|
Name |
Accession |
Description |
Interval |
E-value |
| CCDC144C |
pfam14915 |
CCDC144C protein coiled-coil region; This family includes the human protein CCDC144C and the ... |
403-706 |
8.71e-144 |
|
CCDC144C protein coiled-coil region; This family includes the human protein CCDC144C and the ankyrin repeat domain-containing protein 26-like 1 found in eukaryotes. Its function remains unknown, however, it is known to contain a coiled-coil domain which corresponds to this region. The ankyrin repeat which features in this protein is a common amino acid motif.
Pssm-ID: 464371 [Multi-domain] Cd Length: 304 Bit Score: 435.96 E-value: 8.71e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 403 NQRLQDEVAVLRLEMDTIKSHNQEKEKRYLEDIKIANEKNDNLQRMVKLNEETFTKTIFQYTGQLNSLKAENTMLSSKLD 482
Cdd:pfam14915 1 NCMLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKTLKLNEETLTKTVFQYNGQLNVLKAENTMLNSKLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 483 NEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVKDKMNFDMSNLRDNNEVLSQQLSKTERKL 562
Cdd:pfam14915 81 NEKQNKERLETEVESYRSRLAAAIQDHEQSQTSKRDLELAFQRERDEWLRLQDKMNFDVSNLRDENEILSQQLSKAESKA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 563 NSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDA 642
Cdd:pfam14915 161 NSLENELHRTRDALREKTLLLESVQRDLSQAQCQKKELEHMYQNEQDKVNKYIGKQESLEERLAQLQSENMLLRQQLEDA 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568941656 643 ANKAESKDKTIVNIQDQFQDVLTRFQAESQRHSLRLEDRNQELVSECSHLRERLCQYENEKAER 706
Cdd:pfam14915 241 QNKADAKEKTVIDIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKEKAER 304
|
|
| DUF3496 |
pfam12001 |
Domain of unknown function (DUF3496); This presumed domain is functionally uncharacterized. ... |
1012-1119 |
1.24e-48 |
|
Domain of unknown function (DUF3496); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Pssm-ID: 463425 [Multi-domain] Cd Length: 109 Bit Score: 168.31 E-value: 1.24e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 1012 RSQMELRIKDLESQLYRMKA-QEDFDKIELEKYKQLYQEEFRARKSLSSKLNKTSEKLEEASSKLLLEEQQNRSLLSTLS 1090
Cdd:pfam12001 1 RSQMELRIKDLESELSKMKTsQEDSNKIELEKYKQLYLEELKVRKSLSNKLNKTNERLAEVSTKLLVEKQQNRSLLSTLT 80
|
90 100
....*....|....*....|....*....
gi 568941656 1091 TRPVVECPCVGSFHNSLVFNRTLIPRENI 1119
Cdd:pfam12001 81 TRPVLESPCVGNLNNSLVLNRNFIPRENL 109
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
229-1076 |
4.49e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.05 E-value: 4.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 229 ELKRSHCELLTGKLKRMENKYKGLQKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQLSEKTSEQLRRK 308
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 309 GEQCQSEVEARQQLEASLRTLEMELKTVKSHLNQVLEERNETQRQLSREQNarmlqdgilashLCKQKEIEMTQKKMTSE 388
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE------------ELESLEAELEELEAELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 389 VSVSHEKEKDLLHknQRLQDEVAVLRLEMDTIKSHNQEKEKRyledIKIANEKNDNLQRMVKLNEETFTKTIFQYT-GQL 467
Cdd:TIGR02168 369 ELESRLEELEEQL--ETLRSKVAQLELQIASLNNEIERLEAR----LERLEDRRERLQQEIEELLKKLEEAELKELqAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 468 NSLKAENTMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVKDKMNfDMSNLRDN 547
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK-NQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 548 NEVLSQQLSKTERKLNSLEIefhhtkdELREKTLALkhAQRDLSQtqcQMKEVEHMFQDEQGKVSKFMGKQesieERLAQ 627
Cdd:TIGR02168 522 LGVLSELISVDEGYEAAIEA-------ALGGRLQAV--VVENLNA---AKKAIAFLKQNELGRVTFLPLDS----IKGTE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 628 LQSENTLLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRF-------QAESQRHSLRLEDRnqeLVSECSHLRERLCQYE 700
Cdd:TIGR02168 586 IQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvddldNALELAKKLRPGYR---IVTLDGDLVRPGGVIT 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 701 NEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHL 780
Cdd:TIGR02168 663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 781 QKLELEKSKFEITIKKQSEEIDQLQENLsrvnlsEEDKEKLQKLTELKESLECTVDQEQKRSSALEKELAEFKEVLKMTK 860
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERL------EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 861 KELNEYENRELNLRQDIknnhlemdipvSTLIKKIDDLTAKLETASskcLHLGKKNQLLQQELLLMRTIQKKCGKLEKNK 940
Cdd:TIGR02168 817 EEAANLRERLESLERRI-----------AATERRLEDLEEQIEELS---EDIESLAAEIEELEELIEELESELEALLNER 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 941 KQLEQEVVNLRSHMEKNMVEHSQAQQYAREvEERARQDLVEKLKQVNLFLQ-AQAASQESLEQLRENSNASVRSQMELRI 1019
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSE-LRRELEELREKLAQLELRLEgLEVRIDNLQERLSEEYSLTLEEAEALEN 961
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568941656 1020 KDLESQlyrMKAQEDFDKIElEKYKQL------YQEEFRARKSLSSKLNKTSEKLEEASSKLL 1076
Cdd:TIGR02168 962 KIEDDE---EEARRRLKRLE-NKIKELgpvnlaAIEEYEELKERYDFLTAQKEDLTEAKETLE 1020
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
573-1083 |
2.64e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 2.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 573 KDELREKTLALKHAQRDLSQTQCQMKEVEHmfQDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAANKAESKDKT 652
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAEL--EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 653 IVNIQDQFQDVLTRFQAESQRhSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLE 732
Cdd:COG1196 297 LARLEQDIARLEERRRELEER-LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 733 VSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRvn 812
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE-- 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 813 LSEEDKEKLQKLTELKESLEctvdQEQKRSSALEKELAEFKEVLKMTKKELNEYENRELN-LRQDIKNNHLEMDIPVSTL 891
Cdd:COG1196 454 LEEEEEALLELLAELLEEAA----LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 892 IKKIDDLTAKLETASS---------------KCLHLGKKNQLLQQELLLMRTIQkkcgKLEKNKKQLEQEVVNLRSHMEK 956
Cdd:COG1196 530 IGVEAAYEAALEAALAaalqnivveddevaaAAIEYLKAAKAGRATFLPLDKIR----ARAALAAALARGAIGAAVDLVA 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 957 NMVEHSQAQQYAREVEERARQDLVEKLKQVNLFLQAQAASQESLEQLRENSNASVRSQMELRIKDLESQLYRMKAQEDFD 1036
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568941656 1037 KIELEKYKQLYQEEFRARKSLSSKLNKTSEKLEEASSKLLLEEQQNR 1083
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
545-905 |
6.50e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 6.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 545 RDNNEVLSQQLSKTERKLNSLE------IEFHHTKDELREKTLAL-----KHAQRDLSQTQCQMKEVEHMFQDEQGKVSK 613
Cdd:TIGR02168 185 RENLDRLEDILNELERQLKSLErqaekaERYKELKAELRELELALlvlrlEELREELEELQEELKEAEEELEELTAELQE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 614 FMGKQESIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNIQDQFQdvltrfqaesqrhslRLEDRNQELVSECSHLR 693
Cdd:TIGR02168 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA---------------NLERQLEELEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 694 ERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREavhha 773
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER----- 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 774 ekMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLTEL------KESLECTVDQEQKRSSALEK 847
Cdd:TIGR02168 405 --LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELerleeaLEELREELEEAEQALDAAER 482
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 848 ELAEFKEVLKMTKKELNEYENRELNLRQDIKNNHLEMDI--PVSTLIKKIDDLTAKLETA 905
Cdd:TIGR02168 483 ELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIlgVLSELISVDEGYEAAIEAA 542
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
224-851 |
2.21e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 2.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 224 YKRL-IELKRSHCELLTGKLKRMENKYKGLQKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQLSEKTS 302
Cdd:COG1196 215 YRELkEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 303 EQLRRKGEQCQSEVEARQQLEASLRTLEMELKTVKSHLNQVLEERNETQRQLSREQNARMLqdgilashlcKQKEIEMTQ 382
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE----------AEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 383 KKMTSEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMDTIKSHNQEKEKRYLEDIKIANEKNDNLQRMVKLNEEtftktifq 462
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE-------- 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 463 ytgqlnsLKAENTMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEwfrvkdkmnfdmS 542
Cdd:COG1196 437 -------EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL------------L 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 543 NLRDNNEVLSQQLSKTERKLNSLEIefHHTKDELREKTLALKHAQRDLSQTQCQMKEVEhmfQDEQGKvskfmgkqESIE 622
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAGLRGL--AGAVAVLIGVEAAYEAALEAALAAALQNIVVE---DDEVAA--------AAIE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 623 ERLAQLQSENTLLrqqlddAANKAESKDKTIVNIQDQFQDVLTRFQAESQRHSLRLEDRNQELVSECSHLRERLCQYENE 702
Cdd:COG1196 565 YLKAAKAGRATFL------PLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 703 KAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQK 782
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568941656 783 LELEKSKFEITIKKQSEEIDQLQEnlsrvnlsEEDKEKLQKLTELKESLEcTVDQEQKRSSALEKELAE 851
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELL--------EEEELLEEEALEELPEPP-DLEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
610-977 |
3.76e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 3.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 610 KVSKFMGKQESIEERLAQLQSENTLLRQQLDDAANKAESKDKtivniqdqFQDVLTRFQaesqrhslrlEDRNQELVSEC 689
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER--------YQALLKEKR----------EYEGYELLKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 690 SHLRERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASL-EVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHRE 768
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLeELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 769 AVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDqlQENLSRVNLSEEDKEKLQKLTELKESLEctvdQEQKRSSALEKE 848
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIE--EERKRRDKLTEEYAELKEELEDLRAELE----EVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 849 LAEFKEVLKMTKKELNEYeNRELNLRQDIKNNhlemdipvstLIKKIDDLTAKLETAsskclhLGKKNQLLQQELLLMRT 928
Cdd:TIGR02169 387 LKDYREKLEKLKREINEL-KRELDRLQEELQR----------LSEELADLNAAIAGI------EAKINELEEEKEDKALE 449
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 568941656 929 IQKKCGKLEKNKKQL---EQEVVNLRSHMEKNMVEHSQAQQYAREVEERARQ 977
Cdd:TIGR02169 450 IKKQEWKLEQLAADLskyEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
257-761 |
1.46e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 65.97 E-value: 1.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 257 SETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQLSEKTSEQLRRKGEQCQSEVEARQQLEASLRTLEMELKTV 336
Cdd:pfam01576 57 AEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 337 KSHLNqVLEERNEtqrQLSREQNARMLQDGILASHLCKQKE--IEMTQKKMTSEVSVSHEKEKDLLHKNQRLQDEVAVLR 414
Cdd:pfam01576 137 EEDIL-LLEDQNS---KLSKERKLLEERISEFTSNLAEEEEkaKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRK 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 415 LEMDTIKSHNQEKE-KRYLEDIKIAN-EKNDNLQR-MVKLNEETFTKTIFQytGQLNSLKAENTMLSSKLDNEKQNKER- 490
Cdd:pfam01576 213 LEGESTDLQEQIAElQAQIAELRAQLaKKEEELQAaLARLEEETAQKNNAL--KKIRELEAQISELQEDLESERAARNKa 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 491 ------LETDVESFRSRLASALHDHAEIQT--AKRDLEIA-FQRARDEWFRVKDKMNFDMSNLRDNN-EVLSQQLSKTER 560
Cdd:pfam01576 291 ekqrrdLGEELEALKTELEDTLDTTAAQQElrSKREQEVTeLKKALEEETRSHEAQLQEMRQKHTQAlEELTEQLEQAKR 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 561 KLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLD 640
Cdd:pfam01576 371 NKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLN 450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 641 DAANKAESKDKTIVNIQDQFQDVLTRFQAESqRHSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADT 720
Cdd:pfam01576 451 EAEGKNIKLSKDVSSLESQLQDTQELLQEET-RQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDM 529
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 568941656 721 LKKQSMSEASLEVssryrsnLEEEARDLKKKLGQLRSQLQE 761
Cdd:pfam01576 530 KKKLEEDAGTLEA-------LEEGKKRLQRELEALTQQLEE 563
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
290-854 |
1.99e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 1.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 290 KRRSADQLSEKTSEQLRRKGEQCQSEVEARQQLEASLRTLEMELKTVKSHLNQVLEERNETQRQLSREQNARMLQDGila 369
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE--- 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 370 shlcKQKEIEMTQKKMTSEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMDTIKSHNQEKEKRYLEDIKIANEKNDNLQRmv 449
Cdd:COG1196 310 ----RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE-- 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 450 klneetFTKTIFQYTGQLNSLKAENTMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDE 529
Cdd:COG1196 384 ------LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 530 wfrvkdkmnfdmsnlRDNNEVLSQQLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHmfQDEQG 609
Cdd:COG1196 458 ---------------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL--LAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 610 KVSKFMGKQESIEERLAQLQsENTLLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQAES-QRHSLRLEDRNQELVSE 688
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAAL-EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKiRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 689 CSHLRERLCQYENEKAER---EVVVRQLQQELADTLKKQSMS------EASLEVSSRYRSNLEEEARDLKKKLGQLRSQL 759
Cdd:COG1196 600 AVDLVASDLREADARYYVlgdTLLGRTLVAARLEAALRRAVTlagrlrEVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 760 QEARDQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLTELKESLECTVDQEQ 839
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
570
....*....|....*
gi 568941656 840 KRSSALEKELAEFKE 854
Cdd:COG1196 760 PDLEELERELERLER 774
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
618-1024 |
2.76e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.68 E-value: 2.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 618 QESIEERLAQLQSENTLLRQQLDDAANKAESKDKtivniqdqfqdvltrfQAESQRHS-LRLEDRNQELVSECSHLRERL 696
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNE----------------EAESLREDaDDLEERAEELREEAAELESEL 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 697 CQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREA------- 769
Cdd:PRK02224 373 EEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAealleag 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 770 --------------VHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLTELKESLECTV 835
Cdd:PRK02224 453 kcpecgqpvegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETI 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 836 DQEQKRSSALEKELAEFKEVLKMTKKELNEYENR---------ELNLRQDIKNNHLEMDIPVSTLIKKIDDLTAKLETAS 906
Cdd:PRK02224 533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEaeeareevaELNSKLAELKERIESLERIRTLLAAIADAEDEIERLR 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 907 SKCLHLGKKNQLLQQELLLMRTiqkkcgklekNKKQLEQEVVNLRshMEKNMVEHSQAQQYAREVEERARQdLVEKLKQV 986
Cdd:PRK02224 613 EKREALAELNDERRERLAEKRE----------RKRELEAEFDEAR--IEEAREDKERAEEYLEQVEEKLDE-LREERDDL 679
|
410 420 430
....*....|....*....|....*....|....*...
gi 568941656 987 NLFLQAQAASQESLEQLRENsnasvRSQMELRIKDLES 1024
Cdd:PRK02224 680 QAEIGAVENELEELEELRER-----REALENRVEALEA 712
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
499-846 |
2.80e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 2.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 499 RSRLASALHDHAEIQTAKRDLEIAFQRardewfrvKDKMNFDMSNLRDNNEVLSQQLSKTERKLNSLEIEFHHTKDELRE 578
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSE--------LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 579 KTLALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQlqsentllrQQLDDAANKAESKDKTIVNIQD 658
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH---------SRIPEIQAELSKLEEEVSRIEA 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 659 QFQDVLTRFQAESQRHSLrLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYR 738
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEY-LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 739 SNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLE------LEKSKFEITIKKQSEEIDQLQENLSR-- 810
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEdpkgedEEIPEEELSLEDVQAELQRVEEEIRAle 971
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 568941656 811 -VNLSEED------------KEKLQKLTELKESLECTVDQ--EQKRSSALE 846
Cdd:TIGR02169 972 pVNMLAIQeyeevlkrldelKEKRAKLEEERKAILERIEEyeKKKREVFME 1022
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
376-903 |
3.10e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 376 KEIEMTQKKMTSEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMDTI-KSHNQEKEKRYLEDIKIANEKNDNLQRMVKLNEE 454
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELeLELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 455 TftktifqytGQLNSLKAENTMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVK 534
Cdd:COG1196 315 E---------ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 535 DkmnfDMSNLRDNNEVLSQQLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKF 614
Cdd:COG1196 386 E----ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 615 MGKQESIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQAESQRHSLRLEDRNQELVSEC-SHLR 693
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYeAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 694 ERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSN---------------LEEEARDLKKKLGQLRSQ 758
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALaaalargaigaavdlVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 759 LQEARDQHREAVHHAEKMEDHLQKLE-------------LEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLT 825
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLRevtlegeggsaggSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568941656 826 ELKESLECTVDQEQKRSSALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKNNHLEMDIpvSTLIKKIDDLTAKLE 903
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL--EELERELERLEREIE 777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
241-1078 |
2.12e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 2.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 241 KLKRMENKYKGLQKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQLSEKTSEQLRRKGEQCQSEVEAR- 319
Cdd:TIGR02169 217 LKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKi 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 320 QQLEASLRTLEMELKTVKSHLNQVLEERNETQRQLSReqnarmlqdgilashlcKQKEIEMTQKKMTSEvsvshEKEKDl 399
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK-----------------LLAEIEELEREIEEE-----RKRRD- 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 400 lhknqRLQDEVAVLRLEMDTIKSHNQEKEKRYlediKIANEKNDNLQrmvklneetftKTIFQYTGQLNSLKAEntmlss 479
Cdd:TIGR02169 354 -----KLTEEYAELKEELEDLRAELEEVDKEF----AETRDELKDYR-----------EKLEKLKREINELKRE------ 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 480 kLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVKDKMnfdmsnlrdnnEVLSQQLSKTE 559
Cdd:TIGR02169 408 -LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-----------SKYEQELYDLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 560 RKLNSLEIEFHhtkdELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEER--------------- 624
Cdd:TIGR02169 476 EEYDRVEKELS----KLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERyataievaagnrlnn 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 625 -------------------------------LAQLQSENTLLRQQ--LDDAANKAESKDKTIVNIQDQFQDVLTRFQAES 671
Cdd:TIGR02169 552 vvveddavakeaiellkrrkagratflplnkMRDERRDLSILSEDgvIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEA 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 672 QRH---SLRLEDRNQELVSECSHL----RERLCQYENEKAEREVVvrqlqQELADTLKKQSMSEASLEVSSRYRSNLEEE 744
Cdd:TIGR02169 632 ARRlmgKYRMVTLEGELFEKSGAMtggsRAPRGGILFSRSEPAEL-----QRLRERLEGLKRELSSLQSELRRIENRLDE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 745 AR----DLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEED--- 817
Cdd:TIGR02169 707 LSqelsDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlea 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 818 ---KEKLQKLTELKESLECTVDQEQKRSSALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKNNHLEMDipvsTLIKK 894
Cdd:TIGR02169 787 rlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE----NLNGK 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 895 IDDLTAKLETASSKCLHLGKKNQLLQQELLLMrtiQKKCGKLEKNKKQLEQEVVNLRSHMEKNMVEHSQAQQYAREVEER 974
Cdd:TIGR02169 863 KEELEEELEELEAALRDLESRLGDLKKERDEL---EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDP 939
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 975 ARQDL--------VEKLKQVNLFLQAQAASQESLEQLRENSNASVrsqmELRIKDLESQLYRMKAQEDFDKIELEKYKQL 1046
Cdd:TIGR02169 940 KGEDEeipeeelsLEDVQAELQRVEEEIRALEPVNMLAIQEYEEV----LKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
890 900 910
....*....|....*....|....*....|...
gi 568941656 1047 YQEEF-RARKSLSSKLNKTSEKLEEASSKLLLE 1078
Cdd:TIGR02169 1016 KREVFmEAFEAINENFNEIFAELSGGTGELILE 1048
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
238-877 |
1.19e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 238 LTGKLKRM-ENKYKGLQKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRS----ADQLSEKTSEQLRRKgEQC 312
Cdd:TIGR02169 277 LNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKllaeIEELEREIEEERKRR-DKL 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 313 QSEVEAR-----------QQLEASLRTLEMELKTVKSHLNQVLEERNETQRQLSREQNARMLQDGILASHLCKQKEIEMT 381
Cdd:TIGR02169 356 TEEYAELkeeledlraelEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 382 QKKMTSEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMDTIKSHNQEKEKRY---------LEDIKIANEKNDNLQRMVKLN 452
Cdd:TIGR02169 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELsklqrelaeAEAQARASEERVRGGRAVEEV 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 453 EETFTKTIFQYTGQLNSLKAE----------NTMLSSKLDNEKQNKERLE---------------TDVESFRsRLASALH 507
Cdd:TIGR02169 516 LKASIQGVHGTVAQLGSVGERyataievaagNRLNNVVVEDDAVAKEAIEllkrrkagratflplNKMRDER-RDLSILS 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 508 DHAEIQTAKRDLEIAFQRARDEWFRVKDKMNFD--------MSNLR--------------------------DNNEVLSQ 553
Cdd:TIGR02169 595 EDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEdieaarrlMGKYRmvtlegelfeksgamtggsraprggiLFSRSEPA 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 554 QLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQLQSENT 633
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 634 LLRQQLDDAANKAESKDKTIVNIQDQFQDVLTR----FQAESQRHSLRLEDRNQELVSECSHLRERLCQYENEKAEREVV 709
Cdd:TIGR02169 755 NVKSELKELEARIEELEEDLHKLEEALNDLEARlshsRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 710 VRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLELEKSK 789
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 790 FEITIKKQSEEIDQLQENLSRVN-------------LSEED-KEKLQKLTELKESLE---CTVDQEQKRSSALEKELAEF 852
Cdd:TIGR02169 915 KRKRLSELKAKLEALEEELSEIEdpkgedeeipeeeLSLEDvQAELQRVEEEIRALEpvnMLAIQEYEEVLKRLDELKEK 994
|
730 740
....*....|....*....|....*
gi 568941656 853 KEVLKMTKKELNEYENRELNLRQDI 877
Cdd:TIGR02169 995 RAKLEEERKAILERIEEYEKKKREV 1019
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
511-1091 |
2.00e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 59.08 E-value: 2.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 511 EIQTAKRDLEIAFQRARDEWFRVKDKMNFDMSNLRdnnevlsQQLSKTERKLNSLEiEFHHTKDELREKTLALKHAQRDL 590
Cdd:pfam12128 280 ERQETSAELNQLLRTLDDQWKEKRDELNGELSAAD-------AAVAKDRSELEALE-DQHGAFLDADIETAAADQEQLPS 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 591 SQTQCQMKEVEH-MFQDEQGKVskfmgkQESIEERLAQLQSEN-TLLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQ 668
Cdd:pfam12128 352 WQSELENLEERLkALTGKHQDV------TAKYNRRRSKIKEQNnRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELR 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 669 AESQRHSLRLEDRNQELVSECSHLRERL--CQYENE----KAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLE 742
Cdd:pfam12128 426 EQLEAGKLEFNEEEYRLKSRLGELKLRLnqATATPElllqLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQAS 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 743 EEARDLKKKLGQLRSQLQEARDQHREAVH--------HAEKMEDHLQKL---EL------------EKSKFEITIKKQSE 799
Cdd:pfam12128 506 EALRQASRRLEERQSALDELELQLFPQAGtllhflrkEAPDWEQSIGKVispELlhrtdldpevwdGSVGGELNLYGVKL 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 800 EIDQLQENlSRVNLSEEDKEKLQKLTElkeslecTVDQEQKRSSALEKELAEFKEVLKMTKKELNE----YENRELNLRQ 875
Cdd:pfam12128 586 DLKRIDVP-EWAASEEELRERLDKAEE-------ALQSAREKQAAAEEQLVQANGELEKASREETFartaLKNARLDLRR 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 876 diknnhlemdipvstlikkiddLTAKLETASSKClhlgkknqlLQQELLLMRTIQKKCGKLEKNKKQLEQEVVNLRSHME 955
Cdd:pfam12128 658 ----------------------LFDEKQSEKDKK---------NKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQK 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 956 KNMVEHSQAQQYAREVEERARQDLVEKLKQVNLFLQAQAASQES-LEQLRENSNAS------VRSQMELRIKDLESQLYR 1028
Cdd:pfam12128 707 EQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKaLETWYKRDLASlgvdpdVIAKLKREIRTLERKIER 786
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568941656 1029 MKAqedfDKIELEKYKQLYQEEFRARK-SLSSKLNKTSEKLEEASSKLLLEEQQNRSLLSTLST 1091
Cdd:pfam12128 787 IAV----RRQEVLRYFDWYQETWLQRRpRLATQLSNIERAISELQQQLARLIADTKLRRAKLEM 846
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
238-764 |
3.61e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.21 E-value: 3.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 238 LTGKLKRMENKYKGLQKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQLSEKTSEQLRRKGEQCQSEVE 317
Cdd:pfam15921 375 LDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQ 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 318 ARQQLEASLRTLEMELKTVKSHLNQVLEERneTQRQLSREQNARMLQDgILASHLCKQKEIEMTQKKMTSEVSVSHEKEK 397
Cdd:pfam15921 455 GKNESLEKVSSLTAQLESTKEMLRKVVEEL--TAKKMTLESSERTVSD-LTASLQEKERAIEATNAEITKLRSRVDLKLQ 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 398 DLLH-KNQrlQDEVAVLRLEMDTIKSHNQEKEKRyledIKIANEKNDNLQRMVKLNEETFTKTIF---QYTGQLNSLK-- 471
Cdd:pfam15921 532 ELQHlKNE--GDHLRNVQTECEALKLQMAEKDKV----IEILRQQIENMTQLVGQHGRTAGAMQVekaQLEKEINDRRle 605
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 472 -AENTMLSSKLDNEKQNKERLETDVESFRSRLASA----LHDHAEIQTAKRDLEIAFQRARDEWFRVKDKMNFDMSNLRD 546
Cdd:pfam15921 606 lQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAgserLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRN 685
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 547 NNEVLSQQLSKTERKLNSLEIEFHHTKDELR----------------EKTLALKHAQRDLSQTQCQMKEV--------EH 602
Cdd:pfam15921 686 KSEEMETTTNKLKMQLKSAQSELEQTRNTLKsmegsdghamkvamgmQKQITAKRGQIDALQSKIQFLEEamtnankeKH 765
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 603 MFQDEQGKVSKFMGKQESIEERLA-QLQSENTLLRQQLDDAANKAESKDKTIVNIQdQFQDVLTRFQAESQR----HSLR 677
Cdd:pfam15921 766 FLKEEKNKLSQELSTVATEKNKMAgELEVLRSQERRLKEKVANMEVALDKASLQFA-ECQDIIQRQEQESVRlklqHTLD 844
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 678 LEDRNQELVSECSHLRERLCQYENEKAEREVVVRQlqQELADTLKKQSMSEASLEvssryrsnlEEEARDLKKKLGQLRS 757
Cdd:pfam15921 845 VKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSS--QSTASFLSHHSRKTNALK---------EDPTRDLKQLLQELRS 913
|
....*..
gi 568941656 758 QLQEARD 764
Cdd:pfam15921 914 VINEEPT 920
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
617-1075 |
4.05e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 4.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 617 KQESIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQaesqrhslRLEDRNQELVSECSHLRERL 696
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREIN--------EISSELPELREELEKLEKEV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 697 CQYENEKAEREvvvrQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSqLQEARDQHREAVHHAEKM 776
Cdd:PRK03918 231 KELEELKEEIE----ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 777 EDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVN-LSEEDKEKLQKLTELKESLEC--TVDQEQKRSSALEKELAEfk 853
Cdd:PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEERLEeLKKKLKELEKRLEELEERHELyeEAKAKKEELERLKKRLTG-- 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 854 EVLKMTKKELNEYENRELNLRQDIKNnHLEMDIPVSTLIKKIDDLTAKLETASSKCLHLGK------KNQLLQQELLLMR 927
Cdd:PRK03918 384 LTPEKLEKELEELEKAKEEIEEEISK-ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRelteehRKELLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 928 TIQKKCGKLEKNKKQLEQEVVNLRSHMEK------------------------NMVEHSQAQQYAREVEERARQ------ 977
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKKeseliklkelaeqlkeleeklkkyNLEELEKKAEEYEKLKEKLIKlkgeik 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 978 DLVEKLKQVNLFLQAQAASQESLEQLRENSNASVRSQMELRIKDLESQLYRMKAQEDFDK--IELEKYKQLYQEEFRARK 1055
Cdd:PRK03918 543 SLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNeyLELKDAEKELEREEKELK 622
|
490 500
....*....|....*....|
gi 568941656 1056 SLSSKLNKTSEKLEEASSKL 1075
Cdd:PRK03918 623 KLEEELDKAFEELAETEKRL 642
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
284-945 |
6.89e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 57.29 E-value: 6.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 284 LKQEEEKRRSADQLSEKTSEQLRRKGEQcQSEVEARQQLEASLRTLEMELKTVKSHLNQVLEERNEtQRQLSReqnarml 363
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQKREA-QEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINR-ARKAAP------- 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 364 qdgiLASHLCKQKEIEMTQKKMTSEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMDTIKSHNQEKEKryledIKIANEKnD 443
Cdd:TIGR00618 295 ----LAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIH-----IRDAHEV-A 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 444 NLQRMVKLNEETFTKTIFQYTGQLNSLKAENTMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAF 523
Cdd:TIGR00618 365 TSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCA 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 524 QRARDEWFRVKDKmNFDMSNLRDNNEVLSQQLSKTE---RKLNSLEIEFHHTKDELREKTLALKHAQRDLSQ-------- 592
Cdd:TIGR00618 445 AAITCTAQCEKLE-KIHLQESAQSLKEREQQLQTKEqihLQETRKKAVVLARLLELQEEPCPLCGSCIHPNParqdidnp 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 593 --TQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQAE 670
Cdd:TIGR00618 524 gpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 671 SQ-RHSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEV------SSRYRSNLEE 743
Cdd:TIGR00618 604 SEaEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIrvlpkeLLASRQLALQ 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 744 EARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRvnlseEDKEKLQK 823
Cdd:TIGR00618 684 KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH-----QARTVLKA 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 824 LTELKESLECTVDQEQKRSSALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKNNHLEMDIPVSTLIKKIDDLTAKLE 903
Cdd:TIGR00618 759 RTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 568941656 904 TASSKclhlgkknqllqqelllMRTIQKKCGKLEKNKKQLEQ 945
Cdd:TIGR00618 839 EKSAT-----------------LGEITHQLLKYEECSKQLAQ 863
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
307-1032 |
2.02e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 307 RKGEQCQSEVEARQQLEASLRTLEMELKTVKSHLNQVLEERNETQRQLSREQNARMLQDGILASHLCKQKEIEMTQKKMT 386
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 387 SEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMDTIKSHNQE----------KEKRYLEDIKIANEKNDNLQRMVKLNEEtf 456
Cdd:pfam01576 82 SRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKlqlekvtteaKIKKLEEDILLLEDQNSKLSKERKLLEE-- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 457 tkTIFQYTGQLnslkAENTMLSSKLDNEKQNKERLETDVESFRSRLasalhdhaeiqtakrdleiafQRARDEWFRVKDK 536
Cdd:pfam01576 160 --RISEFTSNL----AEEEEKAKSLSKLKNKHEAMISDLEERLKKE---------------------EKGRQELEKAKRK 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 537 MNFDMSNLRDNNEVLSQQLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMG 616
Cdd:pfam01576 213 LEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEK 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 617 KQESIEERLAQLQSEntlLRQQLDDAANKAESKDKTivniQDQFQDVLTRFQAESQRHSLRLEDRNQELVSECSHLRERL 696
Cdd:pfam01576 293 QRRDLGEELEALKTE---LEDTLDTTAAQQELRSKR----EQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQL 365
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 697 CQYENEKAEREVVVRQLQQELADTlkkqsmsEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKM 776
Cdd:pfam01576 366 EQAKRNKANLEKAKQALESENAEL-------QAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKL 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 777 EDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVN--LSEEDKEKLQ------KLTELKESLECTVDQEQKRSSALEKE 848
Cdd:pfam01576 439 QSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQelLQEETRQKLNlstrlrQLEDERNSLQEQLEEEEEAKRNVERQ 518
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 849 LAEFKEVLKMTKKELNEYENRELNLRQDIKNnhlemdipvstLIKKIDDLTAKLETASSKCLHLGKKNQLLQQELLLMRT 928
Cdd:pfam01576 519 LSTLQAQLSDMKKKLEEDAGTLEALEEGKKR-----------LQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLV 587
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 929 IQKK----CGKLEKNKKQLEQEVVNLRSHMEKNMVEHSQAQQYAREVE------ERARQDLVEKLKQVNLFLQAQAASQE 998
Cdd:pfam01576 588 DLDHqrqlVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKEtralslARALEEALEAKEELERTNKQLRAEME 667
|
730 740 750
....*....|....*....|....*....|....
gi 568941656 999 SLEQLRENSNASVRsQMELRIKDLESQLYRMKAQ 1032
Cdd:pfam01576 668 DLVSSKDDVGKNVH-ELERSKRALEQQVEEMKTQ 700
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
242-903 |
2.76e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 2.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 242 LKRMENKYKGLQKEMSETEEVKsrlEHEKVGWEQELCRLRFALKQEEEKRrsaDQLSEktseqLRRKGEQCQSEVeaRQQ 321
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNELH---EKQKFYLRQSVIDLQTKLQEMQMER---DAMAD-----IRRRESQSQEDL--RNQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 322 LEASLRtlemELKTVKSHLNQVLEERNETQRQLSR---------EQNARMLQDGILASHLCKQKEIEMTQKKMTSEVSVS 392
Cdd:pfam15921 147 LQNTVH----ELEAAKCLKEDMLEDSNTQIEQLRKmmlshegvlQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAI 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 393 HEKEKDLLHKNQRLQDEVAVLRLEMDTIKSHNQEKEKRYLEdikianEKNDNLQRMVKLNE---ETFTKTIFQYTGQLNS 469
Cdd:pfam15921 223 SKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQ------QHQDRIEQLISEHEveiTGLTEKASSARSQANS 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 470 LKAENTMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAK-RDLEIAFQRARDEWFRVK---DKMNFDMSNLR 545
Cdd:pfam15921 297 IQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKiEELEKQLVLANSELTEARterDQFSQESGNLD 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 546 DNNEVLSQQLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQ----DEQGKVSKFM----GK 617
Cdd:pfam15921 377 DQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKamksECQGQMERQMaaiqGK 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 618 QESIEE---RLAQLQSENTLLRQQLDDAANKA---ESKDKTIVNIQDQFQDVLTRFQAESQRHSlRLEDRNQELVSECSH 691
Cdd:pfam15921 457 NESLEKvssLTAQLESTKEMLRKVVEELTAKKmtlESSERTVSDLTASLQEKERAIEATNAEIT-KLRSRVDLKLQELQH 535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 692 LRERLCQYENEKAEREVVVRQLQQEladtlkkqsmsEASLEVssryrsnLEEEARDLKKKLGQlrsqlqEARDQHREAVH 771
Cdd:pfam15921 536 LKNEGDHLRNVQTECEALKLQMAEK-----------DKVIEI-------LRQQIENMTQLVGQ------HGRTAGAMQVE 591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 772 HAEkMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLseedkEKLQKLTELKESLECTVDQEQKRSSALEKelae 851
Cdd:pfam15921 592 KAQ-LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLEL-----EKVKLVNAGSERLRAVKDIKQERDQLLNE---- 661
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 568941656 852 fkevLKMTKKELNEYENRELNLRQDIKNNHLEMDIPVSTLIKKIDDLTAKLE 903
Cdd:pfam15921 662 ----VKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELE 709
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
679-1090 |
5.93e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 5.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 679 EDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKklgqLRSQ 758
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE----LKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 759 LQEARDQhreavhhAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLTELKESLECTVDQE 838
Cdd:PRK03918 240 IEELEKE-------LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 839 QKRSSALEKELAEFKEVLK---MTKKELNEYENRELNLRQDIknNHLEMDIPVSTLIKKIDDLTAKLEtASSKCLHLGKK 915
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKeleEKEERLEELKKKLKELEKRL--EELEERHELYEEAKAKKEELERLK-KRLTGLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 916 NQLLQQELLLMRTIQKKCGKLEKNKKQLEQEVVNLRSHMEKNMVEHSQAQQYAREVEERARQDLVEK-LKQVNLFLQAQA 994
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEyTAELKRIEKELK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 995 ASQESLEQLREN-----------SNASVRSQMELRIKDLESQLyrmkaqEDFDKIELEKYKQLYQ---EEFRARKSLSSK 1060
Cdd:PRK03918 470 EIEEKERKLRKElrelekvlkkeSELIKLKELAEQLKELEEKL------KKYNLEELEKKAEEYEklkEKLIKLKGEIKS 543
|
410 420 430
....*....|....*....|....*....|
gi 568941656 1061 LNKTSEKLEEASSKLLLEEQQNRSLLSTLS 1090
Cdd:PRK03918 544 LKKELEKLEELKKKLAELEKKLDELEEELA 573
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
379-1075 |
1.02e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 379 EMTQKKMTSEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMDTIKSHNQEKEKRYLEDIKIANEKNDNLQRMVKLNEETFTK 458
Cdd:TIGR02169 215 ALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 459 TIFQYTGQLNSLK--------------AENTMLSSKLDNEKQNKERLETDVESFRSRLASALhdhAEIQTAKRDLEIAFQ 524
Cdd:TIGR02169 295 KIGELEAEIASLErsiaekereledaeERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT---EEYAELKEELEDLRA 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 525 RARDEwfrvkDKmnfDMSNLRDNNEVLSQQLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMF 604
Cdd:TIGR02169 372 ELEEV-----DK---EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 605 QDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNIQDQfQDVLTRFQAESQRHSLRLEDRNQE 684
Cdd:TIGR02169 444 EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ-ARASEERVRGGRAVEEVLKASIQG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 685 LVSECSHLRERLCQY----ENEKAER--EVVVRQ--LQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLR 756
Cdd:TIGR02169 523 VHGTVAQLGSVGERYataiEVAAGNRlnNVVVEDdaVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFA 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 757 SQLQEARDQHREAVHHA-------EKME---DHLQKLEL--------EKS-----------KFEITIKKQSEEIDQLQEN 807
Cdd:TIGR02169 603 VDLVEFDPKYEPAFKYVfgdtlvvEDIEaarRLMGKYRMvtlegelfEKSgamtggsraprGGILFSRSEPAELQRLRER 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 808 LSRVNLSEED-KEKLQKLTELKESLECTVDQEQKRSSALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKNNHLEMDi 886
Cdd:TIGR02169 683 LEGLKRELSSlQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK- 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 887 pvsTLIKKIDDLTAKLETasskcLHLGKKNQLLQQELLLMRTIQKKCGKLEKNKKQLEQEVVNLRSHMEKnmvehsqaQQ 966
Cdd:TIGR02169 762 ---ELEARIEELEEDLHK-----LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR--------LT 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 967 YAREVEERARQDLVEKLKQVNLFLQAQAASQESLEQLRENSNASVRsQMELRIKDLESQLYRMKAQEDFDKIELEKYKQL 1046
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE-ELEAALRDLESRLGDLKKERDELEAQLRELERK 904
|
730 740
....*....|....*....|....*....
gi 568941656 1047 YQEEFRARKSLSSKLNKTSEKLEEASSKL 1075
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
257-836 |
1.14e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 257 SETEEVKSRLEHEKV-GWEQELCRLRFALKQEEEKRRSADQLSEKTSEQLrrkgeqcqSEVEARQQleaslrtlemELKT 335
Cdd:PRK02224 194 AQIEEKEEKDLHERLnGLESELAELDEEIERYEEQREQARETRDEADEVL--------EEHEERRE----------ELET 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 336 VKSHLNQVLEERNETQRQlsREQNARmlqdgilashlckqkeiemtqkkmtsEVSVSHEKEKDLLHKNQRLQDEVAVLRL 415
Cdd:PRK02224 256 LEAEIEDLRETIAETERE--REELAE--------------------------EVRDLRERLEELEEERDDLLAEAGLDDA 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 416 EMDTIKSHNQEKEKRyledikiANEKNDNLQRmVKLNEETFTKTIFQYTGQLNSLKAENTMLSSKldnekqnKERLETDV 495
Cdd:PRK02224 308 DAEAVEARREELEDR-------DEELRDRLEE-CRVAAQAHNEEAESLREDADDLEERAEELREE-------AAELESEL 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 496 ESFRSRLASALHDHAEIQTAKRDLEIAFQRARDewfrvkdkmnfDMSNLRDNNEVLSQQLSKTERKLNSLEIEFHHTKDE 575
Cdd:PRK02224 373 EEAREAVEDRREEIEELEEEIEELRERFGDAPV-----------DLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 576 LREktlalkhAQRDLSQTQC-----QMKEVEHMFQDEQGKVskfmgKQESIEERLAQLQSENTLLRQQLDDA--ANKAES 648
Cdd:PRK02224 442 VEE-------AEALLEAGKCpecgqPVEGSPHVETIEEDRE-----RVEELEAELEDLEEEVEEVEERLERAedLVEAED 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 649 KDKTIVNIQDQFQDVLTRFQAESQRHSLRLE---DRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELAdTLKKQS 725
Cdd:PRK02224 510 RIERLEERREDLEELIAERRETIEEKRERAEelrERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA-ELKERI 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 726 MSEASLEVSSRYRSNLEEEARDLKKKLGQL-------RSQLQEARDQHREAvhHAEKMEDHLQKLELEKSKFEITIKKQS 798
Cdd:PRK02224 589 ESLERIRTLLAAIADAEDEIERLREKREALaelnderRERLAEKRERKREL--EAEFDEARIEEAREDKERAEEYLEQVE 666
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 568941656 799 EEIDQLQEN----LSRVNLSEEDKEKLQKLTELKESLECTVD 836
Cdd:PRK02224 667 EKLDELREErddlQAEIGAVENELEELEELRERREALENRVE 708
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
680-879 |
1.48e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 680 DRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQL 759
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 760 QEARDQHREAVHHAEKMEDHLQKLELEKSK-----------FEITIKKQSEEIDQLQENLsrvnlsEEDKEKLQKLTELK 828
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEdfldavrrlqyLKYLAPARREQAEELRADL------AELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568941656 829 ESLECTVDQEQKRSSALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKN 879
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
376-904 |
2.92e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 2.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 376 KEIEMTQKKMTSEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMDTIKSHNQEKEKrylediKIANEKNDNLQRMVKL-NEE 454
Cdd:TIGR04523 134 KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK------NIDKIKNKLLKLELLLsNLK 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 455 TFTKTIFQYTGQLNSLKAENTMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVK 534
Cdd:TIGR04523 208 KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 535 DKMNFDMSNLRDNNEVLSQ--------QLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQD 606
Cdd:TIGR04523 288 KQLNQLKSEISDLNNQKEQdwnkelksELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEE 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 607 EQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNIQDQFQdvltrfqaesqrhslRLEDRNQELV 686
Cdd:TIGR04523 368 KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE---------------LLEKEIERLK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 687 SECSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQH 766
Cdd:TIGR04523 433 ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 767 REAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLTELKEslecTVDQEQKRSSALE 846
Cdd:TIGR04523 513 KDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQ----TQKSLKKKQEEKQ 588
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 568941656 847 KELAEFKEVLKMTKKELNEYENRELNLRQDIKNNHLEMDiPVSTLIKKIDDLTAKLET 904
Cdd:TIGR04523 589 ELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENE-KLSSIIKNIKSKKNKLKQ 645
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
168-755 |
5.62e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 5.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 168 AAVDNLDDFTESSETASEDHELQGPDSESILCAIEHLRleckdtASLLKIRDAVYSYKRLIELKRSHCELLTGKLKRMEN 247
Cdd:COG1196 229 LLLLKLRELEAELEELEAELEELEAELEELEAELAELE------AELEELRLELEELELELEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 248 KYKGLQKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQLSEKTSEQLRRKGEQCQSEVEARQQLEASLR 327
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 328 TLEMELKTVKSHLNQVLEERNETQRQLSREQNARmlqdgilASHLCKQKEIEMTQKKMTSEVSVSHEKEKDLLHKNQRLQ 407
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERL-------ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 408 DEVAVLRLEMDTIKSHNQEKEKRYLEDIKIANEKN---DNLQRMVKLNEEtftktiFQYTGQLNSLKAENTMLSSKLDNE 484
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAarlLLLLEAEADYEG------FLEGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 485 KQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVKDKMNfdmSNLRDNNEVLSQQLSKTERKLNS 564
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR---ARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 565 LEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAAN 644
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 645 KAESKdktivniqdqfqdvltrfQAESQRHSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQ 724
Cdd:COG1196 687 RLAEE------------------ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580 590
....*....|....*....|....*....|.
gi 568941656 725 SMSEASLEVSSRYRSNLEEEARDLKKKLGQL 755
Cdd:COG1196 749 EEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
248-1081 |
9.51e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 9.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 248 KYKGLQKEMSETEEVKSRLehekvGWEQELCRLRFALKQEEEKRRSADQLSEKtsEQLRRKGEQCQSEVEARQQLEASLR 327
Cdd:pfam02463 171 KKEALKKLIEETENLAELI-----IDLEELKLQELKLKEQAKKALEYYQLKEK--LELEEEYLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 328 TLEMELKTVKSHLNQVLEERNETQRQLSREQNARMLQDGILASHLC-KQKEIEMTQKKMTSEVSVSHEKEKDLLHKNQRL 406
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKlLAKEEEELKSELLKLERRKVDDEEKLKESEKEK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 407 QDEVAVLRLEMDTIKSHNQEKEKRYLEDIKIANEKNDNLQRMVKL--NEETFTKTIFQYTGQLNSLKAENTMLSSKLDNE 484
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLeqLEEELLAKKKLESERLSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 485 KQNKERLetdvesfrSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVKDKMNFDMSNLRDNNEV-LSQQLSKTERKLN 563
Cdd:pfam02463 404 EKEAQLL--------LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLkDELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 564 SLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQD-EQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDA 642
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDgVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 643 ANKAESKDKTIVNIQDQFQDVLTRFQAESqRHSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLK 722
Cdd:pfam02463 556 TADEVEERQKLVRALTELPLGARKLRLLI-PKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTEL 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 723 KQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARdqhreavhHAEKMEDHLQKLELEKSKFEITIKKQSEEID 802
Cdd:pfam02463 635 TKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL--------LEIQELQEKAESELAKEEILRRQLEIKKKEQ 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 803 QLQENLSRVNLSEEDKEKLQKLTELKESLECTVDQEQKRSSALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKNNHL 882
Cdd:pfam02463 707 REKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKL 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 883 EMDIPVSTLIKKIDDLTAKLETASSKCLHLGKKNQLLQQELLLMRTIQKKCGKLEKNKKQLEQEVVNLRSHMEKNMVEhs 962
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEIT-- 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 963 QAQQYAREVEERARQDLVEKLKQVNLFLQAQAASQESLEQLRENSNASVRSQMELRIKDLESQLYRMKAQEDFDKIELEK 1042
Cdd:pfam02463 865 KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEE 944
|
810 820 830
....*....|....*....|....*....|....*....
gi 568941656 1043 YKQLYQEEFRARKSLSSKLNKTSEKLEEASSKLLLEEQQ 1081
Cdd:pfam02463 945 ADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEF 983
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
652-873 |
1.31e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 652 TIVNIQDQFQDvLTRFQ-----AESQRHSLR-LEDRNQELVsecsHLRERLCQYENEKAEREVVVRQLQQELADtlKKQS 725
Cdd:COG4913 226 AADALVEHFDD-LERAHealedAREQIELLEpIRELAERYA----AARERLAELEYLRAALRLWFAQRRLELLE--AELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 726 MSEASLEvssryrsNLEEEARDLKKKLGQLRSQLQEARDQHREAVHhaekmeDHLQKLELEKSKFEITIKKQSEEIDQLQ 805
Cdd:COG4913 299 ELRAELA-------RLEAELERLEARLDALREELDELEAQIRGNGG------DRLEQLEREIERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568941656 806 ENLSRVNLSEED-----KEKLQKLTELKESLECTVDQEQKRSSALEKELAEFKEVLKMTKKELNEYENRELNL 873
Cdd:COG4913 366 ALLAALGLPLPAsaeefAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNI 438
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
273-1081 |
1.55e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 273 WEQELCRLRFALKQEEEKRRSADQLSEKTSEQLRRKGEQCQSEVEARQQLEASLRTLEMELKTVKSHLNQVLEERNETQR 352
Cdd:TIGR00606 243 YENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELV 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 353 QLSREQNaRMLQDGILASHLCKQKEIEMTQKKMTSEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMDT---IKSHNQEKEK 429
Cdd:TIGR00606 323 DCQRELE-KLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSerqIKNFHTLVIE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 430 RYLEDIKIANEKNDNLQRMVKLNEETFTKTIFQYTGQLNSLKAENTMLSSKLDN-----------EKQNKERLETDVESF 498
Cdd:TIGR00606 402 RQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEElkfvikelqqlEGSSDRILELDQELR 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 499 RSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVKDKMNFDMSNLRDNNEVLSQQLSKTERK----------------- 561
Cdd:TIGR00606 482 KAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKmdkdeqirkiksrhsde 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 562 LNSLEIEFHHTK---DELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQ------LQSEN 632
Cdd:TIGR00606 562 LTSLLGYFPNKKqleDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDvcgsqdEESDL 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 633 TLLRQQLDDAAnKAESKDKTIVNIQDQFQDVLTRFQAESQRHSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQ 712
Cdd:TIGR00606 642 ERLKEEIEKSS-KQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKK 720
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 713 LQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHL------QKLELE 786
Cdd:TIGR00606 721 KEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLtdvtimERFQME 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 787 KSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLTELKESLEctvdqeqkrssALEKELAEFKEVLKMTKKELNEY 866
Cdd:TIGR00606 801 LKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIE-----------LNRKLIQDQQEQIQHLKSKTNEL 869
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 867 ENRELNLRQDIKNNHlEMDIPVSTLIKKIDDLTAKLETASSKCLHLgkKNQLLQQELLLMRTIQKKcgklEKNKKQLEQE 946
Cdd:TIGR00606 870 KSEKLQIGTNLQRRQ-QFEEQLVELSTEVQSLIREIKDAKEQDSPL--ETFLEKDQQEKEELISSK----ETSNKKAQDK 942
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 947 VVNLRSHMEKNMVEHSQAQQYAREVEERARQDLVEKLKQVNLFLQAQAASQESLEQLRENSNASVRSQmELRIKDLESQL 1026
Cdd:TIGR00606 943 VNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQ-KIQERWLQDNL 1021
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 568941656 1027 YRMKAQEDFDKIELEK---YKQLYQEEFRARKSLSSKLNKTSEKLEEASSKLLLEEQQ 1081
Cdd:TIGR00606 1022 TLRKRENELKEVEEELkqhLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKG 1079
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
486-873 |
1.69e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 486 QNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVkDKMNFDMSNLRDNNEVLSQQLSKTERKLNSL 565
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL-EELKEEIEELEKELESLEGSKRKLEEKIREL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 566 EIEFHHTKDELREktlaLKHAQRDLSQtqcqMKEVEHMFQDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAank 645
Cdd:PRK03918 265 EERIEELKKEIEE----LEEKVKELKE----LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL--- 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 646 aESKDKTIVNIQDQFQDVLTRFQAESQRHslRLEDRNQELVSECSHLRERLCQYENEKAEREVvvrqlqqELADTLKKQS 725
Cdd:PRK03918 334 -EEKEERLEELKKKLKELEKRLEELEERH--ELYEEAKAKKEELERLKKRLTGLTPEKLEKEL-------EELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 726 MSEASlEVSSRyRSNLEEEARDLKKKLGQLRSQL-------QEARDQHRE---AVHHAE---------KMEDHLQKLELE 786
Cdd:PRK03918 404 EEEIS-KITAR-IGELKKEIKELKKAIEELKKAKgkcpvcgRELTEEHRKellEEYTAElkriekelkEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 787 KSKFEITIKKQS---------EEIDQLQENLSRVNLS--EEDKEKLQKLTELKESLEC---TVDQEQKRSSALEKELAEF 852
Cdd:PRK03918 482 LRELEKVLKKESeliklkelaEQLKELEEKLKKYNLEelEKKAEEYEKLKEKLIKLKGeikSLKKELEKLEELKKKLAEL 561
|
410 420
....*....|....*....|.
gi 568941656 853 KEVLKMTKKELNEYENRELNL 873
Cdd:PRK03918 562 EKKLDELEEELAELLKELEEL 582
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
284-1070 |
2.87e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 284 LKQEEEKRRSADQLSEKTSEQLRRKGEQCQSEVEARQQLEASLRtlemelKTVKSHLNQvLEERNETQRQLSREQNARML 363
Cdd:TIGR00606 194 VRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSR------EIVKSYENE-LDPLKNRLKEIEHNLSKIMK 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 364 QDGILASHLCKQKEIEMTQK----KMTSEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMD-TIKSHNQEKEKRYLEDIKIA 438
Cdd:TIGR00606 267 LDNEIKALKSRKKQMEKDNSelelKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQrELEKLNKERRLLNQEKTELL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 439 NEKNDNLQRMVKLNEETFTKTIFQytgQLNSLKAENTMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRd 518
Cdd:TIGR00606 347 VEQGRLQLQADRHQEHIRARDSLI---QSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKER- 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 519 leiAFQRARDEwfrVKDKMNFDMSNLRDNNEVLSQQLSKTERKLNSLEiEFHHTKDELREKTLALKHAQRDLSQ------ 592
Cdd:TIGR00606 423 ---LKQEQADE---IRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ-QLEGSSDRILELDQELRKAERELSKaeknsl 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 593 TQCQMKEVEHMfQDEQGKVSKfmgKQESIEERLAQLQSENTLLRQQLDDAANKAEsKDKTIVNIQDQFQDVLTRF----- 667
Cdd:TIGR00606 496 TETLKKEVKSL-QNEKADLDR---KLRKLDQEMEQLNHHTTTRTQMEMLTKDKMD-KDEQIRKIKSRHSDELTSLlgyfp 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 668 ---QAESQRHSLR-----LEDRNQELVSECSHLRERLCQYENEKAER--------------------EVVVRQLQQELAD 719
Cdd:TIGR00606 571 nkkQLEDWLHSKSkeinqTRDRLAKLNKELASLEQNKNHINNELESKeeqlssyedklfdvcgsqdeESDLERLKEEIEK 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 720 TLKKQSMSEASLEVSSRYRSNLEEEARD---LKKKLGQLRSQLQEA----RDQHREAVHHAEKMEDHLQKLELEKSKFEI 792
Cdd:TIGR00606 651 SSKQRAMLAGATAVYSQFITQLTDENQSccpVCQRVFQTEAELQEFisdlQSKLRLAPDKLKSTESELKKKEKRRDEMLG 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 793 TIKKQSEEIDQLQENLSRVnlseedKEKLQKLTELKESLECTVDQEQKRSSALEKELAEFKEVLK----MTKKELNEYEN 868
Cdd:TIGR00606 731 LAPGRQSIIDLKEKEIPEL------RNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtiMERFQMELKDV 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 869 RELNLRQDIKNNHLEMDIPVSTLIKKIDDLTAKLETASSKCLHLGKknqLLQQELLLMRTIQKKCGKLEKNKKQLEQEVV 948
Cdd:TIGR00606 805 ERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRK---LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 949 NLRSHMEKNMVEHSQAQQYAREVEERARQDLVEKLkqvnlFLQAQAASQESLEQLRENSNASVRSQMELRIKDLESQLYR 1028
Cdd:TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLET-----FLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGY 956
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 568941656 1029 MKAQEDFDKIELEKYKQLYQEEFRARKSLSSKLNKTSEKLEE 1070
Cdd:TIGR00606 957 MKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINE 998
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
241-1053 |
3.22e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 3.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 241 KLKRMENKYKGLQKEMSETEEVKSRL--EHEKVGWEQELCRLRFALKQEEEKRRSADQLSEKTSEQLRRKGEQCQSEVEA 318
Cdd:pfam02463 201 KLKEQAKKALEYYQLKEKLELEEEYLlyLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 319 RQQLEASLRTLEMELKTVKSHLNQVLEERNETQRQLSREQNarmlQDGILASHLCKQKEIEMTQKKMTSEVSVSHEKEKD 398
Cdd:pfam02463 281 KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK----EKKKAEKELKKEKEEIEELEKELKELEIKREAEEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 399 LLHKNQRLQDEVAVLRLEMDTIKSHNQEKEKRYLEDIKIANEKNDNLQRMVKLNEETFTKTIFQYTGQLNSLKAENTMLS 478
Cdd:pfam02463 357 EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 479 SKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVKDKMNFDMSNLRDNNEVLSQQLSKT 558
Cdd:pfam02463 437 ESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALI 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 559 ERKLNSLEIEFHHTKDELREKTLALKHA-----QRDLSQTQCQMKEVEHMFQ------DEQGKVSKFMGKQESIEERLAQ 627
Cdd:pfam02463 517 KDGVGGRIISAHGRLGDLGVAVENYKVAistavIVEVSATADEVEERQKLVRaltelpLGARKLRLLIPKLKLPLKSIAV 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 628 LQSENTLLRQQLDDAANKAESKDKTIVNIQDQFQDVLtrfQAESQRHSLRLEDRNQELVSecshlrerLCQYENEKAERE 707
Cdd:pfam02463 597 LEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTE---LTKLKESAKAKESGLRKGVS--------LEEGLAEKSEVK 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 708 VVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLELEK 787
Cdd:pfam02463 666 ASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKI 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 788 SKFEITIKKQSEEIDQLQENLSRVnLSEEDKEKLQKLTELKESLEctvDQEQKRSSALEKELAEFKEVLKMTKKELNEYE 867
Cdd:pfam02463 746 DEEEEEEEKSRLKKEEKEEEKSEL-SLKEKELAEEREKTEKLKVE---EEKEEKLKAQEEELRALEEELKEEAELLEEEQ 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 868 NRELNL--RQDIKNNHLEMDIPVSTLIKKIDDLTAKLETASSKCLHLGKKNQLLQQELLLMRTIQKKCGKLEKNKKQLEQ 945
Cdd:pfam02463 822 LLIEQEekIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKE 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 946 EVVNLRSHMEKNMVEHSQAQQYAREVEERaRQDLVEKLKQVNLFLQAQAASQESLEQLRENSNASVRSQMELRIKDLES- 1024
Cdd:pfam02463 902 LEEESQKLNLLEEKENEIEERIKEEAEIL-LKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAi 980
|
810 820 830
....*....|....*....|....*....|
gi 568941656 1025 -QLYRMKAQEDFDKIELEKYKQLYQEEFRA 1053
Cdd:pfam02463 981 eEFEEKEERYNKDELEKERLEEEKKKLIRA 1010
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
288-805 |
3.44e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 288 EEKRRSADQLSEKTSEQLRRKGEQCQSEV-EARQQLEASLRTLEMELKTVKSHLNQVLEERNetqrQLSREQ-NARMLQD 365
Cdd:pfam15921 305 QEQARNQNSMYMRQLSDLESTVSQLRSELrEAKRMYEDKIEELEKQLVLANSELTEARTERD----QFSQESgNLDDQLQ 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 366 GILASHLCKQKEIEMTQKK--------MTSEVSVSHEKeKDLLHKNQRLQDEVAVLRlemdTIKSHNQEKEKRYLEDIKI 437
Cdd:pfam15921 381 KLLADLHKREKELSLEKEQnkrlwdrdTGNSITIDHLR-RELDDRNMEVQRLEALLK----AMKSECQGQMERQMAAIQG 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 438 ANE---KNDNLQRMVKLNEETFTKTIFQYTGQLNSLK-AENTM--LSSKLDNEKQNKERLETDVESFRSRLASALHDHAE 511
Cdd:pfam15921 456 KNEsleKVSSLTAQLESTKEMLRKVVEELTAKKMTLEsSERTVsdLTASLQEKERAIEATNAEITKLRSRVDLKLQELQH 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 512 IQTAKRDLEIAfqRARDEWFRV----KDKMnfdMSNLRDNNEVLSQQLSKTERKLNSLEIEFHHTKDELREKTLALKHAQ 587
Cdd:pfam15921 536 LKNEGDHLRNV--QTECEALKLqmaeKDKV---IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFK 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 588 RDLSQTQCQMKEVEHMFQDEQGKVSKFMgkqESIEERLAQLQSentlLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRF 667
Cdd:pfam15921 611 ILKDKKDAKIRELEARVSDLELEKVKLV---NAGSERLRAVKD----IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 668 QAESQRHSLRLEDRNQELVSECSHL---RERLCQYENEKAEREVVVRQLQQELA------DTLK-KQSMSEASLEVSSRY 737
Cdd:pfam15921 684 RNKSEEMETTTNKLKMQLKSAQSELeqtRNTLKSMEGSDGHAMKVAMGMQKQITakrgqiDALQsKIQFLEEAMTNANKE 763
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568941656 738 RSNLEEEARDLKKKLG-------QLRSQLQEARDQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQ 805
Cdd:pfam15921 764 KHFLKEEKNKLSQELStvateknKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLK 838
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
225-829 |
3.86e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 3.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 225 KRLIELKRSHCELLTGKLKRMENKYKGLQKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQLSEKTSEQ 304
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 305 LRRKGEqcqsevearqqLEASLRTLEMELKTVKSHLnQVLEERNETQRQLSREQNARMLQDGILASHLCKQKEIEMTQKK 384
Cdd:PRK03918 251 EGSKRK-----------LEEKIRELEERIEELKKEI-EELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 385 MTSEVSVSHEKEKDLLHKNQRLQdevavlrlEMDTIKSHNQEKEKRYLEDIKIANEKNDNLQRMVKLNEETFTKTIFQYT 464
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLE--------ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 465 GQLNSLKAENTMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEiafqraRDEWFRVKDKMNFDMSNL 544
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT------EEHRKELLEEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 545 RDNNEVLSQQLSKTERKLNSLEIEFHHTKDELREKTLA--LKHAQRDLSQTQCQ-MKEVEHMFQDEQGKVSKFMGKQESI 621
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAeqLKELEEKLKKYNLEeLEKKAEEYEKLKEKLIKLKGEIKSL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 622 EERLAQLQsentLLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQAESQRHSLRLE---DRNQELVSECSHLRERLCQ 698
Cdd:PRK03918 545 KKELEKLE----ELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpfyNEYLELKDAEKELEREEKE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 699 YENEKAErevvVRQLQQELADTLKKQSMSEASLEVSSRYRSnlEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMED 778
Cdd:PRK03918 621 LKKLEEE----LDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRREEIKK 694
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 568941656 779 HLQKLELEKSKfeitIKKQSEEIDQLQENLSRVnlsEEDKEKLQKL-TELKE 829
Cdd:PRK03918 695 TLEKLKEELEE----REKAKKELEKLEKALERV---EELREKVKKYkALLKE 739
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
551-769 |
7.21e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 7.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 551 LSQQLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEhmfqdeqGKVSKFMGKQESIEERLAQLQS 630
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE-------AELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 631 EntlLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQAeSQRHSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVV 710
Cdd:COG4942 105 E---LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568941656 711 RQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREA 769
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
519-905 |
7.79e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 7.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 519 LEIAFQRARDEWFRVKDKmnfdmsnlrdNNEVLSQQLSKTERKLNSLEIEfhhtKDELREKTLALKHAQRDLSQTQCQMK 598
Cdd:COG4717 47 LLERLEKEADELFKPQGR----------KPELNLKELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 599 EVEHMFQ--DEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLD---DAANKAESKDKTIVNIQDQFQDVLTRFQAESQR 673
Cdd:COG4717 113 ELREELEklEKLLQLLPLYQELEALEAELAELPERLEELEERLEelrELEEELEELEAELAELQEELEELLEQLSLATEE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 674 HSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEA------------------------ 729
Cdd:COG4717 193 ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlllliaaallallglggsllsli 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 730 --------------SLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEAR--------------------------DQHREA 769
Cdd:COG4717 273 ltiagvlflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEEleellaalglppdlspeellelldriEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 770 VHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLTELKESLECTVDQEQKRSS--ALEK 847
Cdd:COG4717 353 LREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeELEE 432
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 568941656 848 ELAEFKEVLKMTKKELNEYENRELNLRQDIKnnHLEMDIPVSTLIKKIDDLTAKLETA 905
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELE--QLEEDGELAELLQELEELKAELREL 488
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
618-875 |
1.23e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.44 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 618 QESIEERLAQL------QSENTLLRQQLDDAANKAESKDKTIVNIQDQFQDVL-TRFQAESQRhslRLEDRNQELVSECS 690
Cdd:PRK11281 62 QQDLEQTLALLdkidrqKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETrETLSTLSLR---QLESRLAQTLDQLQ 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 691 HLRERLCQYEN---------EKAEREVVVRQLQ-QELADTLKKQSMSEASLEVSSRYRSNLEEEARDLK----KKLGQLR 756
Cdd:PRK11281 139 NAQNDLAEYNSqlvslqtqpERAQAALYANSQRlQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQndlqRKSLEGN 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 757 SQLQEARDQHREavhhaEKMEdHLQKLElekskfeitikkqsEEIDQLQENLSRVNLsEEDKEKLQKLTELKESLECTVD 836
Cdd:PRK11281 219 TQLQDLLQKQRD-----YLTA-RIQRLE--------------HQLQLLQEAINSKRL-TLSEKTVQEAQSQDEAARIQAN 277
|
250 260 270
....*....|....*....|....*....|....*....
gi 568941656 837 QEQKRSSALEKELAEFkeVLKMTKKeLNEYENRELNLRQ 875
Cdd:PRK11281 278 PLVAQELEINLQLSQR--LLKATEK-LNTLTQQNLRVKN 313
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
240-972 |
1.34e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 240 GKLKRMENKYKGLQKEMSETEEVKSRLEH----EKVGWEQELCRLRFALKQEEEKRRSADQLSEKTSE-QLRRKGEQCQS 314
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARKAEEAKKKAEDarkaEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKaEEARKAEDAKK 1177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 315 EVEARQQLEasLRTLEmELKTVKSHLNQVLEERNETQRqlsREQNARMLQDGILASHLCKQKEIemtqkKMTSEVSVSHE 394
Cdd:PTZ00121 1178 AEAARKAEE--VRKAE-ELRKAEDARKAEAARKAEEER---KAEEARKAEDAKKAEAVKKAEEA-----KKDAEEAKKAE 1246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 395 KEKDLLHKNQRLQDEVAVLRLEMDTIKShnqeKEKRYLEDIKIANE--KNDNLQRMVKLNEETFTKTIFQYTGQLNSLKA 472
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKA----EEARKADELKKAEEkkKADEAKKAEEKKKADEAKKKAEEAKKADEAKK 1322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 473 ENTMLSSKLDNEKQNKERLETDVESFRsrlasalhdhAEIQTAKRDLEIAFQRAR-DEWFRVKDKMNFDMSNLRDNNEVL 551
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAK----------AEAEAAADEAEAAEEKAEaAEKKKEEAKKKADAAKKKAEEKKK 1392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 552 SQQLSKTERklnsleiEFHHTKDELREKTLALKHAQrDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQLQSE 631
Cdd:PTZ00121 1393 ADEAKKKAE-------EDKKKADELKKAAAAKKKAD-EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 632 NTLLRQQLDDAANKAESKDKTivniqdqfqDVLTRFQAESQRHS--LRLEDRNQELVSECSHLRERLCQYENEKAEREVV 709
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKA---------DEAKKKAEEAKKKAdeAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 710 VRQLQQ----ELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLEL 785
Cdd:PTZ00121 1536 ADEAKKaeekKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 786 EKSKFEITIKKQSEEIDQLQENLSRVnlSEEDKEKLQKLTELKESLECTVDQEQKRSSALEKELAEFK--EVLKMTKKEL 863
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKK--EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKkaEEDEKKAAEA 1693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 864 NEYENRELNLRQDIKNNHLEMdipvstlIKKIDDLTAKLETASSKCLHLGKKNQLLQQELLLMRTIQKKCGKLEKNKKQL 943
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEE-------KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766
|
730 740
....*....|....*....|....*....
gi 568941656 944 EQEVVNLRSHMEKNMVEHSQAQQYAREVE 972
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
249-882 |
1.46e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 249 YKGLQKEMSETEEVKSRLEhekvgweqELCRLRFALKQEEEKRRSADQLSEK-TSEQLRRKGEQCQSEVEarqQLEASLR 327
Cdd:COG4913 237 LERAHEALEDAREQIELLE--------PIRELAERYAAARERLAELEYLRAAlRLWFAQRRLELLEAELE---ELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 328 TLEMELKTVKSHLNQVLEERNETQRQLSReqnarmlQDGILASHLckQKEIEMTQkkmtsevsvshEKEKDLLHKNQRLQ 407
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRG-------NGGDRLEQL--EREIERLE-----------RELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 408 DEVAVLRLEMDTIkshnqekEKRYLEDIKIANEKNDNLQRMVKLNEETFTKTIfqytGQLNSLKAENTMLSSKLDNEKQN 487
Cdd:COG4913 366 ALLAALGLPLPAS-------AEEFAALRAEAAALLEALEEELEALEEALAEAE----AALRDLRRELRELEAEIASLERR 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 488 KERLETDVESFRSRLASAL-----------------HDHAEIQTA--------KRDL---EIAFQRARdEWF-RVKDKMN 538
Cdd:COG4913 435 KSNIPARLLALRDALAEALgldeaelpfvgelievrPEEERWRGAiervlggfALTLlvpPEHYAAAL-RWVnRLHLRGR 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 539 FDMSNLRDNNEvlSQQLSKTE-----RKLNSLEIEFHHT-KDELREKTL--------ALKHAQRDLSQTqCQMKEVEHMF 604
Cdd:COG4913 514 LVYERVRTGLP--DPERPRLDpdslaGKLDFKPHPFRAWlEAELGRRFDyvcvdspeELRRHPRAITRA-GQVKGNGTRH 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 605 Q-DEQGKVSK--FMGkqESIEERLAQLQSENTLLRQQLDDAANKAESkdktivnIQDQFQDVLTRFQAESQRHSLRLEDR 681
Cdd:COG4913 591 EkDDRRRIRSryVLG--FDNRAKLAALEAELAELEEELAEAEERLEA-------LEAELDALQERREALQRLAEYSWDEI 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 682 N-QELVSECSHLRERLCQYENEKAErevvVRQLQQELaDTLKKQsmseaslevssryRSNLEEEARDLKKKLGQLRSQLQ 760
Cdd:COG4913 662 DvASAEREIAELEAELERLDASSDD----LAALEEQL-EELEAE-------------LEELEEELDELKGEIGRLEKELE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 761 EARDQHREA---VHHAEKMEDHLQKLELEKsKFEITIKKQSEeiDQLQENLSrvnlseedkEKLQKLTELKESLEctvdq 837
Cdd:COG4913 724 QAEEELDELqdrLEAAEDLARLELRALLEE-RFAAALGDAVE--RELRENLE---------ERIDALRARLNRAE----- 786
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 568941656 838 eqkrsSALEKELAEFKEVLKMTKKELN---EYENRELNLRQDIKNNHL 882
Cdd:COG4913 787 -----EELERAMRAFNREWPAETADLDadlESLPEYLALLDRLEEDGL 829
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
839-1092 |
1.70e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 839 QKRSSALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKNnhlemdipvstLIKKIDDLTAKLETASSKclhlgkknql 918
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-----------LERRIAALARRIRALEQE---------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 919 lqqelllMRTIQKKCGKLEKNKKQLEQEVVNLRSHMEKNMVEHSQAQQYAREVEERARQDLVEKLKQVNLFLQAQAASQE 998
Cdd:COG4942 78 -------LAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 999 SLEQLRENSNasvrsqmelRIKDLESQLYRMKAQEDFDKIELEKYKQLYQEEFRARKSLSSKLNKTSEKLEEASSKLLLE 1078
Cdd:COG4942 151 QAEELRADLA---------ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
250
....*....|....
gi 568941656 1079 EQQNRSLLSTLSTR 1092
Cdd:COG4942 222 AEELEALIARLEAE 235
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
466-783 |
1.72e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 466 QLNSLKAENTMLSSKLDNEKQNKERLETDVESFRSRLaSALHDHAEIQTAKRDLEIAfQRARDEWFRVKDKMNFDMSNLR 545
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERR-EALQRLAEYSWDEIDVASA-EREIAELEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 546 dnneVLSQQLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQgkvskfmgkQESIEERL 625
Cdd:COG4913 689 ----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL---------RALLEERF 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 626 AQLQSENTL------LRQQLDDAANKAESKDKTIVNIQDQFQDvltRFQAESQRHSLRLEDrNQELVSECSHL------- 692
Cdd:COG4913 756 AAALGDAVErelrenLEERIDALRARLNRAEEELERAMRAFNR---EWPAETADLDADLES-LPEYLALLDRLeedglpe 831
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 693 -RERLCQYENEKAEREVVvrQLQQELADTLK--KQSMSE--ASLEVSS---------RYRSNLEEEARDLKKKLGQLRSQ 758
Cdd:COG4913 832 yEERFKELLNENSIEFVA--DLLSKLRRAIReiKERIDPlnDSLKRIPfgpgrylrlEARPRPDPEVREFRQELRAVTSG 909
|
330 340
....*....|....*....|....*
gi 568941656 759 LQEARDQHREavHHAEKMEDHLQKL 783
Cdd:COG4913 910 ASLFDEELSE--ARFAALKRLIERL 932
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
225-454 |
1.75e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 225 KRLIELKRSHCELLTGKLK--RMENKYKGLQKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQLSEKTS 302
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEeaKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 303 EQlRRKGEQCQSEVEARQQLEASLRTLEMELKTVKsHLNQVLEERNETQRQLSREQNARMLQdgilASHLCKQKEIEmtq 382
Cdd:PTZ00121 1672 ED-KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKKAEEENKIK----AEEAKKEAEED--- 1742
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568941656 383 KKMTSEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMDTI--KSHNQEKEKRYLEDIKIANEKNDNLQRMVKLNEE 454
Cdd:PTZ00121 1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVieEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKE 1816
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
420-1070 |
2.61e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 420 IKSHNQEKEKRYLEDIKIANEKNDNLQRMVKLNEETFTK---TIFQYTGQLNSLKAENTMLSSKLDNEKQNKERLETDVe 496
Cdd:TIGR04523 27 IANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKdeeKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDL- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 497 sfrSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVKDKMNFDMSNLRDNNEVLSQQLSKTERKLNSLEIEFHHTKDEL 576
Cdd:TIGR04523 106 ---SKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 577 REKtlalkhaQRDLSQTQCQMKEVEHMFQDEQGKVSKfmgkQESIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNI 656
Cdd:TIGR04523 183 LNI-------QKNIDKIKNKLLKLELLLSNLKKKIQK----NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNT 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 657 QDQFQDVLTrfqaESQRHSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLKkqsmseaslevssr 736
Cdd:TIGR04523 252 QTQLNQLKD----EQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELK-------------- 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 737 yrsnleEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENlsrvnlSEE 816
Cdd:TIGR04523 314 ------SELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE------NQS 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 817 DKEKLQKLTELKESLECTVDQEQKRSSALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKNnhLEMDIPV-STLIKKI 895
Cdd:TIGR04523 382 YKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD--LTNQDSVkELIIKNL 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 896 DDLTAKLETASSKCLHLGKKNQLlqqelllmrtiqkkcgKLEKNKKQLEQEVVNLRSHMEKNmvehsqaqqyareveera 975
Cdd:TIGR04523 460 DNTRESLETQLKVLSRSINKIKQ----------------NLEQKQKELKSKEKELKKLNEEK------------------ 505
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 976 rQDLVEKLKQVNlflQAQAASQESLEQLRensnaSVRSQMELRIKDLESQLYRMKaqEDFDKIELEKYKQLYQEEFRARK 1055
Cdd:TIGR04523 506 -KELEEKVKDLT---KKISSLKEKIEKLE-----SEKKEKESKISDLEDELNKDD--FELKKENLEKEIDEKNKEIEELK 574
|
650
....*....|....*
gi 568941656 1056 SLSSKLNKTSEKLEE 1070
Cdd:TIGR04523 575 QTQKSLKKKQEEKQE 589
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
611-875 |
3.60e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 611 VSKFMGKQESIEERLAQLQSENTLlrQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQAESQRHS----LRLEDRNQEL- 685
Cdd:COG3206 73 LSSLSASDSPLETQIEILKSRPVL--ERVVDKLNLDEDPLGEEASREAAIERLRKNLTVEPVKGSnvieISYTSPDPELa 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 686 ------VSEcSHLRERLcqyENEKAEREVVVRQLQQELADTLKKQSMSEASLEvssRYRS-----NLEEEARDLKKKLGQ 754
Cdd:COG3206 151 aavanaLAE-AYLEQNL---ELRREEARKALEFLEEQLPELRKELEEAEAALE---EFRQknglvDLSEEAKLLLQQLSE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 755 LRSQLQEARDQHREAVHHAEKMEDhlqklELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKE--------KLQKLTE 826
Cdd:COG3206 224 LESQLAEARAELAEAEARLAALRA-----QLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSarytpnhpDVIALRA 298
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 568941656 827 LKESLECTVDQEQKRS-SALEKELAEFKEVLKMTKKELNEYENRELNLRQ 875
Cdd:COG3206 299 QIAALRAQLQQEAQRIlASLEAELEALQAREASLQAQLAQLEARLAELPE 348
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
419-1085 |
3.74e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 419 TIKSHNQEKEKRYLEDIKIANEKNDNLQRMVKLNEETFTKTIFQYTGQLNSLKAENT------MLSSKLDNEKQNKERLE 492
Cdd:pfam05483 96 SIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNAtrhlcnLLKETCARSAEKTKKYE 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 493 TDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEwfrVKDKMNFDMSNLRDNNEVLSQQLSKTERKLNSLEIEFHHT 572
Cdd:pfam05483 176 YEREETRQVYMDLNNNIEKMILAFEELRVQAENARLE---MHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEK 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 573 KDELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAAnkaeskdKT 652
Cdd:pfam05483 253 ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIAT-------KT 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 653 IVNIQDQFQDVLTRFQAESQRHSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQEladtlkkqsmsEASLE 732
Cdd:pfam05483 326 ICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKK-----------SSELE 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 733 VSSRYRSNLEEEARDLKKKLGQLRSQL----------QEARDQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEID 802
Cdd:pfam05483 395 EMTKFKNNKEVELEELKKILAEDEKLLdekkqfekiaEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVE 474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 803 QLQENLsrvnlsEEDKEKLQKLTELKESLECTVDQEQKRSSALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKNNHL 882
Cdd:pfam05483 475 DLKTEL------EKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRD 548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 883 EMDIPVSTLIKKIDDLTAKL----ETASSKCLHLGKKNQLLQQELLLMRTIQKKCGKLEKNKKQLEQEVVNLRshmEKNM 958
Cdd:pfam05483 549 ELESVREEFIQKGDEVKCKLdkseENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALK---KKGS 625
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 959 VEHSQAQQYAREVE------ERARQDLVEKLKQVNLFLQAQAASQESL----EQLRENSNASVRSQMELRI----KDLES 1024
Cdd:pfam05483 626 AENKQLNAYEIKVNklelelASAKQKFEEIIDNYQKEIEDKKISEEKLleevEKAKAIADEAVKLQKEIDKrcqhKIAEM 705
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568941656 1025 QLYRMKAQEDFDKI------ELEKYKQLYQEEFRARKSLSSKLNKTSEKLEEASSKLLLEEQQNRSL 1085
Cdd:pfam05483 706 VALMEKHKHQYDKIieerdsELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKL 772
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
246-885 |
4.59e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 246 ENKYKGLQKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQLSEKTSEQLRRKG--EQCQSEVEARQQLE 323
Cdd:TIGR00606 318 ERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGfeRGPFSERQIKNFHT 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 324 ASLRTLEMELKTVKSHLNQVLEERNETQRQLSREQNARMLQDGILASHLCKQKEIEMTQKKMTSEVSVSHEKEKDLLHKN 403
Cdd:TIGR00606 398 LVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELD 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 404 QRLQDEVAVLRLEMDTIKSHNQEKEKRYLEDIK--IANEKNDNLQRMVKLNEETFTKTI-------------------FQ 462
Cdd:TIGR00606 478 QELRKAERELSKAEKNSLTETLKKEVKSLQNEKadLDRKLRKLDQEMEQLNHHTTTRTQmemltkdkmdkdeqirkikSR 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 463 YTGQLNSLKAE---NTMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVKDKMNF 539
Cdd:TIGR00606 558 HSDELTSLLGYfpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDE 637
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 540 --DMSNLRDNNEVLSQQLSKTERKLNSLEIEFHHTKDelrEKTLALKHAQRDLsQTQcqmKEVEHMFQDEQGKVSKFMGK 617
Cdd:TIGR00606 638 esDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTD---ENQSCCPVCQRVF-QTE---AELQEFISDLQSKLRLAPDK 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 618 QESIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQ--------AESQRHSLRLEDRNQELVSEC 689
Cdd:TIGR00606 711 LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQrlkndieeQETLLGTIMPEEESAKVCLTD 790
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 690 SHLRERLcQYENEKAEREV--------------VVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQL 755
Cdd:TIGR00606 791 VTIMERF-QMELKDVERKIaqqaaklqgsdldrTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL 869
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 756 RSQlqeaRDQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEI--------DQLQENLSRVNLSEEDKEKLQ-KLTE 826
Cdd:TIGR00606 870 KSE----KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDspletfleKDQQEKEELISSKETSNKKAQdKVND 945
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568941656 827 LKESlectVDQEQKRSSALEKELAEFKEVLKMTKK--------ELNEYENRELNLRQDIKNNHLEMD 885
Cdd:TIGR00606 946 IKEK----VKNIHGYMKDIENKIQDGKDDYLKQKEtelntvnaQLEECEKHQEKINEDMRLMRQDID 1008
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
743-865 |
5.91e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.30 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 743 EEARDLKKKLGQLRSQLQEA-RDQHREAVHHAEKMEDHLQKLElekskfeitikkqsEEIDQLQENLsrvnlsEEDKEKL 821
Cdd:COG0542 411 EELDELERRLEQLEIEKEALkKEQDEASFERLAELRDELAELE--------------EELEALKARW------EAEKELI 470
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 568941656 822 QKLTELKESLEctvdQEQKRSSALEKELAEFKEVLKMTKKELNE 865
Cdd:COG0542 471 EEIQELKEELE----QRYGKIPELEKELAELEEELAELAPLLRE 510
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
672-1069 |
6.77e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 6.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 672 QRHSLRLEDRNQELVSECSHLRERLC----QYENEKAEREVVVRQLQQELADTLKKQSMSEASLevsSRYRSNLEEEAR- 746
Cdd:pfam15921 263 QQHQDRIEQLISEHEVEITGLTEKASsarsQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTV---SQLRSELREAKRm 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 747 ------DLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKL--ELEKSKFEITIKKQSEE------------IDQLQE 806
Cdd:pfam15921 340 yedkieELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLlaDLHKREKELSLEKEQNKrlwdrdtgnsitIDHLRR 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 807 NLSRVNLSEEDKEKLQKL--TELKESLECTVDQEQKRSSALEK------ELAEFKEVLKMTKKELN----EYENRELNLr 874
Cdd:pfam15921 420 ELDDRNMEVQRLEALLKAmkSECQGQMERQMAAIQGKNESLEKvssltaQLESTKEMLRKVVEELTakkmTLESSERTV- 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 875 QDIKNNHLEMDIPVSTLIKKIDDLTAKLETASSKCLHLgkknqllQQELLLMRTIQKKCGKLEKNKKQLEQEVVNLRSHM 954
Cdd:pfam15921 499 SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL-------KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQI 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 955 EkNMVEhsQAQQYAREveerARQDLVEKlKQVNLFLQAQAASQESLEQLRENSNASVRsQMELRIKDLESQLYRMKAQED 1034
Cdd:pfam15921 572 E-NMTQ--LVGQHGRT----AGAMQVEK-AQLEKEINDRRLELQEFKILKDKKDAKIR-ELEARVSDLELEKVKLVNAGS 642
|
410 420 430
....*....|....*....|....*....|....*
gi 568941656 1035 FDKIELEKYKQLYQEEFRARKSLSSKLNKTSEKLE 1069
Cdd:pfam15921 643 ERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE 677
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
253-880 |
8.24e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 8.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 253 QKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQLSEK--TSEQLRRKGEQCQSEVEARQQLE---ASLR 327
Cdd:pfam05483 103 QKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENnaTRHLCNLLKETCARSAEKTKKYEyerEETR 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 328 TLEMELKTVKSHLNQVLEERNETQRQLSREQNARMLQDGILASHLCK--QKEIEMTQKKMTSEVSVSHEKE---KDLLHK 402
Cdd:pfam05483 183 QVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEeyKKEINDKEKQVSLLLIQITEKEnkmKDLTFL 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 403 NQRLQDEVAVL----RLEMDTIKSHNQEKE--KRYLEDIKIANEKNDNLQRMVKLNEETFTKTIFQYTGQ---------- 466
Cdd:pfam05483 263 LEESRDKANQLeektKLQDENLKELIEKKDhlTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEkeaqmeelnk 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 467 --------LNSLKAENTMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQrardewfRVKDKMN 538
Cdd:pfam05483 343 akaahsfvVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE-------ELKKILA 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 539 FDMSNLRDNNEV--LSQQLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQtqcQMKEVEHMFQDEQGKVSKFMG 616
Cdd:pfam05483 416 EDEKLLDEKKQFekIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLK---EVEDLKTELEKEKLKNIELTA 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 617 KQEsieerlaQLQSENTLLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQA-ESQRHSLR--LEDRNQELVSECSHLR 693
Cdd:pfam05483 493 HCD-------KLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENlEEKEMNLRdeLESVREEFIQKGDEVK 565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 694 ERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKK--------------KLGQLRSQL 759
Cdd:pfam05483 566 CKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKkgsaenkqlnayeiKVNKLELEL 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 760 QEARDQHREAVHHAEK--------MEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSR-VNLSEEDKEKLQKLTELKES 830
Cdd:pfam05483 646 ASAKQKFEEIIDNYQKeiedkkisEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEmVALMEKHKHQYDKIIEERDS 725
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 568941656 831 -LECTVDQEQKRSS---ALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKNN 880
Cdd:pfam05483 726 eLGLYKNKEQEQSSakaALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKEN 779
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
331-973 |
8.82e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 8.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 331 MELKTVKSHLNQVLEERNETqrqLSREQNARMLQDGILASHLCKQKEIEMTQKKMTSEVSVSHEKEKDLLHKNQRLQDEV 410
Cdd:TIGR01612 715 METATVELHLSNIENKKNEL---LDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEI 791
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 411 AVL---RLEMDTIKS----HNQEKEKRYLEDIKIANEKNDNLQRMVKLNEETFTKTIFQYTGQLNSLKaENTMLSSKLDN 483
Cdd:TIGR01612 792 KNHyndQINIDNIKDedakQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCK-EKIDSEHEQFA 870
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 484 EKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQ-----RARDEWFRVKDKMNFDMSNLRDNNEVLSQQLSK- 557
Cdd:TIGR01612 871 ELTNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIEEEYQnintlKKVDEYIKICENTKESIEKFHNKQNILKEILNKn 950
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 558 --TERKLNSLEIEFHHTKDE-LREKTLALKHAQRDLSqtqcqmkevehmFQDEQGKVSKFMGKQESIEERLAQlQSENTL 634
Cdd:TIGR01612 951 idTIKESNLIEKSYKDKFDNtLIDKINELDKAFKDAS------------LNDYEAKNNELIKYFNDLKANLGK-NKENML 1017
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 635 LRQ------QLDDAANKAESKDKTIVNIQDQFQDVLTRFQAESQRH-SLRLEDRNQELVsecshlrerlcqyenEKAERE 707
Cdd:TIGR01612 1018 YHQfdekekATNDIEQKIEDANKNIPNIEIAIHTSIYNIIDEIEKEiGKNIELLNKEIL---------------EEAEIN 1082
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 708 VVVRQlqqELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLE--- 784
Cdd:TIGR01612 1083 ITNFN---EIKEKLKHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEdva 1159
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 785 -----------LEKSKFEITIK--KQSEEIDQLQENLSRVNLSEEDKEKLQKLTELKES---------LEcTVDQEQKRS 842
Cdd:TIGR01612 1160 dkaisnddpeeIEKKIENIVTKidKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSygknlgklfLE-KIDEEKKKS 1238
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 843 SALEKELAEFKEVLKMTKKELNEYENrELNLRQDIKNNHLEMDIPVS------TLIKKIDDLTAKLEtasSKCLHLGKKN 916
Cdd:TIGR01612 1239 EHMIKAMEAYIEDLDEIKEKSPEIEN-EMGIEMDIKAEMETFNISHDddkdhhIISKKHDENISDIR---EKSLKIIEDF 1314
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568941656 917 QLLQQELLLMRTIQKKCGKLEKNKKQLEQ---EVVNLRSHMEKNMVEH--SQAQQYAREVEE 973
Cdd:TIGR01612 1315 SEESDINDIKKELQKNLLDAQKHNSDINLylnEIANIYNILKLNKIKKiiDEVKEYTKEIEE 1376
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
634-831 |
9.00e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 9.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 634 LLRQQLDDAANKAESKD-KTIVNIQDQFQDVLTRFQAESQRhslrlEDRNQELVSECSHLRERLCQYENEKAEREVVVRQ 712
Cdd:COG4717 46 MLLERLEKEADELFKPQgRKPELNLKELKELEEELKEAEEK-----EEEYAELQEELEELEEELEELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 713 LQQELADTLKKQSMSEASLEVSS------------RYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHA-EKMEDH 779
Cdd:COG4717 121 LEKLLQLLPLYQELEALEAELAElperleeleerlEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEE 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568941656 780 LQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLTELKESL 831
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLL 252
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
583-769 |
1.00e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 583 LKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAANKAESK----DKTIVNIQ- 657
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERreelGERARALYr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 658 --------------DQFQDVLTRFQAESqrhslRLEDRNQELVSECSHLRERLcqyENEKAEREVVVRQLQQELADTLKK 723
Cdd:COG3883 98 sggsvsyldvllgsESFSDFLDRLSALS-----KIADADADLLEELKADKAEL---EAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568941656 724 QSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREA 769
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
788-1090 |
1.20e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 788 SKFEITIKKQSEEIDQLQENLSRVNLSE--------------EDKEKLQKLTELKESLECTVDQEQKRS-----SALEKE 848
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIdekrqqlerlrrerEKAERYQALLKEKREYEGYELLKEKEAlerqkEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 849 LAEFKEVLKMTKKELNEYENRELNLRQDIKNNHLEMDIPVS----TLIKKIDDLTAKLETASSKclhLGKKNQLLQQELL 924
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlRVKEKIGELEAEIASLERS---IAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 925 LMRTIQKKCGKLEKNKKQLEQEVVNLRSHMEKNMVEHSQaqqyAREVEERARQDLVEKLKQVNLFLQAQAASQESLEQLR 1004
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE----LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 1005 ENSNASVRSQMEL--RIKDLESQLYRMKAqedfdkiELEKYKQLYQEEFRARKSLSSKLNKTSEKLEEASSKLLLEEQQN 1082
Cdd:TIGR02169 399 REINELKRELDRLqeELQRLSEELADLNA-------AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
....*...
gi 568941656 1083 RSLLSTLS 1090
Cdd:TIGR02169 472 YDLKEEYD 479
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
741-908 |
1.36e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 741 LEEEARDLKKKLGQLRSQLQEARDQHreavhhaEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEdkek 820
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARL-------EAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKE---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 821 LQKLTELKESLEctvdqeqKRSSALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKNNHLEMDIPVSTLIKKIDDLTA 900
Cdd:COG1579 91 YEALQKEIESLK-------RRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
....*...
gi 568941656 901 KLETASSK 908
Cdd:COG1579 164 EREELAAK 171
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
744-1027 |
2.02e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.58 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 744 EARDLKKKLGQLRSQLQEARDQHREAVH---HAEKMEDHLQKLELEKSKFEIT----IKKQSEEIDQLQ-ENLSRVNLSE 815
Cdd:PLN02939 164 EKEALQGKINILEMRLSETDARIKLAAQekiHVEILEEQLEKLRNELLIRGATeglcVHSLSKELDVLKeENMLLKDDIQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 816 EDKEKLQKLTELKESLectvdqeqkrsSALEKELAEFKEVLKmtkkelnEYENRELNLRQDI-KNNHLEMDIpvstLIKK 894
Cdd:PLN02939 244 FLKAELIEVAETEERV-----------FKLEKERSLLDASLR-------ELESKFIVAQEDVsKLSPLQYDC----WWEK 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 895 IDDLTAKLETASSKCLHlgkknqlLQQELLLMRTIQKKCGKLEKNKKqlEQEVVNLRSHMEKNMvehsqaQQYAREVEER 974
Cdd:PLN02939 302 VENLQDLLDRATNQVEK-------AALVLDQNQDLRDKVDKLEASLK--EANVSKFSSYKVELL------QQKLKLLEER 366
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 568941656 975 ARQDLVEKLKQVNLFLQAQAASQESLEQLRENSNasvRSQMELRIKDLESQLY 1027
Cdd:PLN02939 367 LQASDHEIHSYIQLYQESIKEFQDTLSKLKEESK---KRSLEHPADDMPSEFW 416
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
574-765 |
2.34e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 574 DELREKTLALKHAQRDLSQTQCQMKEV----EHM-FQDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAANKAES 648
Cdd:PRK04863 938 EQLKQDYQQAQQTQRDAKQQAFALTEVvqrrAHFsYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQ 1017
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 649 KDKTivniqdqFQDVLTRFQAESQRHslrledrnQELVSECSHLRERLCQYENEKAerevvvRQLQQELADTLKKQSMSE 728
Cdd:PRK04863 1018 YNQV-------LASLKSSYDAKRQML--------QELKQELQDLGVPADSGAEERA------RARRDELHARLSANRSRR 1076
|
170 180 190
....*....|....*....|....*....|....*..
gi 568941656 729 ASLEvssRYRSNLEEEARDLKKKLGQLRSQLQEARDQ 765
Cdd:PRK04863 1077 NQLE---KQLTFCEAEMDNLTKKLRKLERDYHEMREQ 1110
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
337-975 |
2.62e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 337 KSHLNQVLEERN----ETQRQLSREQNARMLQDGILASHL----CKQKEIEMTQKKMTSEVSVSHEKEKDLLHKNQRLQD 408
Cdd:pfam15921 73 KEHIERVLEEYShqvkDLQRRLNESNELHEKQKFYLRQSVidlqTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 409 EVAVLR-LEMDTIKSHNQEKEK----------------RYLEDIKIANEK----NDNLQRM---------VKLNEETFTK 458
Cdd:pfam15921 153 ELEAAKcLKEDMLEDSNTQIEQlrkmmlshegvlqeirSILVDFEEASGKkiyeHDSMSTMhfrslgsaiSKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 459 T------IFQYTGQLNSLKAENT-----MLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTakrDLEIAFQRAR 527
Cdd:pfam15921 233 IsylkgrIFPVEDQLEALKSESQnkielLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQS---QLEIIQEQAR 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 528 DE---WFRVKDKMNFDMSNLR-----------DNNEVLSQQL---------SKTER------------KLNSLEIEFHHT 572
Cdd:pfam15921 310 NQnsmYMRQLSDLESTVSQLRselreakrmyeDKIEELEKQLvlanselteARTERdqfsqesgnlddQLQKLLADLHKR 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 573 KDELR-EK-------------TLALKHAQRDLSQTQCQMKEVEHMFQ----DEQGKVSKFM----GKQESIEE---RLAQ 627
Cdd:pfam15921 390 EKELSlEKeqnkrlwdrdtgnSITIDHLRRELDDRNMEVQRLEALLKamksECQGQMERQMaaiqGKNESLEKvssLTAQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 628 LQSENTLLRQQLDDAANKA---ESKDKTIVNIQDQFQDVLTRFQAESQRHSlRLEDRNQELVSECSHLRERLCQYENEKA 704
Cdd:pfam15921 470 LESTKEMLRKVVEELTAKKmtlESSERTVSDLTASLQEKERAIEATNAEIT-KLRSRVDLKLQELQHLKNEGDHLRNVQT 548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 705 EREVVVRQL--QQELADTLKKQSMSEASL-EVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQ 781
Cdd:pfam15921 549 ECEALKLQMaeKDKVIEILRQQIENMTQLvGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVS 628
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 782 KLELEKSKFeitIKKQSEEIDQLQE-NLSRVNLSEEDKEKLQKLTELKESLECTVDQEQKRSSALEKELAEFKEVLKMTK 860
Cdd:pfam15921 629 DLELEKVKL---VNAGSERLRAVKDiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ 705
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 861 KELNEYENRELNLRQdiKNNH-----LEMDIPVSTLIKKIDDLTAKLE------TASSKCLHLGK--KNQLLQQELLLMR 927
Cdd:pfam15921 706 SELEQTRNTLKSMEG--SDGHamkvaMGMQKQITAKRGQIDALQSKIQfleeamTNANKEKHFLKeeKNKLSQELSTVAT 783
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 568941656 928 TIQKKCGKLE---KNKKQLEQEVVNLRSHMEKNMVEHSQAQQYAREVEERA 975
Cdd:pfam15921 784 EKNKMAGELEvlrSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQES 834
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
225-897 |
2.95e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 225 KRLIELKRSHCELLTGKLKRMENKYKGlQKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQL---SEKT 301
Cdd:PTZ00121 1212 RKAEEARKAEDAKKAEAVKKAEEAKKD-AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELkkaEEKK 1290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 302 SEQLRRKGEQCQSEVEARQQLEASLRTleMELKTVKSHLNQVLEERNETQRQLSREQNARMLQDGILASHLCKQKEIEMT 381
Cdd:PTZ00121 1291 KADEAKKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 382 QKKMTSEVSVSHE---KEKDLLHKNQRLQDEVAVLRLEMDTIKSHNQEKE-----KRYLEDIKIANEKNDNLQRMVKLnE 453
Cdd:PTZ00121 1369 AEKKKEEAKKKADaakKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKkadeaKKKAEEKKKADEAKKKAEEAKKA-D 1447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 454 ETFTKTIFQYTGQLNSLKAENTMLSSKLDN---EKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEW 530
Cdd:PTZ00121 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKkaeEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA 1527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 531 FRVKDKMNFDmsNLRDNNEVL-SQQLSKTERKLNSLEI-EFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQ 608
Cdd:PTZ00121 1528 KKAEEAKKAD--EAKKAEEKKkADELKKAEELKKAEEKkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 609 GKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAANKAESKDKTivnIQDQFQDVLTRFQAESQRHSLRLEDRNQELVSE 688
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA---EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 689 CSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARD-QHR 767
Cdd:PTZ00121 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKiAHL 1762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 768 EAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENL--SRVNLSEEDKEKLQKLTELKESLECTVDQEQKRSSAL 845
Cdd:PTZ00121 1763 KKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIfdNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQ 1842
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 568941656 846 EKELAEFKEVLKMTKKELNEYENRELNLRQDIKN-NHLEMDIPVSTLIKKIDD 897
Cdd:PTZ00121 1843 LEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLkEDDEEEIEEADEIEKIDK 1895
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
619-1091 |
2.96e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 619 ESIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNIQdqfqdvLTRFQAESQRHSLR-----LEDRNQELVSECSHLR 693
Cdd:pfam01576 85 EEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQ------LEKVTTEAKIKKLEedillLEDQNSKLSKERKLLE 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 694 ERLCQYENEKAEREVVVRQLQQ----------ELADTLKKQSMSEASLEVSSRyrsNLEEEARDLKKKLGQLRSQLQEAR 763
Cdd:pfam01576 159 ERISEFTSNLAEEEEKAKSLSKlknkheamisDLEERLKKEEKGRQELEKAKR---KLEGESTDLQEQIAELQAQIAELR 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 764 DQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQK---------LTELKESLECT 834
Cdd:pfam01576 236 AQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRdlgeelealKTELEDTLDTT 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 835 VDQEQKRSSAlEKELAEFKEVLKmtkKELNEYENRELNLRQdiKNNhlemdipvstliKKIDDLTAKLETASSKCLHLGK 914
Cdd:pfam01576 316 AAQQELRSKR-EQEVTELKKALE---EETRSHEAQLQEMRQ--KHT------------QALEELTEQLEQAKRNKANLEK 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 915 KN----QLLQQELLLMRTIQKKCGKLEKNKKQLEQEVVNLrshmeknMVEHSQAqqyareveERARQDLVEKLKQVNLFL 990
Cdd:pfam01576 378 AKqaleSENAELQAELRTLQQAKQDSEHKRKKLEGQLQEL-------QARLSES--------ERQRAELAEKLSKLQSEL 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 991 QAQAASQESLEqlrensNASVRSQMELriKDLESQLyrmkaqedfdkielEKYKQLYQEEFRARKSLSSKLNKTSEKLEE 1070
Cdd:pfam01576 443 ESVSSLLNEAE------GKNIKLSKDV--SSLESQL--------------QDTQELLQEETRQKLNLSTRLRQLEDERNS 500
|
490 500
....*....|....*....|.
gi 568941656 1071 ASSKLLLEEQQNRSLLSTLST 1091
Cdd:pfam01576 501 LQEQLEEEEEAKRNVERQLST 521
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
695-856 |
3.51e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 695 RLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQhREavhhAE 774
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN-KE----YE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 775 KMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRvnLSEEDKEKLQKLTELKESLECTVDQEQKRSSALEKELAEFKE 854
Cdd:COG1579 93 ALQKEIESLKRRISDLEDEILELMERIEELEEELAE--LEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
..
gi 568941656 855 VL 856
Cdd:COG1579 171 KI 172
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
617-844 |
3.65e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 617 KQESIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNIQDQfqdvLTRFQAESQRHSLRLEDRNQELVSECSHLRERL 696
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE----LEALQAEIDKLQAEIAEAEAEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 697 -CQYENEKAEREVVVRQLQQELADTLKKQSMseasLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAvhhAEK 775
Cdd:COG3883 93 rALYRSGGSVSYLDVLLGSESFSDFLDRLSA----LSKIADADADLLEELKADKAELEAKKAELEAKLAELEAL---KAE 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568941656 776 MEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLTELKESLECTVDQEQKRSSA 844
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAA 234
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
738-995 |
3.86e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 738 RSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLELEKSKFEitikkqsEEIDQLQENLSRVNLSEED 817
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELE-------EELEELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 818 KEKLQKLTELKESLEctvdqeqkrssALEKELAEFKEVLKMTKKELNEYENRELNLRQdiknnhlemdipvstLIKKIDD 897
Cdd:COG4717 121 LEKLLQLLPLYQELE-----------ALEAELAELPERLEELEERLEELRELEEELEE---------------LEAELAE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 898 LTAKLETAsskclhlgkKNQLLQQELLLMRTIQKKCGKLEKNKKQLEQEVVNLRSHMEknmvehSQAQQYAREVEERARQ 977
Cdd:COG4717 175 LQEELEEL---------LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE------ELEEELEQLENELEAA 239
|
250
....*....|....*...
gi 568941656 978 DLVEKLKQVNLFLQAQAA 995
Cdd:COG4717 240 ALEERLKEARLLLLIAAA 257
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
510-763 |
4.21e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 510 AEIQTAKRDLEIAFQRARDewFRVKDkmnfDMSNLRDNNEVLSQQLSKTERKLNSLEIEfhhtkdeLREKTLALKHAQRD 589
Cdd:COG3206 182 EQLPELRKELEEAEAALEE--FRQKN----GLVDLSEEAKLLLQQLSELESQLAEARAE-------LAEAEARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 590 LSQTQCQMKEVehmfqdeqgkvskfmgkqeSIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQA 669
Cdd:COG3206 249 LGSGPDALPEL-------------------LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 670 ESQRhslrledrnqelvsecshlreRLCQYENEKAEREVVVRQLQQELADtLKKQSMSEASLEVssRYRsNLEEEARDLK 749
Cdd:COG3206 310 EAQR---------------------ILASLEAELEALQAREASLQAQLAQ-LEARLAELPELEA--ELR-RLEREVEVAR 364
|
250
....*....|....
gi 568941656 750 KKLGQLRSQLQEAR 763
Cdd:COG3206 365 ELYESLLQRLEEAR 378
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
523-1075 |
4.24e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 523 FQRARDEWFRVKDKMNFDMSNLRDnnevLSQQLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEH 602
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEK----FIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 603 M---FQDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAankaESKDKTIVNIQDQFQD--VLTRFQAESQRHSLR 677
Cdd:PRK03918 236 LkeeIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL----EEKVKELKELKEKAEEyiKLSEFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 678 LEDRNQELVSECSHLRERLCQYENEKAErevvVRQLQQELADTLKKQSMSEASLEVSSRYRSnLEEEARDLKKKLGQLrs 757
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERIKELEEKEER----LEELKKKLKELEKRLEELEERHELYEEAKA-KKEELERLKKRLTGL-- 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 758 QLQEARDQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQEN-----LSRVNLSEEDKEKLqkLTELKESLe 832
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELTEEHRKEL--LEEYTAEL- 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 833 ctvdqeqkrsSALEKELAEFKEVLKMTKKELNEYENRELNLRQDIKNNHLEMDIPV------STLIKKIDDLTAKLETAS 906
Cdd:PRK03918 462 ----------KRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEleeklkKYNLEELEKKAEEYEKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 907 SKCLHLGKKNQLLQQELLLMRTIQKKCGKLEKNKKQLEQEVVNLRSHMEKNMVEH-SQAQQYAREVEERARQDLveKLKQ 985
Cdd:PRK03918 532 EKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKELEPFYNEYL--ELKD 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 986 VNLFLQAQAASQESLEQLRENSNASVrSQMELRIKDLESQLyrMKAQEDFDKIELEKYKQLYQEEFRARKSLSSKLNKTS 1065
Cdd:PRK03918 610 AEKELEREEKELKKLEEELDKAFEEL-AETEKRLEELRKEL--EELEKKYSEEEYEELREEYLELSRELAGLRAELEELE 686
|
570
....*....|
gi 568941656 1066 EKLEEASSKL 1075
Cdd:PRK03918 687 KRREEIKKTL 696
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
892-1071 |
4.58e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 892 IKKIDDLTAKLETASSKCLHLGKKNQLLQQELLLMRTIQKKCGKL------EKNKKQLEQEVVNL---RSHMEKNMVEHS 962
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLaeyswdEIDVASAEREIAELeaeLERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 963 QAQQYAREVEERaRQDLVEKLKQVNLFLQAQAASQESLEQLRENSNASVRSQMELRIKDLESQLYRMKAQEDFDKIELEK 1042
Cdd:COG4913 689 ALEEQLEELEAE-LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVEREL 767
|
170 180
....*....|....*....|....*....
gi 568941656 1043 YKQLYQEefraRKSLSSKLNKTSEKLEEA 1071
Cdd:COG4913 768 RENLEER----IDALRARLNRAEEELERA 792
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
582-777 |
4.80e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 582 ALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQ-------LQSENTLLRQQLDDAANKAESKDKTIV 654
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAlarriraLEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 655 NIQDQFQDVLTRFQAESQRHSLRL---------EDRNQELVSECS-HLRERLCQYENEKAEREVVVRQLQQE---LADTL 721
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALllspedfldAVRRLQYLKYLApARREQAEELRADLAELAALRAELEAEraeLEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568941656 722 KKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKME 777
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
739-854 |
5.67e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 5.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 739 SNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLELE-KSKFEITIKKQSEEIDQLQENLSRVNLSEED 817
Cdd:PRK00409 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEaEKEAQQAIKEAKKEADEIIKELRQLQKGGYA 602
|
90 100 110
....*....|....*....|....*....|....*..
gi 568941656 818 KEKLQKLTELKESLECTVDQEQKRSSALEKELAEFKE 854
Cdd:PRK00409 603 SVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
680-869 |
6.68e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.49 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 680 DRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQL 759
Cdd:pfam05557 48 DRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELEL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 760 QEARDQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLTELKESLEcTVDQEQ 839
Cdd:pfam05557 128 QSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIP-ELEKEL 206
|
170 180 190
....*....|....*....|....*....|
gi 568941656 840 KRSSALEKELAEFKEVLKMTKKELNEYENR 869
Cdd:pfam05557 207 ERLREHNKHLNENIENKLLLKEEVEDLKRK 236
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
732-964 |
6.99e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 6.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 732 EVSSRYRSNLEEEARDLKKKLGQLRSQLQEAR-DQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSR 810
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALDKLRSYLPKLNpLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 811 VnlsEEDKEKLQKLTELKESLEC------------TVDQEQKRSSALEKELAEFKE---------VLKMTKKELNEYENR 869
Cdd:PRK05771 119 L---EQEIERLEPWGNFDLDLSLllgfkyvsvfvgTVPEDKLEELKLESDVENVEYistdkgyvyVVVVVLKELSDEVEE 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 870 ELNlRQDIKNNHLEMDIPVSTLIKKIDDLTAKLETASSKCLHlgkknqllqqelllmrtiqkkcgKLEKNKKQLEQEVVN 949
Cdd:PRK05771 196 ELK-KLGFERLELEEEGTPSELIREIKEELEEIEKERESLLE-----------------------ELKELAKKYLEELLA 251
|
250
....*....|....*
gi 568941656 950 LRSHMEkNMVEHSQA 964
Cdd:PRK05771 252 LYEYLE-IELERAEA 265
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
553-717 |
7.53e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 7.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 553 QQLSKTERKLNSLEIEFHHtKDELREKTLALKHAQRDLSQTQCQMKEV----EHM-FQDEQGKVSKFMGKQESIEERLAQ 627
Cdd:COG3096 917 KALAQLEPLVAVLQSDPEQ-FEQLQADYLQAKEQQRRLKQQIFALSEVvqrrPHFsYEDAVGLLGENSDLNEKLRARLEQ 995
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 628 LQSENTLLRQQLDDAANKAESKDKTIVNIQDQF---QDVLTRFQAESQRHSLRL--------EDRNQELVSECSHLRERL 696
Cdd:COG3096 996 AEEARREAREQLRQAQAQYSQYNQVLASLKSSRdakQQTLQELEQELEELGVQAdaeaeeraRIRRDELHEELSQNRSRR 1075
|
170 180
....*....|....*....|.
gi 568941656 697 CQYENEKAEREVVVRQLQQEL 717
Cdd:COG3096 1076 SQLEKQLTRCEAEMDSLQKRL 1096
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
248-857 |
8.44e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 8.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 248 KYKGLQKEMSETEEVKSRLEHEKVGWEQElcRLRFALKQEEEKRRSADQlsektSEQLRRKGEQCQSEV-EARQQL---E 323
Cdd:pfam12128 242 EFTKLQQEFNTLESAELRLSHLHFGYKSD--ETLIASRQEERQETSAEL-----NQLLRTLDDQWKEKRdELNGELsaaD 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 324 ASLRTLEMELKTVKSHLNQVLEERNET----QRQLSREQNARMLQDGILASHLCKQKEIEMTQKKMTSEVSVSHEKEKDL 399
Cdd:pfam12128 315 AAVAKDRSELEALEDQHGAFLDADIETaaadQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAG 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 400 LHKNQRLQDEVAVLRLEMDTIKSHNQEKEKRYLEDIKIANEKNDNLQRMVKLNEETFTKTIFQYTGQLNSLKAENTMLSS 479
Cdd:pfam12128 395 IKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 480 KLDNEKQ----NKERLETDVESFRSRLASALHDH-------AEIQTAKRDLE----------IAFQRA-----RDEWFRV 533
Cdd:pfam12128 475 RAREEQEaanaEVERLQSELRQARKRRDQASEALrqasrrlEERQSALDELElqlfpqagtlLHFLRKeapdwEQSIGKV 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 534 KDKMNFDMSNL--RDNNEVLSQQLSKTERKLNSLEI---EFHHTKDELREKTLALKHAQRDLSQTQCQMKEvehmfqdEQ 608
Cdd:pfam12128 555 ISPELLHRTDLdpEVWDGSVGGELNLYGVKLDLKRIdvpEWAASEEELRERLDKAEEALQSAREKQAAAEE-------QL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 609 GKVSKFMGKQESIEERLAQL--QSENTLLR-----QQLDDAANKA--ESKDKTIVNIQD----------QFQDVLTRFQA 669
Cdd:pfam12128 628 VQANGELEKASREETFARTAlkNARLDLRRlfdekQSEKDKKNKAlaERKDSANERLNSleaqlkqldkKHQAWLEEQKE 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 670 ESQRHSLRLEDRNQELVSECSHLRERLCQ-YENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLE---EEA 745
Cdd:pfam12128 708 QKREARTEKQAYWQVVEGALDAQLALLKAaIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLErkiERI 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 746 RDLKKKLGQLRSQLQEARDQHREAV--------HHAEKMEDHL-----------QKLELEKSKFEITIKKQSEEIDQLQE 806
Cdd:pfam12128 788 AVRRQEVLRYFDWYQETWLQRRPRLatqlsnieRAISELQQQLarliadtklrrAKLEMERKASEKQQVRLSENLRGLRC 867
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 568941656 807 NLSRVNLSEEDKEKLQKLTELKESLECTVDQEQKR---SSALEKELAEFKEVLK 857
Cdd:pfam12128 868 EMSKLATLKEDANSEQAQGSIGERLAQLEDLKLKRdylSESVKKYVEHFKNVIA 921
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
437-857 |
9.13e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 9.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 437 IANEKNDNLQRMVKLNEETFTKTifqytGQLNSLKAENTMLSSKLDNEKQNKERLETDVESFRSRLASAlhdhaeiQTAK 516
Cdd:PRK04863 277 HANERRVHLEEALELRRELYTSR-----RQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLV-------QTAL 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 517 RDLEiAFQRARDEWFRVKDKmnfdmsnLRDNNEVL---SQQLSKTERKLNSLEIEFHHTK----------DELREKTLAL 583
Cdd:PRK04863 345 RQQE-KIERYQADLEELEER-------LEEQNEVVeeaDEQQEENEARAEAAEEEVDELKsqladyqqalDVQQTRAIQY 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 584 KHAQRDL--SQTQCQMKEVEhmfqdeqgkvskfmgkQESIEERLAQLQSENTLLRQQLDDAANKAESKDktivNIQDQFQ 661
Cdd:PRK04863 417 QQAVQALerAKQLCGLPDLT----------------ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQ----AAHSQFE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 662 dvltrfQAESQRHSLRLE-DRNQELvsecSHLRERLCQYENEK--AEREVVVRQLQQELADTLKKQSMSEASL-EVSSRY 737
Cdd:PRK04863 477 ------QAYQLVRKIAGEvSRSEAW----DVARELLRRLREQRhlAEQLQQLRMRLSELEQRLRQQQRAERLLaEFCKRL 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 738 RSNLEEEArDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLELEKSKFEitikKQSEEIDQLQENLSRVN-LSEE 816
Cdd:PRK04863 547 GKNLDDED-ELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA----ARAPAWLAAQDALARLReQSGE 621
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 568941656 817 DKEKLQKLTELKESLectvdQEQKRSSALEK-ELAEFKEVLK 857
Cdd:PRK04863 622 EFEDSQDVTEYMQQL-----LERERELTVERdELAARKQALD 658
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
502-765 |
9.19e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 9.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 502 LASALHDHAEIQTAKRDLEiAFQRARDEWFRVKDKMNFDMSNLRDNNEVLSQQLSKTERKLNSLEIEFHHTKDELREKTL 581
Cdd:COG4942 12 ALAAAAQADAAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 582 ALKHAQRDLSQTQCQMKevehmfqdEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAANKAeskdktivnIQDQFQ 661
Cdd:COG4942 91 EIAELRAELEAQKEELA--------ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA---------RREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 662 DvLTRFQAESQRHSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQsmseaslevssryrSNL 741
Cdd:COG4942 154 E-LRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL--------------AEL 218
|
250 260
....*....|....*....|....
gi 568941656 742 EEEARDLKKKLGQLRSQLQEARDQ 765
Cdd:COG4942 219 QQEAEELEALIARLEAEAAAAAER 242
|
|
| TMCO5 |
pfam14992 |
TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing ... |
742-826 |
9.72e-03 |
|
TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing proteins 5A and 5B.
Pssm-ID: 464427 [Multi-domain] Cd Length: 278 Bit Score: 39.32 E-value: 9.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568941656 742 EEEARDLKKKLGQLRSqlqEARDQHREAVHHAE-KMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSR---------- 810
Cdd:pfam14992 30 EEEIQSLEREITLTRS---LAEDEEREELNFTImEKEDALQELELETAKLEKKNEILVKSVMELQRKLSRksdkntgleq 106
|
90
....*....|....*....
gi 568941656 811 ---VNLSEEDKEKLQKLTE 826
Cdd:pfam14992 107 etlKQMLEELKVKLQQSEE 125
|
|
| |
