|
Name |
Accession |
Description |
Interval |
E-value |
| MIF4G |
pfam02854 |
MIF4G domain; MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). ... |
765-993 |
2.59e-63 |
|
MIF4G domain; MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA.
:
Pssm-ID: 397130 Cd Length: 203 Bit Score: 214.15 E-value: 2.59e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 765 FRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMAlkvpttekpTVTVNFR 844
Cdd:pfam02854 1 LKKVKGILNKLSPENFEKLIKELLKLIMSDPELLKYLIELIFEKAVEEPNFIPAYARLCSGLNL---------RNPTDFG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 845 KLLLNRCQKEFEKdkdddevfekkqkemdeaataeergrlKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCV 924
Cdd:pfam02854 72 IHLLNRLQEEFEK---------------------------RFELEENEQGNRRRRLGLVRFLGELYKFGLLTEKILFECL 124
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568994927 925 VKLLKNH-------DEESLECLCRLLTTIGKDLDFAKAKPRMDQYFNQMEKII---KEKKTSSRIRFMLQDVLDLRQSN 993
Cdd:pfam02854 125 KELLSSLtkedlkrDLFNLECLLTLLTTIGKLLENEKLPKLMDQFLDEIQKYVlskDDPKLSSRLRFMLQDLIELRKNK 203
|
|
| W2_eIF4G1_like |
cd11559 |
C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar ... |
1441-1570 |
5.46e-55 |
|
C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins; eIF4G1 is a component of the multi-subunit eukaryotic translation initiation factor 4F, which facilitates recruitment of the mRNA to the ribosome, a rate-limiting step during translation initiation. This C-terminal domain, whose structure resembles that of a set of concatenated HEAT repeats, has been associated with binding to/recruiting the kinase Mnk1, which phosphorylates eIF4E.
:
Pssm-ID: 211397 Cd Length: 134 Bit Score: 187.49 E-value: 5.46e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1441 EELRRQLEKLLKDGGSNQRVFDWIDANLNEQQIASNTLVRALMTTVCYSAIIFETPLRVDVQVLKVRARLLQKYLC-DEQ 1519
Cdd:cd11559 4 LRVQAELLKLLQEDPNPDELYKWIKENVSPELYASPGFVRALMTAVLKYAIEEKSLPEKEKALLEKYAPLLQKYLDdDEQ 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 568994927 1520 KELQALYALQALVVTLEQPANLLRMFFDALYDEDVVKEDAFYSWESSKDPA 1570
Cdd:cd11559 84 LQLQALYALQALVHTLEFPKGLLLRFFDALYDEDVIEEEAFLKWKEDVDPA 134
|
|
| MA3 |
pfam02847 |
MA3 domain; Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain ... |
1242-1354 |
5.04e-35 |
|
MA3 domain; Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains.
:
Pssm-ID: 397128 Cd Length: 113 Bit Score: 129.70 E-value: 5.04e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1242 VEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRLGIESTLERSTIAREHMGRLLHQLLCAGHLSTAQYYQGLYE 1321
Cdd:pfam02847 1 LKRKIFLILEEYLSSGDYDEAARCLLKLGLPSQHHEVVKVLIECALEESKTYREFYGLLLERLCEFNLISTKQFEKGFWR 80
|
90 100 110
....*....|....*....|....*....|...
gi 568994927 1322 TLELAEDMEIDIPHVWLYLAELITPILQEDGVP 1354
Cdd:pfam02847 81 VLEDLEDLELDIPNAWRNLAEFVARLISDDGLP 113
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
4-463 |
1.36e-09 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 63.42 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 4 APQPTGPPPARSPGLPQPAFPPGQTAPVVFSTPQATQMNTPS-----------QPRQGGF-RSLQHFYPSRA---QPPSS 68
Cdd:PHA03247 2477 APVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAilpdepvgepvHPRMLTWiRGLEELASDDAgdpPPPLP 2556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 69 AASRVQSAAPARPGPAPHVYPAGSQVMMIPSQISYSASQGAYYIPGQGRSTYVVPTQQYPVQPGAPGFYPGA-SPTEFGT 147
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPpSPSPAAN 2636
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 148 YAGAYYPAQGVQQFPASVAPAPVLMNQPPQIapKRERKTIRIRDPNQGGKDITEEIMSGARTASTPTPPQtGGSLEPQPN 227
Cdd:PHA03247 2637 EPDPHPPPTVPPPERPRDDPAPGRVSRPRRA--RRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP-PPTPEPAPH 2713
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 228 GESPqvAVIIRPDDRSQGAAIGGRPGLPGPEHSPGTESQPSSPSPTPSPPPILEPGSESNLGVLSIPGDTMTTGMIPMSV 307
Cdd:PHA03247 2714 ALVS--ATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 308 EESTPISCETGEPyclSPEPTLAEPILEVEVTLSKPIPESEFSSSPLQVSTALVPHKVETHEPNG--VIPSEDLE---PE 382
Cdd:PHA03247 2792 SESRESLPSPWDP---ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsVAPGGDVRrrpPS 2868
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 383 VESSTEPAPPPLSPCASESLVPIAPTAQPEELLNGAPSPPavdlsPVSEPEEQAKKVSSAALASILSPAPPVAPSDTSPA 462
Cdd:PHA03247 2869 RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP-----PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPL 2943
|
.
gi 568994927 463 Q 463
Cdd:PHA03247 2944 A 2944
|
|
| rad2 super family |
cl36701 |
DNA excision repair protein (rad2); All proteins in this family for which functions are known ... |
373-612 |
1.36e-03 |
|
DNA excision repair protein (rad2); All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
The actual alignment was detected with superfamily member TIGR00600:
Pssm-ID: 273166 [Multi-domain] Cd Length: 1034 Bit Score: 43.35 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 373 VIPSEDlEPEVESSTEPAPPPLSpCASESLVPIAPTAQPEELLNG-APSPPAVDLSPVSepeeqakkvSSAALASILSPA 451
Cdd:TIGR00600 520 VKPVSS-EFGLPSQREDKLAIPT-EGTQNLQGISDHPEQFEFQNElSPLETKNNESNLS---------SDAETEGSPNPE 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 452 PPVAPSDTSPAQEEEMEEDDDDEeggeaesekGGEDV--PLDSTPVpaqlSQNLEVAAAtQVAVSVPKRRRKIkELNKKE 529
Cdd:TIGR00600 589 MPSWSSVTVPSEALDNYETTNPS---------NAKEVrnFAETGIQ----TTNVGESAD-LLLISNPMEVEPM-ESEKEE 653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 530 AVGDllDAFKEVDPAVPEVENQPPTGSNPSPESE-------GSMVPTQPEETEEtWDSKEDKIHNAENIQPGEQKYEYKS 602
Cdd:TIGR00600 654 SESD--GSFIEVDSVSSTLELQVPSKSQPTDESEenaenkvASIEGEHRKEIED-LLFDESEEDNIVGMIEEEKDADDFK 730
|
250
....*....|
gi 568994927 603 DQWKPLNLEE 612
Cdd:TIGR00600 731 NEWQDISLEE 740
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MIF4G |
pfam02854 |
MIF4G domain; MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). ... |
765-993 |
2.59e-63 |
|
MIF4G domain; MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA.
Pssm-ID: 397130 Cd Length: 203 Bit Score: 214.15 E-value: 2.59e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 765 FRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMAlkvpttekpTVTVNFR 844
Cdd:pfam02854 1 LKKVKGILNKLSPENFEKLIKELLKLIMSDPELLKYLIELIFEKAVEEPNFIPAYARLCSGLNL---------RNPTDFG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 845 KLLLNRCQKEFEKdkdddevfekkqkemdeaataeergrlKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCV 924
Cdd:pfam02854 72 IHLLNRLQEEFEK---------------------------RFELEENEQGNRRRRLGLVRFLGELYKFGLLTEKILFECL 124
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568994927 925 VKLLKNH-------DEESLECLCRLLTTIGKDLDFAKAKPRMDQYFNQMEKII---KEKKTSSRIRFMLQDVLDLRQSN 993
Cdd:pfam02854 125 KELLSSLtkedlkrDLFNLECLLTLLTTIGKLLENEKLPKLMDQFLDEIQKYVlskDDPKLSSRLRFMLQDLIELRKNK 203
|
|
| W2_eIF4G1_like |
cd11559 |
C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar ... |
1441-1570 |
5.46e-55 |
|
C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins; eIF4G1 is a component of the multi-subunit eukaryotic translation initiation factor 4F, which facilitates recruitment of the mRNA to the ribosome, a rate-limiting step during translation initiation. This C-terminal domain, whose structure resembles that of a set of concatenated HEAT repeats, has been associated with binding to/recruiting the kinase Mnk1, which phosphorylates eIF4E.
Pssm-ID: 211397 Cd Length: 134 Bit Score: 187.49 E-value: 5.46e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1441 EELRRQLEKLLKDGGSNQRVFDWIDANLNEQQIASNTLVRALMTTVCYSAIIFETPLRVDVQVLKVRARLLQKYLC-DEQ 1519
Cdd:cd11559 4 LRVQAELLKLLQEDPNPDELYKWIKENVSPELYASPGFVRALMTAVLKYAIEEKSLPEKEKALLEKYAPLLQKYLDdDEQ 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 568994927 1520 KELQALYALQALVVTLEQPANLLRMFFDALYDEDVVKEDAFYSWESSKDPA 1570
Cdd:cd11559 84 LQLQALYALQALVHTLEFPKGLLLRFFDALYDEDVIEEEAFLKWKEDVDPA 134
|
|
| MIF4G |
smart00543 |
Middle domain of eukaryotic initiation factor 4G (eIF4G); Also occurs in NMD2p and CBP80. The ... |
766-993 |
7.61e-53 |
|
Middle domain of eukaryotic initiation factor 4G (eIF4G); Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Pssm-ID: 214713 Cd Length: 200 Bit Score: 184.10 E-value: 7.61e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 766 RRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMAlKVPttekptvtvNFRK 845
Cdd:smart00543 2 KKVKGLINKLSPSNFESIIKELLKLNNSDKNLRKYILELIFEKAVEEPNFIPAYARLCALLNA-KNP---------DFGS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 846 LLLNRCQKEFEKDkdddevfekkqkemdeaataeergrlkeeLEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVV 925
Cdd:smart00543 72 LLLERLQEEFEKG-----------------------------LESEEESDKQRRLGLVRFLGELYNFQVLTSKIILELLK 122
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568994927 926 KLLKNH-------DEESLECLCRLLTTIGKDLDFAKAKPRMDQYFNQMEKIIKEKKT---SSRIRFMLQDVLDLRQSN 993
Cdd:smart00543 123 ELLNDLtkldpprSDFSVECLLSLLPTCGKDLEREKSPKLLDEILERLQDYLLKKDKtelSSRLRFMLELLIELRKNK 200
|
|
| MA3 |
pfam02847 |
MA3 domain; Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain ... |
1242-1354 |
5.04e-35 |
|
MA3 domain; Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains.
Pssm-ID: 397128 Cd Length: 113 Bit Score: 129.70 E-value: 5.04e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1242 VEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRLGIESTLERSTIAREHMGRLLHQLLCAGHLSTAQYYQGLYE 1321
Cdd:pfam02847 1 LKRKIFLILEEYLSSGDYDEAARCLLKLGLPSQHHEVVKVLIECALEESKTYREFYGLLLERLCEFNLISTKQFEKGFWR 80
|
90 100 110
....*....|....*....|....*....|...
gi 568994927 1322 TLELAEDMEIDIPHVWLYLAELITPILQEDGVP 1354
Cdd:pfam02847 81 VLEDLEDLELDIPNAWRNLAEFVARLISDDGLP 113
|
|
| MA3 |
smart00544 |
Domain in DAP-5, eIF4G, MA-3 and other proteins; Highly alpha-helical. May contain repeats and ... |
1242-1354 |
2.65e-34 |
|
Domain in DAP-5, eIF4G, MA-3 and other proteins; Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Pssm-ID: 214714 Cd Length: 113 Bit Score: 127.75 E-value: 2.65e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1242 VEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRLGIESTLERSTIAREHMGRLLHQLLCAGHLSTAQYYQGLYE 1321
Cdd:smart00544 1 LKKKIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWR 80
|
90 100 110
....*....|....*....|....*....|...
gi 568994927 1322 TLELAEDMEIDIPHVWLYLAELITPILQEDGVP 1354
Cdd:smart00544 81 LLEDIEDLELDIPNAWRNLAEFVARLISDGILP 113
|
|
| eIF5C |
smart00515 |
Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5; |
1510-1592 |
2.06e-27 |
|
Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5;
Pssm-ID: 214705 Cd Length: 83 Bit Score: 106.99 E-value: 2.06e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1510 LLQKYLCDEQKELQALYALQALVVTLEQPANLLRMFFDALYDEDVVKEDAFYSWESSKDPAEqqGKGVALKSVTAFFNWL 1589
Cdd:smart00515 3 LLKFLAKDEEEQLELLYAIEEFCVELEKLGKLLPKILKSLYDADILEEEAILKWYEKAVSAE--GKKKVRKNAKPFVTWL 80
|
...
gi 568994927 1590 REA 1592
Cdd:smart00515 81 QEA 83
|
|
| W2 |
pfam02020 |
eIF4-gamma/eIF5/eIF2-epsilon; This domain of unknown function is found at the C-terminus of ... |
1521-1597 |
3.57e-23 |
|
eIF4-gamma/eIF5/eIF2-epsilon; This domain of unknown function is found at the C-terminus of several translation initiation factors.
Pssm-ID: 460415 Cd Length: 76 Bit Score: 94.52 E-value: 3.57e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568994927 1521 ELQALYALQALVVTLEQPANLLRMFFDALYDEDVVKEDAFYSWESSKDPAEqQGKGVALKSVTAFFNWLREAEDEES 1597
Cdd:pfam02020 1 QVDLLLALQEFCAKLEELLKLLLKILKALYDLDIVEEEAILKWWEDVSSAE-KGMKKVRKQAKPFVEWLEEAEEESD 76
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
4-463 |
1.36e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 63.42 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 4 APQPTGPPPARSPGLPQPAFPPGQTAPVVFSTPQATQMNTPS-----------QPRQGGF-RSLQHFYPSRA---QPPSS 68
Cdd:PHA03247 2477 APVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAilpdepvgepvHPRMLTWiRGLEELASDDAgdpPPPLP 2556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 69 AASRVQSAAPARPGPAPHVYPAGSQVMMIPSQISYSASQGAYYIPGQGRSTYVVPTQQYPVQPGAPGFYPGA-SPTEFGT 147
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPpSPSPAAN 2636
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 148 YAGAYYPAQGVQQFPASVAPAPVLMNQPPQIapKRERKTIRIRDPNQGGKDITEEIMSGARTASTPTPPQtGGSLEPQPN 227
Cdd:PHA03247 2637 EPDPHPPPTVPPPERPRDDPAPGRVSRPRRA--RRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP-PPTPEPAPH 2713
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 228 GESPqvAVIIRPDDRSQGAAIGGRPGLPGPEHSPGTESQPSSPSPTPSPPPILEPGSESNLGVLSIPGDTMTTGMIPMSV 307
Cdd:PHA03247 2714 ALVS--ATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 308 EESTPISCETGEPyclSPEPTLAEPILEVEVTLSKPIPESEFSSSPLQVSTALVPHKVETHEPNG--VIPSEDLE---PE 382
Cdd:PHA03247 2792 SESRESLPSPWDP---ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsVAPGGDVRrrpPS 2868
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 383 VESSTEPAPPPLSPCASESLVPIAPTAQPEELLNGAPSPPavdlsPVSEPEEQAKKVSSAALASILSPAPPVAPSDTSPA 462
Cdd:PHA03247 2869 RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP-----PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPL 2943
|
.
gi 568994927 463 Q 463
Cdd:PHA03247 2944 A 2944
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
3-179 |
5.63e-05 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 48.11 E-value: 5.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 3 KAPQPTGPPPARSPGLPQPAFPPGQTAPVVFSTPQATQMNTPSQPRQGGFRSLQHFYPSRAQPPSSAASRVQSAAPARPG 82
Cdd:pfam09770 206 QAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQA 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 83 PAPHVYPAgsQVMMIPSQIsysasqgayyipgqgrstyvvpTQQYPVQPGAPGFYPGAsptefGTYAGAYYPAQGVQQFP 162
Cdd:pfam09770 286 QQFHQQPP--PVPVQPTQI----------------------LQNPNRLSAARVGYPQN-----PQPGVQPAPAHQAHRQQ 336
|
170
....*....|....*..
gi 568994927 163 ASVAPAPVLMNQPPQIA 179
Cdd:pfam09770 337 GSFGRQAPIITHPQQLA 353
|
|
| rad2 |
TIGR00600 |
DNA excision repair protein (rad2); All proteins in this family for which functions are known ... |
373-612 |
1.36e-03 |
|
DNA excision repair protein (rad2); All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273166 [Multi-domain] Cd Length: 1034 Bit Score: 43.35 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 373 VIPSEDlEPEVESSTEPAPPPLSpCASESLVPIAPTAQPEELLNG-APSPPAVDLSPVSepeeqakkvSSAALASILSPA 451
Cdd:TIGR00600 520 VKPVSS-EFGLPSQREDKLAIPT-EGTQNLQGISDHPEQFEFQNElSPLETKNNESNLS---------SDAETEGSPNPE 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 452 PPVAPSDTSPAQEEEMEEDDDDEeggeaesekGGEDV--PLDSTPVpaqlSQNLEVAAAtQVAVSVPKRRRKIkELNKKE 529
Cdd:TIGR00600 589 MPSWSSVTVPSEALDNYETTNPS---------NAKEVrnFAETGIQ----TTNVGESAD-LLLISNPMEVEPM-ESEKEE 653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 530 AVGDllDAFKEVDPAVPEVENQPPTGSNPSPESE-------GSMVPTQPEETEEtWDSKEDKIHNAENIQPGEQKYEYKS 602
Cdd:TIGR00600 654 SESD--GSFIEVDSVSSTLELQVPSKSQPTDESEenaenkvASIEGEHRKEIED-LLFDESEEDNIVGMIEEEKDADDFK 730
|
250
....*....|
gi 568994927 603 DQWKPLNLEE 612
Cdd:TIGR00600 731 NEWQDISLEE 740
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MIF4G |
pfam02854 |
MIF4G domain; MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). ... |
765-993 |
2.59e-63 |
|
MIF4G domain; MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA.
Pssm-ID: 397130 Cd Length: 203 Bit Score: 214.15 E-value: 2.59e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 765 FRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMAlkvpttekpTVTVNFR 844
Cdd:pfam02854 1 LKKVKGILNKLSPENFEKLIKELLKLIMSDPELLKYLIELIFEKAVEEPNFIPAYARLCSGLNL---------RNPTDFG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 845 KLLLNRCQKEFEKdkdddevfekkqkemdeaataeergrlKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCV 924
Cdd:pfam02854 72 IHLLNRLQEEFEK---------------------------RFELEENEQGNRRRRLGLVRFLGELYKFGLLTEKILFECL 124
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568994927 925 VKLLKNH-------DEESLECLCRLLTTIGKDLDFAKAKPRMDQYFNQMEKII---KEKKTSSRIRFMLQDVLDLRQSN 993
Cdd:pfam02854 125 KELLSSLtkedlkrDLFNLECLLTLLTTIGKLLENEKLPKLMDQFLDEIQKYVlskDDPKLSSRLRFMLQDLIELRKNK 203
|
|
| W2_eIF4G1_like |
cd11559 |
C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar ... |
1441-1570 |
5.46e-55 |
|
C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins; eIF4G1 is a component of the multi-subunit eukaryotic translation initiation factor 4F, which facilitates recruitment of the mRNA to the ribosome, a rate-limiting step during translation initiation. This C-terminal domain, whose structure resembles that of a set of concatenated HEAT repeats, has been associated with binding to/recruiting the kinase Mnk1, which phosphorylates eIF4E.
Pssm-ID: 211397 Cd Length: 134 Bit Score: 187.49 E-value: 5.46e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1441 EELRRQLEKLLKDGGSNQRVFDWIDANLNEQQIASNTLVRALMTTVCYSAIIFETPLRVDVQVLKVRARLLQKYLC-DEQ 1519
Cdd:cd11559 4 LRVQAELLKLLQEDPNPDELYKWIKENVSPELYASPGFVRALMTAVLKYAIEEKSLPEKEKALLEKYAPLLQKYLDdDEQ 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 568994927 1520 KELQALYALQALVVTLEQPANLLRMFFDALYDEDVVKEDAFYSWESSKDPA 1570
Cdd:cd11559 84 LQLQALYALQALVHTLEFPKGLLLRFFDALYDEDVIEEEAFLKWKEDVDPA 134
|
|
| MIF4G |
smart00543 |
Middle domain of eukaryotic initiation factor 4G (eIF4G); Also occurs in NMD2p and CBP80. The ... |
766-993 |
7.61e-53 |
|
Middle domain of eukaryotic initiation factor 4G (eIF4G); Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Pssm-ID: 214713 Cd Length: 200 Bit Score: 184.10 E-value: 7.61e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 766 RRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMAlKVPttekptvtvNFRK 845
Cdd:smart00543 2 KKVKGLINKLSPSNFESIIKELLKLNNSDKNLRKYILELIFEKAVEEPNFIPAYARLCALLNA-KNP---------DFGS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 846 LLLNRCQKEFEKDkdddevfekkqkemdeaataeergrlkeeLEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVV 925
Cdd:smart00543 72 LLLERLQEEFEKG-----------------------------LESEEESDKQRRLGLVRFLGELYNFQVLTSKIILELLK 122
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568994927 926 KLLKNH-------DEESLECLCRLLTTIGKDLDFAKAKPRMDQYFNQMEKIIKEKKT---SSRIRFMLQDVLDLRQSN 993
Cdd:smart00543 123 ELLNDLtkldpprSDFSVECLLSLLPTCGKDLEREKSPKLLDEILERLQDYLLKKDKtelSSRLRFMLELLIELRKNK 200
|
|
| MA3 |
pfam02847 |
MA3 domain; Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain ... |
1242-1354 |
5.04e-35 |
|
MA3 domain; Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains.
Pssm-ID: 397128 Cd Length: 113 Bit Score: 129.70 E-value: 5.04e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1242 VEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRLGIESTLERSTIAREHMGRLLHQLLCAGHLSTAQYYQGLYE 1321
Cdd:pfam02847 1 LKRKIFLILEEYLSSGDYDEAARCLLKLGLPSQHHEVVKVLIECALEESKTYREFYGLLLERLCEFNLISTKQFEKGFWR 80
|
90 100 110
....*....|....*....|....*....|...
gi 568994927 1322 TLELAEDMEIDIPHVWLYLAELITPILQEDGVP 1354
Cdd:pfam02847 81 VLEDLEDLELDIPNAWRNLAEFVARLISDDGLP 113
|
|
| MA3 |
smart00544 |
Domain in DAP-5, eIF4G, MA-3 and other proteins; Highly alpha-helical. May contain repeats and ... |
1242-1354 |
2.65e-34 |
|
Domain in DAP-5, eIF4G, MA-3 and other proteins; Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Pssm-ID: 214714 Cd Length: 113 Bit Score: 127.75 E-value: 2.65e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1242 VEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRLGIESTLERSTIAREHMGRLLHQLLCAGHLSTAQYYQGLYE 1321
Cdd:smart00544 1 LKKKIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWR 80
|
90 100 110
....*....|....*....|....*....|...
gi 568994927 1322 TLELAEDMEIDIPHVWLYLAELITPILQEDGVP 1354
Cdd:smart00544 81 LLEDIEDLELDIPNAWRNLAEFVARLISDGILP 113
|
|
| eIF5C |
smart00515 |
Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5; |
1510-1592 |
2.06e-27 |
|
Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5;
Pssm-ID: 214705 Cd Length: 83 Bit Score: 106.99 E-value: 2.06e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1510 LLQKYLCDEQKELQALYALQALVVTLEQPANLLRMFFDALYDEDVVKEDAFYSWESSKDPAEqqGKGVALKSVTAFFNWL 1589
Cdd:smart00515 3 LLKFLAKDEEEQLELLYAIEEFCVELEKLGKLLPKILKSLYDADILEEEAILKWYEKAVSAE--GKKKVRKNAKPFVTWL 80
|
...
gi 568994927 1590 REA 1592
Cdd:smart00515 81 QEA 83
|
|
| W2 |
pfam02020 |
eIF4-gamma/eIF5/eIF2-epsilon; This domain of unknown function is found at the C-terminus of ... |
1521-1597 |
3.57e-23 |
|
eIF4-gamma/eIF5/eIF2-epsilon; This domain of unknown function is found at the C-terminus of several translation initiation factors.
Pssm-ID: 460415 Cd Length: 76 Bit Score: 94.52 E-value: 3.57e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568994927 1521 ELQALYALQALVVTLEQPANLLRMFFDALYDEDVVKEDAFYSWESSKDPAEqQGKGVALKSVTAFFNWLREAEDEES 1597
Cdd:pfam02020 1 QVDLLLALQEFCAKLEELLKLLLKILKALYDLDIVEEEAILKWWEDVSSAE-KGMKKVRKQAKPFVEWLEEAEEESD 76
|
|
| W2 |
cd11473 |
C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon; This domain is found at the C-terminus of ... |
1441-1564 |
2.42e-19 |
|
C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon; This domain is found at the C-terminus of several translation initiation factors, including the epsilon chain of eIF2b, where it has been found to catalyze the conversion of eIF2.GDP to its active eIF2.GTP form. The structure of the domain resembles that of a set of concatenated HEAT repeats.
Pssm-ID: 211395 Cd Length: 135 Bit Score: 85.61 E-value: 2.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1441 EELRRQLEKLLK-DGGSNQRVFDWIDANLNEQQIASNTLVRALMTTVCYSAIIFE----TPLRVDVQVLKVRARLLQKYL 1515
Cdd:cd11473 4 KKLRDSLLKELEeDKSSDVESVKAAKSKLDLDPISLEEVVKVLLTAVVNAVESADsislTQKEQLVLVLKKYGPVLRELL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568994927 1516 CD-EQKELQALYALQALVVT--LEQPANLLRMFFDALYDEDVVKEDAFYSWE 1564
Cdd:cd11473 84 KLiKKDQLYLLLKIEKLCLQlkLSELISLLEKILDLLYDADVLSEEAILSWF 135
|
|
| W2_eIF2B_epsilon |
cd11558 |
C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon; eIF2B is a ... |
1510-1597 |
1.10e-13 |
|
C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon; eIF2B is a heteropentameric complex which functions as a guanine nucleotide exchange factor in the recycling of eIF-2 during the initiation of translation in eukaryotes. The epsilon and gamma subunits are sequence similar and both are essential in yeast. Epsilon appears to be the catalytically active subunit, with gamma enhancing its activity. The C-terminal domain of the eIF2B epsilon subunit contains bipartite motifs rich in acidic and aromatic residues, which are responsible for the interaction with eIF2. The structure of the domain resembles that of a set of concatenated HEAT repeats.
Pssm-ID: 211396 Cd Length: 169 Bit Score: 70.75 E-value: 1.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1510 LLQKYLCDEQKELQALYALQALVVTLEQPANLLRMFFDALYDEDVVKEDAFYSWESSKDPAEQQGKGVALKSVTAFFNWL 1589
Cdd:cd11558 82 LLENYVKSQDDQVELLLALEEFCLESEEGGPLFAKLLHALYDLDILEEEAILEWWEEPDAGADEEMKKVRELVKKFIEWL 161
|
....*...
gi 568994927 1590 REAEDEES 1597
Cdd:cd11558 162 EEAEEESD 169
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
4-463 |
1.36e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 63.42 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 4 APQPTGPPPARSPGLPQPAFPPGQTAPVVFSTPQATQMNTPS-----------QPRQGGF-RSLQHFYPSRA---QPPSS 68
Cdd:PHA03247 2477 APVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAilpdepvgepvHPRMLTWiRGLEELASDDAgdpPPPLP 2556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 69 AASRVQSAAPARPGPAPHVYPAGSQVMMIPSQISYSASQGAYYIPGQGRSTYVVPTQQYPVQPGAPGFYPGA-SPTEFGT 147
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPpSPSPAAN 2636
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 148 YAGAYYPAQGVQQFPASVAPAPVLMNQPPQIapKRERKTIRIRDPNQGGKDITEEIMSGARTASTPTPPQtGGSLEPQPN 227
Cdd:PHA03247 2637 EPDPHPPPTVPPPERPRDDPAPGRVSRPRRA--RRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP-PPTPEPAPH 2713
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 228 GESPqvAVIIRPDDRSQGAAIGGRPGLPGPEHSPGTESQPSSPSPTPSPPPILEPGSESNLGVLSIPGDTMTTGMIPMSV 307
Cdd:PHA03247 2714 ALVS--ATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 308 EESTPISCETGEPyclSPEPTLAEPILEVEVTLSKPIPESEFSSSPLQVSTALVPHKVETHEPNG--VIPSEDLE---PE 382
Cdd:PHA03247 2792 SESRESLPSPWDP---ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsVAPGGDVRrrpPS 2868
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 383 VESSTEPAPPPLSPCASESLVPIAPTAQPEELLNGAPSPPavdlsPVSEPEEQAKKVSSAALASILSPAPPVAPSDTSPA 462
Cdd:PHA03247 2869 RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP-----PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPL 2943
|
.
gi 568994927 463 Q 463
Cdd:PHA03247 2944 A 2944
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
5-360 |
6.92e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 58.03 E-value: 6.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 5 PQPTGPPPARSPGLPQP--------AFPPGQTAPVVFSTPQATQmnTPSQPRQGGFRslqhfyPSRAQPPSSAASRVQSA 76
Cdd:PHA03247 2706 PTPEPAPHALVSATPLPpgpaaarqASPALPAAPAPPAVPAGPA--TPGGPARPARP------PTTAGPPAPAPPAAPAA 2777
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 77 APARPGPAPHVYPAGSQVMMIPSQISYSASQGAYYIPGQGRSTYVVPTQQYP----VQPGAPGFYPGASPTEFgTYAGAY 152
Cdd:PHA03247 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPpptsAQPTAPPPPPGPPPPSL-PLGGSV 2856
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 153 YPAQGVQQFPASVAPAPVL----------MNQP-------PQIAPKRERKTIRIRDPNQGGKDITEEIMSGARTASTPTP 215
Cdd:PHA03247 2857 APGGDVRRRPPSRSPAAKPaaparppvrrLARPavsrsteSFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP 2936
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 216 PQTGGSLEPQPNGESPQVAVIIRPDDRSqGAAIGGR------------PGLPGPEHSPGTESQPSSPSPTPSPPPIL--- 280
Cdd:PHA03247 2937 PRPQPPLAPTTDPAGAGEPSGAVPQPWL-GALVPGRvavprfrvpqpaPSREAPASSTPPLTGHSLSRVSSWASSLAlhe 3015
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 281 --EPGSESNLGVLSIPGDtmTTGMIPMSVEESTPISCETGEPYCLSPEPTLA---EPILEVEVTLSKPIPESEFSSSPLQ 355
Cdd:PHA03247 3016 etDPPPVSLKQTLWPPDD--TEDSDADSLFDSDSERSDLEALDPLPPEPHDPfahEPDPATPEAGARESPSSQFGPPPLS 3093
|
....*
gi 568994927 356 VSTAL 360
Cdd:PHA03247 3094 ANAAL 3098
|
|
| W2_eIF5 |
cd11561 |
C-terminal W2 domain of eukaryotic translation initiation factor 5; eIF5 functions as a GTPase ... |
1439-1597 |
2.92e-07 |
|
C-terminal W2 domain of eukaryotic translation initiation factor 5; eIF5 functions as a GTPase acceleration protein (GAP), as well as a GDP dissociation inhibitor (GDI) during translational initiation in eukaryotes. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats.
Pssm-ID: 211399 Cd Length: 157 Bit Score: 51.85 E-value: 2.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1439 AFEELRRQLEKLLKDGGSNQrvfdwIDANLNEQQIASNTLVRALmttvcysAIIFETPLRVD-VQVLKVRARLLQKYLCD 1517
Cdd:cd11561 7 RVDELGEFLKKNKDESGLSE-----LKEILKEAERLDVVKDKAV-------LVLAEVLFDENiVKEIKKRKALLLKLVTD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1518 EQKELQALYALQALVVtlEQPANLLRMF---FDALYDEDVVKEDAFYSW---ESSKDPAEQQGKGVaLKSVTAFFNWLRE 1591
Cdd:cd11561 75 EKAQKALLGGIERFCG--KHSPELLKKVpliLKALYDNDILEEEVILKWyekVSKKYVSKEKSKKV-RKAAEPFVEWLEE 151
|
....*.
gi 568994927 1592 AEDEES 1597
Cdd:cd11561 152 AEEEEE 157
|
|
| W2_eIF5C_like |
cd11560 |
C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins; ... |
1435-1595 |
2.05e-06 |
|
C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins; eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats.
Pssm-ID: 211398 [Multi-domain] Cd Length: 194 Bit Score: 49.90 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1435 QRTLAFEELRRQLEKLLKDGGSNQRVFDWIDANLNEQQIASN--------TLVRALMTTVCYSA---IIFETPLRVdvqv 1503
Cdd:cd11560 29 YRKQASQEIKKELQQELKEMIAEEEPVKEIIAAVKEQMKKSSlpehevvgLLWTALMDAVEWSKkedQIAEQALRH---- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1504 LKVRARLLQKYLCDEQKELQALYALQalVVTLEQpANLLRMFFD---ALYDEDVVKEDAFYSWesSKDPAEQQGKGVALK 1580
Cdd:cd11560 105 LKKYAPLLAAFCTTARAELALLNKIQ--EYCYEN-MKFMKVFQKivkLLYKADVLSEDAILKW--YKKGHSPKGKQVFLK 179
|
170
....*....|....*
gi 568994927 1581 SVTAFFNWLREAEDE 1595
Cdd:cd11560 180 QMEPFVEWLQEAEEE 194
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
5-570 |
1.70e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.94 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 5 PQPTGPPPARSPglpqPAFPPGQTAPVVFSTPQATQMNTPSQPRQGGFRSlqhfyPSRAQPPSSAASRVQSAAPARPgpa 84
Cdd:PHA03247 2612 APPSPLPPDTHA----PDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA-----PGRVSRPRRARRLGRAAQASSP--- 2679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 85 phvyPAGSQVMMIPSQIsysASQGAYYIPgqgrstyvvPTQQYPVQPGAPGFYPGASPTEFGTYAGAYYPAQGVQQFPAS 164
Cdd:PHA03247 2680 ----PQRPRRRAARPTV---GSLTSLADP---------PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPA 2743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 165 VAPAPVLmnqPPQIAPKRERKTirirdpnqggkditeeiMSGARTASTPTPPQTGgslePQPNGESPQVAviirpddrSQ 244
Cdd:PHA03247 2744 VPAGPAT---PGGPARPARPPT-----------------TAGPPAPAPPAAPAAG----PPRRLTRPAVA--------SL 2791
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 245 GAAIGGRPGLPGPEHSPGTESQPSSPSPTPSPPPILEPGSESNLGVLSIPGdtmttgmiPMSVEESTPI--SCETGEPYC 322
Cdd:PHA03247 2792 SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP--------PGPPPPSLPLggSVAPGGDVR 2863
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 323 LSPEPTLAEPilevEVTLSKPIPESEFSSSPLQVSTALVPHKVETHEPngvipsedlEPEVESSTEPAPPPLSPCASESL 402
Cdd:PHA03247 2864 RRPPSRSPAA----KPAAPARPPVRRLARPAVSRSTESFALPPDQPER---------PPQPQAPPPPQPQPQPPPPPQPQ 2930
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 403 VPIAPTAQPEellngAPSPPAVDLSPVSEPEEQAKKVSSAALASILSPA-----PPVAPSDTSPAQEEEMEEDDDDEEGG 477
Cdd:PHA03247 2931 PPPPPPPRPQ-----PPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVprfrvPQPAPSREAPASSTPPLTGHSLSRVS 3005
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 478 EAESEKGgedVPLDSTPVPAQLSQNLEVAAATQVAvSVPKRRRKIKELNKKEAVgDLLDAFKEVDPAVPEVENQPPTGSN 557
Cdd:PHA03247 3006 SWASSLA---LHEETDPPPVSLKQTLWPPDDTEDS-DADSLFDSDSERSDLEAL-DPLPPEPHDPFAHEPDPATPEAGAR 3080
|
570
....*....|...
gi 568994927 558 PSPESEGSMVPTQ 570
Cdd:PHA03247 3081 ESPSSQFGPPPLS 3093
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
3-179 |
5.63e-05 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 48.11 E-value: 5.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 3 KAPQPTGPPPARSPGLPQPAFPPGQTAPVVFSTPQATQMNTPSQPRQGGFRSLQHFYPSRAQPPSSAASRVQSAAPARPG 82
Cdd:pfam09770 206 QAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQA 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 83 PAPHVYPAgsQVMMIPSQIsysasqgayyipgqgrstyvvpTQQYPVQPGAPGFYPGAsptefGTYAGAYYPAQGVQQFP 162
Cdd:pfam09770 286 QQFHQQPP--PVPVQPTQI----------------------LQNPNRLSAARVGYPQN-----PQPGVQPAPAHQAHRQQ 336
|
170
....*....|....*..
gi 568994927 163 ASVAPAPVLMNQPPQIA 179
Cdd:pfam09770 337 GSFGRQAPIITHPQQLA 353
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
203-462 |
1.81e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 46.45 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 203 IMSGARTASTPTPPQTGGSLEPQPNGESPQVaviirpdDRSQGAAIGGRPGLPGPEHSPGTESQPSSPSPTPSPPPILEP 282
Cdd:pfam05109 404 IITRTATNATTTTHKVIFSKAPESTTTSPTL-------NTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 283 ---GSESNLGVLS---IPGDTMTTGMIPMSVEESTPISCETgePYCLSPEPTLAEPILE-VEVTLSKPIPESEFsSSPLQ 355
Cdd:pfam05109 477 tpaGTTSGASPVTpspSPRDNGTESKAPDMTSPTSAVTTPT--PNATSPTPAVTTPTPNaTSPTLGKTSPTSAV-TTPTP 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 356 VSTALVPhKVETHEPNGVIPSEDLEPEVESSTEPAPPPLSPCASESlVPIAPTAQpeELLNGAPSPPAVDLSP---VSEP 432
Cdd:pfam05109 554 NATSPTP-AVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGET-SPQANTTN--HTLGGTSSTPVVTSPPknaTSAV 629
|
250 260 270
....*....|....*....|....*....|
gi 568994927 433 EEQAKKVSSAALASiLSPAPPVAPSDTSPA 462
Cdd:pfam05109 630 TTGQHNITSSSTSS-MSLRPSSISETLSPS 658
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
162-575 |
7.30e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.54 E-value: 7.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 162 PASVAPAPVLMNQPPQIAPK--------RERKTIRIRDPNQGGKDITEEIMSGARTASTPTPPQTGgSLEPQPNGESPqv 233
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRpsepavtsRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTH-APDPPPPSPSP-- 2633
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 234 aviirpddRSQGAAIGGRPGLPGPEHSPGTESQPSSPSPTPSPPPILEPGSESNLGVLSIPGDTMTTGMIPMSVEESTPi 313
Cdd:PHA03247 2634 --------AANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP- 2704
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 314 scetgEPyclSPEPTlaePILEVEVTLSKPIPESEFSSSPLQVSTALVPHKVETHEPNGVIPSEDLEPEVESSTEPAPPP 393
Cdd:PHA03247 2705 -----PP---TPEPA---PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPA 2773
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 394 LSPCASESLVPIAPTAQPEELLNGAPSPPAVDLSPVSEPEeqakkvSSAALASILSPAPPVAPSDTS-PAQEEEMEEDDD 472
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA------PAAALPPAASPAGPLPPPTSAqPTAPPPPPGPPP 2847
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 473 DEEGGEAESEKGGedvPLDSTPVPAQlsqnlevAAATQVAVSVPKRRRKikelnKKEAVGDLLDAFKE-VDPAVPEVENQ 551
Cdd:PHA03247 2848 PSLPLGGSVAPGG---DVRRRPPSRS-------PAAKPAAPARPPVRRL-----ARPAVSRSTESFALpPDQPERPPQPQ 2912
|
410 420
....*....|....*....|....
gi 568994927 552 PPTGSNPSPESEGSMVPTQPEETE 575
Cdd:PHA03247 2913 APPPPQPQPQPPPPPQPQPPPPPP 2936
|
|
| rad2 |
TIGR00600 |
DNA excision repair protein (rad2); All proteins in this family for which functions are known ... |
373-612 |
1.36e-03 |
|
DNA excision repair protein (rad2); All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273166 [Multi-domain] Cd Length: 1034 Bit Score: 43.35 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 373 VIPSEDlEPEVESSTEPAPPPLSpCASESLVPIAPTAQPEELLNG-APSPPAVDLSPVSepeeqakkvSSAALASILSPA 451
Cdd:TIGR00600 520 VKPVSS-EFGLPSQREDKLAIPT-EGTQNLQGISDHPEQFEFQNElSPLETKNNESNLS---------SDAETEGSPNPE 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 452 PPVAPSDTSPAQEEEMEEDDDDEeggeaesekGGEDV--PLDSTPVpaqlSQNLEVAAAtQVAVSVPKRRRKIkELNKKE 529
Cdd:TIGR00600 589 MPSWSSVTVPSEALDNYETTNPS---------NAKEVrnFAETGIQ----TTNVGESAD-LLLISNPMEVEPM-ESEKEE 653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 530 AVGDllDAFKEVDPAVPEVENQPPTGSNPSPESE-------GSMVPTQPEETEEtWDSKEDKIHNAENIQPGEQKYEYKS 602
Cdd:TIGR00600 654 SESD--GSFIEVDSVSSTLELQVPSKSQPTDESEenaenkvASIEGEHRKEIED-LLFDESEEDNIVGMIEEEKDADDFK 730
|
250
....*....|
gi 568994927 603 DQWKPLNLEE 612
Cdd:TIGR00600 731 NEWQDISLEE 740
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
4-208 |
1.98e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.05 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 4 APQPTGPPPARSPGLPQPAFPPGQ----------TAPVVFSTPQATQMNTPSQPRQGGFRSLQHFYPSRAQPPSSAASRV 73
Cdd:PRK07764 612 AARPAAPAAPAAPAAPAPAGAAAApaeasaapapGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 74 QSAAPARPGPAPHVyPAGSQVMMIPSQISYSASQGAYYIPGQGRSTYVVPTQQYPVQPGAPGFYPGASPTEFGTYAGayy 153
Cdd:PRK07764 692 APAGAAPAQPAPAP-AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPA--- 767
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568994927 154 PAQGVQQFPASVAPAPVLMNQPPQIAPKRERktiriRDPNQGGKDITEEIMsGAR 208
Cdd:PRK07764 768 AAPAAAPPPSPPSEEEEMAEDDAPSMDDEDR-----RDAEEVAMELLEEEL-GAK 816
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
327-487 |
4.04e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 42.00 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 327 PTLAEPILEVEVTLSKPIPESEFSSSPLQV-STALVPHKVETHEPNGVIPSEDLEP---EVESSTEPAPPPLSPCASESL 402
Cdd:PRK08691 380 PSAQTAEKETAAKKPQPRPEAETAQTPVQTaSAAAMPSEGKTAGPVSNQENNDVPPwedAPDEAQTAAGTAQTSAKSIQT 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 403 VPIAPTAQPEEL-------------LNGAPSPPAVDLSPVSEPEEQAKKVSSAalasilsPAPPVA----PSDTSPAQEE 465
Cdd:PRK08691 460 ASEAETPPENQVsknkaadnetdapLSEVPSENPIQATPNDEAVETETFAHEA-------PAEPFYgygfPDNDCPPEDG 532
|
170 180
....*....|....*....|..
gi 568994927 466 EMEEDDDDEEGGEAESEKGGED 487
Cdd:PRK08691 533 AEIPPPDWEHAAPADTAGGGAD 554
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
368-462 |
5.23e-03 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 38.95 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 368 HEPNGVIPseDLEPEVESSTEPAPPPLSPCASESLVPIAPTAQPEELLNGAPSPPAVDlSPVSEPEEQAKKVSSAALAsi 447
Cdd:pfam05104 44 EKPNGKLP--ESEQADESEEEPREFKTPDEAPSAALEPEPVPTPVPAPVEPEPAPPSE-SPAPSPKEKKKKEKKSAKV-- 118
|
90
....*....|....*
gi 568994927 448 lSPAPPVAPSDTSPA 462
Cdd:pfam05104 119 -EPAETPEAVQPKPA 132
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
346-462 |
8.08e-03 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 39.60 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 346 ESEFSSSPLqvstalVPHKVETHEPNGV---------IPSEDLEPEVESSTEPAPPPLSPCASESLVPIAPTAQPEElln 416
Cdd:PRK11633 35 QDEFAAIPL------VPKPGDRDEPDMMpaatqalptQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVE--- 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 568994927 417 gAPSPPavdlsPVSEPEEQAKKVSSAALASILSPAP-PVAPSDTSPA 462
Cdd:PRK11633 106 -PPKPK-----PVEKPKPKPKPQQKVEAPPAPKPEPkPVVEEKAAPT 146
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1-169 |
8.10e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 40.82 E-value: 8.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 1 MNKAPQPTGP--------------PPARSPGlpqPAFPPgQTAPVVFSTPQATQMNTPSQPRQGGFRSLQHFYPSRAQPP 66
Cdd:PHA03378 672 IPYQPSPTGAntmlpiqwapgtmqPPPRAPT---PMRPP-AAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPP 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994927 67 SSAASRVQSAAPARPGPAPHVYPAGSQVMMIPSQISYSASQGAYYIPGQGRSTYVVPTQQYPVQPGAPGFYPGASPTEFG 146
Cdd:PHA03378 748 AAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQ 827
|
170 180 190
....*....|....*....|....*....|.
gi 568994927 147 TYAGAY--------YPAQGVQQFPASVAPAP 169
Cdd:PHA03378 828 LLTGGVkrgrpslkKPAALERQAAAGPTPSP 858
|
|
| |
