|
Name |
Accession |
Description |
Interval |
E-value |
| CEP209_CC5 |
pfam16574 |
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry ... |
1314-1441 |
5.64e-36 |
|
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry a number of coiled-coil regions, and this is the fifth along the length of the protein. It is thought that the proteins are involved in cilia biosynthesis.
Pssm-ID: 465184 [Multi-domain] Cd Length: 128 Bit Score: 133.66 E-value: 5.64e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1314 TMIQLQNDKLKIMQEMKNSQQEHRNMENKTLELELKLKGLEELISTLKDARGAQKVINWHVKIEELRLQELKLNRELVKG 1393
Cdd:pfam16574 1 TMIQLQEDKAKLQEELKHAEEERRRAEDRAQELELKLKGLEELISTLKDGKGAQKVTEWHKKMEEIRLQELKLQRELSKQ 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 568967308 1394 KEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELER 1441
Cdd:pfam16574 81 KEEIKYLENLIREQERTISSLEEEIVQQTKLHEERQLAWDQREVELER 128
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1107-1882 |
2.57e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 2.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1107 HLRTSLKQMEERNFELETKFTELTKINLDAQKVEQMLRDELADSVTKavsdadRQRILELEKSEVELKVEVSKLREISDI 1186
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL------RLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1187 AKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKALIAKlhqhvvSLQISEATALGKLESVTSKLQKMEAYNLRLEQK 1266
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA------ELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1267 LDEKEQALYYARlegrNRAKHLRQTIQSLRrqfsgalplAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEL 1346
Cdd:TIGR02168 374 LEELEEQLETLR----SKVAQLELQIASLN---------NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1347 ELKLKGLEELISTLKDARGAQKVINWHVKIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHE 1426
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1427 ERQMAWDQREV----ELERQLDIFDHQQNEILSAAQKFEDSTGSMPDPSLPLPNQLE---IALRKIKENIQVILKTQATC 1499
Cdd:TIGR02168 521 ILGVLSELISVdegyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPldsIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1500 KSLEEKLKEKESALRLAEQNILSRDKVINELR--LRLPATADREKLIAELERKELEPKSHHTMKiAHQTIANMQARLNHK 1577
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDnaLELAKKLRPGYRIVTLDGDLVRPGGVITGG-SAKTNSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1578 EEVLKKYQHLLEKAREEQREIVkkheedlhvlhhKLEQQADNSLNKFRQTAQDLLKQSPAPVPTNKHFIRLAEMEQTVAE 1657
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALA------------ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1658 QDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQEthasEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQK 1737
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA----QIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1738 E--ANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMtAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQ 1815
Cdd:TIGR02168 824 ErlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI-EELESELEALLNERASLEEALALLRSELEELSEE 902
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568967308 1816 IEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNK--------ILREKDGIDQENDELRRQIKRL 1882
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeysltleeAEALENKIEDDEEEARRRLKRL 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1648-2365 |
8.54e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 8.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1648 LAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITEL--------------KVREFENTKLRLQ---ETHASEVKKVKA 1710
Cdd:TIGR02168 188 LDRLEDILNELERQLKSLERQAEKAERYKELKAELRELelallvlrleelreELEELQEELKEAEeelEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1711 EVEDLRHALAQAHKDSQSLKSELQAQKEANSRaptttMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIA 1790
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISR-----LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1791 VTSQKEANLNVQQVVERHTrELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQ 1870
Cdd:TIGR02168 343 EEKLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1871 ENDELRRQIKRLSSGLQSKTLiDNKQSLIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEEL----IRWEEGKKWQTK 1946
Cdd:TIGR02168 422 EIEELLKKLEEAELKELQAEL-EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlqARLDSLERLQEN 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1947 VEGLRNRLKEKEGEAHGLAKQLNTLKELF----------------------------AKADKEKLTLQKKLKTTGMTVDQ 1998
Cdd:TIGR02168 501 LEGFSEGVKALLKNQSGLSGILGVLSELIsvdegyeaaieaalggrlqavvvenlnaAKKAIAFLKQNELGRVTFLPLDS 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1999 VLGVRALESEKELEELKKKNLDLENDILYMRT------QQALPRDSVVEDL----HLQNKY-LQEKLHTLEKKL------ 2061
Cdd:TIGR02168 581 IKGTEIQGNDREILKNIEGFLGVAKDLVKFDPklrkalSYLLGGVLVVDDLdnalELAKKLrPGYRIVTLDGDLvrpggv 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2062 ----SKEKYSQSLTSEIESDDHCQK-------EQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKK 2130
Cdd:TIGR02168 661 itggSAKTNSSILERRREIEELEEKieeleekIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2131 GKLELERKLGQ-----VRGAGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKAsgiltSEKMATIEEENRNLKAELEKL 2205
Cdd:TIGR02168 741 EVEQLEERIAQlskelTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL-----KEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2206 KAHFGRQLSMQFESKNKGTEKIVaENERLRKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEG 2285
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATER-RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2286 ADSKSWKSIvvsRVYETKMKELESDIAKKNQSITDLKQLVREAT-EREQKAKKYTEDLEQQIEILKNVPEGAETEQELIR 2364
Cdd:TIGR02168 895 ELEELSEEL---RELESKRSELRRELEELREKLAQLELRLEGLEvRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
.
gi 568967308 2365 E 2365
Cdd:TIGR02168 972 R 972
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-781 |
8.61e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 8.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 93 KLENELEMAQQSAGGRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQD 172
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 173 IIDYQKQIDSQKESLlsrrgedSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNR 252
Cdd:TIGR02168 297 ISRLEQQKQILRERL-------ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 253 MKALVHQSDAVMDQIKKENEHYRLQVRELtdllkakdeeddpvmmavNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLK 332
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASL------------------NNEIERLEARLERLEDRRERLQQEIEELLKKLE 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 333 NAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKG--TSNFYQQTHYMKIHSKVQIL 410
Cdd:TIGR02168 432 EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQArlDSLERLQENLEGFSEGVKAL 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 411 EEKTKEAE----RIAELAEADAR------------------EKDKELVEALKRLKDYESG------VYGLEDAVIEIKNC 462
Cdd:TIGR02168 512 LKNQSGLSgilgVLSELISVDEGyeaaieaalggrlqavvvENLNAAKKAIAFLKQNELGrvtflpLDSIKGTEIQGNDR 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 463 KAQIKIRD--GEMEVLTKEINKLEMKINDIL-------DENEALRERAGLEPKTMI-----DL----------TEFRNSK 518
Cdd:TIGR02168 592 EILKNIEGflGVAKDLVKFDPKLRKALSYLLggvlvvdDLDNALELAKKLRPGYRIvtldgDLvrpggvitggSAKTNSS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 519 RLKQQQYRAENQVLLKEIES----LEEERLDLKRKIRQMAQE-RGKRNAASGLTIDDLNLSETFSHENKIEGRKLNFMSL 593
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEkiaeLEKALAELRKELEELEEElEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 594 NNMNETQSKNETIVQDLPIQEEQSRNAELELDHQRSQAEQNEF------LSRELAEKEKDLERSRTVIAKFQSKLKELVE 667
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkeelkaLREALDELRAELTLLNEEAANLRERLESLER 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 668 ENKQLEEGMKEILQAIKDMpkdsdvkggetSLIIPSLERLVNAMESKNAEgifdaslhLKAQVDQLTGRNEELRQELRQS 747
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEEL-----------SEDIESLAAEIEELEELIEE--------LESELEALLNERASLEEALALL 892
|
730 740 750
....*....|....*....|....*....|....
gi 568967308 748 RKEAVNYSQQLVKANLKIDHLEKETDLLRQSAGS 781
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
327-1209 |
1.75e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 1.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 327 LRGKLKNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQTHYmKIHSK 406
Cdd:TIGR02168 218 LKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY-ALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 407 VQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKirdGEMEVLTKEINKLEMK 486
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE---AELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 487 INDILDENEALRERaglepktmidltefRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASgl 566
Cdd:TIGR02168 374 LEELEEQLETLRSK--------------VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE-- 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 567 tiddlnLSETFSHENKIEgrklnfmslnnmNETQSKNETIVQDLPIQEEQSRNAELELDHQRSQAEQneflsreLAEKEK 646
Cdd:TIGR02168 438 ------LQAELEELEEEL------------EELQEELERLEEALEELREELEEAEQALDAAERELAQ-------LQARLD 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 647 DLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKdmpkdsdVKGGETSLIIPSLERLVNAMESKNAEGIFDASLHL 726
Cdd:TIGR02168 493 SLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS-------VDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 727 KaqvDQLTGRNEELrqELRQSRKEAVNYSQQLVKANLKidhleketdlLRQSAGSNVVYKGIDLPDGIAPSSAYIINSQN 806
Cdd:TIGR02168 566 K---QNELGRVTFL--PLDSIKGTEIQGNDREILKNIE----------GFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 807 eylihlLQELDNKEKKLKHLED--SLEDYnrkfaVIRHQQSLLYKEYLSEKDIWKTDSEM--IREEKRKLEDQAEQDAVK 882
Cdd:TIGR02168 631 ------LDNALELAKKLRPGYRivTLDGD-----LVRPGGVITGGSAKTNSSILERRREIeeLEEKIEELEEKIAELEKA 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 883 VKEYNNLLSALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEMERHLRKEngkhRNDVIAMEAEVTEKLGSLQR 962
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE----LTELEAEIEELEERLEEAEE 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 963 FKEMAIFKIAALQKVIDN-----SVSLSELELANKQYNELTTKYRDILQKDNMLVQRTS----NLEHLECENASLKEQME 1033
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQlkeelKALREALDELRAELTLLNEEAANLRERLESLERRIAaterRLEDLEEQIEELSEDIE 855
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1034 AISKELEITKEKLHTIEQAWEQETKLGNDSN--MDKAKKSMTNSdivsiSKKITVLEMKELNERQRAEHCQKMYEHLRTS 1111
Cdd:TIGR02168 856 SLAAEIEELEELIEELESELEALLNERASLEeaLALLRSELEEL-----SEELRELESKRSELRRELEELREKLAQLELR 930
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1112 LKQMEERNFELETKFTELTKINLDAQKVEQMLRDELADSVtkavsdadRQRILELEKSEVEL-KVEVSKLREISDIAKRQ 1190
Cdd:TIGR02168 931 LEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA--------RRRLKRLENKIKELgPVNLAAIEEYEELKERY 1002
|
890
....*....|....*....
gi 568967308 1191 vDFLNSQQQSREKEVESLR 1209
Cdd:TIGR02168 1003 -DFLTAQKEDLTEAKETLE 1020
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
28-683 |
2.43e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 2.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 28 LLISLSKVEVNELK------NEDQENMIHLFRITQSLMKMK----AQEVELALEEVEKAGEEQAKFeNQLKTKVMKLENE 97
Cdd:TIGR02168 225 LELALLVLRLEELReeleelQEELKEAEEELEELTAELQELeeklEELRLEVSELEEEIEELQKEL-YALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 98 LEMAQQSAGGRDTRFLR--DEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIID 175
Cdd:TIGR02168 304 KQILRERLANLERQLEEleAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 176 YQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMR-----KNLEESVQEMEKMTDEY 250
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEleeleEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 251 NRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKV----------------EEWKL------ 308
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgilgvlselisvdEGYEAaieaal 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 309 ------ILSSKDDEIIEYQQML-QSLRGK-----LKNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEME---K 373
Cdd:TIGR02168 544 ggrlqaVVVENLNAAKKAIAFLkQNELGRvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllG 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 374 NTFIIEDLKNEL----QKDKGTSNFYQQTHYM-----------KIHSKVQILEEKTKEAERIAELAEADAREKDKELVEA 438
Cdd:TIGR02168 624 GVLVVDDLDNALelakKLRPGYRIVTLDGDLVrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 439 LKRLKDYESGVYGL----EDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDLTEF 514
Cdd:TIGR02168 704 RKELEELEEELEQLrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 515 RNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASGLTIDDLNLSetfshENKIEGRKLNFMSLN 594
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL-----EEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 595 -NMNETQSKNETIVQDLPIQEEQSRNAELELDHQRSQAEQnefLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLE 673
Cdd:TIGR02168 859 aEIEELEELIEELESELEALLNERASLEEALALLRSELEE---LSEELRELESKRSELRRELEELREKLAQLELRLEGLE 935
|
730
....*....|
gi 568967308 674 EGMKEILQAI 683
Cdd:TIGR02168 936 VRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1670-2025 |
5.42e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 5.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1670 KKVSKDLEKQKEITELKvREFENTKLRLQETHAsEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEansraptttmr 1749
Cdd:TIGR02168 667 KTNSSILERRREIEELE-EKIEELEEKIAELEK-ALAELRKELEELEEELEQLRKELEELSRQISALRK----------- 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1750 nLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAvtsqkeanlnvqqvvERHTRELKSQIEDLNENLLKLKEA 1829
Cdd:TIGR02168 734 -DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA---------------EEELAEAEAEIEELEAQIEQLKEE 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1830 LKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLidnkqsLIDELQKKVKKL 1909
Cdd:TIGR02168 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA------EIEELEELIEEL 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1910 ESQLERKVDDVDIKPVKEKSSKEELIrweegkKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKL 1989
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELE------ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
330 340 350
....*....|....*....|....*....|....*.
gi 568967308 1990 KTTGMTVDQVLGVRALESEKELEELKKKNLDLENDI 2025
Cdd:TIGR02168 946 SEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1658-1939 |
5.33e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 5.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1658 QDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQK 1737
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1738 EANSRAptttmrnlvDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAvtsqKEANLNVQQVVERHTRELKSQIE 1817
Cdd:COG1196 313 ELEERL---------EELEEELAELEEELEELEEELEELEEELEEAEEELEEA----EAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1818 DLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQS 1897
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568967308 1898 LIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRWEE 1939
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1582-2453 |
6.69e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 6.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1582 KKYQHLLEKAREEQREIVKKHEEDLHVLHHKLEQQAdNSLNKFRQTAQDLLKQSPAPVPTNKHFIRlaEMEQTVAEQDDS 1661
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLRLEELREELEELQEEL-KEAEEELEELTAELQELEEKLEELRLEVS--ELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1662 LSSLLTKLKkvskDLEKQKEITELKVREFENTKLRLQEthasEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANS 1741
Cdd:TIGR02168 290 LYALANEIS----RLEQQKQILRERLANLERQLEELEA----QLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1742 RAptttmRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQvverhtreLKSQIEDLNE 1821
Cdd:TIGR02168 362 EL-----EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER--------LQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1822 NLLKLKeaLKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDE 1901
Cdd:TIGR02168 429 KLEEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1902 LQKKVKKLESQLERKVDDVdikpvkeksskEELIRWEEGkkWQTKVE-GLRNRL-------KEKEGEAHGLAKQLNTLKE 1973
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVL-----------SELISVDEG--YEAAIEaALGGRLqavvvenLNAAKKAIAFLKQNELGRV 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1974 LFAKADKEKLT-LQKKLKTTGMTVDQVLGVralesekeLEELKKKNLDLENDILYMrTQQALPRDSVVEDLHLQNKY-LQ 2051
Cdd:TIGR02168 574 TFLPLDSIKGTeIQGNDREILKNIEGFLGV--------AKDLVKFDPKLRKALSYL-LGGVLVVDDLDNALELAKKLrPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2052 EKLHTLEKKLSKEKYSQSLTSEIESddhcQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKG 2131
Cdd:TIGR02168 645 YRIVTLDGDLVRPGGVITGGSAKTN----SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2132 KLELERKLGQVR-GAGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKmATIEEENRNLKAELEKLKahfg 2210
Cdd:TIGR02168 721 LEELSRQISALRkDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL-AEAEAEIEELEAQIEQLK---- 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2211 rqlsmqfESKNKGTEKIVAENERLRKelkkeieasekLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKs 2290
Cdd:TIGR02168 796 -------EELKALREALDELRAELTL-----------LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES- 856
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2291 wksivvsrvYETKMKELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEilknvpEGAETEQELIRELQLLR 2370
Cdd:TIGR02168 857 ---------LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR------ELESKRSELRRELEELR 921
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2371 LANNQMDKERAELIHQIEINKDQTRADSSIPdsdqlkekINDLETQLRKLELEKQHSKEEVKKLKKELENFDPSFFEEIE 2450
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEEYSLT--------LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIE 993
|
...
gi 568967308 2451 DLK 2453
Cdd:TIGR02168 994 EYE 996
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
113-686 |
8.13e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 8.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 113 LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRG 192
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 193 EDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENE 272
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 273 HYRLQVRELTDLLKAKDEEddpvmmavnakVEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDAdKSNIMALKQGIQE 352
Cdd:COG1196 404 ELEEAEEALLERLERLEEE-----------LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE-EALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 353 RDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQTHYMKIHSKVQILEEKTKEAERIAELAEADA---- 428
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlqni 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 429 -REKDKELVEALKRLKDYESG-------------------------VYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINK 482
Cdd:COG1196 552 vVEDDEVAAAAIEYLKAAKAGratflpldkiraraalaaalargaiGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 483 LEMKINDILDENEALRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNA 562
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 563 ASGLTIDDLNLSEtfshenkiegrklnfmslnnmNETQSKNETIVQDLPIQEEQSRNAELELDHQRSQAEQNEFLSRELA 642
Cdd:COG1196 712 AEEERLEEELEEE---------------------ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 568967308 643 EKEKDLERSRTV----IAKFQS---KLKELVEENKQLEEGMKEILQAIKDM 686
Cdd:COG1196 771 RLEREIEALGPVnllaIEEYEEleeRYDFLSEQREDLEEARETLEEAIEEI 821
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
114-493 |
1.41e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 114 RDEIRQLEKQLEQKDRELEDMEKELdkekkvneqlalrnEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRGE 193
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKAL--------------AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 194 DSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEynrMKALVHQSDAVMDQIKKENEH 273
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE---LKALREALDELRAELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 274 YRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEwKLILSSKDDEIIEYQQMLQSLRGKLKNA--QLDADKSNIMALKQGIQ 351
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEEL-SEDIESLAAEIEELEELIEELESELEALlnERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 352 ERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQthymKIHSKVQILEEKTKEAERIAELAEADAREK 431
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE----RLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568967308 432 DKELVEALKRLkdyesGVYGLeDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDE 493
Cdd:TIGR02168 974 LKRLENKIKEL-----GPVNL-AAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE 1029
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
114-452 |
2.53e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 2.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 114 RDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQL----ALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLS 189
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAeryqALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 190 RRGEDSDYRSQLSKKNYELVQYLDEIQTLTEAN--------EKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSD 261
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEqlrvkekiGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 262 AVMDQIKKENEHYRLQVRELTDLLKA-KDEEDDPV--MMAVNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDA 338
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAElKEELEDLRaeLEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 339 DK--SNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKdkgtsnfYQQTHYmKIHSKVQILEEKTKE 416
Cdd:TIGR02169 416 QRlsEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK-------YEQELY-DLKEEYDRVEKELSK 487
|
330 340 350
....*....|....*....|....*....|....*....
gi 568967308 417 AERIAELAEADAR---EKDKELVEALKRLKDYESGVYGL 452
Cdd:TIGR02169 488 LQRELAEAEAQARaseERVRGGRAVEEVLKASIQGVHGT 526
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
518-1300 |
2.98e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 2.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 518 KRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASGLTIDDLNLSETFSHENKIEGRKLNfMSLNNMN 597
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ-KELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 598 ETQSKNETIVQDLPIQEEQSRNAELELDHQRSQAEQ-NEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGM 676
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESkLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 677 KEILQAIKDMPKDSDVKGGETSLIIPSLERLvnamesknaegifdaslhlKAQVDQLTGRNEELRQELRQSRKEAVNYSQ 756
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERL-------------------EARLERLEDRRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 757 QLVKANLKIDHLEKETDLLRQSAGsnvvykgidlpdgiapssayiinsqNEYLIHLLQELDNKEKKLKHLEDSLEDYNRK 836
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERL-------------------------EEALEELREELEEAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 837 FAVIRHQQSLLYKEYLSEKDIWKTdsemirEEKRKLEDQAEQDAVKV-KEYNNLLSALQMDSNEMKKMLSENSRKITVLQ 915
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKN------QSGLSGILGVLSELISVdEGYEAAIEAALGGRLQAVVVENLNAAKKAIAF 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 916 VNEKSLIRQyTTLVEMERHLRKENGKHRNdviaMEAEVTEKLGSLQRFKEMAIFKIAALQKVIDNSVSLSELELANKQYN 995
Cdd:TIGR02168 565 LKQNELGRV-TFLPLDSIKGTEIQGNDRE----ILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 996 ELTTKYRDI-----------------LQKDNMLVQRTSNLEHLECENASLKEQMEAISKELEITKEKLHTIEQAWEQETK 1058
Cdd:TIGR02168 640 KLRPGYRIVtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1059 LGNDsnmdkakksmtnsdivsISKKITVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFTELTKiNLDAQK 1138
Cdd:TIGR02168 720 ELEE-----------------LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-ELAEAE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1139 VEQMLRDELADSVTKAVSdADRQRILELEKSEVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQ 1218
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELK-ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1219 -SDEKALIAKLHQHVVSLQISEATALGKLESVTSKLQKMEAYNLRLEQKLDEKEQALYYARL---EGRNRAKHLRQTIQS 1294
Cdd:TIGR02168 861 iEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREklaQLELRLEGLEVRIDN 940
|
....*.
gi 568967308 1295 LRRQFS 1300
Cdd:TIGR02168 941 LQERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
113-712 |
3.06e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 3.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 113 LRDEIRQLEKQLEQKDRELEDMEK--ELDKEKKV--NEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLL 188
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERyrELKEELKEleAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 189 SRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIK 268
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 269 KENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEwkliLSSKDDEIIEYQQMLQSLRGKLKNAQLDADksnimALKQ 348
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE----LLEALRAAAELAAQLEELEEAEEALLERLE-----RLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 349 GIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKgtsnfyqqthymKIHSKVQILEEKTKEAERIAELAEADA 428
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL------------ELLAELLEEAALLEAALAELLEELAEA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 429 REKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPK-- 506
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKaa 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 507 -----TMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASGLTIDDLNLSETFSHEN 581
Cdd:COG1196 570 kagraTFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 582 KIEGRKLNFMSLNNMNETQSKNETIVQDLPIQEEQSRNAELELDHQRSQAEQNEFLSRELAEKEKDLERSRTVIAKFQSK 661
Cdd:COG1196 650 TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 568967308 662 LKELVEENKQLEEGMKEILQAIKDMPKDSDVKGGETSLIIPSLERLVNAME 712
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1810-2476 |
6.86e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 6.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1810 RELKSQIEDLNENLLKLKEALKTSKNKENSL------ADDLNELNNELQKKQKAYnkILREKDGIDQENDELRRQIKRLS 1883
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLerqaekAERYKELKAELRELELAL--LVLRLEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1884 SGLQS-KTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKpVKEKSSKEELIRweegkKWQTKVEGLRNRLKEKEGEAH 1962
Cdd:TIGR02168 253 EELEElTAELQELEEKLEELRLEVSELEEEIEELQKELYAL-ANEISRLEQQKQ-----ILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1963 GLAKQLNTLKELFAKADKEKLTLQKKLKTtgmtvdqvLGVRALESEKELEELKKKNLDLENDILYMRTQQALPRDSVvED 2042
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELES--------LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI-AS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2043 LHLQNKYLQEKLHTLEKKLSKEKYSQSL----TSEIESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQV 2118
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEEllkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2119 KDLKEMCEFLKKGKLELERKLGQVRGAGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEENRN- 2197
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNa 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2198 LKAELEKLKAHFGRQLSMQFESKNKGTEKIVAENERLRKE------LKKEIEASEKLRIAKNNLeLVNDKMAAQLE---E 2268
Cdd:TIGR02168 558 AKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIegflgvAKDLVKFDPKLRKALSYL-LGGVLVVDDLDnalE 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2269 TGKRLQFAE----------SRAPQLEGADSKSWKSIVVSRV----YETKMKELESDIAKKNQSITDLKQLVREATEREQK 2334
Cdd:TIGR02168 637 LAKKLRPGYrivtldgdlvRPGGVITGGSAKTNSSILERRReieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2335 AKKYTEDLEQQIEILKNVPEGAETEQELIRE-LQLLRLANNQMDKERAELIHQIEINKDQTRADSSipDSDQLKEKINDL 2413
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEErIAQLSKELTELEAEIEELEERLEEAEEELAEAEA--EIEELEAQIEQL 794
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568967308 2414 ETQLRKL-----ELEKQHSKEEVKKLKKElenfdpsffEEIEDLKYNYKEEVKKNILLEEKLKKLSEQ 2476
Cdd:TIGR02168 795 KEELKALrealdELRAELTLLNEEAANLR---------ERLESLERRIAATERRLEDLEEQIEELSED 853
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
109-365 |
3.07e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 3.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 109 DTRFLRDEIRQLEKQLEQKDRELEDMEKELDK-EKKVNEQLALRNE------EAENENSKLRRENEQLRQDIIDYQKQID 181
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRiENRLDELSQELSDasrkigEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 182 SQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTL--TEANEKIEVQNQEMRKnLEESVQEMEKMTDEYNRMKALVHQ 259
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSK-LEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 260 SDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDdpvmmavNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLKN--AQLD 337
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL-------NGKKEELEEELEELEAALRDLESRLGDLKKERDEleAQLR 899
|
250 260
....*....|....*....|....*...
gi 568967308 338 ADKSNIMALKQGIQERDSQIKMLTEQVE 365
Cdd:TIGR02169 900 ELERKIEELEAQIEKKRKRLSELKAKLE 927
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
230-999 |
4.69e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 4.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 230 QEMRKNLEESVQEMEKMTD---EYNR-MKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEE 305
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDilnELERqLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 306 wkliLSSKDDEIIEYQQMLQSLRGKL--KNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKN 383
Cdd:TIGR02168 255 ----LEELTAELQELEEKLEELRLEVseLEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 384 ELQKDKgtsnfyqqthymkihSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCK 463
Cdd:TIGR02168 331 KLDELA---------------EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 464 AQIKirdGEMEVLTKEINKLEMKINDILDENEALRERagLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEER 543
Cdd:TIGR02168 396 ASLN---NEIERLEARLERLEDRRERLQQEIEELLKK--LEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 544 LDLKRKIRQMAQERGKRNAASGLTIDDLNLSETFSHENKI-----EGRKLNFMSLNNMNETQSKNET--------IVQDL 610
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAllknqSGLSGILGVLSELISVDEGYEAaieaalggRLQAV 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 611 PIQEEQSRNAELELDHQRSQAEQNEFL--SRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEIL-------- 680
Cdd:TIGR02168 551 VVENLNAAKKAIAFLKQNELGRVTFLPldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvdd 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 681 --QAIKDMPKdsdvKGGETSLIIPSLERL-----VNAMESKNAEGIFD---ASLHLKAQVDQLTGRNEELRQELRQSRKE 750
Cdd:TIGR02168 631 ldNALELAKK----LRPGYRIVTLDGDLVrpggvITGGSAKTNSSILErrrEIEELEEKIEELEEKIAELEKALAELRKE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 751 AVNYSQQLVKANLKIDHLEKETDLLRQSAG-----SNVVYKGIDLPDGIAPSSAYIINSQNEYLIHLLQELDNKEKKLKH 825
Cdd:TIGR02168 707 LEELEEELEQLRKELEELSRQISALRKDLArleaeVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 826 LEDSLEDYNRKFAVIRHQQSLLYKEY----------LSEKDIWKTDSEMIREEKRKLEDQAEQDAVKVKEYNNLLSALQM 895
Cdd:TIGR02168 787 LEAQIEQLKEELKALREALDELRAELtllneeaanlRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 896 DSNEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEMERHLRKENGKHRNDVIameaEVTEKLGSLQRFKEMAIFKIAALQ 975
Cdd:TIGR02168 867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE----ELREKLAQLELRLEGLEVRIDNLQ 942
|
810 820
....*....|....*....|....
gi 568967308 976 KVIDNSVSLsELELANKQYNELTT 999
Cdd:TIGR02168 943 ERLSEEYSL-TLEEAEALENKIED 965
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-459 |
7.21e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 7.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 75 KAGEEQAKFENQLKTKVMKLENELEMAQQsaggrDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEE 154
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEE-----ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 155 AENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRK 234
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 235 NLEESVQEMEKMTDEynrmkalvhqsdavMDQIKKENEHYRLQVRELTDLLKAKDEEddpvMMAVNAKVEEWKLILSSKD 314
Cdd:TIGR02168 839 RLEDLEEQIEELSED--------------IESLAAEIEELEELIEELESELEALLNE----RASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 315 DEIIEYQQMLQSLRGKLKNAQLDADKSNiMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKdkgtsnf 394
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLE-LRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR------- 972
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568967308 395 yqqthymkihsKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEI 459
Cdd:TIGR02168 973 -----------RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1666-2426 |
8.32e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 8.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1666 LTKLKKVSKDLEKQKEitelkvrefentKLRLQETHASEVKKVKAEVEDLRHALAQAHKdsQSLKSELQAQKEAnsrapt 1745
Cdd:TIGR02168 188 LDRLEDILNELERQLK------------SLERQAEKAERYKELKAELRELELALLVLRL--EELREELEELQEE------ 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1746 ttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANlNVQQVVERHTRELKSQIEDLNENLLK 1825
Cdd:TIGR02168 248 ------LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA-NEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1826 LKEALKTSKNKENSLADDLNELNNELQKKQKaynkilrEKDGIDQENDELRRQIKRLSSGLQSK-TLIDNKQSLIDELQK 1904
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKE-------ELESLEAELEELEAELEELESRLEELeEQLETLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1905 KVKKLESQLERKVDDVDIKPVKEKSSKEElIRWEEGKKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLT 1984
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQE-IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1985 LQKKLKTTGMTVDQvLGVRALESEKELEELKKKNLDLENdILYMRTQQALPRDSVVEDLHLQNKYLQEKLHTLEKKLske 2064
Cdd:TIGR02168 473 AEQALDAAERELAQ-LQARLDSLERLQENLEGFSEGVKA-LLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRL--- 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2065 kysQSLTseIESDDHCQKEQELQKENLKLSSENIELkfqleqankdlprlknqvkDLKEMCEFLKKGKLELERKLGQVRG 2144
Cdd:TIGR02168 548 ---QAVV--VENLNAAKKAIAFLKQNELGRVTFLPL-------------------DSIKGTEIQGNDREILKNIEGFLGV 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2145 AGRSGKTIPELEKTIGLM---KKVVEKVQRENEQLKKasgiltsekmatIEEENRNLKAELEKLKAHFgrQLSMQFESKN 2221
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYLlggVLVVDDLDNALELAKK------------LRPGYRIVTLDGDLVRPGG--VITGGSAKTN 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2222 KGTEKIVAENERLRKELKkeiEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYE 2301
Cdd:TIGR02168 670 SSILERRREIEELEEKIE---ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2302 TKMKELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKNVPEGAETE--------QELIRELQLLRLAN 2373
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldelraelTLLNEEAANLRERL 826
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 568967308 2374 NQMDKERAELIHQIEINKDQTRADSSipDSDQLKEKINDLETQLRKLELEKQH 2426
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSE--DIESLAAEIEELEELIEELESELEA 877
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1504-2273 |
8.98e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 8.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1504 EKLKEKESALRLAEQNILSRDKVINELRLRLPaTADREKLIAELERKELEPKSHHTMKIAHQTIANMQARLNHKEEVLKK 1583
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLK-SLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1584 YQHLLEKAREEQREIVKKHEEdLHVLHHKLEQQAdnslnkfrQTAQDLLKQspapvptnkHFIRLAEMEQTVAEQDDSLS 1663
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEE-LRLEVSELEEEI--------EELQKELYA---------LANEISRLEQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1664 SLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQEthasevkkVKAEVEDLRHALAQAHKDSQSLKSELQAQKEAnsra 1743
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEE--------LKEELESLEAELEELEAELEELESRLEELEEQ---- 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1744 ptttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAE--ERIIAVTSQKEANLNVQQVVERHTR---------EL 1812
Cdd:TIGR02168 381 --------LETLRSKVAQLELQIASLNNEIERLEARLERLEDrrERLQQEIEELLKKLEEAELKELQAEleeleeeleEL 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1813 KSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNE---LQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQ-- 1887
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARldsLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvd 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1888 -------SKTLIDNKQSLIDELQKKVKK-LESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEG 1959
Cdd:TIGR02168 533 egyeaaiEAALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDP 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1960 EAHG--------------LAKQLNTLKEL-----------------------FAKADKEKLTLQKKLKTTGMTVDQvLGV 2002
Cdd:TIGR02168 613 KLRKalsyllggvlvvddLDNALELAKKLrpgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIEE-LEE 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2003 RALESEKELEELKKKNLDLENDilymrtqqalprdsvVEDLHLQNKYLQEKLHTLEKKLSK-EKYSQSLTSEIESDDHCQ 2081
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEE---------------LEQLRKELEELSRQISALRKDLARlEAEVEQLEERIAQLSKEL 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2082 KEQELQKEnlKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRG-AGRSGKTIPELEKTIG 2160
Cdd:TIGR02168 757 TELEAEIE--ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeAANLRERLESLERRIA 834
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2161 LMKKVVEKVQRENEQLKKASGILTSEkMATIEEENRNLKAELEKLKAHFgRQLSMQFESKNKGTEKIVAENERLRKELKK 2240
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAE-IEELEELIEELESELEALLNER-ASLEEALALLRSELEELSEELRELESKRSE 912
|
810 820 830
....*....|....*....|....*....|...
gi 568967308 2241 EIEASEKLRIAKNNLELVNDKMAAQLEETGKRL 2273
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1763-2411 |
1.27e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1763 EKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQvvERHTRELKSQIEDLNENLLKLKEALKTS-----KNKE 1837
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE--ARKADELKKAEEKKKADEAKKAEEKKKAdeakkKAEE 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1838 NSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSliDELQKKVKKLESQLE--R 1915
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK--EEAKKKADAAKKKAEekK 1391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1916 KVDDVDIKPVKEKSSKEELIRWEEGKKwqtkveglrnrlkeKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTTGMT 1995
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKK--------------KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1996 VDQVLGVRALESEKELEELKKKNLDLENDILYMRTQQALPRDSVVEDLHLQNKYLQEKLHTLEKKLSKE---KYSQSLTS 2072
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEakkAEEAKKAD 1537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2073 EIESDDHCQKEQELQK-ENLKLSSE--NIELKFQLEQANKDLPRLKNQVKDLKE--MCEFLKKGKLELERKLGQVRGAGR 2147
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKaEELKKAEEkkKAEEAKKAEEDKNMALRKAEEAKKAEEarIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2148 SGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEENRNLKAELEKLKAhfgRQLSMQFESKNKGTEKI 2227
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA---EEAKKAEEDEKKAAEAL 1694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2228 VAENERLRK-ELKKEIEASEKlriaknnlelvndKMAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYETKMKE 2306
Cdd:PTZ00121 1695 KKEAEEAKKaEELKKKEAEEK-------------KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2307 LESDIAKKNQSITDLKQLV------REATEREQKAKKYTEDLEQQIEIL-----KNVPEGAETEQELIRELQLLRLANNq 2375
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVieeeldEEDEKRRMEVDKKIKDIFDNFANIieggkEGNLVINDSKEMEDSAIKEVADSKN- 1840
|
650 660 670
....*....|....*....|....*....|....*.
gi 568967308 2376 MDKERAELIHQIEINKDQTRADSSIPDSDQLKEKIN 2411
Cdd:PTZ00121 1841 MQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDL 1876
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
54-187 |
1.67e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 53.32 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 54 ITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfLRDEIRQLEKQLEQKDRELED 133
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER------------LEAEVEELEAELEEKDERIER 445
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568967308 134 MEKELDKEKKVNEQLALRNEEAenenSKLRRENEQLRQDIIDYQKQIDSQKESL 187
Cdd:COG2433 446 LERELSEARSEERREIRKDREI----SRLDREIERLERELEEERERIEELKRKL 495
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1375-1915 |
2.01e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 2.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1375 KIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELERQLDIFDHQQNEIL 1454
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1455 SAAQKFEDSTGSMpdpslplpNQLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRL 1534
Cdd:COG1196 348 EAEEELEEAEAEL--------AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1535 PATADREKLIAELERKELEPKSHHTMKIAHQTIANMQARLNHKEEVLKKYQhlLEKAREEQREIVKKHEEDLHVLHHKLE 1614
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE--EAALLEAALAELLEELAEAAARLLLLL 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1615 QQADNSLNKFRQTAQDLLKQSPAPVPtnKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKvrefENTK 1694
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLK----AAKA 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1695 LRLQETHASEVKKVKAEVEDlrHALAQAHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKqqKALSRALL 1774
Cdd:COG1196 572 GRATFLPLDKIRARAALAAA--LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA--VTLAGRLR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1775 ELRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKK 1854
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568967308 1855 QKAYNKILREKDGIDQENDELRRQIKRLSSGLQSktlidnkqslIDELQKKVKKLESQLER 1915
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPD----------LEELERELERLEREIEA 778
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1660-1912 |
2.24e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.38 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1660 DSLSSLLTKLKKvSKDLEKQKEITelkVREFENTKLRLQEThasevKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEA 1739
Cdd:PRK11281 39 ADVQAQLDALNK-QKLLEAEDKLV---QQDLEQTLALLDKI-----DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1740 NSRAPTTTMRNL-VDRLKSQLALKEKQQKALSRALLELRSEMTAA--AEERiiavtSQKEANLNVQQvverhTRELKSQI 1816
Cdd:PRK11281 110 NDEETRETLSTLsLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLqtQPER-----AQAALYANSQR-----LQQIRNLL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1817 EDLNENLLKLKEALKTSKNKENSLADdlneLNNELQKKQKAYNKILreKDGIDQENDELRRQIKRLSSGLQS-KTLIDNK 1895
Cdd:PRK11281 180 KGGKVGGKALRPSQRVLLQAEQALLN----AQNDLQRKSLEGNTQL--QDLLQKQRDYLTARIQRLEHQLQLlQEAINSK 253
|
250
....*....|....*..
gi 568967308 1896 QslIDELQKKVKKLESQ 1912
Cdd:PRK11281 254 R--LTLSEKTVQEAQSQ 268
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
992-1882 |
2.27e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 992 KQYNELTTKYRDiLQKDNMLVQRTSNLEHLEcenaSLKEQMEAISKELEITKEKLHTIEQAWEqETKLGnDSNMDKAKKS 1071
Cdd:TIGR02168 213 ERYKELKAELRE-LELALLVLRLEELREELE----ELQEELKEAEEELEELTAELQELEEKLE-ELRLE-VSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1072 MTnSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFTELTKINLDAQKVEQMLRDELadsv 1151
Cdd:TIGR02168 286 LQ-KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL---- 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1152 tkavsDADRQRILELEKSEVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESL---RTQLLDFQAQSDEKALIAKL 1228
Cdd:TIGR02168 361 -----EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLedrRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1229 HQHVVSLQISEATalgkLESVTSKLQKMEAYNLRLEQKLDEKEQALYYARlEGRNRAKHLRQTIQSLRRQFSG-----AL 1303
Cdd:TIGR02168 436 KELQAELEELEEE----LEELQEELERLEEALEELREELEEAEQALDAAE-RELAQLQARLDSLERLQENLEGfsegvKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1304 PLAQQEKFSKTMIQLQnDKLKIMQE----MKNSQQEHRN---MENKTlelelklkGLEELISTLKDARGAQKVINWHVKI 1376
Cdd:TIGR02168 511 LLKNQSGLSGILGVLS-ELISVDEGyeaaIEAALGGRLQavvVENLN--------AAKKAIAFLKQNELGRVTFLPLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1377 EELRLQelKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQReveleRQLDifdhQQNEILSA 1456
Cdd:TIGR02168 582 KGTEIQ--GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELA-----KKLR----PGYRIVTL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1457 AQKFEDSTGSMPDPSLPLPNQLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLpa 1536
Cdd:TIGR02168 651 DGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI-- 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1537 tADREKLIAELERKelepkshhtmkiaHQTIANMQARLNHKEEVLKKYQHLLEKAREEQREIVKKHEEDLhvlhHKLEQQ 1616
Cdd:TIGR02168 729 -SALRKDLARLEAE-------------VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI----EELEAQ 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1617 ADNSLNKFRQTAQDLLKQSPAPVPTNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFEntklR 1696
Cdd:TIGR02168 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE----E 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1697 LQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANSRAptttmRNLVDRLKSQLA-LKEKQQKALSRaLLE 1775
Cdd:TIGR02168 867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL-----RRELEELREKLAqLELRLEGLEVR-IDN 940
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1776 LRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNE-NLLKLKEALKTSKNKENSLA--DDLNELNNELQ 1852
Cdd:TIGR02168 941 LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPvNLAAIEEYEELKERYDFLTAqkEDLTEAKETLE 1020
|
890 900 910
....*....|....*....|....*....|..
gi 568967308 1853 KKQKAYNKILRE--KDGIDQENDELRRQIKRL 1882
Cdd:TIGR02168 1021 EAIEEIDREARErfKDTFDQVNENFQRVFPKL 1052
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1648-2424 |
2.89e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1648 LAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITEL--KVREFENTKL--RLQETHAS-------------EVKKVKA 1710
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALlkEKREYEGYELlkEKEALERQkeaierqlasleeELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1711 EVEDLRHALAQAHKDSQSLKSELQAQKEANSRAPTTTMRNL---VDRLKSQLALKEKQQKALSRALLELRSEMTAAAEER 1787
Cdd:TIGR02169 259 EISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELeaeIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1788 IIAVTSQKEANLNVQQVVERHtRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDG 1867
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEY-AELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1868 IDQENDELRRQIKRLSSGLqsKTLIDNKQSLIDE----------LQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRW 1937
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKI--NELEEEKEDKALEikkqewkleqLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1938 E-EGKKWQTKVEGLRNR---LKEKEGEAHGLAKQLNTLKELFAKA-------------------DKEKLTLQKKLKTTGM 1994
Cdd:TIGR02169 496 EaQARASEERVRGGRAVeevLKASIQGVHGTVAQLGSVGERYATAievaagnrlnnvvveddavAKEAIELLKRRKAGRA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1995 TVDQVLGVRALESEKELEELKKKNLDLENDILYMRT-----QQALPRDSVVEDLHLQNKYL-QEKLHTLEKKLSKEkySQ 2068
Cdd:TIGR02169 576 TFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKyepafKYVFGDTLVVEDIEAARRLMgKYRMVTLEGELFEK--SG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2069 SLTSEIESDDHCQKEQELQKENLKLSSENIE-LKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRG-AG 2146
Cdd:TIGR02169 654 AMTGGSRAPRGGILFSRSEPAELQRLRERLEgLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQeEE 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2147 RSGKTIPELEKTIGLMKKVVEKVQRENEQLKKasgiltseKMATIEEENRNLKAELEKLKAHFGRQLSMQFESKNKGTEK 2226
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEA--------RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEE 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2227 IVAENERLRKELKKEIEAS----EKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEgadskswksivvsrvyeT 2302
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLtlekEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE-----------------E 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2303 KMKELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILK-NVPEGAETEQELIRELQLLRLANNQMDKERA 2381
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRkRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 568967308 2382 EL--IHQIEINKDQTRADSS---------IPDSDQLKEKINDLETQLRKLELEK 2424
Cdd:TIGR02169 949 EElsLEDVQAELQRVEEEIRalepvnmlaIQEYEEVLKRLDELKEKRAKLEEER 1002
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
79-379 |
4.37e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 4.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 79 EQAKFENQLKTKVMKLENELEMAQQSAGGRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENE 158
Cdd:TIGR02169 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 159 NSKLRRENEQLRQDIIdyQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEE 238
Cdd:TIGR02169 781 LNDLEARLSHSRIPEI--QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 239 SVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELT---DLLKAKDEEDDPVMMAVNAKVEEWKLILSSKDD 315
Cdd:TIGR02169 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELErkiEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568967308 316 ---EIIEYQQMLQSLrGKLKnAQLDADKSNIMALK----QGIQERDSQIKMLTEQVEQYTKEMEKNTFIIE 379
Cdd:TIGR02169 939 pkgEDEEIPEEELSL-EDVQ-AELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
813-1721 |
4.53e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 4.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 813 LQELDNKEKKLKHLEDSLEDYNRKFAVIRHQ--QSLLYKEYLSE-----KDIWKTDSEMIREEKRKLEDQAEQDAVKVKE 885
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQaeKAERYKELKAElreleLALLVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 886 YNNLLSALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEMERHLRKEngkhRNDVIAMEAEVTEKLGSLQRFKE 965
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER----LANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 966 MAIFKIAALQKVIDnsVSLSELELANKQYNELTTKYRDILQKdnmLVQRTSNLEHLECENASLKEQMEAISKELEITKEK 1045
Cdd:TIGR02168 334 ELAEELAELEEKLE--ELKEELESLEAELEELEAELEELESR---LEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1046 LHTIEQAWE--QETKLGNDSNMDKAKKSMTNSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELE 1123
Cdd:TIGR02168 409 LERLEDRRErlQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1124 TKFTELTKINLDAQKVEQMLRDELADsvtKAVSDADRQRILELEKSEVELKVEVSK---------LREISDIAKRQVDFL 1194
Cdd:TIGR02168 489 ARLDSLERLQENLEGFSEGVKALLKN---QSGLSGILGVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1195 nsqqqsreKEVESLRTQLLDFQAQSDekALIAKLHQHVVSLQISEATALGKLESVTSKLQKMEAYNLRLEQKLDEKEQAL 1274
Cdd:TIGR02168 566 --------KQNELGRVTFLPLDSIKG--TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1275 YYARLEGRnrakhlRQTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDklkimQEMKNSQQEHRNMENKTLELELKLKGLE 1354
Cdd:TIGR02168 636 ELAKKLRP------GYRIVTLDGDLVRPGGVITGGSAKTNSSILERR-----REIEELEEKIEELEEKIAELEKALAELR 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1355 ELISTLKDArgaqkvinwhvkIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQ 1434
Cdd:TIGR02168 705 KELEELEEE------------LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1435 REVELERQLDIFDHQQNEIlsaaqkfedstgsmpdpslplpNQLEIALRKIKENIQvilKTQATCKSLEEKLKEKESALR 1514
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQI----------------------EQLKEELKALREALD---ELRAELTLLNEEAANLRERLE 827
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1515 LAEQNILSRDKVINELRLRLP-ATADREKLIAELERKELEPKSHhtmkiaHQTIANMQARLNHKEEVLKKYQHLLEKARE 1593
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEeLSEDIESLAAEIEELEELIEEL------ESELEALLNERASLEEALALLRSELEELSE 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1594 EQREI---VKKHEEDLHVLHHKLEqQADNSLNKFRQTAQDLLKQSpapvpTNKHFIRLAEMEQTVAEQDDSLSSLLTKLK 1670
Cdd:TIGR02168 902 ELRELeskRSELRRELEELREKLA-QLELRLEGLEVRIDNLQERL-----SEEYSLTLEEAEALENKIEDDEEEARRRLK 975
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|.
gi 568967308 1671 KVSKDLEKQKEITELKVREFENTKLRLQEthasevkkVKAEVEDLRHALAQ 1721
Cdd:TIGR02168 976 RLENKIKELGPVNLAAIEEYEELKERYDF--------LTAQKEDLTEAKET 1018
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
429-685 |
9.59e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.08 E-value: 9.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 429 REKDKELVEALkrlkdYESGVYGLEDAVIEIKNckaqikirdgemEVLTKEINKLeMKINDILDENEALRERAGLEPKTM 508
Cdd:PRK05771 15 KSYKDEVLEAL-----HELGVVHIEDLKEELSN------------ERLRKLRSLL-TKLSEALDKLRSYLPKLNPLREEK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 509 IDLTEFRNSKRLKQQQYRAENqvLLKEIESLEEERLDLKRKIRQMAQERG--KRNAASGLTIDDLNLSETFS------HE 580
Cdd:PRK05771 77 KKVSVKSLEELIKDVEEELEK--IEKEIKELEEEISELENEIKELEQEIErlEPWGNFDLDLSLLLGFKYVSvfvgtvPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 581 NKIEGRKLNFMSLNNMNETQSKNETIV------QDLPIQEEQSRNAE---LELDHQRSQAEQNEFLSRELAEKEKDLERS 651
Cdd:PRK05771 155 DKLEELKLESDVENVEYISTDKGYVYVvvvvlkELSDEVEEELKKLGferLELEEEGTPSELIREIKEELEEIEKERESL 234
|
250 260 270
....*....|....*....|....*....|....
gi 568967308 652 RtviakfqSKLKELVEENKQLEEGMKEILQAIKD 685
Cdd:PRK05771 235 L-------EELKELAKKYLEELLALYEYLEIELE 261
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1755-2421 |
1.24e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1755 LKSQLALKEKQQKALSRALlELRSEmtaaAEERiiavtsQKEANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSK 1834
Cdd:COG1196 198 LERQLEPLERQAEKAERYR-ELKEE----LKEL------EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1835 NKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLssglqsktlidnkQSLIDELQKKVKKLESQLE 1914
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL-------------EERLEELEEELAELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1915 RKvddvdikpvkekssKEELIRWEEgkkwqtkveglrnRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKklkttgm 1994
Cdd:COG1196 334 EL--------------EEELEELEE-------------ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE------- 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1995 tvdqvlgvRALESEKELEELKKKNLDLENDILYMRTQQAlprdsvvEDLHLQNKYLQEKlhtlekklsKEKYSQSLTSEI 2074
Cdd:COG1196 380 --------ELEELAEELLEALRAAAELAAQLEELEEAEE-------ALLERLERLEEEL---------EELEEALAELEE 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2075 ESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRGAGRSGKTIPE 2154
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2155 LEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEENRNLKAELEKLKAHFGRQLSmqFESKNKGTEKIVAENERL 2234
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT--FLPLDKIRARAALAAALA 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2235 RKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKswKSIVVSRVYETKMKELESDIAKK 2314
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE--VTLEGEGGSAGGSLTGGSRRELL 671
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2315 NQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKnvpEGAETEQELIRELQLLRLANNQMDKERAELIHQIEINKDQT 2394
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEER---ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
650 660 670
....*....|....*....|....*....|..
gi 568967308 2395 RAD-----SSIPDSDQLKEKINDLETQLRKLE 2421
Cdd:COG1196 749 EEEaleelPEPPDLEELERELERLEREIEALG 780
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1583-1987 |
1.38e-05 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 50.53 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1583 KYQHLLEKAREEQREIVKKHEEDLHVLHHKLEQQADnslnKFRQTAQDLLKQSPAPVPTNKHFIRLAEMEQTVA------ 1656
Cdd:pfam09731 31 NFRDFFEEYIPYGEEVVLYALGEDPPLAPKPKTFRP----LQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEvaeeek 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1657 -EQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQA 1735
Cdd:pfam09731 107 eATKDAAEAKAQLPKSEQEKEKALEEVLKEAISKAESATAVAKEAKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1736 QKEANSRAPTTTM----RNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVVerhtRE 1811
Cdd:pfam09731 187 KAEALAEKLKEVInlakQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQ----QE 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1812 LKSQIEDLNENLlklKEALKTSKNKENSLAD----DLNELNNELQKKQKAYNKilREKDGIDQENDELRRQIKRLSSGLQ 1887
Cdd:pfam09731 263 LVSIFPDIIPVL---KEDNLLSNDDLNSLIAhahrEIDQLSKKLAELKKREEK--HIERALEKQKEELDKLAEELSARLE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1888 SKTLIDNKQsLIDELQKKV--------KKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEG 1959
Cdd:pfam09731 338 EVRAADEAQ-LRLEFEREReeiresyeEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLQDIKEKVEEERAGRLLKLN 416
|
410 420
....*....|....*....|....*...
gi 568967308 1960 EAHGLAKQLNTLKELFAKADKEKLTLQK 1987
Cdd:pfam09731 417 ELLANLKGLEKATSSHSEVEDENRKAQQ 444
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
113-556 |
2.08e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 2.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 113 LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRG 192
Cdd:PRK02224 277 LAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 193 EDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDeynrmkalvhqsdavmdqikkene 272
Cdd:PRK02224 357 RAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED------------------------ 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 273 hyrlqvrELTDLLKAKDEeddpvmmaVNAKVEEWKLILSSKDDEIIEYQQMLQSlrGKLKNAQLDADKSNIMAlkqGIQE 352
Cdd:PRK02224 413 -------FLEELREERDE--------LREREAELEATLRTARERVEEAEALLEA--GKCPECGQPVEGSPHVE---TIEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 353 RDSQIKMLTEQVEQYTKEmekntfiIEDLKNELQKDKGTSnfyqqthymKIHSKVQILEEKTKEAERIAELAEADAREKD 432
Cdd:PRK02224 473 DRERVEELEAELEDLEEE-------VEEVEERLERAEDLV---------EAEDRIERLEERREDLEELIAERRETIEEKR 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 433 KELVEALKRLKDYESGVYGLEDAV----IEIKNCKAQIKIRDGEMEVLTKEINKLEmKINDILDENEALRERAGLEPKTM 508
Cdd:PRK02224 537 ERAEELRERAAELEAEAEEKREAAaeaeEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKR 615
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568967308 509 IDLTEFRNSKRLKQQQYRAENQVLLkeiESLEEERLDLKRKIRQMAQE 556
Cdd:PRK02224 616 EALAELNDERRERLAEKRERKRELE---AEFDEARIEEAREDKERAEE 660
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1393-2284 |
3.14e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 3.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1393 GKEEIKylnNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELERQLDIFDHQQNEILSAAQKFEDSTGSmpdpsl 1472
Cdd:pfam15921 72 GKEHIE---RVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQED------ 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1473 pLPNQLEIALRKIKeniqvilktqaTCKSL-EEKLKEKESALRLAEQNILSRDKVINELRLRLP--ATADREKL-----I 1544
Cdd:pfam15921 143 -LRNQLQNTVHELE-----------AAKCLkEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVdfEEASGKKIyehdsM 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1545 AELERKELEPKSHHTMKIAHQTIANMQARLNHKEEVLK--------KYQHLLEKAREEQREIVKKHEEDLHVLHHKlEQQ 1616
Cdd:pfam15921 211 STMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEalksesqnKIELLLQQHQDRIEQLISEHEVEITGLTEK-ASS 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1617 ADNSLNKFRqtAQDLLKQSPAPVPTNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITelkvrefeNTKLR 1696
Cdd:pfam15921 290 ARSQANSIQ--SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLA--------NSELT 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1697 LQETHASEVKKVKAEVED-LRHALAQAHKDSQslksELQAQKEANSRAPTTTMRN--LVDRLKSQLALKEKQQKALSRAL 1773
Cdd:pfam15921 360 EARTERDQFSQESGNLDDqLQKLLADLHKREK----ELSLEKEQNKRLWDRDTGNsiTIDHLRRELDDRNMEVQRLEALL 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1774 LELRSEMTAAAEERIIAVTSQKEANLNVQQvverhtreLKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQK 1853
Cdd:pfam15921 436 KAMKSECQGQMERQMAAIQGKNESLEKVSS--------LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1854 KQKAynkilrekdgidqendelrrqikrlssglqsktlidnkqslIDELQKKVKKLESQLerkvdDVDIKPVKEKSSKEE 1933
Cdd:pfam15921 508 KERA-----------------------------------------IEATNAEITKLRSRV-----DLKLQELQHLKNEGD 541
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1934 LIRweegkKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADK-------EKLTLQKKLKTTGMTVdQVLGVRALE 2006
Cdd:pfam15921 542 HLR-----NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRtagamqvEKAQLEKEINDRRLEL-QEFKILKDK 615
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2007 SEKELEELKKKNLDLENDILYMrTQQALPRDSVVEDLHLQNKYLQEKLHTLEKKLSkekysqSLTseiesddhcqKEQEL 2086
Cdd:pfam15921 616 KDAKIRELEARVSDLELEKVKL-VNAGSERLRAVKDIKQERDQLLNEVKTSRNELN------SLS----------EDYEV 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2087 QKENLKLSSENIE-----LKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRGagrsgkTIPELEKTIGL 2161
Cdd:pfam15921 679 LKRNFRNKSEEMEtttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRG------QIDALQSKIQF 752
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2162 MKKVVEKVQRENEQLKKASGILtSEKMATIEEENRNLKAELEKLKAhfgrqlsmqfesknkgtekivaENERLRKELKke 2241
Cdd:pfam15921 753 LEEAMTNANKEKHFLKEEKNKL-SQELSTVATEKNKMAGELEVLRS----------------------QERRLKEKVA-- 807
|
890 900 910 920
....*....|....*....|....*....|....*....|...
gi 568967308 2242 ieaseklriaknNLELVNDKMAAQLEETGKRLQFAESRAPQLE 2284
Cdd:pfam15921 808 ------------NMEVALDKASLQFAECQDIIQRQEQESVRLK 838
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1016-1553 |
3.67e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1016 SNLEHLEcENASLKEQMEAISKELEITK--EKLHTIEQAWEQETKLGNDSNMDKAKKSMTNSDIVSISKKITVLEMKELN 1093
Cdd:COG1196 200 RQLEPLE-RQAEKAERYRELKEELKELEaeLLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1094 ERQRAEHCQKMYEHLRTSLKQME-------ERNFELETKFTELTKINLDAQKVEQMLRDELADSVTKAVSDADRQRILEL 1166
Cdd:COG1196 279 LELELEEAQAEEYELLAELARLEqdiarleERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1167 EKSEVELKvEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKALIAKLHQHVVSLQISEATALGKL 1246
Cdd:COG1196 359 ELAEAEEA-LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1247 ESVTSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRqfsgalpLAQQEKFSKTMIQLQNDKLKIM 1326
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE-------AAARLLLLLEAEADYEGFLEGV 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1327 QEMKNSQQ---------EHRNMENKTLELELKLKGLEELISTLKDARGAQKVINWHVKIEELRLQELKLNRELVKGKEEI 1397
Cdd:COG1196 511 KAALLLAGlrglagavaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAA 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1398 KYLNNIISEYEHTINSLEEEivqqskfHEERQMAWDQREVELERQLDIFDHQQNEILSAAQKFEDSTGSMPDpSLPLPNQ 1477
Cdd:COG1196 591 ALARGAIGAAVDLVASDLRE-------ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG-GSAGGSL 662
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568967308 1478 LEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELE 1553
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1573-2421 |
3.88e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1573 RLNHKEEVLKKYQHLLEKARE-EQREIVKKHEEdlhvlHHKLEQQADNSLNKFRQTAQDLLKQSPApvpTNKHFIRLAEM 1651
Cdd:TIGR02169 202 RLRREREKAERYQALLKEKREyEGYELLKEKEA-----LERQKEAIERQLASLEEELEKLTEEISE---LEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1652 EQTVAEQDDSLSS-----LLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHaSEVKKVKAEVEDLRHALAQAHKDS 1726
Cdd:TIGR02169 274 LEELNKKIKDLGEeeqlrVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE-AEIDKLLAEIEELEREIEEERKRR 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1727 QSLKSELQAQKEAnsraptttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERiiavtsqkeanlnvqqvve 1806
Cdd:TIGR02169 353 DKLTEEYAELKEE------------LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI------------------- 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1807 rhtRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLssgl 1886
Cdd:TIGR02169 402 ---NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL---- 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1887 qsktlidnkQSLIDELQKKVKKLESQLERKvddvdikpvkeKSSKEELIRWEEGKKWQTKVeglrnrLKEKEGEAHGLAK 1966
Cdd:TIGR02169 475 ---------KEEYDRVEKELSKLQRELAEA-----------EAQARASEERVRGGRAVEEV------LKASIQGVHGTVA 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1967 QLNTLKELFAKA-------------------DKEKLTLQKKLKTTGMTVDQVLGVRALESEKELEELKKKNLDLENDILY 2027
Cdd:TIGR02169 529 QLGSVGERYATAievaagnrlnnvvveddavAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEF 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2028 MRT-----QQALPRDSVVEDLHLQNKYL-QEKLHTLEKKLSKEkySQSLTSEIESDDHCQKEQELQKENLKLSSENIE-L 2100
Cdd:TIGR02169 609 DPKyepafKYVFGDTLVVEDIEAARRLMgKYRMVTLEGELFEK--SGAMTGGSRAPRGGILFSRSEPAELQRLRERLEgL 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2101 KFQLEQANKDLPRLKNQVKDLKEMCEflkkgklELERKLGqvrgagrsgktipELEKTIGLMKKVVEKVQRENEQLKkas 2180
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELS-------DASRKIG-------------EIEKEIEQLEQEEEKLKERLEELE--- 743
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2181 giltsEKMATIEEENRNLKAELEKLKAhfgrQLSMQFESKNKGTEKIVAENERLRKELKKEIEAS-EKLRIAKNNLELVN 2259
Cdd:TIGR02169 744 -----EDLSSLEQEIENVKSELKELEA----RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElSKLEEEVSRIEARL 814
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2260 DKMAAQLEETGKRLQFAESRAPQLEgADSKSWKSIVVSRvyETKMKELESDIAKKNQSITDLKQLVREATEREQKAKKYT 2339
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQ-EQRIDLKEQIKSI--EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2340 EDLEQQIEILKNVPEGAETEQELIRELQLLRLANNQMDKERaelIHQIEINKDQTRADSS-IPDSDQLKEKINDLETQLR 2418
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE---LSEIEDPKGEDEEIPEeELSLEDVQAELQRVEEEIR 968
|
...
gi 568967308 2419 KLE 2421
Cdd:TIGR02169 969 ALE 971
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1090-1915 |
3.88e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1090 KELNERQRAEHCQKMYehLRTSLkqmeernFELETKFTELtkinldaqkveQMLRDELADsVTKAVSDADRQRILELEKS 1169
Cdd:pfam15921 92 RRLNESNELHEKQKFY--LRQSV-------IDLQTKLQEM-----------QMERDAMAD-IRRRESQSQEDLRNQLQNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1170 EVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKaliakLHQHVvSLQISEATALGKleSV 1249
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK-----IYEHD-SMSTMHFRSLGS--AI 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1250 TSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRQF--------SGALPLAQQEKFSKTMIQLQnd 1321
Cdd:pfam15921 223 SKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLiseheveiTGLTEKASSARSQANSIQSQ-- 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1322 kLKIMQEmknsqqehrNMENKTLELELKLKGLEELISTLK-DARGAQKVinWHVKIEELRLQELKLNRELVKGKEEIKYL 1400
Cdd:pfam15921 301 -LEIIQE---------QARNQNSMYMRQLSDLESTVSQLRsELREAKRM--YEDKIEELEKQLVLANSELTEARTERDQF 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1401 N----NIISEYEHTINSLEEEIVQQSKFHEERQMAWDqREVELERQLDIFDHQQNEILSAAQKFEDSTGSMPDPSLPLPN 1476
Cdd:pfam15921 369 SqesgNLDDQLQKLLADLHKREKELSLEKEQNKRLWD-RDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1477 QLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELrlrlpatadreklIAELERKElepks 1556
Cdd:pfam15921 448 RQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDL-------------TASLQEKE----- 509
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1557 hHTMKIAHQTIANMQARLNHKeevLKKYQHLlekareeqreivkKHEEDlHVLHHKLEQQADNSLNKFRQTAQDLLKQsp 1636
Cdd:pfam15921 510 -RAIEATNAEITKLRSRVDLK---LQELQHL-------------KNEGD-HLRNVQTECEALKLQMAEKDKVIEILRQ-- 569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1637 apvptnkhfiRLAEMEQTVAEQDDSLSSLLTKLKKVSKDL-EKQKEITELKV-REFENTKLRLQETHASE---------- 1704
Cdd:pfam15921 570 ----------QIENMTQLVGQHGRTAGAMQVEKAQLEKEInDRRLELQEFKIlKDKKDAKIRELEARVSDlelekvklvn 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1705 --------VKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEaNSRAPTTTMRNLVDRLKSQLalkEKQQKALSRALLEL 1776
Cdd:pfam15921 640 agserlraVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKR-NFRNKSEEMETTTNKLKMQL---KSAQSELEQTRNTL 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1777 RSEMTAAAEERIIAVTSQKEANLNvqqvverhtrelKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELqkkqk 1856
Cdd:pfam15921 716 KSMEGSDGHAMKVAMGMQKQITAK------------RGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQEL----- 778
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1857 ayNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSL-IDELQKKVKKLESQLER 1915
Cdd:pfam15921 779 --STVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLqFAECQDIIQRQEQESVR 836
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1660-2136 |
3.96e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1660 DSLSSLLTKLKKVSKDLEKQKEITELKVREFENtKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEA 1739
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEE-RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1740 NSRAPT-TTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMtAAAEERIIAVTSQKEANLNVQQVVERHTRElksQIED 1818
Cdd:PRK03918 313 EKRLSRlEEEINGIEERIKELEEKEERLEELKKKLKELEKRL-EELEERHELYEEAKAKKEELERLKKRLTGL---TPEK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1819 LNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKIL----------REKDGIDQEN--DELRRQIKRLSSGL 1886
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgRELTEEHRKEllEEYTAELKRIEKEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1887 qsKTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEGEAHGLAK 1966
Cdd:PRK03918 469 --KEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1967 QLNTLKELfakaDKEKLTLQKKLKTTGMTVDQVLGVRALESEKELEELKKKNLDLENdiLYMRTQQALPRDSVVEDLHLQ 2046
Cdd:PRK03918 547 ELEKLEEL----KKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEP--FYNEYLELKDAEKELEREEKE 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2047 NKYLQEKLHTLEKKLSK-EKYSQSLTSEIESDDHCQKEQE---LQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLK 2122
Cdd:PRK03918 621 LKKLEEELDKAFEELAEtEKRLEELRKELEELEKKYSEEEyeeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
490
....*....|....
gi 568967308 2123 EMCEFLKKGKLELE 2136
Cdd:PRK03918 701 EELEEREKAKKELE 714
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-422 |
4.09e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 16 DDLPRQEELadKLLISLSKVEVNELKNEDQENMIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLE 95
Cdd:PTZ00121 1549 DELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 96 NELEMaqqsaggrdtrflRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIID 175
Cdd:PTZ00121 1627 KAEEE-------------KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 176 YQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKiEVQNQEMRKNLEESVQEMEKMTDEYNRMKA 255
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED-KKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 256 LVHQSDAVMDQ-IKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEYQQMlqsLRGKLKNA 334
Cdd:PTZ00121 1773 IRKEKEAVIEEeLDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM---QLEEADAF 1849
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 335 QLDADKSNIMALKQGIQERDSQIKmlTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNfYQQTHYMKIHSKVQILEEKT 414
Cdd:PTZ00121 1850 EKHKFNKNNENGEDGNKEADFNKE--KDLKEDDEEEIEEADEIEKIDKDDIEREIPNNN-MAGKNNDIIDDKLDKDEYIK 1926
|
....*...
gi 568967308 415 KEAERIAE 422
Cdd:PTZ00121 1927 RDAEETRE 1934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
988-1297 |
4.20e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 4.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 988 ELANKQYNELTTKYRDILQKdnmLVQRTSNLEHLECENASLKEQMEAISKELEITKEKLHTIEQAWEQEtklgndsnmdK 1067
Cdd:COG1196 221 ELKELEAELLLLKLRELEAE---LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----------Q 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1068 AKKSMTNSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFTELTKINLDAQKVEQMLRDEL 1147
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1148 ADSVTKAVS-----DADRQRILELEKSEVELKVEVSKL-REISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDE 1221
Cdd:COG1196 368 LEAEAELAEaeeelEELAEELLEALRAAAELAAQLEELeEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568967308 1222 KALIAKLHQHVVSLQISEATALGKLESVTSKLQKMEAYNLRLEQKLDEKEQALyyARLEGRNRAKHLRQTIQSLRR 1297
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGVKAALLLAGLRG 521
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
78-233 |
4.59e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 4.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 78 EEQAKFENQLKTKVMKLENELEMAQQSAGGRDTRF--LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEA 155
Cdd:TIGR02169 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFaeTRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL 425
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568967308 156 ENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMR 233
Cdd:TIGR02169 426 NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1781-1982 |
4.70e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1781 TAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNK 1860
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1861 ILRE--KDGIDQ-------ENDELRRQIKRLSSglqSKTLIDNKQSLIDELQKKVKKLE---SQLERKVDDVDIKPVKEK 1928
Cdd:COG3883 91 RARAlyRSGGSVsyldvllGSESFSDFLDRLSA---LSKIADADADLLEELKADKAELEakkAELEAKLAELEALKAELE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568967308 1929 SSKEELIRWEEGKkwQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEK 1982
Cdd:COG3883 168 AAKAELEAQQAEQ--EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAA 219
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1609-1881 |
9.72e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 9.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1609 LHHKLEQQADNSLNKFRQTaqdllkQSPAPVPTNKHFIRlAEM--EQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELk 1686
Cdd:COG4913 182 LRRRLGIGSEKALRLLHKT------QSFKPIGDLDDFVR-EYMleEPDTFEAADALVEHFDDLERAHEALEDAREQIEL- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1687 vrefentkLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANSRAptttmrnLVDRLKSQLALKEKQQ 1766
Cdd:COG4913 254 --------LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRA-------ELARLEAELERLEARL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1767 KALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQI-----------EDLNENLLKLKEALKTSKN 1835
Cdd:COG4913 319 DALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLaalglplpasaEEFAALRAEAAALLEALEE 398
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 568967308 1836 KENSLADDLNELNNELQKKQKAYNKILREKDG-------IDQENDELRRQIKR 1881
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASlerrksnIPARLLALRDALAE 451
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
113-281 |
1.02e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 113 LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESL----- 187
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELaellr 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 188 -LSRRGEDSDYRSQLSKKN-------YELVQYL-----DEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMK 254
Cdd:COG4942 112 aLYRLGRQPPLALLLSPEDfldavrrLQYLKYLaparrEQAEELRADLAELAALRAELEAERAELEALLAELEEERAALE 191
|
170 180
....*....|....*....|....*..
gi 568967308 255 ALVHQSDAVMDQIKKENEHYRLQVREL 281
Cdd:COG4942 192 ALKAERQKLLARLEKELAELAAELAEL 218
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1375-1914 |
1.12e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1375 KIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERqmawdQREVELERQLDIFDHQQNEIL 1454
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA-----EEYIKLSEFYEEYLDELREIE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1455 SAAQKFEDstgsmpdpslpLPNQLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQnILSRDKVINELRLRL 1534
Cdd:PRK03918 314 KRLSRLEE-----------EINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE-AKAKKEELERLKKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1535 pATADREKLIAELERKElepKSHHTMKIAHQTIANMQARLNHKEEVLKKYQHLLEKAREE----QREIVKKHEEDLhvlh 1610
Cdd:PRK03918 382 -TGLTPEKLEKELEELE---KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcGRELTEEHRKEL---- 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1611 hkleqqadnslnkfrqtaqdllkqspapvpTNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELK--VR 1688
Cdd:PRK03918 454 ------------------------------LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKelAE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1689 EFENTKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANSRAPTttmrnlvdrLKSQLALKEKQQKA 1768
Cdd:PRK03918 504 QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE---------LEKKLDELEEELAE 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1769 LSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVverhtrelKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELN 1848
Cdd:PRK03918 575 LLKELEELGFESVEELEERLKELEPFYNEYLELKDA--------EKELEREEKELKKLEEELDKAFEELAETEKRLEELR 646
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568967308 1849 NELQKKQKAYNKilREKDGIDQENDELRRQIKRLSSGLQSktlidnKQSLIDELQKKVKKLESQLE 1914
Cdd:PRK03918 647 KELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEE------LEKRREEIKKTLEKLKEELE 704
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1477-1987 |
1.15e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1477 QLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELE--- 1553
Cdd:PRK03918 218 ELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyik 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1554 -PKSHHTMKIAHQTIANMQARLNHKEEVLKKYQHLLEKAREEQREIVKKHEEDLHVL-----HHKLEQQADNSLNKFRQT 1627
Cdd:PRK03918 298 lSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLeeleeRHELYEEAKAKKEELERL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1628 AQDLLKQSPAPVPTNKHFIRLAEME-----QTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREF-ENTKLRLQETH 1701
Cdd:PRK03918 378 KKRLTGLTPEKLEKELEELEKAKEEieeeiSKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELtEEHRKELLEEY 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1702 ASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEansrapTTTMRNLVDRLKSQlalkEKQQKALSRALLELRSEMT 1781
Cdd:PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE------LIKLKELAEQLKEL----EEKLKKYNLEELEKKAEEY 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1782 AAAEERIIAVTSQKEanlNVQQVVERhTRELKSQIEDLNENLLKLKEALKTSKNKENSLA-DDLNELNNELQKKQKAYNK 1860
Cdd:PRK03918 528 EKLKEKLIKLKGEIK---SLKKELEK-LEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNE 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1861 ILREKDGidqeNDELRRQIKRLSSglqSKTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRWEeg 1940
Cdd:PRK03918 604 YLELKDA----EKELEREEKELKK---LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRE-- 674
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568967308 1941 kkwqtkVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQK 1987
Cdd:PRK03918 675 ------LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1167-1992 |
1.17e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1167 EKSEVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKALIAKLHQHVVSL-QISEATALGK 1245
Cdd:PTZ00121 1031 ELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKaEEAKKTETGK 1110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1246 LESVTSKLQKM----EAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRQFSGALPLAQQEKFSKTMIQLQND 1321
Cdd:PTZ00121 1111 AEEARKAEEAKkkaeDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKA 1190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1322 KLKIMQEMKNSQQEHRNMENKTLELELKLKGLEELISTLKDARGAQKvinwhvKIEELRLQELKLNRELVKGKEEIKYLN 1401
Cdd:PTZ00121 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK------DAEEAKKAEEERNNEEIRKFEEARMAH 1264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1402 niISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELERQLDifdhqqneilSAAQKFEDStgsmpdpslplpNQLEIA 1481
Cdd:PTZ00121 1265 --FARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD----------EAKKKAEEA------------KKADEA 1320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1482 LRKIKENIQvilKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELEPKSHHTMK 1561
Cdd:PTZ00121 1321 KKKAEEAKK---KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1562 IAHQTIANMQARLNHKEEVLKKYQHLLEKAREEQR--EIVKKHEEdlhvlhhkleqqadnslnkfRQTAQDLLKQSPAPv 1639
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadEAKKKAEE--------------------AKKADEAKKKAEEA- 1456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1640 ptnkhfiRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKV--KAEVEDLRH 1717
Cdd:PTZ00121 1457 -------KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAeeAKKADEAKK 1529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1718 AlAQAHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRAllelrSEMTAAAEERIIAVTSQKEA 1797
Cdd:PTZ00121 1530 A-EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA-----EEAKKAEEARIEEVMKLYEE 1603
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1798 NLNVQQVVERHTRELKSQIEDLNE--------NLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKilREKDGID 1869
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKaeeekkkvEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK--KKAEEAK 1681
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1870 QENDELRRQIKRLSSGLQSKTLIDNKQSLIDELQKK---VKKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKwqtK 1946
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaeeLKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK---K 1758
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 568967308 1947 VEGLRnRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTT 1992
Cdd:PTZ00121 1759 IAHLK-KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
113-291 |
1.32e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 113 LRDEIRQLEKQLEQKDRELEDMEKELDkekKVNEQLalrnEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESL----- 187
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELE---ELNEEY----NELQAELEALQAEIDKLQAEIAEAEAEIEERREELgerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 188 -LSRRGEDSDYRSQL--SKKNYELVQYLDEIQTLTEANEKI-------EVQNQEMRKNLEESVQEMEKMTDEYNRMK--- 254
Cdd:COG3883 94 aLYRSGGSVSYLDVLlgSESFSDFLDRLSALSKIADADADLleelkadKAELEAKKAELEAKLAELEALKAELEAAKael 173
|
170 180 190
....*....|....*....|....*....|....*...
gi 568967308 255 -ALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEE 291
Cdd:COG3883 174 eAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2059-2481 |
2.14e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2059 KKLSKEKYSQSLTSEIESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKlELERK 2138
Cdd:PTZ00121 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD-EAKKK 1426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2139 LGQVRGAGRSGKTIPELEKTIGLMKKVVEKVQRENEQlKKASGILTSEKMATIEEENRNL-----KAELEKLKAHFGRQL 2213
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK-KKAEEAKKADEAKKKAEEAKKAdeakkKAEEAKKKADEAKKA 1505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2214 S---------MQFESKNKGTEKIVAENERLRKELKK--EIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQ 2282
Cdd:PTZ00121 1506 AeakkkadeaKKAEEAKKADEAKKAEEAKKADEAKKaeEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2283 LEGADSKSWKSIVVSRVYETKMK-------ELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILK-NVPE 2354
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKaeeakkaEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKiKAAE 1665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2355 GAETEQELIRELQLLRLANNQMDKERAELIHQIEINKD----QTRADSSIPDSDQLK--EKINDLETQLRKLELEKQHSK 2428
Cdd:PTZ00121 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaeelKKKEAEEKKKAEELKkaEEENKIKAEEAKKEAEEDKKK 1745
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 568967308 2429 EEVKKLKKELENFDPSFFEEIEDLKYNYKEEvkKNILLEEKLKKLSEQFGFEL 2481
Cdd:PTZ00121 1746 AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE--KEAVIEEELDEEDEKRRMEV 1796
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-376 |
2.19e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 149 ALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQ 228
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 229 NQEMRKNLEESVQEMEKMtDEYNRMKALVHQSD------------AVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVM 296
Cdd:COG4942 99 LEAQKEELAELLRALYRL-GRQPPLALLLSPEDfldavrrlqylkYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 297 MAVNAKVEEWKLILSSKDdeiiEYQQMLQSLrgklkNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTF 376
Cdd:COG4942 178 ALLAELEEERAALEALKA----ERQKLLARL-----EKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
30-493 |
2.88e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 30 ISLSKVEVNELKNEDQENMIHLFRITQSLMKMKAQEVELALEEvekagEEQAKFENQLKTKVMKLENELEMAQQSAGGRD 109
Cdd:TIGR04523 234 IEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL-----EQNNKKIKELEKQLNQLKSEISDLNNQKEQDW 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 110 TRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLS 189
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKN 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 190 RRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKK 269
Cdd:TIGR04523 389 LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLET 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 270 ENEHYRLQVRELTDLLKAKDEEDdpvmmavnakveewklilsskddeiieyqqmlqslrgKLKNAQLDADKSNIMALKQG 349
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKEL-------------------------------------KSKEKELKKLNEEKKELEEK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 350 IQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQ-QTHYMKIHSKVQILEEKTKEAERIAELAEADA 428
Cdd:TIGR04523 512 VKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENlEKEIDEKNKEIEELKQTQKSLKKKQEEKQELI 591
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568967308 429 REKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDE 493
Cdd:TIGR04523 592 DQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
79-582 |
3.15e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 79 EQAKFENQLKTKVMKLENELEMAQQSAGGrdtrfLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENE 158
Cdd:PTZ00121 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADA-----AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 159 NSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEvqnqEMRKNLEE 238
Cdd:PTZ00121 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD----EAKKKAEE 1455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 239 S--VQEMEKMTDEYNRMKALVHQSDAV--MDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLILSSKD 314
Cdd:PTZ00121 1456 AkkAEEAKKKAEEAKKADEAKKKAEEAkkADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 315 DEiieyqqmlqslrgKLKNAQldaDKSNIMALKQGIQERDSQIKmltEQVEQYTKEMEKNTFIIEdlKNELQKDKGTSNF 394
Cdd:PTZ00121 1536 AD-------------EAKKAE---EKKKADELKKAEELKKAEEK---KKAEEAKKAEEDKNMALR--KAEEAKKAEEARI 1594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 395 YQQTHYMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEME 474
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 475 VLTKEINKLEmkiNDILDENEALRERAGlEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMA 554
Cdd:PTZ00121 1675 KKAEEAKKAE---EDEKKAAEALKKEAE-EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
490 500
....*....|....*....|....*...
gi 568967308 555 QERGKRNAASGLTIDDLNLSETFSHENK 582
Cdd:PTZ00121 1751 KDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1846-2434 |
4.62e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 4.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1846 ELNNELQKKQKAYnkILREKDGIDQENDELRRQIKRLssglqsKTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKPV 1925
Cdd:COG1196 217 ELKEELKELEAEL--LLLKLRELEAELEELEAELEEL------EAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1926 KEKSSKEELIRWEEGKK-WQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTTGMTVDQVLGVRA 2004
Cdd:COG1196 289 EEYELLAELARLEQDIArLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2005 LESEKELEELKKKNLDLENDILYMRTQQALpRDSVVEDLHLQNKYLQEKLHTLEKKLSKEKysQSLTSEIESDDHCQKEQ 2084
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEE--ALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2085 ELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRGAGRSGKTIPELEKTIGLMKK 2164
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2165 VVEKVQRENEQLKKASGILTSEKMATIEEENRNLKAELEKLKAhfgrqlsmqfesKNKGTEKIVAENERLRKELKKEIEA 2244
Cdd:COG1196 526 VAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA------------AKAGRATFLPLDKIRARAALAAALA 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2245 SEKLRIAKNNLELvndkmAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYETKMKELESDIAKKNQSITDLKQL 2324
Cdd:COG1196 594 RGAIGAAVDLVAS-----DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2325 VREATEREQKAKKytEDLEQQIEilknvpEGAETEQELIRELQLLRLANNQMDKERAELIHQIEINKDQTRADSSIPDSD 2404
Cdd:COG1196 669 ELLAALLEAEAEL--EELAERLA------EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
570 580 590
....*....|....*....|....*....|
gi 568967308 2405 QLKEKINDLETQLRKLELEKqhSKEEVKKL 2434
Cdd:COG1196 741 LLEEEELLEEEALEELPEPP--DLEELERE 768
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1495-2308 |
5.40e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 5.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1495 TQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELEPkSHHTMKIAHQTIANMQARL 1574
Cdd:TIGR00606 236 SREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKV-FQGTDEQLNDLYHNHQRTV 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1575 NHKEEVLKKYQHLLEKAREEQREIVKKHEEdLHVLHHKLEQQADNSLNKFRqtAQDLLKQSPAPVP-------------- 1640
Cdd:TIGR00606 315 REKERELVDCQRELEKLNKERRLLNQEKTE-LLVEQGRLQLQADRHQEHIR--ARDSLIQSLATRLeldgfergpfserq 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1641 -TNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLqETHASEVKKVKAEVEDLRHAL 1719
Cdd:TIGR00606 392 iKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEIL-EKKQEELKFVIKELQQLEGSS 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1720 AQAHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAvTSQKEANL 1799
Cdd:TIGR00606 471 DRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT-KDKMDKDE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1800 NVQQVVERHTRELKSQIEDLnENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKD------------- 1866
Cdd:TIGR00606 550 QIRKIKSRHSDELTSLLGYF-PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELEskeeqlssyedkl 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1867 ----GIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDE--------------LQKKVKKLESQLERKVDDVDIK----P 1924
Cdd:TIGR00606 629 fdvcGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQfitqltdenqsccpVCQRVFQTEAELQEFISDLQSKlrlaP 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1925 VKEKSSKEELIRWE-EGKKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKaDKEKLTLQKKLKTTGMTVDQVLGVr 2003
Cdd:TIGR00606 709 DKLKSTESELKKKEkRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR-LKNDIEEQETLLGTIMPEEESAKV- 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2004 ALESEKELEELKKKNLDLENDIlymrTQQALPRDSVVEDLHLQ--NKYLQEKLHTLEKKLSKEKYSQSLtseieSDDHCQ 2081
Cdd:TIGR00606 787 CLTDVTIMERFQMELKDVERKI----AQQAAKLQGSDLDRTVQqvNQEKQEKQHELDTVVSKIELNRKL-----IQDQQE 857
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2082 KEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLE-----------LERKLGQVRGAGRSGK 2150
Cdd:TIGR00606 858 QIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQdspletflekdQQEKEELISSKETSNK 937
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2151 TI--------PELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEE-------NRNLKAELEKLKAHFGRQLSM 2215
Cdd:TIGR00606 938 KAqdkvndikEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECekhqekiNEDMRLMRQDIDTQKIQERWL 1017
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2216 QFESKNKGTEKIVAENERLRKELKKEI-------------EASEKLRIAKNNLELVNDKMAAQLEEtgKRLQFAESRAPQ 2282
Cdd:TIGR00606 1018 QDNLTLRKRENELKEVEEELKQHLKEMgqmqvlqmkqehqKLEENIDLIKRNHVLALGRQKGYEKE--IKHFKKELREPQ 1095
|
890 900
....*....|....*....|....*.
gi 568967308 2283 LEGADSKSWKSIVVSRVYETKMKELE 2308
Cdd:TIGR00606 1096 FRDAEEKYREMMIVMRTTELVNKDLD 1121
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2233-2478 |
5.67e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 5.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2233 RLRKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYETKMKELESDIA 2312
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2313 KKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKNVPEGAETEQELIRELQLLRLANNQMDKERAELIHQI----- 2387
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIngiee 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2388 ---EINKDQTRADSSIPDSDQLKEKINDLETQLRKLELEKQHSKEEVKKLKKELEnfdpsffEEIEDLKYNYKEEVKKNI 2464
Cdd:PRK03918 329 rikELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG-------LTPEKLEKELEELEKAKE 401
|
250
....*....|....
gi 568967308 2465 LLEEKLKKLSEQFG 2478
Cdd:PRK03918 402 EIEEEISKITARIG 415
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
113-894 |
7.06e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 7.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 113 LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRG 192
Cdd:pfam02463 192 LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 193 EDSDYRSQLSK-KNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKEN 271
Cdd:pfam02463 272 KENKEEEKEKKlQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 272 EHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEwklilSSKDDEIIEYQQMLQSLRGKLKNAQLDADKSNIMALKQGIQ 351
Cdd:pfam02463 352 EAEEEEEEELEKLQEKLEQLEEELLAKKKLESER-----LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 352 ERDSQIKMLTEqveqyTKEMEKNTFIIEDLKNELQKDKGTSNFYQQTHYMKIHSKVQILEEKTKEAERIAELAEADAREK 431
Cdd:pfam02463 427 EELEILEEEEE-----SIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQK 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 432 DKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKIndILDENEALRERAGLEPKTMIDL 511
Cdd:pfam02463 502 ESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATA--DEVEERQKLVRALTELPLGARK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 512 TEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGK--RNAASGLTIDDLNLSETFSHENKIEGRKLN 589
Cdd:pfam02463 580 LRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGilKDTELTKLKESAKAKESGLRKGVSLEEGLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 590 FMSLNNMNETQSKNETIVQDLPIQEEQSRNAELELdHQRSQAEQNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEEN 669
Cdd:pfam02463 660 EKSEVKASLSELTKELLEIQELQEKAESELAKEEI-LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEEL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 670 KQLEEGMKEILQAIKDMPKDSDVKGGETSLIIPSLERLVNAMESKNAEGIFDASLH-LKAQVDQLTGRNEELRQELRQSR 748
Cdd:pfam02463 739 KLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEkLKAQEEELRALEEELKEEAELLE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 749 KEAVNYSQQLVKANLKIDHLEKETDLLRQSAGSNVVYKGIDLpdgiAPSSAYIINSQNEYLIHLLQELDNKEKKLKHLED 828
Cdd:pfam02463 819 EEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE----EEITKEELLQELLLKEEELEEQKLKDELESKEEK 894
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568967308 829 SLEDYNRKFAVIRHQQSLLYKEYLSEKDIWKTDSEMIREEKRKLEDQAEQDAVKVKEYNNLLSALQ 894
Cdd:pfam02463 895 EKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEE 960
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1851-2422 |
7.19e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 7.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1851 LQKKQKAYNKILREKDGIDQENDELRRQIKRLSsglQSKTLIDNKQSLIDELQKKVKKLESQLERKVDDVD--------- 1921
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTE---NIEELIKEKEKELEEVLREINEISSELPELREELEklekevkel 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1922 --IKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELfaKADKEKLTLQKKLKTTGMTVDQV 1999
Cdd:PRK03918 234 eeLKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL--KEKAEEYIKLSEFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2000 LGVRALESEKELEELKKKNLDLENDilymrtqqalprDSVVEDLHLQNKYLQEKLHTLEKKLSKEKYSQSLTSEIE---S 2076
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERIKELEEK------------EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELErlkK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2077 DDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELE---RKLGQVRGAGRSGKTIP 2153
Cdd:PRK03918 380 RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgRELTEEHRKELLEEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2154 ELEKTIGLMKKVVEKVQRENEQLKKASGILTSE----KMATIEEENRNLKAELEKLKAHFGRQLSMQFESKNKGTEKIVA 2229
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKEseliKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2230 ENERLRKELKKEIEASEKLRIAKNNLELVNDKMAA---QLEETG-KRLQFAESRAPQLEGADSKSwksivvsrvyeTKMK 2305
Cdd:PRK03918 540 EIKSLKKELEKLEELKKKLAELEKKLDELEEELAEllkELEELGfESVEELEERLKELEPFYNEY-----------LELK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2306 ELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKNvpEGAETEQELIRELQLlrlannQMDKERAELIH 2385
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEYEELREEYL------ELSRELAGLRA 680
|
570 580 590
....*....|....*....|....*....|....*..
gi 568967308 2386 QIEINKDqtRADSSIPDSDQLKEKINDLETQLRKLEL 2422
Cdd:PRK03918 681 ELEELEK--RREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
223-500 |
9.08e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 9.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 223 EKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDdpvMMAVNAK 302
Cdd:TIGR02169 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE---QLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 303 VEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDADKSnimalkqgiqerDSQIKMLTEQVEQYTKEMEKNTFIIEDLK 382
Cdd:TIGR02169 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL------------LAEIEELEREIEEERKRRDKLTEEYAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 383 NElqkdkgtsnfyqqthYMKIHSKVQILEEKTKEA-ERIAELAEA--DAREKDKELVEALKRLKDYESGVYG-LEDAVIE 458
Cdd:TIGR02169 364 EE---------------LEDLRAELEEVDKEFAETrDELKDYREKleKLKREINELKRELDRLQEELQRLSEeLADLNAA 428
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568967308 459 IKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRER 500
Cdd:TIGR02169 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
108-679 |
9.60e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 9.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 108 RDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESL 187
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 188 LSRRGEDSDYRSQLSKKNYEL---VQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVM 264
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 265 DQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAV----NAKVEEWKLILSSKDDEIIEYQQMLQSlrgklknaQLDADK 340
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEIsdlnNQKEQDWNKELKSELKNQEKKLEEIQN--------QISQNN 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 341 SNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNfyqqthymKIHSKVQILEEKTKEAERI 420
Cdd:TIGR04523 335 KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIK--------NLESQINDLESKIQNQEKL 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 421 AELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINK----LEMKINDILDENEA 496
Cdd:TIGR04523 407 NQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETqlkvLSRSINKIKQNLEQ 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 497 LRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNaaSGLTIDDLNlSET 576
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDD--FELKKENLE-KEI 563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 577 FSHENKIEGRKLNFMSLnnmnetQSKNETIVQDLPIQEEQSRNAELELDHQRSQAEQnefLSRELAEKEKDLERSRTVIA 656
Cdd:TIGR04523 564 DEKNKEIEELKQTQKSL------KKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISS---LEKELEKAKKENEKLSSIIK 634
|
570 580
....*....|....*....|...
gi 568967308 657 KFQSKLKELVEENKQLEEGMKEI 679
Cdd:TIGR04523 635 NIKSKKNKLKQEVKQIKETIKEI 657
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
119-875 |
1.16e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 119 QLEKQLEQKDRELEDMEKELDKEkkvneqlalrNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYR 198
Cdd:pfam15921 75 HIERVLEEYSHQVKDLQRRLNES----------NELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLR 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 199 SQLSKKNYEL--VQYLDEiQTLTEANEKIEvQNQEMRKNLEESVQEMEKMtdeynrmkaLVHQSDAVMDQIKKENEHYRL 276
Cdd:pfam15921 145 NQLQNTVHELeaAKCLKE-DMLEDSNTQIE-QLRKMMLSHEGVLQEIRSI---------LVDFEEASGKKIYEHDSMSTM 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 277 QVRELTDllkakdeeddpvmmAVNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDADKSNIMALKQGIQERDSQ 356
Cdd:pfam15921 214 HFRSLGS--------------AISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVE 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 357 IKMLTEQVEQYTKEMEKntfiIEDLKNELQKDKGTSNFYQQTHYMKIHSKVQILEEKTKEAERiaeLAEADAREKDKELV 436
Cdd:pfam15921 280 ITGLTEKASSARSQANS----IQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKR---MYEDKIEELEKQLV 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 437 EALKRLKdyesgvygleDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDLTEFRN 516
Cdd:pfam15921 353 LANSELT----------EARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELD 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 517 SKRLKQQQYRAenqvLLKEIESLEEERLDlkrkiRQMAQERGKRNAASGLTIDDLNLSETFSHENK-IEGRKLNFMSLNN 595
Cdd:pfam15921 423 DRNMEVQRLEA----LLKAMKSECQGQME-----RQMAAIQGKNESLEKVSSLTAQLESTKEMLRKvVEELTAKKMTLES 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 596 MNETQSKNETIVQ--------------------DLPIQEEQsrNAELELDHQRSQAEQNEFLSRELAEKEKDLERSRTVI 655
Cdd:pfam15921 494 SERTVSDLTASLQekeraieatnaeitklrsrvDLKLQELQ--HLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQI 571
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 656 AKFQSKLKE-------LVEENKQLEEGMKEILQAIKDMPKDSDVKGGEtsliIPSLERLVNAMESKNAEGIFDASLHLKA 728
Cdd:pfam15921 572 ENMTQLVGQhgrtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAK----IRELEARVSDLELEKVKLVNAGSERLRA 647
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 729 qVDQLTGRNEELRQELRQSRKEAVNYSQ--QLVKANL--KIDHLEKETDLLR---QSAGSNV-----VYKGIDLPDGIAP 796
Cdd:pfam15921 648 -VKDIKQERDQLLNEVKTSRNELNSLSEdyEVLKRNFrnKSEEMETTTNKLKmqlKSAQSELeqtrnTLKSMEGSDGHAM 726
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 797 SSAYIINSQneyLIHLLQELDNKEKKLKHLEDSLEDYNRKFAVIRHQQSLLYKEY---LSEKDIWKTDSEMIREEKRKLE 873
Cdd:pfam15921 727 KVAMGMQKQ---ITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELstvATEKNKMAGELEVLRSQERRLK 803
|
..
gi 568967308 874 DQ 875
Cdd:pfam15921 804 EK 805
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1748-2412 |
1.43e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1748 MRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEEriIAVTSQKEANLNVQQVVErhtrelKSQIEDLNENLLKLK 1827
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNK--IKILEQQIKDLNDKLKKN------KDKINKLNSDLSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1828 EALKTSKNKENSLADDLNELNNELQKKQKAYNKIL----REKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDELQ 1903
Cdd:TIGR04523 110 SEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLteikKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1904 KKVKKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTK-VEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEK 1982
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDnIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1983 LTLQKKLKTTGMTVDQvlgvralesekeleeLKKKNLDLENDILYMRTQQAlprDSVVEDLHLQNKYLQEKLHTLEKKLS 2062
Cdd:TIGR04523 270 SEKQKELEQNNKKIKE---------------LEKQLNQLKSEISDLNNQKE---QDWNKELKSELKNQEKKLEEIQNQIS 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2063 K-EKYSQSLTSEIESddhcqkeqeLQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQ 2141
Cdd:TIGR04523 332 QnNKIISQLNEQISQ---------LKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2142 VRgagrsgKTIPELEKTIGLMKKVVEKVQRENEQLkKASGILTSEKMATIEEENRNLKAELEKLKAhFGRQLSMQFESKN 2221
Cdd:TIGR04523 403 QE------KLNQQKDEQIKKLQQEKELLEKEIERL-KETIIKNNSEIKDLTNQDSVKELIIKNLDN-TRESLETQLKVLS 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2222 KGTEKIVAENERLRKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEgADSKSWKSIVVSRVYE 2301
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKE-SKISDLEDELNKDDFE 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2302 TKMKELESDIAKKNQSITDLKQ----LVREATEREQKAKKYTED-------LEQQIEILKNVPEGAETEQELIRELQLLR 2370
Cdd:TIGR04523 554 LKKENLEKEIDEKNKEIEELKQtqksLKKKQEEKQELIDQKEKEkkdlikeIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 568967308 2371 LANNQMDKERAELIHQIEINKDQTRADSSIPDSD--QLKEKIND 2412
Cdd:TIGR04523 634 KNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKikESKTKIDD 677
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
814-1398 |
1.44e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 814 QELDNKEKKLKHLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKDIWKTDSEMIREEKRKLED--QAEQDAVKVKEYNNLLS 891
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEakKKAEEAKKADEAKKKAE 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 892 ALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEMER--HLRKENGKHRNDVIAMEAEVTEKLGSLQRFKEMAIF 969
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 970 KIAALQKVidnsvslselELANKQYNELTTKYRDILQKDnmlvqrtsnlehlecenaSLKEQMEAISKELEItKEKLHTI 1049
Cdd:PTZ00121 1406 KADELKKA----------AAAKKKADEAKKKAEEKKKAD------------------EAKKKAEEAKKADEA-KKKAEEA 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1050 EQAWEQETKLGNDSNMDKAKKSMTNSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSlkqmEERNFELETKFTEL 1129
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA----EEAKKADEAKKAEE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1130 TKINLDAQKVEQMLRdelADSVTKAVsdadrqrilELEKSEVELKVE-VSKLREISDIAKRQVDFLNSQQQSREKEVESL 1208
Cdd:PTZ00121 1533 AKKADEAKKAEEKKK---ADELKKAE---------ELKKAEEKKKAEeAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1209 RTQLLDFQAQSDEKALIAKLHQHVVSLQISEATALGKLESVTSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHL 1288
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1289 RQTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRnmeNKTLELELKLKGLEELISTLKDARGAQK 1368
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK---IKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
|
570 580 590
....*....|....*....|....*....|
gi 568967308 1369 VINWHVKIEELRLQELKLNRELVKgKEEIK 1398
Cdd:PTZ00121 1758 KIAHLKKEEEKKAEEIRKEKEAVI-EEELD 1786
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
130-173 |
1.59e-03 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 43.28 E-value: 1.59e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 568967308 130 ELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDI 173
Cdd:PRK03992 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSEL 45
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1482-2248 |
1.65e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1482 LRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELEPKSHHTMK 1561
Cdd:pfam02463 271 LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1562 IAHQTIANMQARLNHKEEVLKKYQHLLEKAREEQREIVKKHEEDLHVLHHKLEQQADNSLNKFRQTAQDLLKqspapvpt 1641
Cdd:pfam02463 351 REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLK-------- 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1642 nkhfIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKVKAEvEDLRHALAQ 1721
Cdd:pfam02463 423 ----EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLEL-LLSRQKLEE 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1722 AHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNV 1801
Cdd:pfam02463 498 RSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1802 QQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKR 1881
Cdd:pfam02463 578 RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1882 LSSGLQSKTLIDNKQSLIDELQKKVKKLESQLERKVddvdIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEGEA 1961
Cdd:pfam02463 658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEE----ILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDK 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1962 HGLAKQLNTLKELFAKADKEKLTLQKKLKTTGMTVDQVLGVRALESEKELEELKKKNLDLENDILYMRTQQALPRDSVVE 2041
Cdd:pfam02463 734 INEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEE 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2042 DLHLQNKYLQEKLHTLEKKLSKEKYSQSLTSEIESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDL 2121
Cdd:pfam02463 814 AELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEE 893
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 2122 KEmcEFLKKGKLELERKLGQVRgagrsgKTIPELEKTIGLMKKVVEKVQRENEQLKKAsGILTSEKMATIEEENRNLKAE 2201
Cdd:pfam02463 894 KE--KEEKKELEEESQKLNLLE------EKENEIEERIKEEAEILLKYEEEPEELLLE-EADEKEKEENNKEEEEERNKR 964
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 568967308 2202 LEKLKAHFGRQLSM---QFESKNKGTEKIVAENERLRKELKKEIEASEKL 2248
Cdd:pfam02463 965 LLLAKEELGKVNLMaieEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
85-689 |
1.77e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 85 NQLKTKVMKLENELEMAQqsaggRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRR 164
Cdd:TIGR02169 290 LRVKEKIGELEAEIASLE-----RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 165 ENEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEME 244
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 245 KMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWK------LILSSKDDEII 318
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRggraveEVLKASIQGVH 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 319 -----------EYQQMLQSLRG-KLKNAQLDAD---KSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKN 383
Cdd:TIGR02169 525 gtvaqlgsvgeRYATAIEVAAGnRLNNVVVEDDavaKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVD 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 384 ELQKDKGtsnfYQQTHYMKIHSKVqiLEEKTKEAERIAELA-----EADAREKDKELVEALKRLKDYESGVYGLEDAVIE 458
Cdd:TIGR02169 605 LVEFDPK----YEPAFKYVFGDTL--VVEDIEAARRLMGKYrmvtlEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQR 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 459 IKnckAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIES 538
Cdd:TIGR02169 679 LR---ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 539 LEEERLDLKRKIRQMAQERGKRNAAsgltIDDLNLSETFSHENKIEGrklnfmSLNNMNETQSKNETIVQDLPiQEEQSR 618
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEA----LNDLEARLSHSRIPEIQA------ELSKLEEEVSRIEARLREIE-QKLNRL 824
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568967308 619 NAELELDHQRSQAEQNEFLSREL--AEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKD 689
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEqiKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
52-252 |
1.94e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 43.48 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 52 FRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQ-----LKTKVMKLENELEMAQQsaggrDTRFLRDEIRQLEKQLEQ 126
Cdd:pfam05667 300 FTHTEKLQFTNEAPAATSSPPTKVETEEELQQQREeeleeLQEQLEDLESSIQELEK-----EIKKLESSIKQVEEELEE 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 127 KDRELEDMEKELDKEKKVNEQLalrnEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSrrgEDSDYRSQLSKKNY 206
Cdd:pfam05667 375 LKEQNEELEKQYKVKKKTLDLL----PDAEENIAKLQALVDASAQRLVELAGQWEKHRVPLIE---EYRALKEAKSNKED 447
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568967308 207 ELVQYLDEIQTLteaNEKIEVQNQEMRKNLEESVQ---EMEKMTDEYNR 252
Cdd:pfam05667 448 ESQRKLEEIKEL---REKIKEVAEEAKQKEELYKQlvaEYERLPKDVSR 493
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1756-1919 |
1.94e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1756 KSQLALKEKQQKALSRALLELRSEMTAAAEERIiAVTSQKEANLNVQQV---------VERHTRELKSQIEDLNENLLKL 1826
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD-ALQERREALQRLAEYswdeidvasAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1827 KEalktsknkensLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQS------------------ 1888
Cdd:COG4913 688 AA-----------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaedlarlelralleerfa 756
|
170 180 190
....*....|....*....|....*....|....*....
gi 568967308 1889 --------KTLIDNKQSLIDELQKKVKKLESQLERKVDD 1919
Cdd:COG4913 757 aalgdaveRELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1764-1993 |
2.11e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1764 KQQKALSRALLELRSEMtaAAEERIIAVTSQKEANLNVQqvverhTRELKSQIEDLNENLLKLKEALKTSKNKENSLADD 1843
Cdd:COG4942 20 DAAAEAEAELEQLQQEI--AELEKELAALKKEEKALLKQ------LAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1844 LNELNNELQKKQKAYNKILREKDGIDQEN--------DELRRQIKRLSSglqSKTLIDNKQSLIDELQKKVKKLESQLER 1915
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPplalllspEDFLDAVRRLQY---LKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568967308 1916 KVDDVDIKPVKEKSSKEELIRWEEGKKWQTK-VEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTTG 1993
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKlLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
120-491 |
2.74e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 120 LEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQ---IDSQKESLLSRRGEDSD 196
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEkelLEKEIERLKETIIKNNS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 197 YRSQLSKKNYELVQYLDEIQTLTEANEK----IEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENE 272
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNLDNTRESLETqlkvLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 273 HYRLQVRELTDL-----LKAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDADK--SNIMA 345
Cdd:TIGR04523 521 SLKEKIEKLESEkkekeSKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQkeKEKKD 600
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 346 LKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQTHYMKIHSKVQILEEKTKEAERIAELAE 425
Cdd:TIGR04523 601 LIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIE 680
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568967308 426 ADAREKDKELVEALKRLKDyESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDIL 491
Cdd:TIGR04523 681 LMKDWLKELSLHYKKYITR-MIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKFDDAF 745
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
82-191 |
2.95e-03 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 42.02 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 82 KFENQLKTKV-----MKL--------------ENELEMAQQSAGGRDTRFLRdEIRQLEKQLEQKDRELEDMEKELDKEK 142
Cdd:COG4026 77 KFFEELKGMVghverMKLplghdveyvdvelvRKEIKNAIIRAGLKSLQNIP-EYNELREELLELKEKIDEIAKEKEKLT 155
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568967308 143 KVNEQLALRNEEAENENSKLRRENEQLRQD---IIDYQKQIDSQKESLLSRR 191
Cdd:COG4026 156 KENEELESELEELREEYKKLREENSILEEEfdnIKSEYSDLKSRFEELLKKR 207
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
94-284 |
3.51e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 3.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 94 LENELEMAQQSAGGRdTRFLRDEIRQLEKQLEQKDRELEDMEKE-----LDKEKKVNEQlalRNEEAENENSKLRRENEQ 168
Cdd:COG3206 162 LEQNLELRREEARKA-LEFLEEQLPELRKELEEAEAALEEFRQKnglvdLSEEAKLLLQ---QLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 169 LRQDIIDYQKQIDSQKESL--LSRRGEDSDYRSQLSKKNYELVQ----YLDEIQTLTEANEKIEVQNQEMRKNLEESVQE 242
Cdd:COG3206 238 AEARLAALRAQLGSGPDALpeLLQSPVIQQLRAQLAELEAELAElsarYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568967308 243 MEKmtdEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDL 284
Cdd:COG3206 318 LEA---ELEALQAREASLQAQLAQLEARLAELPELEAELRRL 356
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1677-1860 |
3.94e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1677 EKQKEITELKvrefenTKLRLQETHASEVKKVKAEVEDLRHAL-------------AQAHKDSQSLKSELQAQKEANSRa 1743
Cdd:COG4913 614 ALEAELAELE------EELAEAEERLEALEAELDALQERREALqrlaeyswdeidvASAEREIAELEAELERLDASSDD- 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1744 ptttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNENL 1823
Cdd:COG4913 687 --------LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568967308 1824 LKLKEALKTSKNKENSLAD---DLNELNNELQKKQKAYNK 1860
Cdd:COG4913 759 LGDAVERELRENLEERIDAlraRLNRAEEELERAMRAFNR 798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
624-1444 |
4.04e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 624 LDHQRSQAEQNEFLSRELAEKEK-----DLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKdmpkdsdvkggETS 698
Cdd:TIGR02168 205 LERQAEKAERYKELKAELRELELallvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLE-----------ELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 699 LIIPSLERLVNAMESKNAEgifdaslhLKAQVDQLTGRNEELRQELRQSRKEAVNYSQQLVKANLKIDHLEKETDLLRQS 778
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYA--------LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 779 AGSnvvykgidlpdgiapsSAYIINSQNEYLIHLLQELDNKEKKLKHLEDSLEDYNRKFAVIRHQQSLLykeylsEKDIW 858
Cdd:TIGR02168 346 LEE----------------LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL------NNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 859 KTDSEMIREEKRKLEDQAEQDAVKVKEYNNLLSALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEMERHLRKE 938
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 939 NGKHRNDVIAMEAEVTEKLGSLQRFKE--MAIFKIAALQKVIDNSVSL-SELELA-------NKQY---NELTTKYRDI- 1004
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEGVKAllKNQSGLSGILGVLSELISVdEGYEAAieaalggRLQAvvvENLNAAKKAIa 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1005 ------LQKDNMLVQRTSNLEHLECENASLKEQME---AISKELEITKEKLHTIEQAWEQETKLGND--SNMDKAKKSMT 1073
Cdd:TIGR02168 564 flkqneLGRVTFLPLDSIKGTEIQGNDREILKNIEgflGVAKDLVKFDPKLRKALSYLLGGVLVVDDldNALELAKKLRP 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1074 NSDIVS-----------ISKKITVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFTELTKINLDAQKVEQM 1142
Cdd:TIGR02168 644 GYRIVTldgdlvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1143 LRDELADsvTKAVSDADRQRILELEKSEVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQ-SDE 1221
Cdd:TIGR02168 724 LSRQISA--LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEElKAL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1222 KALIAKLHQHVVSLQISEATALGKLESVTSKLQKMEAYNLRLEQKLDEKEQALyyarlegrNRAKHLRQTIQSLRRQFSG 1301
Cdd:TIGR02168 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI--------ESLAAEIEELEELIEELES 873
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1302 ALplaqqEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKtlelelklkgleelistLKDARGAQKVINWHVKIEELRL 1381
Cdd:TIGR02168 874 EL-----EALLNERASLEEALALLRSELEELSEELRELESK-----------------RSELRRELEELREKLAQLELRL 931
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568967308 1382 QELKLNRELVKGKeeikylnnIISEYEHTinslEEEIVQQSKFHEERQMAWDQREVELERQLD 1444
Cdd:TIGR02168 932 EGLEVRIDNLQER--------LSEEYSLT----LEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1786-1997 |
4.82e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1786 ERIIAVTSQKEANLNVQqvvERHTRELKSQIEDLNENLLKLKEALKtsknkensladdlNELNNELQKKQKAYNKILRE- 1864
Cdd:PRK00409 519 NELIASLEELERELEQK---AEEAEALLKEAEKLKEELEEKKEKLQ-------------EEEDKLLEEAEKEAQQAIKEa 582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1865 KDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDELQKKVKKL----ESQLERKV-DDVDIKPVKEKSskeELIRWEE 1939
Cdd:PRK00409 583 KKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKkkqkEKQEELKVgDEVKYLSLGQKG---EVLSIPD 659
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568967308 1940 GKKWQTKVEGLRNRLKEKEGEAHGLAKqlntlKELFAKADKEKLtlqkKLKTTGMTVD 1997
Cdd:PRK00409 660 DKEAIVQAGIMKMKVPLSDLEKIQKPK-----KKKKKKPKTVKP----KPRTVSLELD 708
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
78-183 |
4.91e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 42.35 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 78 EEQAKFEnQLKTKVMKLE---NELEMAQQSAGGRD--TRfLRDEIrqLEKQLEQKDRELEDMEKELDKEKKVNEQLALRN 152
Cdd:PRK10929 170 LAQAQLT-ALQAESAALKalvDELELAQLSANNRQelAR-LRSEL--AKKRSQQLDAYLQALRNQLNSQRQREAERALES 245
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 568967308 153 EEAENENS-----------KLRRE-----NEQL-RQDIIDY-QKQIDSQ 183
Cdd:PRK10929 246 TELLAEQSgdlpksivaqfKINRElsqalNQQAqRMDLIASqQRQAASQ 294
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1648-1897 |
4.94e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1648 LAEMEQTVAEQDDSLSSLLTKLKKVSKDLEK-QKEITELkvrefentklrlqethASEVKKVKAEVEDLRHALAQAHKDS 1726
Cdd:COG3883 4 LALAAPTPAFADPQIQAKQKELSELQAELEAaQAELDAL----------------QAELEELNEEYNELQAELEALQAEI 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1727 QSLKSELQAQKEAnsraptttMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVqqvve 1806
Cdd:COG3883 68 DKLQAEIAEAEAE--------IEERREELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADL----- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1807 rhTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGL 1886
Cdd:COG3883 135 --LEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAA 212
|
250
....*....|.
gi 568967308 1887 QSKTLIDNKQS 1897
Cdd:COG3883 213 AAAAAAAAAAA 223
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
78-750 |
5.48e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 5.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 78 EEQAKFENQLKTKVMKLENELEMAQQSAGGRDTRFLRDEIRQLEKQLEQKDRELEDmEKELDKEKKVNE----QLALRNE 153
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAED-AKRVEIARKAEDarkaEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 154 EAENENSKLR----RENEQLRQdiIDYQKQIDSQKESLLSRRGEDSdyRSQLSKKNYELVQYLDEIQTLTEANEKIEvqn 229
Cdd:PTZ00121 1174 DAKKAEAARKaeevRKAEELRK--AEDARKAEAARKAEEERKAEEA--RKAEDAKKAEAVKKAEEAKKDAEEAKKAE--- 1246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 230 qEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRL-------QVRELTDLLKAKDEEDDPVMMAVNAK 302
Cdd:PTZ00121 1247 -EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeakkaeEKKKADEAKKKAEEAKKADEAKKKAE 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 303 VEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLK 382
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 383 NELQKDKGTSNFYQQTHYMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDyesgvyglEDAVIEIKNC 462
Cdd:PTZ00121 1406 KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE--------EAKKADEAKK 1477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 463 KAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEE- 541
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEl 1557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 542 ERLDLKRKIRQMAQERGKRNAASgLTIDDLNLSEtfshENKIEGRKLNFMSLNNMNETQSKNEtivQDLPIQEEQSRNAE 621
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKAEEDKNMAL-RKAEEAKKAE----EARIEEVMKLYEEEKKMKAEEAKKA---EEAKIKAEELKKAE 1629
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 622 lELDHQRSQAEQNEFLSRELAEKEKDLERSRTVIAKFQSKLKElvEENKQLEEGMKEilQAIKDMPKDSDVKGGETSLII 701
Cdd:PTZ00121 1630 -EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE--EDKKKAEEAKKA--EEDEKKAAEALKKEAEEAKKA 1704
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 568967308 702 PSLERlVNAMESKNAEGIFDASLHLKAQVDQLTGRNEELRQELRQSRKE 750
Cdd:PTZ00121 1705 EELKK-KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
614-938 |
6.06e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 6.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 614 EEQSRNAE--LELDHQRSQAEQNEFLsRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDSD 691
Cdd:COG1196 206 ERQAEKAEryRELKEELKELEAELLL-LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 692 VKGGETSLIIPSLERLVNAMEsknaegifdaslHLKAQVDQLTGRNEELRQELRQSRKEAVNYSQQLVKANLKIDHLEKE 771
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIA------------RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 772 TDLLRQSagsnvvykgidlpdgiapssayiinsqneyLIHLLQELDNKEKKLKHLEDSLEDYNRKFAVIRHQQSLLYKEY 851
Cdd:COG1196 353 LEEAEAE------------------------------LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 852 LSEkdiwKTDSEMIREEKRKLEDQAEQDAVKVKEYNNLLSALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEM 931
Cdd:COG1196 403 EEL----EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
....*..
gi 568967308 932 ERHLRKE 938
Cdd:COG1196 479 LAELLEE 485
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
458-694 |
6.73e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 6.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 458 EIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERaglepktMIDLTEFRNSKRLKQQQYRAENQVLLKEIE 537
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR-------IAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 538 SLEEERLDLKRKIRQMAQERGKRNAASGLTIddLNLSETFSHENKiegrklNFMSLNNMNETQSKN-ETIVQDLPIQEEQ 616
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLAL--LLSPEDFLDAVR------RLQYLKYLAPARREQaEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 617 SRNAELELDHQRS----QAEQNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDSDV 692
Cdd:COG4942 166 RAELEAERAELEAllaeLEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
..
gi 568967308 693 KG 694
Cdd:COG4942 246 AG 247
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
90-556 |
8.42e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 8.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 90 KVMKLENELEMAQQSAggRDTRFLRDEIRQ----LEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRE 165
Cdd:pfam15921 343 KIEELEKQLVLANSEL--TEARTERDQFSQesgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRE 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 166 NEQLRQDIidyqkqidSQKESLLsrrgedsdyRSQLSKKNYELVQYLDEIQTLTEANEKIevqnQEMRKNLEESVQEMEK 245
Cdd:pfam15921 421 LDDRNMEV--------QRLEALL---------KAMKSECQGQMERQMAAIQGKNESLEKV----SSLTAQLESTKEMLRK 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 246 MTDEYNRMKALVHQSDavmdqikkenehyrlqvRELTDlLKAKDEEDDPVMMAVNAKVEEwkliLSSKDDEIIEYQQMLQ 325
Cdd:pfam15921 480 VVEELTAKKMTLESSE-----------------RTVSD-LTASLQEKERAIEATNAEITK----LRSRVDLKLQELQHLK 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 326 SLRGKLKNAQLDADksnimALKQGIQERDSQIKMLTEQVEQYTK---EMEKNTFIIEDLKNELQKDKGTSNFYQQthymk 402
Cdd:pfam15921 538 NEGDHLRNVQTECE-----ALKLQMAEKDKVIEILRQQIENMTQlvgQHGRTAGAMQVEKAQLEKEINDRRLELQ----- 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 403 ihsKVQILEEKTKEAERIAELAEADAREKDKELVEA-LKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEI- 480
Cdd:pfam15921 608 ---EFKILKDKKDAKIRELEARVSDLELEKVKLVNAgSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFr 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 481 ----------NKLEMKINDILDENEALRERA-------GLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEER 543
Cdd:pfam15921 685 nkseemetttNKLKMQLKSAQSELEQTRNTLksmegsdGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEK 764
|
490
....*....|...
gi 568967308 544 LDLKRKIRQMAQE 556
Cdd:pfam15921 765 HFLKEEKNKLSQE 777
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
86-189 |
8.48e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 8.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 86 QLKTKVMKLENELEmaqqsaggRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKekkvneqlalRNEEAENENSKLRRE 165
Cdd:PRK12704 61 EAKEEIHKLRNEFE--------KELRERRNELQKLEKRLLQKEENLDRKLELLEK----------REEELEKKEKELEQK 122
|
90 100
....*....|....*....|....
gi 568967308 166 NEQLRQDIIDYQKQIDSQKESLLS 189
Cdd:PRK12704 123 QQELEKKEEELEELIEEQLQELER 146
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
575-1257 |
8.49e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 8.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 575 ETFSHENKIEGRKLNfmSLNNMNETQS---KNETIVQDLPIQEEQ-SRNAELELDHQRSQAEQNefLSRELAEKEKDLER 650
Cdd:pfam15921 81 EEYSHQVKDLQRRLN--ESNELHEKQKfylRQSVIDLQTKLQEMQmERDAMADIRRRESQSQED--LRNQLQNTVHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 651 SRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDSDVKGGETsliIPSLERLVNAMESKNAEGIFDASLHLKAQV 730
Cdd:pfam15921 157 AKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK---IYEHDSMSTMHFRSLGSAISKILRELDTEI 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 731 DQLTGRNEELRQELRQSRKEAVNYSQQLVKANL-KIDHLEKE-----TDLLRQSAGSNVVYKGIDLPDGIAPSSAyiiNS 804
Cdd:pfam15921 234 SYLKGRIFPVEDQLEALKSESQNKIELLLQQHQdRIEQLISEheveiTGLTEKASSARSQANSIQSQLEIIQEQA---RN 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 805 QNEYLIHLLQELDNKEKKLK-HLEDSLEDYNRKFAVIRHQQSLLYKEyLSEKdiwKTDSEMIREEKRKLEDQ-------- 875
Cdd:pfam15921 311 QNSMYMRQLSDLESTVSQLRsELREAKRMYEDKIEELEKQLVLANSE-LTEA---RTERDQFSQESGNLDDQlqklladl 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 876 --AEQDAVKVKEYNNLLSALQMDS----NEMKKMLSENSRKITVLQVNEKSLIRQYTTlvEMERHLRKENGKhrNDVIAM 949
Cdd:pfam15921 387 hkREKELSLEKEQNKRLWDRDTGNsitiDHLRRELDDRNMEVQRLEALLKAMKSECQG--QMERQMAAIQGK--NESLEK 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 950 EAEVTEKLGSLQRFKEMAIFKIAALQKVIDNS--------VSLSELELANKQYNELTTKYRD----ILQKDNMLVQRTSN 1017
Cdd:pfam15921 463 VSSLTAQLESTKEMLRKVVEELTAKKMTLESSertvsdltASLQEKERAIEATNAEITKLRSrvdlKLQELQHLKNEGDH 542
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1018 LEHLECENASLKEQMEAISKELEITKEKLHTIEQAWEQETKLGNDSNMDKAKKSMTNSDivsisKKITVLEMKELNERQR 1097
Cdd:pfam15921 543 LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIND-----RRLELQEFKILKDKKD 617
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1098 AEhcqkmyehlrtsLKQMEERNFELETKFTELTKIN---LDAQKVEQMLRDELADSVTKAVSdadrqrilELEKSEVELK 1174
Cdd:pfam15921 618 AK------------IRELEARVSDLELEKVKLVNAGserLRAVKDIKQERDQLLNEVKTSRN--------ELNSLSEDYE 677
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 1175 VEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKALIAklhqhvVSLQISEATALGKLESVTSKLQ 1254
Cdd:pfam15921 678 VLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVA------MGMQKQITAKRGQIDALQSKIQ 751
|
...
gi 568967308 1255 KME 1257
Cdd:pfam15921 752 FLE 754
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
78-563 |
9.15e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 78 EEQAKFENQLKTKVMKLENELEMAQQ-SAGGRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLalrnEEAE 156
Cdd:PRK03918 269 EELKKEIEELEEKVKELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL----EELK 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 157 NENSKLRRENEQLRQDIIDYQ--KQIDSQKESLLSRRGEdsdyrsqlskknyelvqyldeiqtltEANEKIEVQNQEMRK 234
Cdd:PRK03918 345 KKLKELEKRLEELEERHELYEeaKAKKEELERLKKRLTG--------------------------LTPEKLEKELEELEK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 235 NLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTdllkakdEEDDPVMMavnakvEEWKLILSSKD 314
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT-------EEHRKELL------EEYTAELKRIE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 315 DEIIEYQQMLQSLRGKLKNAQ-LDADKSNIMALKQGIQerdsQIKMLTEQVEQYTKE-MEKNTFIIEDLKNELQKDKGts 392
Cdd:PRK03918 466 KELKEIEEKERKLRKELRELEkVLKKESELIKLKELAE----QLKELEEKLKKYNLEeLEKKAEEYEKLKEKLIKLKG-- 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 393 nfyQQTHYMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVE-ALKRLKDYESGVYGLEDA---VIEIKNCKAQIKI 468
Cdd:PRK03918 540 ---EIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEElGFESVEELEERLKELEPFyneYLELKDAEKELER 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 469 RDGEMEVLTKEINKLEMKINDILDENEALRERAGlEPKTMIDLTEFRNsKRLKQQQYRAENQVLLKEIESLEEERLDLKR 548
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELE-ELEKKYSEEEYEE-LREEYLELSRELAGLRAELEELEKRREEIKK 694
|
490
....*....|....*
gi 568967308 549 KIRQMAQERGKRNAA 563
Cdd:PRK03918 695 TLEKLKEELEEREKA 709
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
27-674 |
9.55e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 9.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 27 KLLISLSKVEVNELKNEDQENMIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMAQQSAG 106
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 107 GRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQlalrNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKES 186
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREA----EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSS 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 187 LLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQ 266
Cdd:pfam02463 389 AAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 267 ---IKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLIL-----SSKDDEIIEYQQMLQSLRGKLKNAQLDA 338
Cdd:pfam02463 469 kseDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALikdgvGGRIISAHGRLGDLGVAVENYKVAISTA 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 339 DKSNIMALKQGIQERDSQIKMLTEQveqyTKEMEKNTFIIEDLKNELQKDKGTSNFYQQTHYMKIHSKVQILEEKTKEAE 418
Cdd:pfam02463 549 VIVEVSATADEVEERQKLVRALTEL----PLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKV 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 419 RIAELAEAD-AREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEAL 497
Cdd:pfam02463 625 VEGILKDTElTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKK 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 498 RERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASGLTIDDLNLSETF 577
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967308 578 SH---ENKIEGRKLNFMSLNNMNETQSKNETIVQDLPIQEEQSRNAELELDHQRSQAEQNEFLSRELAEKEKDLERSRTV 654
Cdd:pfam02463 785 KLkveEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEIT 864
|
650 660
....*....|....*....|
gi 568967308 655 IAKFQSKLKELVEENKQLEE 674
Cdd:pfam02463 865 KEELLQELLLKEEELEEQKL 884
|
|
|