|
Name |
Accession |
Description |
Interval |
E-value |
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
263-336 |
1.81e-39 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 140.36 E-value: 1.81e-39
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568967527 263 QSQLPVFTRFDNPAAVSPTP-TRQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESFLDVRNLATFAFFCFLG 336
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLlTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
444-673 |
4.40e-36 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 137.06 E-value: 4.40e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 444 LKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmlakslmpqiipgkK 523
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADY--------------E 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 524 YAARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNAD 603
Cdd:COG0457 67 QALELDPDDAEALNNLGL-ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 604 LWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKLRPEARKRLLNYVNEEPQDA 673
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
561-740 |
6.74e-35 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 133.59 E-value: 6.74e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 561 ISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALF 640
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 641 NSAILMQESGEVKlrpEARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQT 720
Cdd:COG0457 81 NLGLALQALGRYE---EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180
....*....|....*....|
gi 568967527 721 AKELKALPILEELLKYYPDH 740
Cdd:COG0457 158 GRYEEALELLEKLEAAALAA 177
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
481-737 |
1.19e-34 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 132.82 E-value: 1.19e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 481 QPDDIGAHMNVGRTYKNLNRTREAEASYmlakslmpqiipgkKYAARIAPNHLNVYINLANlIRANESRLEEADQLYRQA 560
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDY--------------EKALELDPDDAEALYNLGL-AYLRLGRYEEALADYEQA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 561 ISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALF 640
Cdd:COG0457 69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 641 NSAILMQESGEVKLRPEARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQT 720
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALA 228
|
250
....*....|....*..
gi 568967527 721 AKELKALPILEELLKYY 737
Cdd:COG0457 229 LLLALRLAALALYQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
549-804 |
1.23e-34 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 133.70 E-value: 1.23e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 549 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRA 628
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 629 LELNPKHKLALFNSAILMQESGEVKlrpEARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRS 708
Cdd:COG2956 103 LELDPDDAEALRLLAEIYEQEGDWE---KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 709 ALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILMNQkKDIPGAKKCFEKILEMDPSNVQgKHNLCVVYFE 788
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL-GDPEEALELLRKALELDPSDDL-LLALADLLER 257
|
250
....*....|....*.
gi 568967527 789 EKELLKAERCLVETLA 804
Cdd:COG2956 258 KEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
454-735 |
2.31e-34 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 132.93 E-value: 2.31e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 454 WNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmlakslmpqiipgkKYAARIAPNHL 533
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIH--------------QKLLERDPDRA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 534 NVYINLANL-IRANesRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVY 612
Cdd:COG2956 77 EALLELAQDyLKAG--LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 613 IELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKlrpEARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEA 692
Cdd:COG2956 155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYE---EAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568967527 693 ESWMKKAIKLQPDfRSALFNLALLYSQTAKELKALPILEELLK 735
Cdd:COG2956 232 LELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
571-807 |
3.08e-33 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 129.46 E-value: 3.08e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 571 YISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESG 650
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 651 EVKlrpEARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPIL 730
Cdd:COG2956 91 LLD---RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568967527 731 EELLKYYPDHTKGLILKGDILMnQKKDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAP 807
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYL-EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
439-703 |
5.53e-33 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 129.08 E-value: 5.53e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 439 LFMSALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmlakslmpqi 518
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL---------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 519 ipgkKYAARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELD 598
Cdd:COG2956 100 ----EKLLELDPDDAEALRLLAE-IYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 599 RNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKlrpEARKRLLNYVNEEPQDANgYFN 678
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE---EALELLRKALELDPSDDL-LLA 250
|
250 260
....*....|....*....|....*
gi 568967527 679 LGMLAMDDKKDSEAESWMKKAIKLQ 703
Cdd:COG2956 251 LADLLERKEGLEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
450-678 |
9.91e-27 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 116.63 E-value: 9.91e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 450 NAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmlakslmpqiipgkKYAARIA 529
Cdd:COG3914 43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALY--------------RRALALN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 530 PNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLA 609
Cdd:COG3914 109 PDNAEALFNLGNLLLALG-RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568967527 610 IVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKLRPEARKRLLNYVNEEPQDANGYFN 678
Cdd:COG3914 188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALL 256
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
448-807 |
2.33e-26 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 116.34 E-value: 2.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 448 KNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmlakslmpqiipgkKYAAR 527
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF--------------EKVLT 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 528 IAPNHLNVYINLANLIRANeSRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYN 607
Cdd:TIGR02917 528 IDPKNLRAILALAGLYLRT-GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 608 LAIVYIELKEPNEALKNFNRALELNPKHKLAL-----------------------------FNSAILMQESGEVKL-RPE 657
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALllladayavmknyakaitslkralelkpdNTEAQIGLAQLLLAAkRTE 686
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 658 ARKRLLNYV-NEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDfRSALFNLALLYSQTAKELKALPILEELLKY 736
Cdd:TIGR02917 687 SAKKIAKSLqKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKT 765
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568967527 737 YPDHTKGLILKGDILMNQKKDIPGAKKcFEKILEMDPSNVQGKHNLCVVYFEEKE---LLKAERclveTLALAP 807
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKH-YQTVVKKAPDNAVVLNNLAWLYLELKDpraLEYAER----ALKLAP 834
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
443-813 |
2.50e-26 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 116.34 E-value: 2.50e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 443 ALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAE--ASYMLAK-------- 512
Cdd:TIGR02917 185 VLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEkhADALLKKapnsplah 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 513 ------------------------SLMPQIIPGKKYAARI---------APNHLNVY----------INLANLIRANESR 549
Cdd:TIGR02917 265 ylkalvdfqkknyedaretlqdalKSAPEYLPALLLAGASeyqlgnleqAYQYLNQIlkyapnshqaRRLLASIQLRLGR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 550 LEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRAL 629
Cdd:TIGR02917 345 VDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 630 ELNPKHKLALFNSAILMQESGEVKlrpEARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSA 709
Cdd:TIGR02917 425 QLDPELGRADLLLILSYLRSGQFD---KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 710 LFNLALLYSQTAKELKALPILEELLKYYPDHtKGLILKGDILMNQKKDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEE 789
Cdd:TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKN-LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK 580
|
410 420
....*....|....*....|....*
gi 568967527 790 KELLKAERCLVETLALAP-HEEYIQ 813
Cdd:TIGR02917 581 GQLKKALAILNEAADAAPdSPEAWL 605
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
443-808 |
5.16e-24 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 108.63 E-value: 5.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 443 ALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmlakslmpqiipgk 522
Cdd:TIGR02917 355 ALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL-------------- 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 523 KYAARIAPNHLNVYINLAnliranesrleeadqlyrqaismrpdfkQAYISRGElllkMNKPLKAKEAYLKALEldrNNA 602
Cdd:TIGR02917 421 ETAAQLDPELGRADLLLI----------------------------LSYLRSGQ----FDKALAAAKKLEKKQP---DNA 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 603 DLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSA-ILMQESgevklRPE-ARKRLLNYVNEEPQDANGYFNLG 680
Cdd:TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLArIDIQEG-----NPDdAIQRFEKVLTIDPKNLRAILALA 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 681 MLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILMNQkKDIPG 760
Cdd:TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA-GDLNK 619
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568967527 761 AKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAPH 808
Cdd:TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD 667
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
447-808 |
5.40e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 105.55 E-value: 5.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 447 NKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAE--------------------A 506
Cdd:TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARalidevltadpgnvdalllkG 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 507 SYMLAKSLMPQIIPGKKYAARIAPNHLNVYINLAN-LIRANEsrLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPL 585
Cdd:TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATiLIEAGE--FEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 586 KAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLAL------------FNSAI--------- 644
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARrllasiqlrlgrVDEAIatlspalgl 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 645 ------LMQESGEVKLR---PEARKRLLNYVNE-EPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLA 714
Cdd:TIGR02917 359 dpddpaALSLLGEAYLAlgdFEKAAEYLAKATElDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 715 LLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILMNqKKDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLK 794
Cdd:TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG-KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517
|
410
....*....|....
gi 568967527 795 AERCLVETLALAPH 808
Cdd:TIGR02917 518 AIQRFEKVLTIDPK 531
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
533-672 |
1.43e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 94.49 E-value: 1.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 533 LNVYINLANLIRANEsRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVY 612
Cdd:COG4783 4 AEALYALAQALLLAG-DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 613 IELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEvklRPEARKRLLNYVNEEPQD 672
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR---PDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
552-684 |
1.52e-21 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 91.22 E-value: 1.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 552 EADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALEL 631
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 568967527 632 NPKHKLALFNSAILMQESGEVKlrpEARKRLLNYVNEEPQDANGYFNLGMLAM 684
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYA---EAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
669-822 |
4.30e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 93.53 E-value: 4.30e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 669 EPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKG 748
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568967527 749 DILMNQKkDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAPHEEYIQRHLSIVRDR 822
Cdd:COG0457 84 LALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
410-662 |
9.83e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 97.76 E-value: 9.83e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 410 LSWVCLSMVILTHALKTLHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHM 489
Cdd:COG3914 71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 490 NVGRTYKNLNRTREAEASYMLakslmpqiipgkkyAARIAPNHLNVYINLANLIRANeSRLEEADQLYRQAISMRPDFKQ 569
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRR--------------ALELDPDNAEALNNLGNALQDL-GRLEEAIAAYRRALELDPDNAD 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 570 AYISRGELLLKMNKPLKAkEAYLKALELDRNNADLWYNLAIVYIelkEPNEALKNFNRALELNPKHKLALFNSAILMQEs 649
Cdd:COG3914 216 AHSNLLFALRQACDWEVY-DRFEELLAALARGPSELSPFALLYL---PDDDPAELLALARAWAQLVAAAAAPELPPPPN- 290
|
250
....*....|...
gi 568967527 650 gevklRPEARKRL 662
Cdd:COG3914 291 -----PRDPDRKL 298
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
525-634 |
3.02e-20 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 87.37 E-value: 3.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 525 AARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADL 604
Cdd:COG4235 9 ALAANPNDAEGWLLLGR-AYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
|
90 100 110
....*....|....*....|....*....|
gi 568967527 605 WYNLAIVYIELKEPNEALKNFNRALELNPK 634
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
525-810 |
3.49e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.83 E-value: 3.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 525 AARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMnkplkAKEAYLKALELDRNNADL 604
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLAL-----AAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 605 WYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGevklRPEarkrllnyvneepqdangyfnlgmlam 684
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG----RLE--------------------------- 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 685 ddkkdsEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILMNQkKDIPGAKKC 764
Cdd:COG3914 130 ------EALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDL-GRLEEAIAA 202
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568967527 765 FEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAPHEE 810
Cdd:COG3914 203 YRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPS 248
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
451-635 |
3.66e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 84.86 E-value: 3.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 451 AKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEAsymlakslmpqiipgkkyaariap 530
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIV------------------------ 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 531 nhlnvyinlanliranesrleeadqLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAI 610
Cdd:COG4783 60 -------------------------LLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLAR 114
|
170 180
....*....|....*....|....*
gi 568967527 611 VYIELKEPNEALKNFNRALELNPKH 635
Cdd:COG4783 115 AYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
502-633 |
4.14e-19 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 85.01 E-value: 4.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 502 REAEASYMLAKSLMPQIIPGKKYAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKM 581
Cdd:COG5010 22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568967527 582 NKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNP 633
Cdd:COG5010 102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
523-820 |
8.70e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 92.07 E-value: 8.70e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 523 KYAARIAPNHLNVYINLANL------IRANESRLEEADQLYRQAISMRPDFKQAYISRGE----LLLKMNKPLKAKEAYL 592
Cdd:TIGR02917 46 KNALQKDPNDAEARFLLGKIylalgdYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKfqqvLDELPGKTLLDDEGAA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 593 KALELdrnnadlwynLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKlrpEARKRLLNYVNEEPQD 672
Cdd:TIGR02917 126 ELLAL----------RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD---EARALIDEVLTADPGN 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 673 ANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILM 752
Cdd:TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDF 272
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568967527 753 nQKKDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAPHEEYIQRHLSIVR 820
Cdd:TIGR02917 273 -QKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
468-681 |
1.02e-18 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 86.12 E-value: 1.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 468 EKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYMLAKSLMPQIIPgkkyAARIAPNHLNVYINLANLiRANE 547
Cdd:COG4785 12 LALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERID----RALALPDLAQLYYERGVA-YDSL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 548 SRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNR 627
Cdd:COG4785 87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 628 ALELNPKHKLALFNSAILMQESGevklRPEARKRLLNY------VNEEPQDANGYFNLGM 681
Cdd:COG4785 167 ALELDPNDPERALWLYLAERKLD----PEKALALLLEDwataylLQGDTEEARELFKLAL 222
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
589-816 |
1.28e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 90.82 E-value: 1.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 589 EAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKLRPEARKRLLNYVNE 668
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 669 EPQDANGYFNLGmlamddkKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKG 748
Cdd:COG3914 81 LELAALLLQALG-------RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLG 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568967527 749 DILMNQKkDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAPHEEYIQRHL 816
Cdd:COG3914 154 EALRRLG-RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
657-775 |
8.94e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 80.44 E-value: 8.94e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 657 EARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKY 736
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 568967527 737 YPDHTKGLILKGDILMnQKKDIPGAKKCFEKILEMDPSN 775
Cdd:COG4235 81 DPDNPEALYLLGLAAF-QQGDYAEAIAAWQKLLALLPAD 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
586-750 |
1.28e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 80.05 E-value: 1.28e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 586 KAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKhklalfnsailmqesgevklrpearkrllny 665
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------------------------------- 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 666 vneepqDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLI 745
Cdd:COG4235 50 ------NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
....*
gi 568967527 746 LKGDI 750
Cdd:COG4235 124 LEASI 128
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
602-775 |
2.06e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 79.85 E-value: 2.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 602 ADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLAlfnsailmqesgevklrpearkrllnyvneepqdangYFNLGM 681
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------------------------------FALLGE 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 682 LAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILMNQkKDIPGA 761
Cdd:COG4783 47 ILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL-GRPDEA 125
|
170
....*....|....
gi 568967527 762 KKCFEKILEMDPSN 775
Cdd:COG4783 126 IAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
549-634 |
3.04e-17 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 77.52 E-value: 3.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 549 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAkEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRA 628
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 568967527 629 LELNPK 634
Cdd:COG3063 86 LELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
671-809 |
3.47e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 79.08 E-value: 3.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 671 QDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDI 750
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568967527 751 LMNQkKDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAPHE 809
Cdd:COG4783 82 LLKA-GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
524-670 |
5.10e-16 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 76.15 E-value: 5.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 524 YAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNAD 603
Cdd:COG5010 10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568967527 604 LWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKlrpEARKRLLNYVNEEP 670
Cdd:COG5010 90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD---EAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
469-603 |
7.72e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 75.04 E-value: 7.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 469 KALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmlakslmpqiipgkKYAARIAPNHLNVYINLANLiRANES 548
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAY--------------EKALRLDPDNADALLDLAEA-LLAAG 65
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 568967527 549 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNAD 603
Cdd:COG4235 66 DTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
577-670 |
8.23e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 73.67 E-value: 8.23e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 577 LLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKnFNRALELNPKHKLALFNSAILMQESGEVKlrp 656
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD--- 76
|
90
....*....|....
gi 568967527 657 EARKRLLNYVNEEP 670
Cdd:COG3063 77 EALAYLERALELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
432-567 |
6.90e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.53 E-value: 6.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 432 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmla 511
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALL--- 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 568967527 512 kslmpqiipgkKYAARIAPNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPDF 567
Cdd:COG4783 96 -----------EKALKLDPEHPEAYLRLARAYRALG-RPDEAIAALEKALELDPDD 139
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
569-750 |
3.77e-14 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 72.76 E-value: 3.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 569 QAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQE 648
Cdd:TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 649 SGEVKlrpEARKRLLNYVNEE--PQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKA 726
Cdd:TIGR02521 112 QGKYE---QAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188
|
170 180
....*....|....*....|....
gi 568967527 727 LPILEELLKYYPDHTKGLILKGDI 750
Cdd:TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRI 212
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
494-771 |
3.96e-14 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 76.56 E-value: 3.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 494 TYKNLNRTREAEASYMLA------KSLMPQIIPGKKYAARIAPN---------HLNVYINLANLIRANESRLEEADQLYR 558
Cdd:TIGR00990 276 RPAGLEDSNELDEETGNGqlqlglKSPESKADESYEEAARAFEKaldlgklgeKEAIALNLRGTFKCLKGKHLEALADLS 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 559 QAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLA 638
Cdd:TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 639 LFNSAILMQESGEVKLRPEARKRLLNYVNEEPQDANGYfnlGMLAMDDKKDSEAESWMKKAIKLQPDFR------SALFN 712
Cdd:TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYY---GELLLDQNKFDEAIEKFDTAIELEKETKpmymnvLPLIN 512
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 713 LALLYSQTAKEL-KALPILEELLKYYPDHTKGLILKGDILMnQKKDIPGAKKCFEKILEM 771
Cdd:TIGR00990 513 KALALFQWKQDFiEAENLCEKALIIDPECDIAVATMAQLLL-QQGDVDEALKLFERAAEL 571
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
673-816 |
1.42e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.07 E-value: 1.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 673 ANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILM 752
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568967527 753 nQKKDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAPHEEYIQRHL 816
Cdd:COG2956 88 -KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
700-823 |
3.16e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.42 E-value: 3.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 700 IKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILMNQKkDIPGAKKCFEKILEMDPSNVQGK 779
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-RYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 568967527 780 HNLCVVYFEEKELLKAERCLVETLALAPHEEYIQRHLSIVRDRI 823
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL 123
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
432-598 |
6.92e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 70.14 E-value: 6.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 432 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmla 511
Cdd:COG2956 125 DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAAL--- 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 512 kslmpqiipgkKYAARIAPNHLNVYINLANLIRAnESRLEEADQLYRQAISMRPDfKQAYISRGELLLKMNKPLKAKEAY 591
Cdd:COG2956 202 -----------ERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALL 268
|
....*..
gi 568967527 592 LKALELD 598
Cdd:COG2956 269 ERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
440-735 |
8.57e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.42 E-value: 8.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 440 FMSALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAeasYMLAKSLMPQii 519
Cdd:TIGR02917 624 FKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA---KKIAKSLQKQ-- 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 520 pgkkyaariAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDfKQAYISRGELLLKMNKPLKAKEAYLKALELDR 599
Cdd:TIGR02917 699 ---------HPKAALGFELEGD-LYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHP 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 600 NNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGevklRPEARKRLLNYVNEEPQDANGYFNL 679
Cdd:TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELK----DPRALEYAERALKLAPNIPAILDTL 843
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 568967527 680 GMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLK 735
Cdd:TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
549-704 |
1.06e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.91 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 549 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRA 628
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568967527 629 LELNPKHKLALFNSAILMQESGEVKlrpEARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQP 704
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKD---EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
443-577 |
1.59e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 65.41 E-value: 1.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 443 ALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmlakslmpqiipgk 522
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELL-------------- 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 568967527 523 KYAARIAPNHLNVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGEL 577
Cdd:COG4235 75 ERALALDPDNPEALYLLG-LAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
691-807 |
2.99e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 64.64 E-value: 2.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 691 EAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILMNQKkDIPGAKKCFEKILE 770
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-DTEEAEELLERALA 79
|
90 100 110
....*....|....*....|....*....|....*..
gi 568967527 771 MDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAP 807
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
536-788 |
3.35e-12 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 66.86 E-value: 3.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 536 YINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDR-----NNADLWYNLAI 610
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalalpDLAQLYYERGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 611 VYIELKEPNEALKNFNRALELNPKhklalfnsailmqesgevklRPEArkrllnyvneepqdangYFNLGMLAMDDKKDS 690
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPD--------------------LAEA-----------------YNNRGLAYLLLGDYD 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 691 EAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGdiLMNQKKDIPGAKKCFEKILE 770
Cdd:COG4785 125 AALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLY--LAERKLDPEKALALLLEDWA 202
|
250
....*....|....*...
gi 568967527 771 MDPSNvQGKHNLCVVYFE 788
Cdd:COG4785 203 TAYLL-QGDTEEARELFK 219
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
609-813 |
1.47e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.57 E-value: 1.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 609 AIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGE------------------VKLRPE-AR--------KR 661
Cdd:TIGR02917 29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDyaaaekelrkalslgypkNQVLPLlARayllqgkfQQ 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 662 LLNYVNEEPQDAN------------GYFNLGMLAmddkkdsEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPI 729
Cdd:TIGR02917 109 VLDELPGKTLLDDegaaellalrglAYLGLGQLE-------LAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 730 LEELLKYYPDHTKGLILKGDILMNQKKdIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAPHE 809
Cdd:TIGR02917 182 IDEVLTADPGNVDALLLKGDLLLSLGN-IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260
|
....*..
gi 568967527 810 ---EYIQ 813
Cdd:TIGR02917 261 plaHYLK 267
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
423-516 |
1.61e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.44 E-value: 1.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 423 ALKTLHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTR 502
Cdd:COG5010 60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
90
....*....|....
gi 568967527 503 EAEASYMLAKSLMP 516
Cdd:COG5010 140 EAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
708-823 |
5.28e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.36 E-value: 5.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 708 SALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILMNQKkDIPGAKKCFEKILEMDPSNVQGKHNLCVVYF 787
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-DLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110
....*....|....*....|....*....|....*.
gi 568967527 788 EEKELLKAERCLVETLALAPHEEYIQRHLSIVRDRI 823
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
611-739 |
1.17e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.03 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 611 VYIELKEPNEALKNFNRALELNPKhklalfnsailmqesgevklrpearkrllnyvneepqDANGYFNLGMLAMDDKKDS 690
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD-------------------------------------NADALNNLGLLLLEQGRYD 43
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 568967527 691 EAESWmKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPD 739
Cdd:COG3063 44 EAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
460-566 |
1.24e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.64 E-value: 1.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 460 ALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEAsymLAKSLmpqiipgkkyaaRIAPNHLNVYINL 539
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA---LEKAL------------KLDPNNAEALLNL 65
|
90 100
....*....|....*....|....*..
gi 568967527 540 AnLIRANESRLEEADQLYRQAISMRPD 566
Cdd:COG3063 66 A-ELLLELGDYDEALAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
460-565 |
2.24e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.97 E-value: 2.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 460 ALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmlakslmpqiipgkKYAARIAPNHLNVYINL 539
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY--------------EKALALSPDNPNAYSNL 128
|
90 100
....*....|....*....|....*.
gi 568967527 540 AnLIRANESRLEEADQLYRQAISMRP 565
Cdd:COG5010 129 A-ALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
423-517 |
3.00e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 3.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 423 ALKTLHRnwdweseytlfmsALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTR 502
Cdd:COG4783 57 AIVLLHE-------------ALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
|
90
....*....|....*
gi 568967527 503 EAEASYMLAKSLMPQ 517
Cdd:COG4783 124 EAIAALEKALELDPD 138
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
682-777 |
3.59e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.49 E-value: 3.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 682 LAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPiLEELLKYYPDHTKGLILKGDILMNQkKDIPGA 761
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL-GDYDEA 78
|
90
....*....|....*.
gi 568967527 762 KKCFEKILEMDPSNVQ 777
Cdd:COG3063 79 LAYLERALELDPSALR 94
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
466-735 |
3.66e-09 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 59.15 E-value: 3.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 466 NFEKALKYFLQATHVQPD-DIGAHMNVGRTYKNLNRTREAEASymLAKslMPQIIPGKKYAARIApnhLNVYINLAN--- 541
Cdd:COG3071 65 DYERRDEYLAQALELAPEaELAVLLTRAELLLDQGQAEQALAT--LEA--LRAGAPRHPQVLRLL---LQAYRQLGDwee 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 542 -------LIRANESRLEEADQLYRQAISmrpdfkqayisrgELLLKMNKPLKAKEAYLKAL-ELDRNNADLWYNLAIVYI 613
Cdd:COG3071 138 llellpaLRKHKALSAEEAQALERRAYL-------------GLLRQAARDAEALKALWKALpRAERRDPELAAAYARALI 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 614 ELKEPNEALKNFNRALELNPKHKLALfnsaiLMQESgEVKLRPEARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEAE 693
Cdd:COG3071 205 ALGDHDEAERLLREALKRQWDPRLVR-----LYGRL-QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAR 278
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568967527 694 SWMKKAIKLQPDfRSALFNLALLYSQTAKELKALPILEELLK 735
Cdd:COG3071 279 EYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALA 319
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
447-630 |
4.83e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 57.62 E-value: 4.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 447 NKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYmlakslmpqiipgkKYAA 526
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDF--------------DRAL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 527 RIAPNHLNVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNkPLKAKEAYLKAleldrnnadlWy 606
Cdd:COG4785 135 ELDPDYAYAYLNRG-IALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD-PEKALALLLED----------W- 201
|
170 180
....*....|....*....|....
gi 568967527 607 nlAIVYIELKEPNEALKNFNRALE 630
Cdd:COG4785 202 --ATAYLLQGDTEEARELFKLALA 223
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
657-773 |
7.66e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.74 E-value: 7.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 657 EARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKY 736
Cdd:COG5010 38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL 117
|
90 100 110
....*....|....*....|....*....|....*..
gi 568967527 737 YPDHTKGLILKGDILMNQkKDIPGAKKCFEKILEMDP 773
Cdd:COG5010 118 SPDNPNAYSNLAALLLSL-GQDDEAKAALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
432-596 |
8.23e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 56.85 E-value: 8.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 432 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYMLA 511
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 512 KSLMPQiipgkkyaarIAPNHLNVYINLANLiranesRLEEADQLYRQAISMrpdfkqAYISRGElllkmnkPLKAKEAY 591
Cdd:COG4785 168 LELDPN----------DPERALWLYLAERKL------DPEKALALLLEDWAT------AYLLQGD-------TEEARELF 218
|
....*
gi 568967527 592 LKALE 596
Cdd:COG4785 219 KLALA 223
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
602-635 |
1.72e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 50.88 E-value: 1.72e-08
10 20 30
....*....|....*....|....*....|....
gi 568967527 602 ADLWYNLAIVYIELKEPNEALKNFNRALELNPKH 635
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
586-705 |
2.12e-08 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 54.68 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 586 KAKEAYLKALELDRNNAD---LWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKLRpearkrl 662
Cdd:PRK02603 53 EALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEE------- 125
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 568967527 663 lnyvNEEPQDANGYFnlgmlamddkkDSEAESWmKKAIKLQPD 705
Cdd:PRK02603 126 ----AGDQDEAEALF-----------DKAAEYW-KQAIRLAPN 152
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
578-671 |
2.88e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.69 E-value: 2.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 578 LLKMNKPLKAKEAYLKALELDRNN---ADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKL---ALFNSAILMQESGE 651
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90 100
....*....|....*....|
gi 568967527 652 vklRPEARKRLLNYVNEEPQ 671
Cdd:COG1729 83 ---YDKARATLEELIKKYPD 99
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
546-638 |
4.59e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.92 E-value: 4.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 546 NESRLEEADQLYRQAISMRPDFK---QAYISRGELLLKMNKPLKAKEAYLKALELDRNN---ADLWYNLAIVYIELKEPN 619
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYD 84
|
90
....*....|....*....
gi 568967527 620 EALKNFNRALELNPKHKLA 638
Cdd:COG1729 85 KARATLEELIKKYPDSEAA 103
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
569-812 |
5.77e-08 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 55.33 E-value: 5.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 569 QAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHK------------ 636
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGyekylylgqlsg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 637 ----LALFNSAI-LMQE---------SGEVKLRPEARKRLlnyvneepqdANGYFNLG---M--LAMDDKKDSEAESWMK 697
Cdd:cd24142 81 geeaLQYYEKGIeILEEelqalqaasAEAEEEAEELKRKL----------SSALCALAeiyMtdLCDEPDAEQRCEELIT 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 698 KAIKLQPDFRSALFNLA-LLYSQTaKELKALPILE---ELLKYYPDHTKGLILKGDILMNQKKDIPG------------- 760
Cdd:cd24142 151 KALELDPTNPEALQTLAsLRISQQ-RPDEAKEALRrslELWKDLKEEDEEEAEEDEAEEEDVPSYEFrislakllielem 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568967527 761 ---AKKCFEKILEMDPSNVQGKHNLCVVYFEEKE---------LLKAERCLVETLALAPHEEYI 812
Cdd:cd24142 230 yeeALEVLEQLLDEDDEDVEVWYLLGWAYYLLGEkeqeeaaelLRDARELLEKALKLYEKLEYE 293
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
602-635 |
1.95e-07 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 47.83 E-value: 1.95e-07
10 20 30
....*....|....*....|....*....|....
gi 568967527 602 ADLWYNLAIVYIELKEPNEALKNFNRALELNPKH 635
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
716-807 |
2.07e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.78 E-value: 2.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 716 LYSQTAKELKALPILEELLKYYPDHTKGLILKGDILMNQKkDIPGAKKcFEKILEMDPSNVQGKHNLCVVYFEEKELLKA 795
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|..
gi 568967527 796 ERCLVETLALAP 807
Cdd:COG3063 79 LAYLERALELDP 90
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
427-516 |
2.49e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.40 E-value: 2.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 427 LHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFEKALKyFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEA 506
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 568967527 507 SYMLAKSLMP 516
Cdd:COG3063 81 YLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
443-529 |
3.57e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.00 E-value: 3.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 443 ALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTREAEASYMLAKSLMPQIIPGK 522
Cdd:COG4235 43 ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
....*..
gi 568967527 523 KYAARIA 529
Cdd:COG4235 123 LLEASIA 129
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
656-740 |
4.50e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.22 E-value: 4.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 656 PEARKRLLNYVNEEPQD---ANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPD---FRSALFNLALLYSQTAKELKALPI 729
Cdd:COG1729 10 DEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARAT 89
|
90
....*....|.
gi 568967527 730 LEELLKYYPDH 740
Cdd:COG1729 90 LEELIKKYPDS 100
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
654-807 |
5.85e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.96 E-value: 5.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 654 LRPEARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEEL 733
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568967527 734 LKYYPDHTKGLILKGDILMnQKKDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAP 807
Cdd:COG5010 81 LQLDPNNPELYYNLALLYS-RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
602-634 |
9.88e-07 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 45.98 E-value: 9.88e-07
10 20 30
....*....|....*....|....*....|...
gi 568967527 602 ADLWYNLAIVYIELKEPNEALKNFNRALELNPK 634
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
590-623 |
1.15e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 45.61 E-value: 1.15e-06
10 20 30
....*....|....*....|....*....|....
gi 568967527 590 AYLKALELDRNNADLWYNLAIVYIELKEPNEALK 623
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
725-819 |
1.17e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 725 KALPILEELLKYYPDHTKGLILKGDILMNQKkDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLA 804
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLG-RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79
|
90
....*....|....*
gi 568967527 805 LAPHEEYIQRHLSIV 819
Cdd:COG4235 80 LDPDNPEALYLLGLA 94
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
607-817 |
2.53e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 49.53 E-value: 2.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 607 NLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKLRPEARKRLLNYVNEE---PQDANGYFNLGMLA 683
Cdd:COG4785 4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalPDLAQLYYERGVAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 684 MDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQtakelkalpileellkyypdhtkglilkgdilmnqKKDIPGAKK 763
Cdd:COG4785 84 DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLL-----------------------------------LGDYDAALE 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568967527 764 CFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAPH--EEYIQRHLS 817
Cdd:COG4785 129 DFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdpERALWLYLA 184
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
570-634 |
2.55e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.84 E-value: 2.55e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568967527 570 AYISRGELLLKMNKPLKAKEAYLKALELDR--------NNADLWYNLAIVYIELKEPNEALKNFNRALELNPK 634
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
709-822 |
2.57e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 709 ALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILMNQKKDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFE 788
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100
|
90 100 110
....*....|....*....|....*....|....
gi 568967527 789 EKELLKAERCLVETLALAPHEEYIQRHLSIVRDR 822
Cdd:COG5010 101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
423-614 |
3.38e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 50.75 E-value: 3.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 423 ALKTLHRNwDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTR 502
Cdd:TIGR00990 372 ASMNLELG-DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 503 EAEASYMLAKSLMPQI--IPG----------------KKYAARIA------PNHLNV--YINLANLIRANESRLEEADQL 556
Cdd:TIGR00990 451 SSMATFRRCKKNFPEApdVYNyygellldqnkfdeaiEKFDTAIEleketkPMYMNVlpLINKALALFQWKQDFIEAENL 530
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568967527 557 YRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYnlAIVYIE 614
Cdd:TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQ--AISYAE 586
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
681-774 |
3.80e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.52 E-value: 3.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 681 MLAMDDKKDSEAESWMKKAIKLQPDFR---SALFNLALLYSQTAKELKALPILEELLKYYPDHTK---GLILKGDILMNQ 754
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80
|
90 100
....*....|....*....|
gi 568967527 755 kKDIPGAKKCFEKILEMDPS 774
Cdd:COG1729 81 -GDYDKARATLEELIKKYPD 99
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
587-705 |
3.66e-05 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 45.00 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 587 AKEAYLKALELDRNNAD---LWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKLRpearkrll 663
Cdd:CHL00033 54 ALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE-------- 125
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 568967527 664 nyvNEEPQDANGYFnlgmlamddkkDSEAESWmKKAIKLQPD 705
Cdd:CHL00033 126 ---QGDSEIAEAWF-----------DQAAEYW-KQAIALAPG 152
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
569-612 |
5.56e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 41.30 E-value: 5.56e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 568967527 569 QAYISRGELLlkmnkplKAKEAYLKALELDRNNADLWYNLAIVY 612
Cdd:pfam13414 2 DAYYEQGKYE-------EAIEAYKKALKLDPDNPEAYYNLGLAY 38
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
587-638 |
9.30e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 41.03 E-value: 9.30e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 568967527 587 AKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLA 638
Cdd:pfam14559 7 ALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
451-484 |
1.03e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.10 E-value: 1.03e-04
10 20 30
....*....|....*....|....*....|....
gi 568967527 451 AKLWNNVGHALENEKNFEKALKYFLQATHVQPDD 484
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
569-601 |
1.26e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.71 E-value: 1.26e-04
10 20 30
....*....|....*....|....*....|...
gi 568967527 569 QAYISRGELLLKMNKPLKAKEAYLKALELDRNN 601
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
569-601 |
1.69e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 1.69e-04
10 20 30
....*....|....*....|....*....|...
gi 568967527 569 QAYISRGELLLKMNKPLKAKEAYLKALELDRNN 601
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
602-634 |
1.72e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 39.30 E-value: 1.72e-04
10 20 30
....*....|....*....|....*....|...
gi 568967527 602 ADLWYNLAIVYIELKEPNEALKNFNRALELNPK 634
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
451-484 |
2.04e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 2.04e-04
10 20 30
....*....|....*....|....*....|....
gi 568967527 451 AKLWNNVGHALENEKNFEKALKYFLQATHVQPDD 484
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
575-636 |
4.28e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.95 E-value: 4.28e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568967527 575 GELLLKMNKPLKAKEAYLKALE-LDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHK 636
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFK 158
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
593-733 |
5.08e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.92 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 593 KALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPK-HKLALFNSAI------LMQESGEVKLR----PEARKR 661
Cdd:PRK11447 294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHsSNRDKWESLLkvnrywLLIQQGDAALKannlAQAERL 373
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568967527 662 LLNYVNEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKElKALPILEEL 733
Cdd:PRK11447 374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE-KALAFIASL 444
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
586-633 |
5.92e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 43.24 E-value: 5.92e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 586 KAKEA------------YLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNP 633
Cdd:PLN03088 8 KAKEAfvdddfalavdlYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
462-732 |
8.06e-04 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 42.72 E-value: 8.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 462 ENEKNFEKALKYFLQAThVQPDDIGAHMNvGRTYKNLnRTREAEasyMLAKSLMpqiipgKKYAARIApnhLNVYINLan 541
Cdd:cd24145 19 SDKPDPQKALKYYKEAL-EQADELGMDPF-SDEVTGI-RIKIAE---MLEKLGM------YKAAYEVL---ERLYLDC-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 542 LIRANESRLEEADQLYRQA--ISMRPdfkqayisrGELL--LKMNKPLKAKEAYLKALELDRNNADLWYN---------- 607
Cdd:cd24145 82 LRWTLKDDESERGHLIKRDlrISIKL---------GELNkdSELGKWELRERLLKKAVEILLKLGELWMSpsevgaflee 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 608 LAIVYIELKEPNEALKNFNRALELNPKHKLALFN--SAILMQ----ESGEVKLRPEARKRLLNYVNEEPQDANGYFnlgm 681
Cdd:cd24145 153 LATAYDLYGRFCLALPLYMQALSLKGQILLSQANchSLVLMNneaaELALHALRKPLSSTLIEASRLPQKSRDQLL---- 228
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568967527 682 lamddkkdSEAESWMKKAIK----LQPDFR---------SALFNLALLYSQTAKELKALPILEE 732
Cdd:cd24145 229 --------EAALKWAQKALDvaksIKPKDRdpecdqacaLALYNLGVIAEMLGNLDEARKLYKE 284
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
450-529 |
8.75e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 8.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 450 NAKLWnnVGHALENEKNFEKALKYFLQATHVQPDDI---GAHMNVGRTYKNLNRTREAEASYMLAKSLMPQIIPGKKYAA 526
Cdd:COG1729 31 DALYW--LGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARA 108
|
...
gi 568967527 527 RIA 529
Cdd:COG1729 109 RLA 111
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
574-635 |
1.10e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.47 E-value: 1.10e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568967527 574 RGELLLKMNKPLKAKEAYLKALELDRN---NADLWYNLAIVYIELKEPNEALKNFNRALELNPKH 635
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
468-612 |
1.12e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 42.76 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 468 EKALKYFLQATHVQPDDIGAhmnVGRTYKNLNRTREAEASYMLAKSLMPQIIPGKKYAARIAPNHLNVYINLA-NLIRAN 546
Cdd:PRK11447 289 IPELQQAVRANPKDSEALGA---LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGdAALKAN 365
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568967527 547 esRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVY 612
Cdd:PRK11447 366 --NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
521-670 |
1.30e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 42.10 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 521 GKKYAARIApnHLnvYINLANLIRANeSRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRN 600
Cdd:PRK11788 172 GDSLRVEIA--HF--YCELAQQALAR-GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568967527 601 ----NADLWYNlaiVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGevklRPEARKRLLNYVNEEP 670
Cdd:PRK11788 247 ylseVLPKLME---CYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG----PEAAQALLREQLRRHP 313
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
602-662 |
1.96e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.75 E-value: 1.96e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568967527 602 ADLWYNLAIVYIELKEPNEALKNFNRALEL-----NPKHKL---ALFNSAILMQESGEvklRPEARKRL 662
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLtatTLLNLGRLYLELGR---YEEALELL 68
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
680-807 |
2.63e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.61 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 680 GMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKG--------------LI 745
Cdd:PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkwesllkvnrywlLI 355
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568967527 746 LKGDILMNQkKDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAP 807
Cdd:PRK11447 356 QQGDAALKA-NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
547-609 |
2.71e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.18 E-value: 2.71e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568967527 547 ESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLA 609
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
602-645 |
3.91e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 35.86 E-value: 3.91e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 568967527 602 ADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAIL 645
Cdd:pfam13428 1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
451-483 |
4.20e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.58 E-value: 4.20e-03
10 20 30
....*....|....*....|....*....|...
gi 568967527 451 AKLWNNVGHALENEKNFEKALKYFLQATHVQPD 483
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
569-600 |
4.63e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.45 E-value: 4.63e-03
10 20 30
....*....|....*....|....*....|..
gi 568967527 569 QAYISRGELLLKMNKPLKAKEAYLKALELDRN 600
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
460-577 |
4.80e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967527 460 ALENEKNFEKALKYFLQATHVQPDDI---GAHMNVGRTYKNLNRTREAEASYmlakslmpqiipgkKYAARIAPNH---L 533
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAF--------------EKLLKRYPDSpkaP 67
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 568967527 534 NVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGEL 577
Cdd:COG1729 68 DALLKLG-LSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
451-517 |
6.83e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 6.83e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568967527 451 AKLWNNVGHALENEKNFEKALKYFLQA----------THvqPDDIGAHMNVGRTYKNLNRTREAEASYMLAKSLMPQ 517
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKAleiarrllgpDH--PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| |
