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Conserved domains on  [gi|568961912|ref|XP_006511435|]
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KH domain-containing protein 3 isoform X1 [Mus musculus]

Protein Classification

FILIA_N_like domain-containing protein( domain architecture ID 11240190)

FILIA_N_like domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MOEP19 pfam16005
KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The ...
 28-112 4.68e-41

KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage.


:

Pssm-ID: 464969  Cd Length: 85  Bit Score: 140.85  E-value: 4.68e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912   28 KLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAH 107
Cdd:pfam16005   1 KRPWWFPPEELKDPLVFYLEAWLLELIFGPDGERIPHIEWMSQTLLQVDVVDSEGLAEITIFGRPRYQKRVKKMLLSLAS 80


                  ....*
gi 568961912  108 YCRMK 112
Cdd:pfam16005  81 WHRER 85
rne super family cl35953
ribonuclease E; Reviewed
 121-335 1.70e-12

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 69.68  E-value: 1.70e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  121 GVERRRMAAHKAATQ-PAPVKVREAAPRPASVKV--------PETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEE 191
Cdd:PRK10811  808 GQRRRRYRDERYPTQsPMPLTVACASPEMASGKVwirypvvrPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPV 887

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  192 VREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQ-ASVQAVREAATRPAPGKVRKAATQPAPVQVCQ 270
Cdd:PRK10811  888 VEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESdVAVAQEVAEHAEPVVEPQDETADIEEAAETAE 967

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961912  271 EATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAA----TQPAPGKVSDAATQS 335
Cdd:PRK10811  968 VVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATapmtRAPAPEYVPEAPRHS 1036
 
Name Accession Description Interval E-value
MOEP19 pfam16005
KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The ...
 28-112 4.68e-41

KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage.


Pssm-ID: 464969  Cd Length: 85  Bit Score: 140.85  E-value: 4.68e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912   28 KLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAH 107
Cdd:pfam16005   1 KRPWWFPPEELKDPLVFYLEAWLLELIFGPDGERIPHIEWMSQTLLQVDVVDSEGLAEITIFGRPRYQKRVKKMLLSLAS 80


                  ....*
gi 568961912  108 YCRMK 112
Cdd:pfam16005  81 WHRER 85
FILIA_N_like cd12795
FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and ...
 12-118 1.73e-38

FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and related domains. FILIA is expressed in oocytes and embryo, and contains an atypical KH domain at the N-terminus with an N-terminal extension that interacts with RNA. RNA-binding may mediate RNA transcript regulation in oogenesis and embryogenesis. FILIA-N differs from typical KH domains by forming a stable dimer in solution and crystal structure.


Pssm-ID: 240613 [Multi-domain]  Cd Length: 114  Bit Score: 135.14  E-value: 1.73e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  12 PLDHKQGTLFEIIGEPKLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP 91
Cdd:cd12795    1 QLREKVPMSMEVLGLVKRPWWFRPEDLKDPLVLYVEAWLLEKIFGPDGALIPGIEWESQTLLQVEAWDSSGLAEITVFGR 80

                         90       100
                 ....*....|....*....|....*..
gi 568961912  92 PPFRRDVDRMLTDLAHYCRMKLMEKAL 118
Cdd:cd12795   81 PRARRRVKRMLLNLAAWHREHRARGRE 107
rne PRK10811
ribonuclease E; Reviewed
 121-335 1.70e-12

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 69.68  E-value: 1.70e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  121 GVERRRMAAHKAATQ-PAPVKVREAAPRPASVKV--------PETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEE 191
Cdd:PRK10811  808 GQRRRRYRDERYPTQsPMPLTVACASPEMASGKVwirypvvrPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPV 887

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  192 VREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQ-ASVQAVREAATRPAPGKVRKAATQPAPVQVCQ 270
Cdd:PRK10811  888 VEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESdVAVAQEVAEHAEPVVEPQDETADIEEAAETAE 967

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961912  271 EATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAA----TQPAPGKVSDAATQS 335
Cdd:PRK10811  968 VVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATapmtRAPAPEYVPEAPRHS 1036
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
116-186 9.95e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 41.52  E-value: 9.95e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961912 116 KALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPeTATQPAPVKVREAAPQPAPVQEVREAAPQQA 186
Cdd:COG5373   31 EELEAELAEAAEAASAPAEPEPEAAAAATAAAPEAAPAP-VPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
 
Name Accession Description Interval E-value
MOEP19 pfam16005
KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The ...
 28-112 4.68e-41

KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage.


Pssm-ID: 464969  Cd Length: 85  Bit Score: 140.85  E-value: 4.68e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912   28 KLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAH 107
Cdd:pfam16005   1 KRPWWFPPEELKDPLVFYLEAWLLELIFGPDGERIPHIEWMSQTLLQVDVVDSEGLAEITIFGRPRYQKRVKKMLLSLAS 80


                  ....*
gi 568961912  108 YCRMK 112
Cdd:pfam16005  81 WHRER 85
FILIA_N_like cd12795
FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and ...
 12-118 1.73e-38

FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and related domains. FILIA is expressed in oocytes and embryo, and contains an atypical KH domain at the N-terminus with an N-terminal extension that interacts with RNA. RNA-binding may mediate RNA transcript regulation in oogenesis and embryogenesis. FILIA-N differs from typical KH domains by forming a stable dimer in solution and crystal structure.


Pssm-ID: 240613 [Multi-domain]  Cd Length: 114  Bit Score: 135.14  E-value: 1.73e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  12 PLDHKQGTLFEIIGEPKLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP 91
Cdd:cd12795    1 QLREKVPMSMEVLGLVKRPWWFRPEDLKDPLVLYVEAWLLEKIFGPDGALIPGIEWESQTLLQVEAWDSSGLAEITVFGR 80

                         90       100
                 ....*....|....*....|....*..
gi 568961912  92 PPFRRDVDRMLTDLAHYCRMKLMEKAL 118
Cdd:cd12795   81 PRARRRVKRMLLNLAAWHREHRARGRE 107
KH-I_KHDC1_like cd22440
type I K homology (KH) RNA-binding domain found in KHDC1-like family; The KHDC1-like family ...
 38-105 1.19e-30

type I K homology (KH) RNA-binding domain found in KHDC1-like family; The KHDC1-like family corresponds to a group of structurally related proteins characterized by an atypical RNA-binding KH domain. They are unique to eutherian mammals and specifically expressed in oocytes and/or embryonic stem cells. Family members include KH homology domain-containing protein 1 (KHDC1), KHDC1-like protein (KHDC1L), KHDC3-like protein (KHDC3L, also called ES cell-associated transcript 1 protein or ECAT1), developmental pluripotency-associated 5 protein (DPPA5, also called embryonal stem cell-specific gene 1 protein or ESG-1), Oocyte-expressed protein (OOEP, also called KH homology domain-containing protein 2 or KHDC2, or Oocyte- and embryo-specific protein 19 or OEP19). KHDC3L is essential for human oocyte maturation and pre-implantation development of the resulting embryos. DPPA5 is involved in the maintenance of embryonic stem (ES) cell pluripotency. OOEP plays an essential role for zygotes to progress beyond the first embryonic cell divisions.


Pssm-ID: 411868  Cd Length: 68  Bit Score: 112.78  E-value: 1.19e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961912  38 LEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDL 105
Cdd:cd22440    1 LQDPSVFHVEARLLEKIFGPDGTLIPHLEQESHTLIHVDRWDPEGKAEITIFGPPRYRQRAKWMLQCL 68
rne PRK10811
ribonuclease E; Reviewed
 121-335 1.70e-12

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 69.68  E-value: 1.70e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  121 GVERRRMAAHKAATQ-PAPVKVREAAPRPASVKV--------PETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEE 191
Cdd:PRK10811  808 GQRRRRYRDERYPTQsPMPLTVACASPEMASGKVwirypvvrPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPV 887

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  192 VREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQ-ASVQAVREAATRPAPGKVRKAATQPAPVQVCQ 270
Cdd:PRK10811  888 VEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESdVAVAQEVAEHAEPVVEPQDETADIEEAAETAE 967

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961912  271 EATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAA----TQPAPGKVSDAATQS 335
Cdd:PRK10811  968 VVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATapmtRAPAPEYVPEAPRHS 1036
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
143-359 1.62e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 56.81  E-value: 1.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 143 EAAPRPASVkVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVSEAA 222
Cdd:PRK12323 371 GAGPATAAA-APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 223 TEQAPVqEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQLAPV 302
Cdd:PRK12323 450 PAPAPA-AAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPD 528

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 568961912 303 KVRKAATQLAPVKVHEAATQPAPGKVSDAATQSASVQVREAATQLSPVEATDTSQLA 359
Cdd:PRK12323 529 PATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALA 585
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 125-301 5.34e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 55.26  E-value: 5.34e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 125 RRMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPvkvreAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQE 204
Cdd:PRK07994 355 RMLAFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVA-----PPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQL 429

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 205 VREAATEQAPVQEvSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGkVRKAATQPAPVQVCQEATqlaPVKVREAA 284
Cdd:PRK07994 430 QRAQGATKAKKSE-PAAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVAT---PKALKKAL 504

                        170
                 ....*....|....*..
gi 568961912 285 TQPasgKVREAATQLAP 301
Cdd:PRK07994 505 EHE---KTPELAAKLAA 518
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
110-360 1.58e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 53.70  E-value: 1.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 110 RMKLMEKALEAG---VERRRMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQA 186
Cdd:PRK07003 354 RMLAFEPAVTGGgapGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPP 433

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 187 SVQEEVREAATEQAPVQEvrEAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATR-----PAPGKVRKAAT 261
Cdd:PRK07003 434 ATADRGDDAADGDAPVPA--KANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRaaapsAATPAAVPDAR 511

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 262 QPAPVQVCQEATQLAPVKVREAATQPASGK--------------VREAATQLAPVKVRKAATQLAPVKVHEAATQPAPGK 327
Cdd:PRK07003 512 APAAASREDAPAAAAPPAPEARPPTPAAAApaaraggaaaaldvLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPR 591

                        250       260       270
                 ....*....|....*....|....*....|...
gi 568961912 328 VsdaATQSASVQVREAATQLSPVEATDTSQLAQ 360
Cdd:PRK07003 592 V---AVQVPTPRARAATGDAPPNGAARAEQAAE 621
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 115-261 4.95e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 52.30  E-value: 4.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 115 EKALEAGVER--RRMAAHKAATQPAPvkvreAAPRPASvkvPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEV 192
Cdd:PRK07764 371 ERGLLARLERleRRLGVAGGAGAPAA-----AAPSAAA---AAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPP 442

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961912 193 REAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAAT 261
Cdd:PRK07764 443 SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 116-262 5.57e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 51.79  E-value: 5.57e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 116 KALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPeTATQPAPVkVREAAPQPAPVQEVREAAPQQASVQEEVREA 195
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQ-QAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961912 196 ATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQ 262
Cdd:PRK07994 440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEH 506
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 128-384 5.89e-07

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 52.01  E-value: 5.89e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  128 AAHKAATQ--PAPVK-VREAAPRPAS---VKVPETATQPAPvKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAP 201
Cdd:PRK10263  324 AAATTATQswAAPVEpVTQTPPVASVdvpPAQPTVAWQPVP-GPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQ 402

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  202 VQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPA---PVQVCQEATQLAPV 278
Cdd:PRK10263  403 PQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEqtyQQPAAQEPLYQQPQ 482

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  279 KVREAATQPASGKVREAATQLAP------VKVRKA--ATQLAP--VKVHEAATQPAPGKVSDAATQSASVQVREAATQLS 348
Cdd:PRK10263  483 PVEQQPVVEPEPVVEETKPARPPlyyfeeVEEKRAreREQLAAwyQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVS 562

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 568961912  349 PV-----EATDTSQLAQVKADEAFAQHTSGEAH-QVANGQSP 384
Cdd:PRK10263  563 PLasgvkKATLATGAAATVAAPVFSLANSGGPRpQVKEGIGP 604
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
117-347 1.68e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 50.26  E-value: 1.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 117 ALEAGVERRRMAAHKAATQPAPVKVreAAPRPASVKVPETATQPAPvkvreaAPQPAPVQEVREAAPQQASVQEEVREAA 196
Cdd:PRK12323 409 APAAAAAARAVAAAPARRSPAPEAL--AAARQASARGPGGAPAPAP------APAAAPAAAARPAAAGPRPVAAAAAAAP 480

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 197 TEQAPVQEVREAATEQAPVQEVSEAATEQAPVQevNEAATEQASVQAVREAATRPAPGKVRKAATQPAPvqvcqeatqlA 276
Cdd:PRK12323 481 ARAAPAAAPAPADDDPPPWEELPPEFASPAPAQ--PDAAPAGWVAESIPDPATADPDDAFETLAPAPAA----------A 548

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961912 277 PVKVREAATQPASgkvreaatqlAPVKVRKAATQLAPVKVHE----AATQPAPGKVSDAATQSASVQVREAATQL 347
Cdd:PRK12323 549 PAPRAAAATEPVV----------APRPPRASASGLPDMFDGDwpalAARLPVRGLAQQLARQSELAGVEGDTVRL 613
PHA03379 PHA03379
EBNA-3A; Provisional
 91-356 3.12e-06

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 49.67  E-value: 3.12e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  91 PPPFRRDVDRMLTDLAHycrmKLMEKALEAgVERRRMAAHKAATQPAPVkvreaaPRPASVKVPETATQPAPVKVreaaP 170
Cdd:PHA03379 379 PPIFLRRLHRLLLMRAG----KLTERAREA-LEKASEPTYGTPRPPVEK------PRPEVPQSLETATSHGSAQV----P 443

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 171 QPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATE----QAPVQEVNEAATEQASVQAvre 246
Cdd:PHA03379 444 EPPPVHDLEPGPLHDQHSMAPCPVAQLPPGPLQDLEPGDQLPGVVQDGRPACAPvpapAGPIVRPWEASLSQVPGVA--- 520

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 247 aatrPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPA--SGKVReaatqlapVKVRKAATQLAPVKVHEaatqPA 324
Cdd:PHA03379 521 ----FAPVMPQPMPVEPVPVPTVALERPVCPAPPLIAMQGPGetSGIVR--------VRERWRPAPWTPNPPRS----PS 584

                        250       260       270
                 ....*....|....*....|....*....|...
gi 568961912 325 PGKVSDA-ATQSASVQVREAATQLSPVEATDTS 356
Cdd:PHA03379 585 QMSVRDRlARLRAEAQPYQASVEVQPPQLTQVS 617
rne PRK10811
ribonuclease E; Reviewed
 167-375 3.57e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 49.65  E-value: 3.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  167 EAAPQPAPVQ-EVREAAPQQASVQEEVRE--AATEQAPVQEVREAatEQAPVQEVSEAATEQAPVQEVNEAATEQASVQA 243
Cdd:PRK10811  817 ERYPTQSPMPlTVACASPEMASGKVWIRYpvVRPQDVQVEEQREA--EEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEV 894

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  244 VREAATRPAPgkvrkAATQPAPVQVCQEATQLAPV----KVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEA 319
Cdd:PRK10811  895 VEEPVVVAEP-----QPEEVVVVETTHPEVIAAPVteqpQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVV 969

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568961912  320 ATQPAPGKVSDAATQSASVQVREAATQLSPVEATDTSQLAQVKADEAFAQHTSGEA 375
Cdd:PRK10811  970 VAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPA 1025
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 126-281 3.70e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.21  E-value: 3.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 126 RMAAHKAATQPAPVKVR-EAAPRPASVKVPETATQPAPVKVREAAPQPAPVQevreAAPQQASVQEEVREAATEQAPVQe 204
Cdd:PRK07764 361 RMLLPSASDDERGLLARlERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAP----AAAAPAAAAAPAPAAAPQPAPAP- 435

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961912 205 vrEAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVR 281
Cdd:PRK07764 436 --APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
127-363 4.05e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.10  E-value: 4.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 127 MAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVr 206
Cdd:PRK12323 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAP- 511

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 207 eAATEQAPVQEVSEAATEQAPVQEVNEAATeqasvqAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVRE---- 282
Cdd:PRK12323 512 -AQPDAAPAGWVAESIPDPATADPDDAFET------LAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDwpal 584

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 283 AATQPASGKVREAATQLAPVKVRKAATQLApVKVHEAATQPAPGKVSDAATQSASVQVReAATQLSPVEATDTSQLAQVK 362
Cdd:PRK12323 585 AARLPVRGLAQQLARQSELAGVEGDTVRLR-VPVPALAEAEVVERLQAALTEHFGQPVR-VVCEVGAVGATAAAVDAEER 662


                 .
gi 568961912 363 A 363
Cdd:PRK12323 663 A 663
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 126-286 4.51e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.94  E-value: 4.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 126 RMAAHK-AATQPAPVKVREAAPRPASVKVPetATQPAPVKVREAAPQPAPVQEVREAAPQQASVqEEVREAATEQAPVQE 204
Cdd:PRK14951 360 RLLAFKpAAAAEAAAPAEKKTPARPEAAAP--AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA-PPAPVAAPAAAAPAA 436

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 205 VREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVK--VRE 282
Cdd:PRK14951 437 APAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEAITalARE 516


                 ....
gi 568961912 283 AATQ 286
Cdd:PRK14951 517 LALQ 520
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 123-369 7.03e-06

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 48.41  E-value: 7.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 123 ERRRMAAHK-AATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAP 201
Cdd:PRK05035 466 KAAREARHKkAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADP 545

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 202 VQEVREAATEQAPVQevsEAATEQAPVQEVNEAATEQASVQAVREAAtrpapgKVRKAATQPAPVQVCQEATQLAPVKVR 281
Cdd:PRK05035 546 KKAAVAAAIARAKAK---KAAQQAANAEAEEEVDPKKAAVAAAIARA------KAKKAAQQAASAEPEEQVAEVDPKKAA 616

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 282 EAATqPASGKVREAATQLAPVKVRKAATQLAPVkvheaATQPAPGKVSDAATQSASVqvrEAATQLSPVEATDTSQLAQV 361
Cdd:PRK05035 617 VAAA-IARAKAKKAEQQANAEPEEPVDPRKAAV-----AAAIARAKARKAAQQQANA---EPEEAEDPKKAAVAAAIARA 687


                 ....*...
gi 568961912 362 KADEAFAQ 369
Cdd:PRK05035 688 KAKKAAQQ 695
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 143-353 9.12e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.79  E-value: 9.12e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 143 EAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQAsvqeevreAATEQAPVQEVREAATEQAPVQEVSEAA 222
Cdd:PRK14951 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASA--------PAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 223 TEQAPVQEVNEAATEQASVQAVREAATRPAPgKVRKAATQPAPVQVCQEATQLAPV---KVRE-AATQPASGKVREAATQ 298
Cdd:PRK14951 442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAV-ASAAPAPAAAPAAARLTPTEEGDVwhaTVQQlAAAEAITALARELALQ 520

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 568961912 299 LAPVKvRKAATQLAPVKVhEAATQPAPGKVSDAATQSASVQVREAATQLSPVEAT 353
Cdd:PRK14951 521 SELVA-RDGDQWLLRVER-ESLNQPGARERLRAALEAALGHAVRLEVEVGAVTDS 573
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 115-310 1.36e-05

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 47.64  E-value: 1.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 115 EKALEAGVERR------------RMAAHKAATQPAPVKVREAAPRPASVKVPETATQPApVKVREAAPQPAPVQEVREAA 182
Cdd:PRK05035 471 ARHKKAAEARAakdkdavaaalaRVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQ-ARARQAEKQAAAAADPKKAA 549

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 183 PQQASVQEEVREAATEQAPVQEVREAATEQAPVQ-EVSEAATEQAPVQEVNEAATEQASVQAVREA--ATRPAPGKVRKA 259
Cdd:PRK05035 550 VAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAaAIARAKAKKAAQQAASAEPEEQVAEVDPKKAavAAAIARAKAKKA 629

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568961912 260 ATQPAPVQVCQE-------ATQLAPVKVREAATQPASGKVREA--------ATQLAPVKVRKAATQ 310
Cdd:PRK05035 630 EQQANAEPEEPVdprkaavAAAIARAKARKAAQQQANAEPEEAedpkkaavAAAIARAKAKKAAQQ 695
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 125-250 2.86e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.52  E-value: 2.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 125 RRMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPV-QEVREAAPQQASVQEEVREAATEQAPVQ 203
Cdd:PRK07764 400 SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAgGAPSPPPAAAPSAQPAPAPAAAPEPTAA 479

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 568961912 204 EVREAATEQAPVQEVsEAATEQAPVQEVNEAATEQASVQAVREAATR 250
Cdd:PRK07764 480 PAPAPPAAPAPAAAP-AAPAAPAAPAGADDAATLRERWPEILAAVPK 525
rne PRK10811
ribonuclease E; Reviewed
 142-392 2.89e-05

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 46.57  E-value: 2.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  142 REAAPRPAS--VKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVS 219
Cdd:PRK10811  683 RNDEKRQAQqeAKALNVEEQSVQETEQEERVQQVQPRRKQRQLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRT 762

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  220 EAATEQAPVQEVNEAATEQASVQAVREAA-----TRPAPGKVR------------KAATQ-PAPVQVCQEATQLAPVKV- 280
Cdd:PRK10811  763 ELVKVPLPVVAQTAPEQDEENNAENRDNNgmprrSRRSPRHLRvsgqrrrryrdeRYPTQsPMPLTVACASPEMASGKVw 842

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  281 -REAATQPASGKVRE--------AATQLAPVKVRKAATQLAPVKVHEAATQPAPGKVSDAATQSASVQVREAATQLSPVE 351
Cdd:PRK10811  843 iRYPVVRPQDVQVEEqreaeevqVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAA 922

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 568961912  352 ATDTSQLAQVKADEAFAQHTSGEAHQVANGQSPIEVCETAT 392
Cdd:PRK10811  923 PVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAA 963
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 111-369 4.34e-05

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 46.01  E-value: 4.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  111 MKLMEKALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPETATQ-PAPVKVREAAPQPApvQEVREAAPQQASVQ 189
Cdd:PLN03237 1208 KKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEkEEEDEILDLKDRLA--AYNLDSAPAQSAKM 1285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  190 EEVREAATEQAPVQEVREAATEQAPVQEVSEAateqapvqevNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVC 269
Cdd:PLN03237 1286 EETVKAVPARRAAARKKPLASVSVISDSDDDD----------DDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKR 1355

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  270 QEATQLAPVKVREAATQPASG-------KVREAATQLAPVKVRKAATQLAPVKVHEAATQPAPGKVSDAATQSASVQVRE 342
Cdd:PLN03237 1356 GPATVQSGQKLLTEMLKPAEAigispekKVRKMRASPFNKKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRP 1435

                         250       260
                  ....*....|....*....|....*..
gi 568961912  343 AATQLSPVEATDTSQLAQVKADEAFAQ 369
Cdd:PLN03237 1436 QRANRKQTTYVLSDSESESADDSDFDD 1462
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
128-314 5.88e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 45.61  E-value: 5.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 128 AAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAP-QPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVr 206
Cdd:PRK07003 438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPaSDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA- 516

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 207 EAATEQAPVQEVSEAATEQAPV--QEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAA 284
Cdd:PRK07003 517 SREDAPAAAAPPAPEARPPTPAaaAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQV 596

                        170       180       190
                 ....*....|....*....|....*....|
gi 568961912 285 TQPASGKVREAATQLAPVKVRKAATQLAPV 314
Cdd:PRK07003 597 PTPRARAATGDAPPNGAARAEQAAESRGAP 626
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 157-379 8.58e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 8.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 157 ATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAAtEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAAT 236
Cdd:PRK07764 598 EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPA-EASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 237 EQASvqavreAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGkvreAATQLAPVKVRKAATQLAPvkv 316
Cdd:PRK07764 677 APAA------PPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQA----AQGASAPSPAADDPVPLPP--- 743

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961912 317 hEAATQPAPGKVSDAATQSASVQVREAATQLSPVEATDTSQLAQVKADEAFAQHTSGEAHQVA 379
Cdd:PRK07764 744 -EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVA 805
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 128-345 9.19e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 9.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 128 AAHKAATQPAPVKVR--EAAPRPASVKVPETATQPAPvkvREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEV 205
Cdd:PRK07764 593 GAAGGEGPPAPASSGppEEAARPAAPAAPAAPAAPAP---AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 206 REAATEQAPvqevseAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAP-VKVREAA 284
Cdd:PRK07764 670 PAKAGGAAP------AAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAAdDPVPLPP 743

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961912 285 TQPASGKVREAATQLAPVKVRKAATQLAPVKvhEAATQPAPGKVSDAATQSASVQVREAAT 345
Cdd:PRK07764 744 EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP--PPSPPSEEEEMAEDDAPSMDDEDRRDAE 802
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 159-351 9.19e-05

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 44.41  E-value: 9.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 159 QPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQ 238
Cdd:PRK09510  70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKA 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 239 ASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHE 318
Cdd:PRK09510 150 EAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK 229

                        170       180       190
                 ....*....|....*....|....*....|...
gi 568961912 319 AATQPApgKVSDAATQSASVQVREAATQLSPVE 351
Cdd:PRK09510 230 AAAEAK--AAAEKAAAAKAAEKAAAAKAAAEVD 260
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 111-263 1.06e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 44.51  E-value: 1.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 111 MKLME-KALEA-----GVERRR----MAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVRE 180
Cdd:PRK12678  26 MKLPElRALAKqlgikGTSGMRkgelIAAIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAA 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 181 AAPQQASVQEEVREAATEQAPVQEVREAAT----------EQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATR 250
Cdd:PRK12678 106 PAARAAAAAAAEAASAPEAAQARERRERGEaarrgaarkaGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEA 185

                        170
                 ....*....|...
gi 568961912 251 PAPGKVRKAATQP 263
Cdd:PRK12678 186 ERGERGRREERGR 198
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 104-251 1.07e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 44.42  E-value: 1.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 104 DLAHYCRMKLMEKALEAGVERRRMAAHKAATQPAPVKVReaaPRPASVKVPETA-TQPAPVKVREAAPQPAPVQEVREAA 182
Cdd:PRK14950 342 RTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVR---PTPAPSTRPKAAaAANIPPKEPVRETATPPPVPPRPVA 418

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961912 183 PQQASVQEEVREAATEQAPVQEVREaATEQAPVQEVSEAATEQAPVQEVNEAATEQ---------ASVQAVREAATRP 251
Cdd:PRK14950 419 PPVPHTPESAPKLTRAAIPVDEKPK-YTPPAPPKEEEKALIADGDVLEQLEAIWKQilrdvpprsPAVQALLSSGVRP 495
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 117-247 1.34e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 1.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 117 ALEAGVERRRMAAHKAATQPAPvkvreAAPRPASVKVPETATQPAPVkvREAAPQPAPVQEVREAAPQQASVQEEVREAA 196
Cdd:PRK07764 391 AGAPAAAAPSAAAAAPAAAPAP-----AAAAPAAAAAPAPAAAPQPA--PAPAPAPAPPSPAGNAPAGGAPSPPPAAAPS 463

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568961912 197 TEQAPVQEVREAATEQAPVQEVSEAATEQAPvQEVNEAATEQAS--VQAVREA 247
Cdd:PRK07764 464 AQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP-AAPAAPAAPAGAddAATLRER 515
PHA03247 PHA03247
large tegument protein UL36; Provisional
 131-353 2.12e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 2.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  131 KAATQPAPVKVREAAPRPASvkvPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAAT 210
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPP---PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR 2685

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  211 EQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVrEAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASG 290
Cdd:PHA03247 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSAT-PLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTA 2764

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961912  291 KVREAATQLAPVKVRKAATQLAPVKVHEAATQPAPGKvSDAATQSASVQVREAATQLSPVEAT 353
Cdd:PHA03247 2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSP-WDPADPPAAVLAPAAALPPAASPAG 2826
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
174-369 2.42e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 2.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 174 PVQEVREAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAP 253
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGP 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 254 GKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQLA-------------------PVKVRKAATQLAPV 314
Cdd:PRK12323 445 GGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPadddpppweelppefaspaPAQPDAAPAGWVAE 524

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 568961912 315 KVHEAATQPAPGKVSDAATQSASVQVREAATQLSPVEATDTSQLAQVKADEAFAQ 369
Cdd:PRK12323 525 SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
192-368 2.55e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.30  E-value: 2.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 192 VREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQvcqe 271
Cdd:PRK07003 353 LRMLAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPA---- 428

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 272 atQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAATQPAPGKVSDAATQSASVQVREAATQLSPVE 351
Cdd:PRK07003 429 --APAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAA 506

                        170
                 ....*....|....*..
gi 568961912 352 ATDTSQLAQVKADEAFA 368
Cdd:PRK07003 507 VPDARAPAAASREDAPA 523
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 201-369 4.14e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.55  E-value: 4.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 201 PVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKV 280
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 281 REAATQPASGKVREAATQLAPVKVRKAATQLAPVK---VHEAATQPAPGKVSDAATQSASVQvreaatqlsPVEATDTSQ 357
Cdd:PRK07994 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKkeaYRWKATNPVEVKKEPVATPKALKK---------ALEHEKTPE 511

                        170
                 ....*....|..
gi 568961912 358 LAQVKADEAFAQ 369
Cdd:PRK07994 512 LAAKLAAEAIER 523
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 117-384 4.55e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 4.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 117 ALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAA 196
Cdd:PRK07764 416 APAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPA 495

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 197 TEQAPVQ---------------EVREAATEQapVQEVSEAATEQAPVQEV------------------NEAATEQASVQA 243
Cdd:PRK07764 496 APAAPAApagaddaatlrerwpEILAAVPKR--SRKTWAILLPEATVLGVrgdtlvlgfstgglarrfASPGNAEVLVTA 573

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 244 VRE-------AATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKV 316
Cdd:PRK07764 574 LAEelggdwqVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHH 653

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961912 317 HEAATQPAPGkvsdAATQSASVQVREAATQLSPVEATDTSQLAQVKADEAFAQHTSGEAHQVANGQSP 384
Cdd:PRK07764 654 PKHVAVPDAS----DGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDP 717
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 179-368 4.59e-04

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 42.63  E-value: 4.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 179 REAAPQQASVQE-EVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATR---PAPG 254
Cdd:PRK05035 464 REKAAREARHKKaAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEkqaAAAA 543

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 255 KVRKAATQPApvqvcqeatqLAPVKVREAATQPASGKVREA--------ATQLAPVKVRKAATQLAPVKVHEAATQPAPG 326
Cdd:PRK05035 544 DPKKAAVAAA----------IARAKAKKAAQQAANAEAEEEvdpkkaavAAAIARAKAKKAAQQAASAEPEEQVAEVDPK 613

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 568961912 327 KVSDAATQSASVQVREAATQLSPVEATDTSQLAQVKADEAFA 368
Cdd:PRK05035 614 KAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARA 655
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 123-302 9.04e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.99  E-value: 9.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  123 ERRRMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPV 202
Cdd:PRK10263  404 QQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQP 483

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  203 QEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQ-----ASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAP 277
Cdd:PRK10263  484 VEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREreqlaAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP 563

                         170       180
                  ....*....|....*....|....*
gi 568961912  278 VkvrEAATQPASGKVREAATQLAPV 302
Cdd:PRK10263  564 L---ASGVKKATLATGAAATVAAPV 585
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
116-186 9.95e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 41.52  E-value: 9.95e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961912 116 KALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPeTATQPAPVKVREAAPQPAPVQEVREAAPQQA 186
Cdd:COG5373   31 EELEAELAEAAEAASAPAEPEPEAAAAATAAAPEAAPAP-VPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 123-214 1.12e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.61  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  123 ERRRMAAHkaaTQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPV 202
Cdd:PRK10263  519 EREQLAAW---YQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPR 595

                          90
                  ....*....|..
gi 568961912  203 QEVREAATEQAP 214
Cdd:PRK10263  596 PQVKEGIGPQLP 607
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 136-266 1.17e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 41.33  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 136 PAPVKVREAAPRPASVKVPETATQPAPVKVReaaPQPAPVQEVREAAPQQASVQEEVREAATEqaPVQEVREAATEQAPV 215
Cdd:PRK14950 350 PLELAVIEALLVPVPAPQPAKPTAAAPSPVR---PTPAPSTRPKAAAAANIPPKEPVRETATP--PPVPPRPVAPPVPHT 424

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 568961912 216 QEVSEAATeqapvqevneaaTEQASVQAVREAATRPAPGKVRKAATQPAPV 266
Cdd:PRK14950 425 PESAPKLT------------RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
PHA03247 PHA03247
large tegument protein UL36; Provisional
 133-325 1.53e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  133 ATQPAPVKVREAAPRPAsvkVPETATQPAPVKVREAAPqPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAA--- 209
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHAL---VSATPLPPGPAAARQASP-ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPpaa 2774

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  210 -TEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPA 288
Cdd:PHA03247 2775 pAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 568961912  289 S----GKVREAATQLAPVKVRKAATQLAPVKVHEAATQPAP 325
Cdd:PHA03247 2855 SvapgGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRST 2895
PHA03369 PHA03369
capsid maturational protease; Provisional
 123-357 1.55e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 40.75  E-value: 1.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 123 ERRRMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREA--APQQASVQEEVREAATEQA 200
Cdd:PHA03369 341 LKAHNEILKTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPmtAYPPVPQFCGDPGLVSPYN 420

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 201 PVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQAsvQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKV 280
Cdd:PHA03369 421 PQSPGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHP--QEHGHERKRKRGGELKEELIETLKLVKKLKEEQESLAKE 498

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961912 281 REAATQpASGKVREAATQLAPVKVRKAATqlAPVKVHEAATQPAPGKVSDAATQSASVQVREAATQLSPVEATDTSQ 357
Cdd:PHA03369 499 LEATAH-KSEIKKIAESEFKNAGAKTAAA--NIEPNCSADAAAPATKRARPETKTELEAVVRFPYQIRNMESPAFVH 572
PRK10905 PRK10905
cell division protein DamX; Validated
 144-332 1.68e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 40.31  E-value: 1.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 144 AAPRPASVKVPETATQ-PAPVKVREAAPQPAPVQEVREAAPQQ-ASVQEEVREAATEQAPVQEVREAATEqapvqevSEA 221
Cdd:PRK10905  51 VQPAPGTTSAEQTAGNtQQDVSLPPISSTPTQGQTPVATDGQQrVEVQGDLNNALTQPQNQQQLNNVAVN-------STL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 222 ATEQAPVQEV-NEAATEQASVQAV--REAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQ 298
Cdd:PRK10905 124 PTEPATVAPVrNGNASRQTAKTQTaeRPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATST 203

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 568961912 299 LAPvkvrKAATQLAPV-KVHEAATQPAPGKVSDAA 332
Cdd:PRK10905 204 PAP----KETATTAPVqTASPAQTTATPAAGGKTA 234
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 128-298 1.83e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 1.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 128 AAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAP---QPAPVQEVREAAPQQASVQEEVREAATEQAPVQE 204
Cdd:PRK07764 636 PAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPaapPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQAD 715

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 205 VREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEatqlaPVKVREAA 284
Cdd:PRK07764 716 DPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE-----EEMAEDDA 790

                        170
                 ....*....|....
gi 568961912 285 TQPASGKVREAATQ 298
Cdd:PRK07764 791 PSMDDEDRRDAEEV 804
PHA03247 PHA03247
large tegument protein UL36; Provisional
 117-346 1.85e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  117 ALEAGVERR-RMAAHKAATQPAPVKVREAAPrPASVKVPETATQPAPVKVREAAPQPAPVQEVreAAPQQASVQEEVREA 195
Cdd:PHA03247 2749 ATPGGPARPaRPPTTAGPPAPAPPAAPAAGP-PRRLTRPAVASLSESRESLPSPWDPADPPAA--VLAPAAALPPAASPA 2825

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  196 ATEQAPVQEVREA-ATEQAPVQEVSEAATEQAPVQEVNEAATEQASVqAVREAATRPAPGKVRKAATQPAPVQVCQEATQ 274
Cdd:PHA03247 2826 GPLPPPTSAQPTApPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPA-AKPAAPARPPVRRLARPAVSRSTESFALPPDQ 2904

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961912  275 LAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAATQPAPGKVSDAATQSASVQVREAATQ 346
Cdd:PHA03247 2905 PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPR 2976
PHA03247 PHA03247
large tegument protein UL36; Provisional
 126-354 1.93e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  126 RMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPvkvreAAPQPAPVQEvreAAPQQASVQE--EVREAATEQAPVQ 203
Cdd:PHA03247 2802 WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA-----PPPPPGPPPP---SLPLGGSVAPggDVRRRPPSRSPAA 2873

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  204 EVreAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREA 283
Cdd:PHA03247 2874 KP--AAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG 2951

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961912  284 ATQPASGKVREAATQLAPVKVRKAATQLAPvkvhEAATQPAPGKVSDAATQSASVQVREAATQLSPVEATD 354
Cdd:PHA03247 2952 AGEPSGAVPQPWLGALVPGRVAVPRFRVPQ----PAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETD 3018
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
100-255 2.07e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.53  E-value: 2.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 100 RMLTDLAHYCRMKLMEKALEA-GVERRRMAAHKAATQPA----PVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAP 174
Cdd:PRK14971 349 RLLVELTLIQLAQLTQKGDDAsGGRGPKQHIKPVFTQPAaapqPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 175 VQEVR--EAAPQQASVQEEVREAATEQAPVQEVREAATE---QAPVQEVSEAAT---EQAPVQEVNEAATEQASVQAVRE 246
Cdd:PRK14971 429 VDPPAavPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGpstLRPIQEKAEQATgniKEAPTGTQKEIFTEEDLQYYWQE 508

                        170
                 ....*....|
gi 568961912 247 -AATRPAPGK 255
Cdd:PRK14971 509 fAGTRPQEEK 518
PRK10905 PRK10905
cell division protein DamX; Validated
 169-335 2.66e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 39.54  E-value: 2.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 169 APQPAPVQEvrEAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEV----SEAATEQAPVQEVNEAA------TEQ 238
Cdd:PRK10905  50 GVQPAPGTT--SAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQQRVEVqgdlNNALTQPQNQQQLNNVAvnstlpTEP 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 239 ASVQAVREAATRPAPG----KVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAP- 313
Cdd:PRK10905 128 ATVAPVRNGNASRQTAktqtAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPk 207

                        170       180
                 ....*....|....*....|...
gi 568961912 314 -VKVHEAATQPAPGKVSDAATQS 335
Cdd:PRK10905 208 eTATTAPVQTASPAQTTATPAAG 230
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 116-248 2.75e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 2.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 116 KALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPETATQP---APVKVREAAPQPAPVQEVREAAPQQASVQEEV 192
Cdd:PRK14951 385 EAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPaaaAPAAAPAAAPAAVALAPAPPAQAAPETVAIPV 464

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 568961912 193 ReaaTEQAPVQEVREAATEQAPVQEVSEAATE-QAPVQEVNEAATEQASVQAVREAA 248
Cdd:PRK14951 465 R---VAPEPAVASAAPAPAAAPAAARLTPTEEgDVWHATVQQLAAAEAITALARELA 518
rne PRK10811
ribonuclease E; Reviewed
 139-395 3.20e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 40.02  E-value: 3.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  139 VKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVR------------ 206
Cdd:PRK10811  729 VRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPEQDEENNAENRDNNGMPRRsrrsprhlrvsg 808

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  207 --------EAATEQAPVQ-EVSEAATEQA--------PVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVC 269
Cdd:PRK10811  809 qrrrryrdERYPTQSPMPlTVACASPEMAsgkvwiryPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV 888

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  270 QEATQLAPVKVREAATQPASGKVREAAtqlapvkvrkaatqlAPVKVHEAATQPAPgkvsdAATQSASVQVREAATQLSP 349
Cdd:PRK10811  889 EAVAEVVEEPVVVAEPQPEEVVVVETT---------------HPEVIAAPVTEQPQ-----VITESDVAVAQEVAEHAEP 948

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 568961912  350 VEATDTSQLAQVKADEAFAQHTSGEAHQVANGQSPIEVCETATGQH 395
Cdd:PRK10811  949 VVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV 994
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 115-314 5.18e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.31  E-value: 5.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 115 EKALEAGVERRRMAAHKAATQPAPvkvREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVRE 194
Cdd:PRK14951 377 EKKTPARPEAAAPAAAPVAQAAAA---PAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 195 AATEQAPVQEVREAATEQAPVQEV-SEAATEQAPVQEVNEAATEQASVQAVreAATRPAPGKVRKAATQPAPVQvcQEAT 273
Cdd:PRK14951 454 QAAPETVAIPVRVAPEPAVASAAPaPAAAPAAARLTPTEEGDVWHATVQQL--AAAEAITALARELALQSELVA--RDGD 529

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 568961912 274 QLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPV 314
Cdd:PRK14951 530 QWLLRVERESLNQPGARERLRAALEAALGHAVRLEVEVGAV 570
PRK13850 PRK13850
type IV secretion system protein VirD4; Provisional
 88-229 5.64e-03

type IV secretion system protein VirD4; Provisional


Pssm-ID: 237531 [Multi-domain]  Cd Length: 670  Bit Score: 39.08  E-value: 5.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  88 IFGPPPFRRDVDRMLTDLAhYCRM------KLMEKA---LEAGVERRR---MAAHKAATQPAPVKVREAAP--RPASVKV 153
Cdd:PRK13850 517 IKGQPPLKLRKVRYYSDRE-LKRIfeaqtgSLPEPAslmLPDDTNARRkhlPQPAASSTDQAPAKIALIPDpdEPASPQN 595

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961912 154 PETATQPAPVKVR-EAAPQPAPVQEVREaapqqasvQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQ 229
Cdd:PRK13850 596 RTVADVPKPLSKGmDAPARAKEVDDARE--------YDGADDVTPEALVVPELAPALTAQRQLLDQIIALQQRSRVA 664
flhF PRK06995
flagellar biosynthesis protein FlhF;
117-231 6.80e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 38.79  E-value: 6.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 117 ALEAGVERRRMAAHKAATQPAPVKVREAAPRPAS----VKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEV 192
Cdd:PRK06995  50 ALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPapwlVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAA 129

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 568961912 193 REAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEV 231
Cdd:PRK06995 130 RRLARAAAAAPRPRVPADAAAAVADAVKARIERIVNDTV 168
PHA03247 PHA03247
large tegument protein UL36; Provisional
 124-265 6.81e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 6.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912  124 RRRMAAHKAATQPApvkvreAAPRPASVKVPETATQPAPVKVreAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQ 203
Cdd:PHA03247 2863 RRRPPSRSPAAKPA------APARPPVRRLARPAVSRSTESF--ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP 2934

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961912  204 EVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAP 265
Cdd:PHA03247 2935 PPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPL 2996
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 115-262 7.64e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.81  E-value: 7.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 115 EKALEAGVERRRMAAHKAATQPAPVKVREAAP-------RPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQAS 187
Cdd:PRK07764 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPaapppapAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQ 726

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961912 188 VQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVN---EAATEQASVQAVREAATRPAPGKVRKAATQ 262
Cdd:PRK07764 727 GASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAaapPPSPPSEEEEMAEDDAPSMDDEDRRDAEEV 804
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 193-384 8.55e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.43  E-value: 8.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 193 REAATEQAPVQEVrEAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEA 272
Cdd:PRK07764 366 SASDDERGLLARL-ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 273 TQLAPVKVREAATQPASGKVREAATQLAPVkvrKAATQLAPVKVHEAATQPAPGKVSDAATQSASV----------QVRE 342
Cdd:PRK07764 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAP---EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADdaatlrerwpEILA 521

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 568961912 343 AATQLSPVEA---TDTSQLAQVKADEA-FAQHTSGEAHQVANGQSP 384
Cdd:PRK07764 522 AVPKRSRKTWailLPEATVLGVRGDTLvLGFSTGGLARRFASPGNA 567
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 145-330 9.77e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 37.86  E-value: 9.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 145 APRPASVKVPETATQPAPVKVREAAPQP--APVQEVREAAPQQASVQEEVRE-AATEQAPVQEVREAATEQAPVQEVSEA 221
Cdd:PRK09510  74 AKRAEEQRKKKEQQQAEELQQKQAAEQErlKQLEKERLAAQEQKKQAEEAAKqAALKQKQAEEAAAKAAAAAKAKAEAEA 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961912 222 ATEQAPVQEVNEAATEQASVQAVREAATRpAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQLAP 301
Cdd:PRK09510 154 KRAAAAAKKAAAEAKKKAEAEAAKKAAAE-AKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAA 232

                        170       180
                 ....*....|....*....|....*....
gi 568961912 302 VKVRKAATQLAPVKVHEAATQPAPGKVSD 330
Cdd:PRK09510 233 EAKAAAEKAAAAKAAEKAAAAKAAAEVDD 261
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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