PRK14951 396 QAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475

                         90
                 ....*....|....*....
gi 568918337 231 GLHPPGPPLARPILPRERG 249
Cdd:PRK14951 476 APAPAAAPAAARLTPTEEG 494
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 141-248 2.06e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 40.37  E-value: 2.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 141 PDSKKAKEFE-PPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPakDASAPGGPPERTVAPALPRR 219
Cdd:PHA03264 256 PYFEESKGYEpPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGR--DGAAGGEPKPGPPRPAPDAD 333

                         90       100
                 ....*....|....*....|....*....
gi 568918337 220 LGSPATSVPGMGLHPPGPplARPILPRER 248
Cdd:PHA03264 334 RPEGWPSLEAITFPPPTP--ATPAVPRAR 360
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
141-235 2.19e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 2.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 141 PDSKKAKEFEPPSAGAAVTAKPGQEirqRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRL 220
Cdd:PRK12323 407 AAAPAAAAAARAVAAAPARRSPAPE---ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA 483

                         90
                 ....*....|....*
gi 568918337 221 GSPATSVPGMGLHPP 235
Cdd:PRK12323 484 APAAAPAPADDDPPP 498
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 95-235 2.23e-03

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 39.82  E-value: 2.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  95 IFFFSKRTERNNEALDDLKSQkkkiLEEVMEKETYKTAKLIlerfDPDSKKAKE---FEPPSAGAAVTAKPGQE------ 165
Cdd:PLN02983  35 ISFPSKGPNPKRSAVPKVKAQ----LNEVAVDGSSNSAKSD----DPKSEVAPSepkDEPPSNSSSKPNLPDEEsisefm 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 166 ----------------------------IRQRTAAQRNLSPAPASSSQGPPPQG--PVSPGPAKDASAPGGPPERTvAPA 215
Cdd:PLN02983 107 tqvsslvklvdsrdivelqlkqldcelvIRKKEALPQPPPPAPVVMMQPPPPHAmpPASPPAAQPAPSAPASSPPP-TPA 185

                        170       180
                 ....*....|....*....|
gi 568918337 216 LPRRLGSPATSvpgmglHPP 235
Cdd:PLN02983 186 SPPPAKAPKSS------HPP 199
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 151-242 2.75e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 2.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 151 PPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGM 230
Cdd:PRK07764 399 PSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTA 478

                         90
                 ....*....|..
gi 568918337 231 GLHPPGPPLARP 242
Cdd:PRK07764 479 APAPAPPAAPAP 490
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 150-247 2.75e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.15  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  150 EPPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPA----- 224
Cdd:PHA03307   79 APANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPaagas 158

                          90       100
                  ....*....|....*....|....
gi 568918337  225 -TSVPGMGLHPPGPPLARPILPRE 247
Cdd:PHA03307  159 pAAVASDAASSRQAALPLSSPEET 182
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 150-242 3.56e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 3.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 150 EPPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRrlGSPATSVPG 229
Cdd:PRK07764 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAV--PDASDGGDG 668

                         90
                 ....*....|...
gi 568918337 230 MGLHPPGPPLARP 242
Cdd:PRK07764 669 WPAKAGGAAPAAP 681
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 137-257 4.61e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.49  E-value: 4.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  137 ERF--DPDS--KKAKEF------EPPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGG 206
Cdd:PRK12270   16 QQYlaDPNSvdPSWREFfadygpGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA 95

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568918337  207 PPERTVAPALPrrlgspatsvpgmglhPPGPPLARPILPRERGALDRIVEY 257
Cdd:PRK12270   96 PAAPPAAAAAA----------------APAAAAVEDEVTPLRGAAAAVAKN 130
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 146-268 5.16e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.20  E-value: 5.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 146 AKEFEPPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPAT 225
Cdd:PRK07764 642 APAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQP 721

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 568918337 226 SVPGMGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQNRYA 268
Cdd:PRK07764 722 PQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP 764
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 151-242 5.57e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.20  E-value: 5.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 151 PPSAGAAVTAKPGQEIRQRTAAQrnlsPAPASSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGM 230
Cdd:PRK07764 412 PAAAAPAAAAAPAPAAAPQPAPA----PAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAA 487

                         90
                 ....*....|..
gi 568918337 231 GLHPPGPPLARP 242
Cdd:PRK07764 488 PAPAAAPAAPAA 499
PHA03247 PHA03247
large tegument protein UL36; Provisional
 151-245 5.65e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 5.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  151 PPSAGAAVTAK------PGQEIRQRT-AAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSP 223
Cdd:PHA03247 2575 PRPSEPAVTSRarrpdaPPQSARPRApVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRD 2654

                          90       100
                  ....*....|....*....|..
gi 568918337  224 ATSVPGMGLHPPGPPLARPILP 245
Cdd:PHA03247 2655 DPAPGRVSRPRRARRLGRAAQA 2676
PHA03247 PHA03247
large tegument protein UL36; Provisional
 141-245 6.27e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 6.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  141 PDSKKAKEFEPPSAGAAVT---------AKPGQEIRQRTAAQRNLSPAPASSSQGP-PPQGPVSPGPAKDASAPGGPPER 210
Cdd:PHA03247 2628 PPSPSPAANEPDPHPPPTVppperprddPAPGRVSRPRRARRLGRAAQASSPPQRPrRRAARPTVGSLTSLADPPPPPPT 2707

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 568918337  211 TVAPALPRRLGSPATSVPGMGLHPPGPPLARPILP 245
Cdd:PHA03247 2708 PEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
151-250 6.28e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 38.70  E-value: 6.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 151 PPSAGAAVTAKPgqeiRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPG--GPPERTVAPALPRRLGSPATSVP 228
Cdd:PRK12323 374 PATAAAAPVAQP----APAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPArrSPAPEALAAARQASARGPGGAPA 449

                         90       100
                 ....*....|....*....|...
gi 568918337 229 GMGLHPPGP-PLARPILPRERGA 250
Cdd:PRK12323 450 PAPAPAAAPaAAARPAAAGPRPV 472
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 152-243 8.13e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 38.45  E-value: 8.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 152 PSAGAAVTAKPGQEirqrtAAQRNLSPAPASSSQGPPPQ-GPVSPGPAKDASAPGGPPErtvAPALPRRLGSPATsvpgm 230
Cdd:PHA03264 287 PEPGPVEDGAPGRE-----TGGEGEGPEPAGRDGAAGGEpKPGPPRPAPDADRPEGWPS---LEAITFPPPTPAT----- 353

                         90
                 ....*....|...
gi 568918337 231 glhpPGPPLARPI 243
Cdd:PHA03264 354 ----PAVPRARPV 362
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
154-241 9.70e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 38.29  E-value: 9.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337 154 AGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQ--GPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGMG 231
Cdd:PRK07003 398 AVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPAtaDRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA 477

                         90
                 ....*....|..
gi 568918337 232 LHPPG--PPLAR 241
Cdd:PRK07003 478 SAPASdaPPDAA 489
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 141-253 9.90e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 38.23  E-value: 9.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918337  141 PDSKKAKEFEPPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPP------------QGPVSPGPAKDASAPGGPP 208
Cdd:PHA03307   80 PANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPspapdlsemlrpVGSPGPPPAASPPAAGASP 159

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 568918337  209 ERTVAPALPRRLGSPATSVPGMGLHPPGPPLARPILPRERGALDR 253
Cdd:PHA03307  160 AAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASP 204
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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