|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
160-478 |
2.05e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.22 E-value: 2.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 160 ELKWEMEREEKKLL---WEQLQGLESSKQAETSRLQEELAKLSEKLKKKQEsfcRLQTEKETLfNDSRNKIEELQQRkEA 236
Cdd:COG1196 217 ELKEELKELEAELLllkLRELEAELEELEAELEELEAELEELEAELAELEA---ELEELRLEL-EELELELEEAQAE-EY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 237 DLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVssqsADAQEQVEGLLAENSALRTSLAALEQIQ 316
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 317 TAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 396
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 397 KVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVE 476
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
..
gi 569008856 477 EL 478
Cdd:COG1196 528 VL 529
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
260-604 |
1.33e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 1.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 260 AELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQH 339
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 340 RQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELG 419
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE-EALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 420 AVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEA 499
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 500 EESLQQQQQEQEETLKLcrEEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQevkdtVDGQRILEKKGSAVLK 579
Cdd:COG1196 459 EALLELLAELLEEAALL--EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-----LAGLRGLAGAVAVLIG 531
|
330 340
....*....|....*....|....*
gi 569008856 580 DLKRqlhLERKRADKLQERLQEILT 604
Cdd:COG1196 532 VEAA---YEAALEAALAAALQNIVV 553
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
161-688 |
1.57e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 1.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 161 LKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLsEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRK------ 234
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAEL-EELRLELEELELELEEAQAEEYELLAELARLEQDIarleer 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 235 ----EADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLA 310
Cdd:COG1196 311 rrelEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 311 ALEQIQTAKTQELNmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEAR 390
Cdd:COG1196 391 ALRAAAELAAQLEE-LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 391 KSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRH-------EKELLGVRARYERELRELHEDKKRQEEEL--RGQIREE 461
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvkAALLLAGLRGLAGAVAVLIGVEAAYEAALeaALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 462 KARTRELENLQHTVEELQAQvhsmDGAKGWFERRLKEAEESLQQQQQEQEETLKLcREEHAAELKGKDEELQNVREQL-- 539
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAA----KAGRATFLPLDKIRARAALAAALARGAIGAA-VDLVASDLREADARYYVLGDTLlg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 540 -QQAQEERDGHVKTISNLKQEVKD-TVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVL 617
Cdd:COG1196 625 rTLVAARLEAALRRAVTLAGRLREvTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008856 618 SEMNSPSRTQTGDSSSVSSFSYREILKEKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQE 688
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
161-490 |
8.47e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 8.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 161 LKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEkLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEAdLKA 240
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE-LRLEVSELEEEIEELQKELYALANEISRLEQQKQI-LRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 241 QLARtqkLQQELEAANQSLAELRDQRQgerlehaaALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKT 320
Cdd:TIGR02168 310 RLAN---LERQLEELEAQLEELESKLD--------ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 321 QELNMLReqtselaselqhrqAEYEELMGQKDDLNSQLQeslransRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvmL 400
Cdd:TIGR02168 379 EQLETLR--------------SKVAQLELQIASLNNEIE-------RLEARLERLEDRRERLQQEIEELLKKLEEAE--L 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 401 DELAMEtLQEKSQHKEELGAVRLRHEKELLGVRARYErELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQA 480
Cdd:TIGR02168 436 KELQAE-LEELEEELEELQEELERLEEALEELREELE-EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
330
....*....|
gi 569008856 481 QVHSMDGAKG 490
Cdd:TIGR02168 514 NQSGLSGILG 523
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
182-604 |
9.38e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 9.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 182 SSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL--FNDSRNKIEElqQRKEADLKAQLA-RTQKLQQELEAANQS 258
Cdd:TIGR02168 151 EAKPEERRAIFEEAAGISKYKERRKETERKLERTRENLdrLEDILNELER--QLKSLERQAEKAeRYKELKAELRELELA 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 259 LAELRDQRQGERLEhaaALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQ 338
Cdd:TIGR02168 229 LLVLRLEELREELE---ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 339 HRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvmldelamETLQEKSQHKEEL 418
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE--------AELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 419 gavrlrhEKELLGVRARYerelrelhEDKKRQEEELRGQIREEKARtreLENLQHTVEELQAQVhsmdgakgwfERRLKE 498
Cdd:TIGR02168 378 -------EEQLETLRSKV--------AQLELQIASLNNEIERLEAR---LERLEDRRERLQQEI----------EELLKK 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 499 AEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVl 578
Cdd:TIGR02168 430 LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV- 508
|
410 420
....*....|....*....|....*.
gi 569008856 579 kdlkRQLHLERKRADKLQERLQEILT 604
Cdd:TIGR02168 509 ----KALLKNQSGLSGILGVLSELIS 530
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
159-482 |
1.06e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 159 VELKWEMEREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQesfcRLQTEKETLFNDSRNKIEELQQRKEAdl 238
Cdd:TIGR02168 673 LERRREIEELEEKI--EELEEKIAELEKALAELRKELEELEEELEQLR----KELEELSRQISALRKDLARLEAEVEQ-- 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 239 kaQLARTQKLQQELEAANQSLAELRDQRQGERlEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTA 318
Cdd:TIGR02168 745 --LEERIAQLSKELTELEAEIEELEERLEEAE-EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 319 KTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKV 398
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 399 MLDEL---AMETLQEKSQHKEELGAVRLRHEKeLLGVRARYERELRELHEDkkrqeeELRGQIREEKARTRELENLQHTV 475
Cdd:TIGR02168 902 ELRELeskRSELRRELEELREKLAQLELRLEG-LEVRIDNLQERLSEEYSL------TLEEAEALENKIEDDEEEARRRL 974
|
....*..
gi 569008856 476 EELQAQV 482
Cdd:TIGR02168 975 KRLENKI 981
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
166-593 |
1.56e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.71 E-value: 1.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 166 EREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLAR- 244
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA-DEAKKKAEEKKKADEAKKKAEEAKk 1445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 245 ---TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQ 321
Cdd:PTZ00121 1446 adeAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 322 ELNMLREQTSelASELqhRQAEYEElmgQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR----- 396
Cdd:PTZ00121 1526 EAKKAEEAKK--ADEA--KKAEEKK---KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARieevm 1598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 397 KVMLDELAMETLQEKSQHKEELGAVRLRHEKEllgVRARYErELRELHEDKKRQEEELRGQIREEKARTRELENlqhtvE 476
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE---EKKKVE-QLKKKEAEEKKKAEELKKAEEENKIKAAEEAK-----K 1669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 477 ELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEH---AAELKGKDEELQNVREQLQQAQEE-------- 545
Cdd:PTZ00121 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEkkkAEELKKAEEENKIKAEEAKKEAEEdkkkaeea 1749
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 569008856 546 --RDGHVKTISNLKQEVKDTVDGQRileKKGSAVL------KDLKRQLHLERKRAD 593
Cdd:PTZ00121 1750 kkDEEEKKKIAHLKKEEEKKAEEIR---KEKEAVIeeeldeEDEKRRMEVDKKIKD 1802
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
168-582 |
4.60e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 4.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 168 EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESfCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQK 247
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE-AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 248 LQQELEAANQS--------LAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQvegllAENSALRTSlAALEQIQTAK 319
Cdd:PTZ00121 1520 EAKKADEAKKAeeakkadeAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE-----DKNMALRKA-EEAKKAEEAR 1593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 320 TQELNMLREQTSELASElQHRQAEYEELMGQK-------DDLNSQLQESLRANSRLLEQLQEigQEKEQLTQDLQEARKS 392
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEElkkaeeeKKKVEQLKKKEAEEKKKAEELKK--AEEENKIKAAEEAKKA 1670
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 393 AEKRKvmldelAMETLQEKSQHKEELGAVRLRHEKEllgvrARYERELRELHEDKKRQEEELRgqiREEKARTRELENLQ 472
Cdd:PTZ00121 1671 EEDKK------KAEEAKKAEEDEKKAAEALKKEAEE-----AKKAEELKKKEAEEKKKAEELK---KAEEENKIKAEEAK 1736
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 473 HTVEElqaqvhsmdgakgwfERRlKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELqnVREQLQQAQEERDGHV-K 551
Cdd:PTZ00121 1737 KEAEE---------------DKK-KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV--IEEELDEEDEKRRMEVdK 1798
|
410 420 430
....*....|....*....|....*....|.
gi 569008856 552 TISNLKQEVKDTVDGQrileKKGSAVLKDLK 582
Cdd:PTZ00121 1799 KIKDIFDNFANIIEGG----KEGNLVINDSK 1825
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
167-719 |
4.60e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 4.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 167 REEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESfcRLQTEKETLFNDSRNKIEELQQRKEADLK---AQLA 243
Cdd:PTZ00121 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKKKADAAKKKAEEAKKaaeAAKA 1350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 244 RTQKLQQELEAANQSlAELRDQRQGERLEHAAALRALQDQVsSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTqel 323
Cdd:PTZ00121 1351 EAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKAEEK-KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK--- 1425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 324 nmlREQTSELASELQHRQAEYEelmgQKDDLNSQLQESLRANSrlLEQLQEIGQEKEQLTQDLQEARKSAE-KRKVMLDE 402
Cdd:PTZ00121 1426 ---KAEEKKKADEAKKKAEEAK----KADEAKKKAEEAKKAEE--AKKKAEEAKKADEAKKKAEEAKKADEaKKKAEEAK 1496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 403 LAMETLQEKSQHKEELGAVRLRHEKellgvraRYERELRELHEdkKRQEEELRGQirEEKARTRELENlqhtVEELQA-- 480
Cdd:PTZ00121 1497 KKADEAKKAAEAKKKADEAKKAEEA-------KKADEAKKAEE--AKKADEAKKA--EEKKKADELKK----AEELKKae 1561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 481 QVHSMDGAKGWFERR---LKEAEESLQQQQQEQEETLKLCREEHA--AELKGKDEELQNVREQLQQAQEERDGHVKTISN 555
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKnmaLRKAEEAKKAEEARIEEVMKLYEEEKKmkAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 556 LKQEVKDTvDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEiltnskSRTGLEELVLSEMNSPSRTQTGDSSSVS 635
Cdd:PTZ00121 1642 EAEEKKKA-EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED------EKKAAEALKKEAEEAKKAEELKKKEAEE 1714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 636 SFSYREILKEKESSAIPARSLSSSPQAQPPRPAELS-DEEVAELFQRLAETQQEKWMLEEKVKHLEVSSASMAEDLCRKS 714
Cdd:PTZ00121 1715 KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
|
....*
gi 569008856 715 AIIET 719
Cdd:PTZ00121 1795 EVDKK 1799
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-602 |
9.55e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 9.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 166 EREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQ--RKEADLKAQLA 243
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAaeRELAQLQARLD 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 244 RTQKLQQELEAANQSLAELRDQRQG---------------ERLEHA--AALRALQDQVSSQSADAQEQVEGLLAENSALR 306
Cdd:TIGR02168 493 SLERLQENLEGFSEGVKALLKNQSGlsgilgvlselisvdEGYEAAieAALGGRLQAVVVENLNAAKKAIAFLKQNELGR 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 307 TSLAALEQIQTAKTQELNMLREQTS--------------------------------------ELASELQH--------- 339
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILKNIegflgvakdlvkfdpklrkalsyllggvlvvddldnalELAKKLRPgyrivtldg 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 340 ----------------------RQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARksaekRK 397
Cdd:TIGR02168 653 dlvrpggvitggsaktnssileRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS-----RQ 727
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 398 VMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEE 477
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 478 LQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEET------LKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVK 551
Cdd:TIGR02168 808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLeeqieeLSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 569008856 552 TISNLKQEVKDTVDGQRILEKKgsavLKDLKRQLHLERKRADKLQERLQEI 602
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESK----RSELRRELEELREKLAQLELRLEGL 934
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
160-601 |
1.61e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 1.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 160 ELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDS-RNKIEELQQRKEADL 238
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAaKKKAEEKKKADEAKK 1398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 239 KAQLAR-----TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALE 313
Cdd:PTZ00121 1399 KAEEDKkkadeLKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 314 QIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRA--NSRLLEQLQEIGQ-EKEQLTQDLQEAR 390
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaeEAKKADEAKKAEEkKKADELKKAEELK 1558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 391 KSAEKRKVmldelametlqEKSQHKEELGAVRLRHEKELLGV-RARYERELRELHEDKKRQEEELRGQiREEKARTRELE 469
Cdd:PTZ00121 1559 KAEEKKKA-----------EEAKKAEEDKNMALRKAEEAKKAeEARIEEVMKLYEEEKKMKAEEAKKA-EEAKIKAEELK 1626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 470 NlqhtVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREE--HAAELKGKDEELQNVREQLQQAQEERD 547
Cdd:PTZ00121 1627 K----AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDkkKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 569008856 548 gHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQE 601
Cdd:PTZ00121 1703 -KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
183-396 |
1.80e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.63 E-value: 1.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 183 SKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAEL 262
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKAL-LKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 263 RDQRQGERLEHAAALRALQDQ---------VSSQSA-DAQEQVEGLLAENSALRTSLAALEQIQT---AKTQELNMLREQ 329
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLgrqpplallLSPEDFlDAVRRLQYLKYLAPARREQAEELRADLAelaALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008856 330 TSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 396
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
186-578 |
7.40e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 7.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 186 AETSRLQEELAKLSEKLKKKQESFCRLQTEKETL--FNDSRNKIEELQQ----RKEADLKAQLARTQKLQQELEAANQSL 259
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAerYQALLKEKREYEGyellKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 260 AELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAEnsaLRTSLAALEQIQTAKTQELnmlreqtSELASELQH 339
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE---LEAEIASLERSIAEKEREL-------EDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 340 RQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEarksaekrkvmLDELAMETLQEKSQHKEELG 419
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE-----------VDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 420 AVRLRHEkELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELqaqvhsmdgakgwfERRLKea 499
Cdd:TIGR02169 396 KLKREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ--------------EWKLE-- 458
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569008856 500 eeslqqqqqeqeeTLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVL 578
Cdd:TIGR02169 459 -------------QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVH 524
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
164-475 |
1.75e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 164 EMEREEKKLLwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEAD---LKA 240
Cdd:TIGR02169 685 GLKRELSSLQ-SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL-EELEEDLSSLEQEIENVkseLKE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 241 QLARTQKLQQELEAANQSLAELRDQRQGERLEH-AAALRALQDQVSSQSADAQE---QVEGLLAENSALRTSLAALEQIQ 316
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEARLSHSRIPEiQAELSKLEEEVSRIEARLREieqKLNRLTLEKEYLEKEIQELQEQR 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 317 TAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 396
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 397 KVM-------LDELAMETLQEKSQHKEELGAVRLRHEKELLGVRAR------------YERELRELHEDKKRQE--EELR 455
Cdd:TIGR02169 923 KAKlealeeeLSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRalepvnmlaiqeYEEVLKRLDELKEKRAklEEER 1002
|
330 340
....*....|....*....|
gi 569008856 456 GQIREekaRTRELENLQHTV 475
Cdd:TIGR02169 1003 KAILE---RIEEYEKKKREV 1019
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
160-604 |
1.85e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 1.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 160 ELKWEMER-EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKE 235
Cdd:PRK02224 217 ELDEEIERyEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELaeeVRDLRERLEELEEERD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 236 ----------ADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSAL 305
Cdd:PRK02224 297 dllaeaglddADAEAVEARREELEDRDEELRDRLEECR-VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 306 RTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEsLRANSRLLEQLQEIGQEkeqltqd 385
Cdd:PRK02224 376 REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE-LEATLRTARERVEEAEA------- 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 386 LQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYER--ELRELH------EDKKRQEEELRGQ 457
Cdd:PRK02224 448 LLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERaeDLVEAEdrierlEERREDLEELIAE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 458 IREEKARTRE-LENLQHTVEELQAQvhsmdgAKGWFERRLKEAEESLQQQQQ-----EQEETLKLCRE---------EHA 522
Cdd:PRK02224 528 RRETIEEKRErAEELRERAAELEAE------AEEKREAAAEAEEEAEEAREEvaelnSKLAELKERIEslerirtllAAI 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 523 AELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGsavlkdlkrqlhlERKRADKLQERLQEI 602
Cdd:PRK02224 602 ADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEARE-------------DKERAEEYLEQVEEK 668
|
..
gi 569008856 603 LT 604
Cdd:PRK02224 669 LD 670
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
164-714 |
2.24e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 2.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 164 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSE----KLKKKQESFCRLQTEKETlfnDSRNKIEELQQRKEADlK 239
Cdd:PTZ00121 1114 ARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDakrvEIARKAEDARKAEEARKA---EDAKKAEAARKAEEVR-K 1189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 240 AQLARTQKLQQELEAANQSLAELR--DQRQGERLEHAAALRALQD-QVSSQSADAQEQVEGLLAENSALRTSLAALEQIQ 316
Cdd:PTZ00121 1190 AEELRKAEDARKAEAARKAEEERKaeEARKAEDAKKAEAVKKAEEaKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQ 1269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 317 TAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANsRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 396
Cdd:PTZ00121 1270 AAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 397 KVMLDELAMETlqEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRG--QIREEKARTRELENLQHT 474
Cdd:PTZ00121 1349 KAEAEAAADEA--EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKadELKKAAAAKKKADEAKKK 1426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 475 VEELQA---------QVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREE--HAAELKGKDEELQNVREQLQQAQ 543
Cdd:PTZ00121 1427 AEEKKKadeakkkaeEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakKADEAKKKAEEAKKKADEAKKAA 1506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 544 EERDghvKTISNLKQEVKDTVDGQRILEKKGSAvlKDLKRQlhLERKRADKLQeRLQEILTNSKSRTGLEELVLSEMNSP 623
Cdd:PTZ00121 1507 EAKK---KADEAKKAEEAKKADEAKKAEEAKKA--DEAKKA--EEKKKADELK-KAEELKKAEEKKKAEEAKKAEEDKNM 1578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 624 SRTQTGDSSSVSSFSYREILK-EKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVS 702
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKlYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
570
....*....|..
gi 569008856 703 SASMAEDLCRKS 714
Cdd:PTZ00121 1659 NKIKAAEEAKKA 1670
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
235-486 |
3.16e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 3.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 235 EADLKAQLARTQKLQQELEAANQSLAELRDQRqgERLEHAAALralqdqvssqsADAQEQVEGLLAENSALRTSLAALEQ 314
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQI--ELLEPIREL-----------AERYAAARERLAELEYLRAALRLWFA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 315 iqtakTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEslransrLLEQLQEI-GQEKEQLTQDLQEARKSA 393
Cdd:COG4913 287 -----QRRLELLEAELEELRAELARLEAELERLEARLDALREELDE-------LEAQIRGNgGDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 394 EKRKVMLDELAmetlqeksQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQH 473
Cdd:COG4913 355 EERERRRARLE--------ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA 426
|
250
....*....|...
gi 569008856 474 TVEELQAQVHSMD 486
Cdd:COG4913 427 EIASLERRKSNIP 439
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
232-477 |
1.01e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 232 QRKEADLKAQLARtqkLQQELEAANQSLAELRDQRQgERLEHAAALRALQDQVSSQ--SADAQEQVEGLLAENSALRTSL 309
Cdd:COG4913 609 RAKLAALEAELAE---LEEELAEAEERLEALEAELD-ALQERREALQRLAEYSWDEidVASAEREIAELEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 310 AALEQiqtaktqelnmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEA 389
Cdd:COG4913 685 DDLAA-----------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 390 RKSAEKRKVMLDELAMETLQEKSQHKEELGavrlRHEKELLGVRAR---------------------YERELRELHEDK- 447
Cdd:COG4913 754 RFAAALGDAVERELRENLEERIDALRARLN----RAEEELERAMRAfnrewpaetadldadleslpeYLALLDRLEEDGl 829
|
250 260 270
....*....|....*....|....*....|
gi 569008856 448 KRQEEELRGQIREEKarTRELENLQHTVEE 477
Cdd:COG4913 830 PEYEERFKELLNENS--IEFVADLLSKLRR 857
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
168-596 |
2.24e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 2.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 168 EEKKLLWEQLQGLESsKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfnDSRNKIEELQQRKEAdLKAQLARTQK 247
Cdd:COG4717 71 KELKELEEELKEAEE-KEEEYAELQEELEELEEELEELEAELEELREELEKL--EKLLQLLPLYQELEA-LEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 248 LQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLR 327
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 328 EQTSELASELQhRQAEYEELMGQKDDLNSQ-LQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAME 406
Cdd:COG4717 227 EELEQLENELE-AAALEERLKEARLLLLIAaALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 407 TLQEKSqHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARtRELENLQHTVEEL--QAQVHS 484
Cdd:COG4717 306 ELQALP-ALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE-LQLEELEQEIAALlaEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 485 MDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKD---EELQNVREQLQQAQEERDGHVKTISNLKQEVK 561
Cdd:COG4717 384 EEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeleEELEELEEELEELEEELEELREELAELEAELE 463
|
410 420 430
....*....|....*....|....*....|....*
gi 569008856 562 DTVDGQRILEKKgsAVLKDLKRQLHLERKRADKLQ 596
Cdd:COG4717 464 QLEEDGELAELL--QELEELKAELRELAEEWAALK 496
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
160-364 |
2.76e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 2.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 160 ELKWEMEREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLK 239
Cdd:COG4942 31 QLQQEIAELEKEL--AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL-EKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 240 AQLARTQKL-----------QQELEAANQSLAELRDQRQgERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTS 308
Cdd:COG4942 108 ELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKYLAP-ARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 569008856 309 LAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRA 364
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
231-607 |
2.83e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 231 QQRKEADLK-----AQLARTQKLQQELEAANQSLaelrdQRQGER----LEHAAALRALQDQVSSQSAD-AQEQVEGLLA 300
Cdd:TIGR02168 172 ERRKETERKlertrENLDRLEDILNELERQLKSL-----ERQAEKaeryKELKAELRELELALLVLRLEeLREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 301 ENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKE 380
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 381 QLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEelgavrlrhekellgvraryereLRELHEDKKRQEEELRGQIRE 460
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEE-----------------------LEAELEELESRLEELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 461 EKARTRELENlqhTVEELQAQVHSMDgakgwferrlkeaeES----LQQQQQEQEETLKLCREEHAAELKGKDEELQNVR 536
Cdd:TIGR02168 384 LRSKVAQLEL---QIASLNNEIERLE--------------ARlerlEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008856 537 EQLQQAQEERDGHVKTISNLKQEVkdtvdgqrileKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSK 607
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREEL-----------EEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
158-601 |
4.12e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.82 E-value: 4.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 158 EVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsrnkieELQQRKEAD 237
Cdd:TIGR00618 191 SLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQ---------EEQLKKQQL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 238 LKAQLARTQKLQQELEAANQSLAELRDQRQGERL-EHAAALRALQDQVSSQSADAQEQvEGLLAENSALRTSLAALEQIQ 316
Cdd:TIGR00618 262 LKQLRARIEELRAQEAVLEETQERINRARKAAPLaAHIKAVTQIEQQAQRIHTELQSK-MRSRAKLLMKRAAHVKQQSSI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 317 TAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNS--QLQESLRAnsrLLEQLQEIGQEKEQLTQDL-QEARKSA 393
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHihTLQQQKTT---LTQKLQSLCKELDILQREQaTIDTRTS 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 394 EKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRgQIREEKARTRELEnlQH 473
Cdd:TIGR00618 418 AFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKE-QIHLQETRKKAVV--LA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 474 TVEELQAQVHSmdgakgwFERRLKEAEESLQQQQQEQEETLKLCREE-----HAAELKGKDEELQNVREQLQQAQEERDG 548
Cdd:TIGR00618 495 RLLELQEEPCP-------LCGSCIHPNPARQDIDNPGPLTRRMQRGEqtyaqLETSEEDVYHQLTSERKQRASLKEQMQE 567
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 569008856 549 HVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQE 601
Cdd:TIGR00618 568 IQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK 620
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
190-398 |
4.19e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 4.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 190 RLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEAD-----LKAQLARTQKLQQELEAANQSLAELRD 264
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDAL-QERREALQRLAEYSWDEidvasAEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 265 QRQGERLEHaAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQEL-------NMLREQTSELASEL 337
Cdd:COG4913 693 QLEELEAEL-EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALleerfaaALGDAVERELRENL 771
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008856 338 QHRQAEYEELMGQK---------------DDLNSQLQESLRANSRLLEQLQEIGQEK-EQLTQDLQEARKSAEKRKV 398
Cdd:COG4913 772 EERIDALRARLNRAeeeleramrafnrewPAETADLDADLESLPEYLALLDRLEEDGlPEYEERFKELLNENSIEFV 848
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
268-608 |
6.16e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 6.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 268 GERLEHAAALRALQDQVSSQSAdaQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEEL 347
Cdd:TIGR02169 658 GSRAPRGGILFSRSEPAELQRL--RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 348 MGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvmlDELAMETLQEKsqhkeelgavrlrhek 427
Cdd:TIGR02169 736 KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE---ARLSHSRIPEI---------------- 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 428 ellgvraryERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEaeeslqqqq 507
Cdd:TIGR02169 797 ---------QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN--------- 858
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 508 qeqeetLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVkdtvdgqrilekkgsavlKDLKRQLHL 587
Cdd:TIGR02169 859 ------LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI------------------EELEAQIEK 914
|
330 340
....*....|....*....|.
gi 569008856 588 ERKRADKLQERLQEILTNSKS 608
Cdd:TIGR02169 915 KRKRLSELKAKLEALEEELSE 935
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
156-485 |
8.39e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 8.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 156 LAEVELKWEMEREEKKLLWEQLQGLESsKQAETSRLQEELAKLSEKLKKKQESFCRLQT----EKETLFNDSRNKIEELQ 231
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEE-RLEELRELEEELEELEAELAELQEELEELLEqlslATEEELQDLAEELEELQ 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 232 QRK---EADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTS 308
Cdd:COG4717 206 QRLaelEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 309 LAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQE 388
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 389 ARkSAEKRKVMLDELAMETLQEKSQHkeelgAVRLRHEKELLGVRARYERELREL---------HEDKKRQEEELRGQIR 459
Cdd:COG4717 366 EE-LEQEIAALLAEAGVEDEEELRAA-----LEQAEEYQELKEELEELEEQLEELlgeleelleALDEEELEEELEELEE 439
|
330 340
....*....|....*....|....*.
gi 569008856 460 EEKARTRELENLQHTVEELQAQVHSM 485
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEQL 465
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
212-562 |
8.61e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 8.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 212 LQTEKETLFNDSRNKIEELQQRKEAdlkaqlaRTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADA 291
Cdd:pfam15921 243 VEDQLEALKSESQNKIELLLQQHQD-------RIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 292 QEQVEGLLAENSALRTSLAALEQIQTAKTQElnmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLranSRLLEQ 371
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL---ADLHKR 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 372 LQEIGQEKEQ----LTQDLQEARKSAEKRKvMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYE--RELRELHE 445
Cdd:pfam15921 390 EKELSLEKEQnkrlWDRDTGNSITIDHLRR-ELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNEslEKVSSLTA 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 446 DKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHsmdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHaaeL 525
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQ---------EKERAIEATNAEITKLRSRVDLKLQELQH---L 536
|
330 340 350
....*....|....*....|....*....|....*..
gi 569008856 526 KGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKD 562
Cdd:pfam15921 537 KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEN 573
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
211-472 |
8.79e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 8.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 211 RLQTEKETLFNDSRNKIEElqqRKEADLKAQLARtqkLQQELEAANQSLAELRDQRqgerlEHAAALRALQDQVSSQSAD 290
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEE---KEEKDLHERLNG---LESELAELDEEIERYEEQR-----EQARETRDEADEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 291 AQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAE--------------YEELMGQKDDLNS 356
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEaglddadaeavearREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 357 QLQ-------------ESLRANSRLLE-QLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELametlqeksqhKEELGAVR 422
Cdd:PRK02224 329 RLEecrvaaqahneeaESLREDADDLEeRAEELREEAAELESELEEAREAVEDRREEIEEL-----------EEEIEELR 397
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 569008856 423 LRHE--KELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQ 472
Cdd:PRK02224 398 ERFGdaPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALL 449
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-608 |
2.53e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 2.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 53 ELSSLRQKVAYLDKEFSKAQKLC-----------SQLEQLELENRQLKEGVpgaagAHVDGELLRLQAENTALQKNMAAL 121
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELeeltaelqeleEKLEELRLEVSELEEEI-----EELQKELYALANEISRLEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 122 QERYgKEAVRPSAVGEGQgdppgdvlptplapmpLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEK 201
Cdd:TIGR02168 308 RERL-ANLERQLEELEAQ----------------LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 202 LKKKQESFCRLQTEKETLF------NDSRNKIEELqqrkEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERL---- 271
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAqlelqiASLNNEIERL----EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeele 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 272 -------EHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSE---------LAS 335
Cdd:TIGR02168 447 eeleelqEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNqsglsgilgVLS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 336 ELQHRQAEYE--------ELMG---------QKDDLNSQLQESL--------------RANSRLLEQLQEIGQEKeQLTQ 384
Cdd:TIGR02168 527 ELISVDEGYEaaieaalgGRLQavvvenlnaAKKAIAFLKQNELgrvtflpldsikgtEIQGNDREILKNIEGFL-GVAK 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 385 DLQEARKSAEK-------RKVMLDELAMETLQEKSQHKEEL------------GAVRLRHEKELLGVRARyERELRELHE 445
Cdd:TIGR02168 606 DLVKFDPKLRKalsyllgGVLVVDDLDNALELAKKLRPGYRivtldgdlvrpgGVITGGSAKTNSSILER-RREIEELEE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 446 DKKRQEEELRgqireekARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEEtlklcREEHAAEL 525
Cdd:TIGR02168 685 KIEELEEKIA-------ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ-----LEERIAQL 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 526 KGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTN 605
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
...
gi 569008856 606 SKS 608
Cdd:TIGR02168 833 IAA 835
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-385 |
3.29e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 3.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 53 ELSSLRQKVAYLDKEFSKAQKLCSQLEQlELENRQLKEGVPGAAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRp 132
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSR-QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE- 776
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 133 savgegqgdppgdvlptplapmpLAEVELKWEMEREEKKLLWEQLQGLES---SKQAETSRLQEELAKLSEKLKKKQesf 209
Cdd:TIGR02168 777 -----------------------LAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLE--- 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 210 cRLQTEKETLFNDSRNKIEELQQRkEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQVSSQSA 289
Cdd:TIGR02168 831 -RRIAATERRLEDLEEQIEELSED-IESLAAEIEELEELIEELESELEALLNERASLE----EALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 290 DAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELAS------------------ELQHRQA--------- 342
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSltleeaealenkieddeeEARRRLKrlenkikel 984
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 569008856 343 ---------EYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQD 385
Cdd:TIGR02168 985 gpvnlaaieEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKD 1036
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
160-484 |
4.55e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 4.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 160 ELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLK 239
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 240 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAK 319
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 320 TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVM 399
Cdd:pfam02463 334 KEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 400 LDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQ 479
Cdd:pfam02463 414 ARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ 493
|
....*
gi 569008856 480 AQVHS 484
Cdd:pfam02463 494 KLEER 498
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
152-480 |
5.00e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 5.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 152 APMPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSE-----------------KLKKKQESFCRLQT 214
Cdd:PRK02224 403 APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphveTIEEDRERVEELEA 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 215 EKETLfndsRNKIEELQQRKEA--DLKAQLARTQKLQQELEAANQSLAELRDqRQGERLEHAAALRALQDQVSSQSADAQ 292
Cdd:PRK02224 483 ELEDL----EEEVEEVEERLERaeDLVEAEDRIERLEERREDLEELIAERRE-TIEEKRERAEELRERAAELEAEAEEKR 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 293 EQVEGLLAENSALRTSLAALEQIQTAKTQELNMLrEQTSELASELQHRQAEYEELMGQKDDLNSQlqeslraNSRLLEQL 372
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAEL-------NDERRERL 629
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 373 QEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEElgavrlrHEKELLGVRARYERELRELhedkkrqeE 452
Cdd:PRK02224 630 AEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELRE-------ERDDLQAEIGAVENELEEL--------E 694
|
330 340
....*....|....*....|....*...
gi 569008856 453 ELRGQIREEKARTRELENLQHTVEELQA 480
Cdd:PRK02224 695 ELRERREALENRVEALEALYDEAEELES 722
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
52-576 |
5.00e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 5.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 52 PELSSLRQKVAYLDKEFSKAQKLCSQLEQLELENRQLKegvpgaagahvdGELLRLQAENTALQKNMAALQERYGKeavr 131
Cdd:PRK03918 214 SELPELREELEKLEKEVKELEELKEEIEELEKELESLE------------GSKRKLEEKIRELEERIEELKKEIEE---- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 132 psavgegqgdppgdvlptplapmpLAEVELKWEmEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCR 211
Cdd:PRK03918 278 ------------------------LEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 212 LQTEKEtlfndsrnKIEELQQRKEaDLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADA 291
Cdd:PRK03918 333 LEEKEE--------RLEELKKKLK-ELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 292 QEQVEGLLAENSALRTSLA----ALEQIQTAKT------------QELNMLREQTSELA---SELQHRQAEYEELMGQKD 352
Cdd:PRK03918 404 EEEISKITARIGELKKEIKelkkAIEELKKAKGkcpvcgrelteeHRKELLEEYTAELKrieKELKEIEEKERKLRKELR 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 353 DLNSQL--QESLRANSRLLEQLQEIGQE-KEQLTQDLQEARKSAEKRKVMLDELAME--TLQEKSQHKEELGAVRLRHEK 427
Cdd:PRK03918 484 ELEKVLkkESELIKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEikSLKKELEKLEELKKKLAELEK 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 428 ELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQ 507
Cdd:PRK03918 564 KLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLE 643
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 569008856 508 QEQEETLKLCR---EEHAAELKGKDEELQN----VREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSA 576
Cdd:PRK03918 644 ELRKELEELEKkysEEEYEELREEYLELSRelagLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA 719
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
374-627 |
5.11e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 5.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 374 EIGQEKEQLTQDLQEARKSAEKRKVMLDELA--METLQEKSQHKEELGAVRLRHEkellgvraryERELRELHEDKKRQE 451
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRqqLERLRREREKAERYQALLKEKR----------EYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 452 EELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEE 531
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 532 LQNVREQLQQAQEERDGHVKTISNLKQEVKDtvdgQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTG 611
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250
....*....|....*.
gi 569008856 612 LEELVLSEMNSPSRTQ 627
Cdd:TIGR02169 393 KLEKLKREINELKREL 408
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
193-365 |
6.21e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 6.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 193 EELAKLSEKLKKKQESFCRLQTEKETL--FNDSR--NKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQ- 267
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALrlWFAQRrlELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRg 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 268 --GERLEHAAA-LRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEY 344
Cdd:COG4913 335 ngGDRLEQLEReIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL 414
|
170 180
....*....|....*....|.
gi 569008856 345 EELMGQKDDLNSQLqESLRAN 365
Cdd:COG4913 415 RDLRRELRELEAEI-ASLERR 434
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
290-470 |
6.21e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 6.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 290 DAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEY--EELMGQKDDLNSQLQEsLRANSR 367
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELER-LDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 368 LLEQLQeigqekEQLtQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHE----KELLGVRARYERELREL 443
Cdd:COG4913 686 DLAALE------EQL-EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEaaedLARLELRALLEERFAAA 758
|
170 180
....*....|....*....|....*....
gi 569008856 444 HEDKKRQE--EELRGQIREEKARTRELEN 470
Cdd:COG4913 759 LGDAVERElrENLEERIDALRARLNRAEE 787
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
227-428 |
7.08e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 7.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 227 IEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQrqgerLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALR 306
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEK-----EEEYAELQEELEELEEELEELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 307 TSLAALEQIQtaKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEslrANSRLLEQLQEIGQEKEQLTQDL 386
Cdd:COG4717 123 KLLQLLPLYQ--ELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE---LQEELEELLEQLSLATEEELQDL 197
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 569008856 387 QEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKE 428
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
285-485 |
7.75e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 7.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 285 SSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEY-------EELMGQKDDLNSQ 357
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELaaleaelAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 358 LQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELA------METLQEKSQHKEELGAVRLRHEKELLG 431
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAparreqAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 569008856 432 VRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSM 485
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
185-602 |
1.06e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 185 QAETSRLQEELAKLSEKLKKKQESFcrlqTEKETLFNDSRNKIEELQQRKEaDLKAQLartQKLQQELEAANQSLAELRD 264
Cdd:TIGR04523 217 ESQISELKKQNNQLKDNIEKKQQEI----NEKTTEISNTQTQLNQLKDEQN-KIKKQL---SEKQKELEQNNKKIKELEK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 265 QRQgerlEHAAALRALQDQ--------VSSQSADAQEQVEGL---LAEN----SALRTSLAALEQIQTAKTQELNMLREQ 329
Cdd:TIGR04523 289 QLN----QLKSEISDLNNQkeqdwnkeLKSELKNQEKKLEEIqnqISQNnkiiSQLNEQISQLKKELTNSESENSEKQRE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 330 TSELASELQHRQAEYEE-------LMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDE 402
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSykqeiknLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 403 LAMETLQEKSQHKeELGAVRLRHEKELlgvrARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 482
Cdd:TIGR04523 445 LTNQDSVKELIIK-NLDNTRESLETQL----KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKI 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 483 HSMdgakgwferrlkeaeeslqqqqQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQ--EERDGHVKTISNLKQEV 560
Cdd:TIGR04523 520 SSL----------------------KEKIEKLESEKKEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQ 577
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 569008856 561 KDTVDGQRILE---KKGSAVLKDLKRQLHLERKRADKLQERLQEI 602
Cdd:TIGR04523 578 KSLKKKQEEKQeliDQKEKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
190-482 |
1.12e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.19 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 190 RLQEELAKLSEKLKKKQESFCRLQTEKEtlfnDSRNKIEELQQRKEaDLKAQLArtqKLQQELEAA-------NQSLAEL 262
Cdd:PRK04863 352 RYQADLEELEERLEEQNEVVEEADEQQE----ENEARAEAAEEEVD-ELKSQLA---DYQQALDVQqtraiqyQQAVQAL 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 263 RDQRQgerLEHAAALRA--LQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAktqeLNMLREQTSELASELQHR 340
Cdd:PRK04863 424 ERAKQ---LCGLPDLTAdnAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA----YQLVRKIAGEVSRSEAWD 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 341 QAEyeELMGQkddlnsqlQESLRAnsrLLEQLQEIGQEKEQLTQDLQEARkSAEKrkvMLDELAMEtLQEKSQHKEELGA 420
Cdd:PRK04863 497 VAR--ELLRR--------LREQRH---LAEQLQQLRMRLSELEQRLRQQQ-RAER---LLAEFCKR-LGKNLDDEDELEQ 558
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 569008856 421 VRLRHEKELLGVRArYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 482
Cdd:PRK04863 559 LQEELEARLESLSE-SVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQS 619
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
255-482 |
1.28e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 255 ANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSlaaleqiqtaktQELNMLREQTSELA 334
Cdd:COG3206 158 AEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLS------------EEAKLLLQQLSELE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 335 SELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLE--QLQEIGQEKEQLTQDLQEARksaekrkvmldelamETLQEKS 412
Cdd:COG3206 226 SQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELS---------------ARYTPNH 290
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569008856 413 ----QHKEELGAVRLRHEKELLGVRARYERELRELhedkKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 482
Cdd:COG3206 291 pdviALRAQIAALRAQLQQEAQRILASLEAELEAL----QAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
166-471 |
1.29e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 166 EREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLART 245
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 246 QKLQQELEAANQSLA---------ELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEgLLAENSALRTSLAALEQIQ 316
Cdd:COG1196 505 GFLEGVKAALLLAGLrglagavavLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE-YLKAAKAGRATFLPLDKIR 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 317 TAKTQELNMLREQTSELASELQHRQAEYEELM-----------------------------------GQKDDLNSQLQES 361
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYyvlgdtllgrtlvaarleaalrravtlagrlrevtLEGEGGSAGGSLT 663
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 362 LRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELR 441
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
330 340 350
....*....|....*....|....*....|....*.
gi 569008856 442 ELHEDKKRQEEELRGQIREEKAR------TRELENL 471
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEELErelerlEREIEAL 779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
308-575 |
1.63e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 308 SLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQ 387
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 388 EARKSAEKRKVMLDELaMETLQEKSQHKEELGAVRLRHEKELLgVRARYereLRELHEDKKRQEEELRGQIREEKARTRE 467
Cdd:COG4942 94 ELRAELEAQKEELAEL-LRALYRLGRQPPLALLLSPEDFLDAV-RRLQY---LKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 468 LENLQHTVEELQAQVhsmdgakgwferrlkeaeeslqQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERD 547
Cdd:COG4942 169 LEAERAELEALLAEL----------------------EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250 260
....*....|....*....|....*...
gi 569008856 548 GHVKTISNLKQEVKDTVDGQRILEKKGS 575
Cdd:COG4942 227 ALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
226-444 |
1.97e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.09 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 226 KIEEL-QQRKEADLKA-----QLARTQKLQQELEAAN-QSLAELRDQRQgERLEHAAALRALQDQVSSQSADAQEQVEGL 298
Cdd:PHA02562 175 KIRELnQQIQTLDMKIdhiqqQIKTYNKNIEEQRKKNgENIARKQNKYD-ELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 299 LAENSALRTSLAALE-QIQTAK---------------TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESL 362
Cdd:PHA02562 254 SAALNKLNTAAAKIKsKIEQFQkvikmyekggvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 363 RANSRLLEQLQEIGQEKeqltQDLQEARKSAEKRKVMLDELAMETLqeksQHKEELGAVRlRHEKELLGVRARYERELRE 442
Cdd:PHA02562 334 EQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEELQAEFV----DNAEELAKLQ-DELDKIVKTKSELVKEKYH 404
|
..
gi 569008856 443 LH 444
Cdd:PHA02562 405 RG 406
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
185-476 |
2.39e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.41 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 185 QAETSRLQEELAKLSEKLKKKQ---ESFCRLQTEKETLF--NDSRNKIEELQQRK---EADLKAQLARTQKLQQELEAAN 256
Cdd:PRK04863 792 RAEREELAERYATLSFDVQKLQrlhQAFSRFIGSHLAVAfeADPEAELRQLNRRRvelERALADHESQEQQQRSQLEQAK 871
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 257 QSLAELR----------DQRQGERLEHAAA--LRALQDQVS-SQSADAQEQVEGLLaenSALRTSLAALEQIQTAKTQEL 323
Cdd:PRK04863 872 EGLSALNrllprlnllaDETLADRVEEIREqlDEAEEAKRFvQQHGNALAQLEPIV---SVLQSDPEQFEQLKQDYQQAQ 948
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 324 NMLRE--QTSELASELQHRQAE--YEE---LMGQKDDLNSQLQESLR----ANSRLLEQLQEIGQEKEQLTQDLQEARKS 392
Cdd:PRK04863 949 QTQRDakQQAFALTEVVQRRAHfsYEDaaeMLAKNSDLNEKLRQRLEqaeqERTRAREQLRQAQAQLAQYNQVLASLKSS 1028
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 393 AEKRKVMLDELAMEtLQEKSQHKEELGAVRLRHEKELLGVRARYERELR-ELHEDKKRQEEELRGQIREEKARTRELENL 471
Cdd:PRK04863 1029 YDAKRQMLQELKQE-LQDLGVPADSGAEERARARRDELHARLSANRSRRnQLEKQLTFCEAEMDNLTKKLRKLERDYHEM 1107
|
....*
gi 569008856 472 QHTVE 476
Cdd:PRK04863 1108 REQVV 1112
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
230-464 |
2.53e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 230 LQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEH-AAALRALQDQVSSQSADAQEQVEGLLAENSALRTS 308
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNgLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 309 LAALEQIQTAKTQELNMLRE--QTSELASELQHRQAEYEELMGQKDDLNSQLQEslrANSRLLEQLQEIGQEKEQLTQDL 386
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPNHPDVIA---LRAQIAALRAQLQQEAQRILASL 318
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 569008856 387 QEARKSAEKRKVMLDElAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELrelhedKKRQEEELRGQIREEKAR 464
Cdd:COG3206 319 EAELEALQAREASLQA-QLAQLEARLAELPELEAELRRLEREVEVARELYESLL------QRLEEARLAEALTVGNVR 389
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
161-607 |
2.55e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 161 LKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKkqesfcRLQTEKETLFNDSRNKIEELQQRKEADLKA 240
Cdd:TIGR00618 245 LTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINR------ARKAAPLAAHIKAVTQIEQQAQRIHTELQS 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 241 QLA-RTQKLQQELEAANQSlAELRDQRQGERLEHAaalralQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAK 319
Cdd:TIGR00618 319 KMRsRAKLLMKRAAHVKQQ-SSIEEQRRLLQTLHS------QEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 320 TQELNMLREQTSELASE---LQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 396
Cdd:TIGR00618 392 TQKLQSLCKELDILQREqatIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKER 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 397 KVMLDELAMETLQEKSQHKEElGAVRLRHEKEllgvraRYERELRELHEDKKRQeeelrgQIREEKARTRELENLQHTVE 476
Cdd:TIGR00618 472 EQQLQTKEQIHLQETRKKAVV-LARLLELQEE------PCPLCGSCIHPNPARQ------DIDNPGPLTRRMQRGEQTYA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 477 ELQAQVHSMDGaKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNL 556
Cdd:TIGR00618 539 QLETSEEDVYH-QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHAL 617
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 569008856 557 KQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSK 607
Cdd:TIGR00618 618 LRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR 668
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
198-602 |
2.62e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 198 LSEKLKKKQESFCRLQTEKETLFNDSRNKIEE---LQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQG-ERLEH 273
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEelkEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKlEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 274 AAALRALQDQVSSQSADAQEQVEGL---LAENSALRTSLAALEQIQTAKTQELNMLREQTS-ELASELQHRQAEYEELMG 349
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELeerLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 350 QKddlnSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKEL 429
Cdd:COG4717 207 RL----AELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 430 LGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQH--------TVEELQAQVHSMDGAKGWFERRLKEAEE 501
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAalglppdlSPEELLELLDRIEELQELLREAEELEEE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 502 SLQQQQQEQEETL-KLCREEHAAELKGKDEELQNvREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKkgsavLKD 580
Cdd:COG4717 363 LQLEELEQEIAALlAEAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEEELEEE-----LEE 436
|
410 420
....*....|....*....|..
gi 569008856 581 LKRQLHLERKRADKLQERLQEI 602
Cdd:COG4717 437 LEEELEELEEELEELREELAEL 458
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
157-485 |
2.69e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.79 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 157 AEVELKWEMEREEKKLLWEQLQG---------LESSKQAETSRLQ---------EELAKLSEKLKK------KQESFCRL 212
Cdd:pfam05483 168 AEKTKKYEYEREETRQVYMDLNNniekmilafEELRVQAENARLEmhfklkedhEKIQHLEEEYKKeindkeKQVSLLLI 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 213 Q-TEKET-------LFNDSRNKIEELQQR---KEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQ 281
Cdd:pfam05483 248 QiTEKENkmkdltfLLEESRDKANQLEEKtklQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTIC 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 282 DQVSSQSADAQEQVEGLLAEN---SALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQL 358
Cdd:pfam05483 328 QLTEEKEAQMEELNKAKAAHSfvvTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 359 QE---SLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET----------LQEKSQHKEELGAVRLR- 424
Cdd:pfam05483 408 EElkkILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLtaiktseehyLKEVEDLKTELEKEKLKn 487
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 569008856 425 -----HEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSM 485
Cdd:pfam05483 488 ieltaHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESV 553
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
160-470 |
3.41e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 3.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 160 ELKWEMEREEKKLLWEQLQGLESSKQAETSRL--QEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRK--- 234
Cdd:pfam02463 709 KEELKKLKLEAEELLADRVQEAQDKINEELKLlkQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKlkv 788
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 235 EADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQ 314
Cdd:pfam02463 789 EEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 315 IQTAKTQELNMLREqtsELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAE 394
Cdd:pfam02463 869 LQELLLKEEELEEQ---KLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEA 945
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 569008856 395 KRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELEN 470
Cdd:pfam02463 946 DEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
224-481 |
3.51e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 47.33 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 224 RNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQ-----------RQGERLEHAAALRALQDQVSSQSADAQ 292
Cdd:pfam05667 242 KRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSfsgssttdtglTKGSRFTHTEKLQFTNEAPAATSSPPT 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 293 EQVEgllaensalrtslaaLEQIQTAKTQELNMLREQTSELASELQhrqaEYEELMGQKDDLNSQLQESLRANSRLLEQL 372
Cdd:pfam05667 322 KVET---------------EEELQQQREEELEELQEQLEDLESSIQ----ELEKEIKKLESSIKQVEEELEELKEQNEEL 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 373 QEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEElgavrlrHEKELLgvrARYeRELRELHEDKKRQEE 452
Cdd:pfam05667 383 EKQYKVKKKTLDLLPDAEENIAKLQALVDASA-QRLVELAGQWEK-------HRVPLI---EEY-RALKEAKSNKEDESQ 450
|
250 260
....*....|....*....|....*....
gi 569008856 453 ELRGQIREEKARTRELENLQHTVEELQAQ 481
Cdd:pfam05667 451 RKLEEIKELREKIKEVAEEAKQKEELYKQ 479
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
221-481 |
4.23e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 221 NDSRNKIEELQQRK--EADLKAqlartqkLQQELEAANQSLAELRDQRQgerleHAAALRALQDQVSSQSADAQEQVEGL 298
Cdd:PRK11281 39 ADVQAQLDALNKQKllEAEDKL-------VQQDLEQTLALLDKIDRQKE-----ETEQLKQQLAQAPAKLRQAQAELEAL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 299 LAENSAL------RTSLAALEQIQTAKTQELNMLREQTSELASEL--QHRQAEyeelmgqkddlnsQLQESLRANSrllE 370
Cdd:PRK11281 107 KDDNDEEtretlsTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLvsLQTQPE-------------RAQAALYANS---Q 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 371 QLQEIGQEKEQLTQDlqEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLrheKELLGVRaryeRELRELHEDkkRQ 450
Cdd:PRK11281 171 RLQQIRNLLKGGKVG--GKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQL---QDLLQKQ----RDYLTARIQ--RL 239
|
250 260 270
....*....|....*....|....*....|.
gi 569008856 451 EEELrgQIREEKARTRELENLQHTVEELQAQ 481
Cdd:PRK11281 240 EHQL--QLLQEAINSKRLTLSEKTVQEAQSQ 268
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
157-415 |
4.34e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 157 AEVELKWEMEREEKKLLWEQLQGLESSK-QAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKE 235
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 236 ADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQ-DQVSSQSADAQEQVEGLL--AENSALRTSLAAL 312
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaEELKKAEEENKIKAEEAKkeAEEDKKKAEEAKK 1751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 313 EQIQTAKTQELNMLREQTSELASELQHRQAEyEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKS 392
Cdd:PTZ00121 1752 DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE-EELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS 1830
|
250 260
....*....|....*....|...
gi 569008856 393 AEKRKVMLDELAMETLQEKSQHK 415
Cdd:PTZ00121 1831 AIKEVADSKNMQLEEADAFEKHK 1853
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
192-609 |
4.49e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.14 E-value: 4.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 192 QEELAKLSEKLKKKQESFCRLQTEkETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELrdqrqgerl 271
Cdd:pfam12128 470 DERIERAREEQEAANAEVERLQSE-LRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHF--------- 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 272 ehaaalralqdqVSSQSADAQEQVEGLLAENSALRTSLAAlEQIQTAKTQELNM----LREQTSELASELQHRQAEYEEL 347
Cdd:pfam12128 540 ------------LRKEAPDWEQSIGKVISPELLHRTDLDP-EVWDGSVGGELNLygvkLDLKRIDVPEWAASEEELRERL 606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 348 mgqkDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEK 427
Cdd:pfam12128 607 ----DKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANE 682
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 428 ELLGVraryERELRELHEDKKRQEEELRGQIREekARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAeeslqqqq 507
Cdd:pfam12128 683 RLNSL----EAQLKQLDKKHQAWLEEQKEQKRE--ARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAE-------- 748
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 508 qeqeetLKLCREEHAAELKGKDEELQNV------REQLQQ--AQEERDGHVKTI-------------SNLKQEVKDTVDG 566
Cdd:pfam12128 749 ------LKALETWYKRDLASLGVDPDVIaklkreIRTLERkiERIAVRRQEVLRyfdwyqetwlqrrPRLATQLSNIERA 822
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 569008856 567 QRILEKKGSAVLKDLKR---QLHLERKRADKLQERLQEILTNSKSR 609
Cdd:pfam12128 823 ISELQQQLARLIADTKLrraKLEMERKASEKQQVRLSENLRGLRCE 868
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
193-490 |
6.33e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 6.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 193 EELAKLSEKLKKKQESFCRLQTEKETLFNDSRNkIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRdqrqgERLE 272
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTEN-IEELIKEKEKELEEVLREINEISSELPELREELEKLE-----KEVK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 273 HAAALRalqdqvsSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELaSELQHRQAEYEELMGQKD 352
Cdd:PRK03918 232 ELEELK-------EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 353 DLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELamETLQEKSQHKEELGAVRLRHEKELLGV 432
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL--EELEERHELYEEAKAKKEELERLKKRL 381
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 569008856 433 RARYERELRELHEDKKRQEEELRGQIREEKARTRELENlqhTVEELQAQVHSMDGAKG 490
Cdd:PRK03918 382 TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKK---EIKELKKAIEELKKAKG 436
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
193-417 |
6.42e-05 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 46.25 E-value: 6.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 193 EELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLE 272
Cdd:pfam03528 4 EDLQQRVAELEKENAEFYRLKQQLEAEFNQKRAKFKELYLAKEEDLKRQNAVLQEAQVELDALQNQLALARAEMENIKAV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 273 HAAALRALQDQVSSQSADAQEQVegllaensalrTSLAALEQiQTAKTQELNMLREQTSELASELQHRQAEYEElmgqKD 352
Cdd:pfam03528 84 ATVSENTKQEAIDEVKSQWQEEV-----------ASLQAIMK-ETVREYEVQFHRRLEQERAQWNQYRESAERE----IA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008856 353 DLNSQLQEslransrlleqlqeiGQEKEQLTQDLQEARKSAEKRK--VMLDELAMETLQEKSQHKEE 417
Cdd:pfam03528 148 DLRRRLSE---------------GQEEENLEDEMKKAQEDAEKLRsvVMPMEKEIAALKAKLTEAED 199
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
183-387 |
7.43e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 7.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 183 SKQAETSR----LQEELAKLSEKLKKKQESFCRLQTEKETL-----FNDSRNKIEELQQRK---EADLKAQLARTQKLQQ 250
Cdd:COG3206 168 LRREEARKalefLEEQLPELRKELEEAEAALEEFRQKNGLVdlseeAKLLLQQLSELESQLaeaRAELAEAEARLAALRA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 251 ELEAANQSLAEL-RDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAA-LEQIQTAKTQELNMLRE 328
Cdd:COG3206 248 QLGSGPDALPELlQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQeAQRILASLEAELEALQA 327
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008856 329 QTSELASELQHRQAEYEELMGQKDDLNsQLQESLRANSR----LLEQLQEIGQEKEQLTQDLQ 387
Cdd:COG3206 328 REASLQAQLAQLEARLAELPELEAELR-RLEREVEVARElyesLLQRLEEARLAEALTVGNVR 389
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
157-619 |
9.13e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 9.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 157 AEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQE-------ELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEE 229
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREakrmyedKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 230 LQQ------RKEADLKAQLARTQKLQQELEAANQSLAELR---DQRQGERLEHAAALRAL----QDQVSSQSADAQ---- 292
Cdd:pfam15921 379 LQKlladlhKREKELSLEKEQNKRLWDRDTGNSITIDHLRrelDDRNMEVQRLEALLKAMksecQGQMERQMAAIQgkne 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 293 --EQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLL- 369
Cdd:pfam15921 459 slEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKn 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 370 --EQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL----------AMETLQEKSQHKEELGAVRLRHeKELLGVRARYE 437
Cdd:pfam15921 539 egDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtAGAMQVEKAQLEKEINDRRLEL-QEFKILKDKKD 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 438 RELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERR---LKEAEESLQQQQQEQEETL 514
Cdd:pfam15921 618 AKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDyevLKRNFRNKSEEMETTTNKL 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 515 KLcreehaaELKGKDEELQNVREQLqQAQEERDGH-VKTISNLKQEV---KDTVDGQRILEKKGSAVLKDLKRQLHLERK 590
Cdd:pfam15921 698 KM-------QLKSAQSELEQTRNTL-KSMEGSDGHaMKVAMGMQKQItakRGQIDALQSKIQFLEEAMTNANKEKHFLKE 769
|
490 500
....*....|....*....|....*....
gi 569008856 591 RADKLQERLQEILTNSKSRTGLEELVLSE 619
Cdd:pfam15921 770 EKNKLSQELSTVATEKNKMAGELEVLRSQ 798
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
182-398 |
1.13e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 182 SSKQAETSRLQEELAKLSEKLKKKQESFcrlqteketlfndsrNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAE 261
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAEL---------------EELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 262 LRDQRqGERLEHAAALRALQDQVSS--QSADAQEQVEGLLAENSALRTSLAALEQIQTAKtQELNMLREQTSELASELQH 339
Cdd:COG3883 84 RREEL-GERARALYRSGGSVSYLDVllGSESFSDFLDRLSALSKIADADADLLEELKADK-AELEAKKAELEAKLAELEA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 569008856 340 RQAEYEElmgQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKV 398
Cdd:COG3883 162 LKAELEA---AKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
217-413 |
1.23e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 217 ETLFNDSRNKIEELQQrKEADLKAQLArtqKLQQELEAANQSLAELRDQRQGERlEHAAALRALQDQVSSQSADAQEQVE 296
Cdd:COG3883 15 DPQIQAKQKELSELQA-ELEAAQAELD---ALQAELEELNEEYNELQAELEALQ-AEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 297 GLLAENSALRTSLAALEQIQTAKTQE--------LNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRL 368
Cdd:COG3883 90 ERARALYRSGGSVSYLDVLLGSESFSdfldrlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 569008856 369 LEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQ 413
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
175-413 |
1.32e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 45.82 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 175 EQLQG----LESSKQAETSRLQ-----EELAKLSEKLKKKqesfcrLQTEKETLFNDSRN-KIEELQQRKEADLKAQLAR 244
Cdd:PRK10929 48 EALQSalnwLEERKGSLERAKQyqqviDNFPKLSAELRQQ------LNNERDEPRSVPPNmSTDALEQEILQVSSQLLEK 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 245 TQKLQQELEAANQ---SLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALE--QIQTAK 319
Cdd:PRK10929 122 SRQAQQEQDRAREisdSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELElaQLSANN 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 320 TQELNMLR-----EQTSELASELQ--------HRQAEYEE-------LMGQKDDLNSQLQESLRAN---SRLLEQ----L 372
Cdd:PRK10929 202 RQELARLRselakKRSQQLDAYLQalrnqlnsQRQREAERalestelLAEQSGDLPKSIVAQFKINrelSQALNQqaqrM 281
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 569008856 373 QEIGQEKEQLTQDLQEARKsaekrkvmldelAMETLQEKSQ 413
Cdd:PRK10929 282 DLIASQQRQAASQTLQVRQ------------ALNTLREQSQ 310
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
156-403 |
1.33e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 156 LAEVELKWEMEREEKKLLWEQLQGLesSKQAETSRLQEELAKlsEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKE 235
Cdd:pfam12128 606 LDKAEEALQSAREKQAAAEEQLVQA--NGELEKASREETFAR--TALKNARLDLRRLFDEKQSEKDKKNKALAERKDSAN 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 236 A---DLKAQL-ARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEgllAENSALRT---- 307
Cdd:pfam12128 682 ErlnSLEAQLkQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAK---AELKALETwykr 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 308 SLAAL---EQIQTAKTQELNMLrEQTSELASELQHRQAEYEELMG-----QKDDLNSQLQESLRANSRLLEQLQEIGQEK 379
Cdd:pfam12128 759 DLASLgvdPDVIAKLKREIRTL-ERKIERIAVRRQEVLRYFDWYQetwlqRRPRLATQLSNIERAISELQQQLARLIADT 837
|
250 260
....*....|....*....|....
gi 569008856 380 EQLTQDLQEARKSAEKRKVMLDEL 403
Cdd:pfam12128 838 KLRRAKLEMERKASEKQQVRLSEN 861
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
168-371 |
1.73e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 168 EEKKLLWEQLQGLESSKQAetsrLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRnkIEELQQRkEADLKAQLARtqk 247
Cdd:COG3206 212 EEAKLLLQQLSELESQLAE----ARAELAEAEARLAALRAQLGSGPDALPELLQSPV--IQQLRAQ-LAELEAELAE--- 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 248 LQQELEAANQSLAELRDQRqgerlehAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQiqtaKTQELNMLR 327
Cdd:COG3206 282 LSARYTPNHPDVIALRAQI-------AALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEA----RLAELPELE 350
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 569008856 328 EQTSELASELQHRQAEYEELMGQKDDLNSQLQESLrANSRLLEQ 371
Cdd:COG3206 351 AELRRLEREVEVARELYESLLQRLEEARLAEALTV-GNVRVIDP 393
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
227-500 |
1.80e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 227 IEELQQRK---EADLKAQLARTQKLQQELEAANQSLAELR----------DQRQGERLEhaaALRALQDQVSS------Q 287
Cdd:COG3096 838 LAALRQRRselERELAQHRAQEQQLRQQLDQLKEQLQLLNkllpqanllaDETLADRLE---ELREELDAAQEaqafiqQ 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 288 SADAQEQVEGLLaenSALRTSLAALEQIQTAKTQ---ELNMLREQTSELASELQHRQA----EYEELMGQKDDLNSQLQE 360
Cdd:COG3096 915 HGKALAQLEPLV---AVLQSDPEQFEQLQADYLQakeQQRRLKQQIFALSEVVQRRPHfsyeDAVGLLGENSDLNEKLRA 991
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 361 SLR----ANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETlqeksqhkEELGaVRLRHEKEllgVRARY 436
Cdd:COG3096 992 RLEqaeeARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQEL--------EELG-VQADAEAE---ERARI 1059
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569008856 437 ERelRELHEdkkrqeeelrgQIREEKARTRELENlQHTVEELQaqvhsMDGAkgwfERRLKEAE 500
Cdd:COG3096 1060 RR--DELHE-----------ELSQNRSRRSQLEK-QLTRCEAE-----MDSL----QKRLRKAE 1100
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
190-497 |
2.01e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 2.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 190 RLQEELAKLSEKLKKKQESFCRLQTEKEtlfndsRNKIEELQQRKEAD-LKAQLArtqKLQQELEA----------ANQS 258
Cdd:COG3096 351 RYQEDLEELTERLEEQEEVVEEAAEQLA------EAEARLEAAEEEVDsLKSQLA---DYQQALDVqqtraiqyqqAVQA 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 259 LAELRDQRQGERL------EHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAktqelnMLREQTSE 332
Cdd:COG3096 422 LEKARALCGLPDLtpenaeDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGE------VERSQAWQ 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 333 LASELQHRQAEYEELMGQKDDLNSQLQESlranSRLLEQLQEIGQEKEQLTQDLQEARKSAEkrkvMLDELAME---TLQ 409
Cdd:COG3096 496 TARELLRRYRSQQALAQRLQQLRAQLAEL----EQRLRQQQNAERLLEEFCQRIGQQLDAAE----ELEELLAEleaQLE 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 410 EKSQHKEELGAVRLRHEKELLGVRARYER------ELRELHEDKKRQEEE--------------LRGQIREEKARTRELE 469
Cdd:COG3096 568 ELEEQAAEAVEQRSELRQQLEQLRARIKElaarapAWLAAQDALERLREQsgealadsqevtaaMQQLLEREREATVERD 647
|
330 340
....*....|....*....|....*...
gi 569008856 470 NLQHTVEELQAQVHSMDGAKGWFERRLK 497
Cdd:COG3096 648 ELAARKQALESQIERLSQPGGAEDPRLL 675
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
164-394 |
2.52e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 164 EMEREEKKLLWEQLqGLESSKQAETSRLQEELAKLSEKLKKKQESFCR---LQTEKETLFNDSRNKIEELQQRKEADLKA 240
Cdd:pfam17380 357 ERKRELERIRQEEI-AMEISRMRELERLQMERQQKNERVRQELEAARKvkiLEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 241 QLARTQKlQQELEAANQSLAELRDQRQGERLEHAAALRALQ----DQVSSQSADAQEQVEGLLAENSALRTSlAALEQIQ 316
Cdd:pfam17380 436 EVRRLEE-ERAREMERVRLEEQERQQQVERLRQQEEERKRKklelEKEKRDRKRAEEQRRKILEKELEERKQ-AMIEEER 513
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 569008856 317 TAKTQELNMLREQTSeLASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAE 394
Cdd:pfam17380 514 KRKLLEKEMEERQKA-IYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
188-428 |
2.54e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.83 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 188 TSRLQEELAKLSEKLKKKQESFCRLQTEKetlfndsrnKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQ 267
Cdd:NF012221 1537 TSESSQQADAVSKHAKQDDAAQNALADKE---------RAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETNGQAQ 1607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 268 GERLEHAAalRALQDQVSS-----QSADAQEQVEGLLAENSALRTSLAALEQIQTaktqelnmlreqtsELASELQHRQA 342
Cdd:NF012221 1608 RDAILEES--RAVTKELTTlaqglDALDSQATYAGESGDQWRNPFAGGLLDRVQE--------------QLDDAKKISGK 1671
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 343 EYEELMGQKDDLNSQLQESLRANSRLLEQLQeigQEKEQLTQDLQEARKSAEKRKvmLDELAMETLQEKSQHKEELGA-- 420
Cdd:NF012221 1672 QLADAKQRHVDNQQKVKDAVAKSEAGVAQGE---QNQANAEQDIDDAKADAEKRK--DDALAKQNEAQQAESDANAAAnd 1746
|
....*...
gi 569008856 421 VRLRHEKE 428
Cdd:NF012221 1747 AQSRGEQD 1754
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
157-385 |
2.84e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 157 AEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESF-----CRLQTEKETLFNDSRNKIEELQ 231
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkkaeeAKIKAEELKKAEEEKKKVEQLK 1639
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 232 QRKEADL-KAQLARTQKLQQELEAANQSLAELRDQRQGERL---EHAAALRALQDQVSSQSADAQEQVEGLLAENSALRT 307
Cdd:PTZ00121 1640 KKEAEEKkKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAkkaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 569008856 308 SLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQD 385
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
251-702 |
2.89e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.35 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 251 ELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEgllaENSALRTSLAALEQIQTAKTQELNMLREQT 330
Cdd:pfam05557 31 ELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAE----LNRLKKKYLEALNKKLNEKESQLADAREVI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 331 SELASELQHRQaeyEELMGQKDDLNSQLQESLRANSRLlEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQE 410
Cdd:pfam05557 107 SCLKNELSELR---RQIQRAELELQSTNSELEELQERL-DLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFE-IQS 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 411 KSQHKEELGAVRLRhekelLGVRARYERELRELHEDKKRqeeelrgqireekartreLENLQHTVEELQAQVHSMdgakg 490
Cdd:pfam05557 182 QEQDSEIVKNSKSE-----LARIPELEKELERLREHNKH------------------LNENIENKLLLKEEVEDL----- 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 491 wfERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEEL-----QNVREQLQQAQEERDGHVKTISNLKQEVKDTVD 565
Cdd:pfam05557 234 --KRKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLnlrspEDLSRRIEQLQQREIVLKEENSSLTSSARQLEK 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 566 GQRILEKKGSAVLKDLKrQLHLERKRADKLQERLQ-EILTNSKSRTGLEELVLS---EMN----SPSRTQTGDSSSVSSF 637
Cdd:pfam05557 312 ARRELEQELAQYLKKIE-DLNKKLKRHKALVRRLQrRVLLLTKERDGYRAILESydkELTmsnySPQLLERIEEAEDMTQ 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 638 SY---------------REILKEKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVS 702
Cdd:pfam05557 391 KMqahneemeaqlsvaeEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEME 470
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
360-602 |
3.01e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 360 ESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYErE 439
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELE-K 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 440 LRELHEDKKRQEEELRGQIREEKARTRELEN-----LQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETL 514
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlrVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 515 klcreEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADK 594
Cdd:TIGR02169 336 -----AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
|
....*...
gi 569008856 595 LQERLQEI 602
Cdd:TIGR02169 411 LQEELQRL 418
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
154-376 |
3.37e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 154 MPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRL---QEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEEL 230
Cdd:TIGR00618 655 LTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLtywKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDL 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 231 QQRKEADLKAQ-----LARTQKLQQELEAANQSLAELRDQRQGERLEHAAAlralqdQVSSQSADAQEQVEGLLAENSAL 305
Cdd:TIGR00618 735 AAREDALNQSLkelmhQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAA------EIQFFNRLREEDTHLLKTLEAEI 808
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008856 306 RTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIG 376
Cdd:TIGR00618 809 GQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLN 879
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
165-485 |
3.91e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 3.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 165 MEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLAR 244
Cdd:pfam12128 237 MKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 245 TQKLQQELEAANqslaelrdqrqgerlehAAALRALQDQVSSQSADaQEQVEGLLAENSALRTSLAALEQIQTAKTQELN 324
Cdd:pfam12128 317 VAKDRSELEALE-----------------DQHGAFLDADIETAAAD-QEQLPSWQSELENLEERLKALTGKHQDVTAKYN 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 325 MLREQTSE-----LASELQHRQAEYEELMGQKDDLNSQLQESLRA-NSRLLEQLQEIGQEKEQLTQDLQEArksaekrKV 398
Cdd:pfam12128 379 RRRSKIKEqnnrdIAGIKDKLAKIREARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKSRLGEL-------KL 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 399 MLDELAM--ETLQEKSQHKEELGAVRLRHEKEllgvRARYERELRELHEDKKRQEEELRgQIREEKARTRELEN-LQHTV 475
Cdd:pfam12128 452 RLNQATAtpELLLQLENFDERIERAREEQEAA----NAEVERLQSELRQARKRRDQASE-ALRQASRRLEERQSaLDELE 526
|
330
....*....|
gi 569008856 476 EELQAQVHSM 485
Cdd:pfam12128 527 LQLFPQAGTL 536
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
166-368 |
4.52e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 4.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 166 EREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKK-KQESFCRL-QTEKETLFNDSRNKIEELQQ----------- 232
Cdd:PRK11281 76 DRQKEET--EQLKQQLAQAPAKLRQAQAELEALKDDNDEeTRETLSTLsLRQLESRLAQTLDQLQNAQNdlaeynsqlvs 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 233 ------RKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRA--------------LQDQVSSQSADAQ 292
Cdd:PRK11281 154 lqtqpeRAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAqndlqrkslegntqLQDLLQKQRDYLT 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 293 EQVEGLLAENSALRTSL------AALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANS 366
Cdd:PRK11281 234 ARIQRLEHQLQLLQEAInskrltLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKN 313
|
..
gi 569008856 367 RL 368
Cdd:PRK11281 314 WL 315
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
182-314 |
4.60e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.42 E-value: 4.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 182 SSKQAETSRLQEELAKLSEKLKKKQESFCRLQtekETLfndsrnkieelqqrkeADLKAQLARTQKLQQELEAANQSLAE 261
Cdd:PRK09039 49 SGKDSALDRLNSQIAELADLLSLERQGNQDLQ---DSV----------------ANLRASLSAAEAERSRLQALLAELAG 109
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 569008856 262 LRDQRQGERLEHAAALRALQDQvssqSADAQEQVEGLLAENSALRTSLAALEQ 314
Cdd:PRK09039 110 AGAAAEGRAGELAQELDSEKQV----SARALAQVELLNQQIAALRRQLAALEA 158
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
216-584 |
6.12e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 6.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 216 KETLFNDSRNKIEELQQR------------------KEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAAL 277
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMmlshegvlqeirsilvdfEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 278 RALQDQVSSQSADAQEQVEGLLAENSalrtslAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQ 357
Cdd:pfam15921 241 FPVEDQLEALKSESQNKIELLLQQHQ------DRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSM 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 358 LQESLRANSRLLEQLQEIGQEKEQLTQDLQEarkSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARyE 437
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRMYEDKIE---ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKR-E 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 438 RELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG-AKGWFERRLKEAEESLQQQQQEQEETlkl 516
Cdd:pfam15921 391 KELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSeCQGQMERQMAAIQGKNESLEKVSSLT--- 467
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008856 517 creehaAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTvdgQRILEKKGSAVLK-----DLKRQ 584
Cdd:pfam15921 468 ------AQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEK---ERAIEATNAEITKlrsrvDLKLQ 531
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
166-443 |
6.41e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 6.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 166 EREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLart 245
Cdd:PRK03918 519 ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL-AELLKELEELGFESVEELEERL--- 594
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 246 qklqQELEAANQSLAELRDQRQgeRLEhaaALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQElnM 325
Cdd:PRK03918 595 ----KELEPFYNEYLELKDAEK--ELE---REEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE--E 663
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 326 LREQTSELASELQHRQAEYEELMGQKDDLNSQLqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAM 405
Cdd:PRK03918 664 LREEYLELSRELAGLRAELEELEKRREEIKKTL-EKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERAL 742
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 569008856 406 ETLQE-KSQHKEEL-----GAVRLRHEKELLGVRARYERELREL 443
Cdd:PRK03918 743 SKVGEiASEIFEELtegkySGVRVKAEENKVKLFVVYQGKERPL 786
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
193-495 |
6.63e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.13 E-value: 6.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 193 EELAKLSEKLKKKQESFCRLQTEKETLFNDSRNkIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLE 272
Cdd:pfam19220 41 RELPQAKSRLLELEALLAQERAAYGKLRRELAG-LTRRLSAAEGELEELVARLAKLEAALREAEAAKEELR-IELRDKTA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 273 HAAALRAlqdqvssQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKD 352
Cdd:pfam19220 119 QAEALER-------QLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 353 DLNSQLQEslraNSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvmldELAMETLQ-EKSQHKEELGAVRLRH---EKE 428
Cdd:pfam19220 192 ELTRRLAE----LETQLDATRARLRALEGQLAAEQAERERAEAQL----EEAVEAHRaERASLRMKLEALTARAaatEQL 263
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008856 429 LLGVRARyereLRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERR 495
Cdd:pfam19220 264 LAEARNQ----LRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEER 326
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
155-497 |
6.65e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 6.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 155 PLAEVELKWEMEREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQT---EKETLFNDSRNKIEELQ 231
Cdd:TIGR00606 708 PDKLKSTESELKKKEKRR--DEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNdieEQETLLGTIMPEEESAK 785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 232 qrkeaDLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAAlralqdQVSSQSADAQEQVEGLLAENSALRT-SLA 310
Cdd:TIGR00606 786 -----VCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQ------QVNQEKQEKQHELDTVVSKIELNRKlIQD 854
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 311 ALEQIQT--AKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQE 388
Cdd:TIGR00606 855 QQEQIQHlkSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET 934
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 389 ARKSAE------KRKVMLDELAMETLQEKSQHKEElgAVRLRHEKELLGV----------RARYERELRELHED---KKR 449
Cdd:TIGR00606 935 SNKKAQdkvndiKEKVKNIHGYMKDIENKIQDGKD--DYLKQKETELNTVnaqleecekhQEKINEDMRLMRQDidtQKI 1012
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 569008856 450 QEEELRGQ----IREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLK 497
Cdd:TIGR00606 1013 QERWLQDNltlrKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENID 1064
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
324-614 |
7.17e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 7.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 324 NMLRE-QTSELASELQhrqAEYEELMGQKDDLnsqlqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDE 402
Cdd:COG4913 216 YMLEEpDTFEAADALV---EHFDDLERAHEAL-----EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 403 LAMETLQEKSQhkeelgavRLRHEKELLGVRaryERELRELHEDKKRQEEELRGQIREEKarTRELENLQHTVEELQAQV 482
Cdd:COG4913 288 RRLELLEAELE--------ELRAELARLEAE---LERLEARLDALREELDELEAQIRGNG--GDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 483 hsmdgakgwfERRLKEaeeslqqqqqeqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKD 562
Cdd:COG4913 355 ----------EERERR-------------------RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 569008856 563 TVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEE 614
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDE 457
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
156-618 |
1.02e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 156 LAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKE 235
Cdd:pfam02463 376 LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEK 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 236 ADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADA-----QEQVEGLLAENSALRTSLA 310
Cdd:pfam02463 456 QELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVllaliKDGVGGRIISAHGRLGDLG 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 311 -ALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEA 389
Cdd:pfam02463 536 vAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 390 RkSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREE-------- 461
Cdd:pfam02463 616 D-EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAEselakeei 694
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 462 KARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQ 541
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008856 542 AQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLS 618
Cdd:pfam02463 775 ELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKL 851
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
191-381 |
1.18e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 191 LQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQqrkeadlkaqlARTQKLQQELEAANQSLAELRDQRQGER 270
Cdd:pfam15921 651 IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEME-----------TTTNKLKMQLKSAQSELEQTRNTLKSME 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 271 LEHAAALRAlqdqvssqSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQ 350
Cdd:pfam15921 720 GSDGHAMKV--------AMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 569008856 351 KDDLNSQ----------LQESLRANSRLLEQLQEIGQEKEQ 381
Cdd:pfam15921 792 LEVLRSQerrlkekvanMEVALDKASLQFAECQDIIQRQEQ 832
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
168-470 |
1.20e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 42.25 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 168 EEKKLLWEQLQGLESSKQAET--SRLQEELAKLS-EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLAR 244
Cdd:COG5185 233 EALKGFQDPESELEDLAQTSDklEKLVEQNTDLRlEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 245 TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENsALRTSLAALEQIQtaktQELN 324
Cdd:COG5185 313 SLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEV-ELSKSSEELDSFK----DTIE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 325 MLREqtselASELQHRQAEyeelmGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELA 404
Cdd:COG5185 388 STKE-----SLDEIPQNQR-----GYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREA 457
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008856 405 METLQEKSQHKEELGAVRLRHEKELLGVRA-RYERELRELhedkKRQEEELRGQIREEKARTRELEN 470
Cdd:COG5185 458 DEESQSRLEEAYDEINRSVRSKKEDLNEELtQIESRVSTL----KATLEKLRAKLERQLEGVRSKLD 520
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
156-312 |
1.27e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 156 LAEVELKWEMEREEKKLLWE--QLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQR 233
Cdd:COG3096 521 LAELEQRLRQQQNAERLLEEfcQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569008856 234 KEADLKAQlARTQKLQQELEAANQSLAELRDQRQgERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAAL 312
Cdd:COG3096 601 APAWLAAQ-DALERLREQSGEALADSQEVTAAMQ-QLLEREREATVERDELAARKQALESQIERLSQPGGAEDPRLLAL 677
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
74-418 |
1.39e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 74 LCSQLEQLELENRQLKEgvpgaAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEgqgdppgdVLPTPLAP 153
Cdd:TIGR00618 526 LTRRMQRGEQTYAQLET-----SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE--------DIPNLQNI 592
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 154 MPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQT-----EKETLFNDSRNKIE 228
Cdd:TIGR00618 593 TVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLtltqeRVREHALSIRVLPK 672
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 229 ELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQrqgerLEHAAALRALQDQVSSQSADAQEQVEGllaENSALRTS 308
Cdd:TIGR00618 673 ELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLREL-----ETHIEEYDREFNEIENASSSLGSDLAA---REDALNQS 744
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 309 LAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQ--------LQEIGQEKE 380
Cdd:TIGR00618 745 LKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEigqeipsdEDILNLQCE 824
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 569008856 381 QLTQDLQEARKSAEKRKVMLDELAMETLQ--EKSQHKEEL 418
Cdd:TIGR00618 825 TLVQEEEQFLSRLEEKSATLGEITHQLLKyeECSKQLAQL 864
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
185-601 |
1.79e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 185 QAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL----------------FNDSRNKIEELQQRKEADLKAQLART--- 245
Cdd:pfam01576 95 QNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTeakikkleedillledQNSKLSKERKLLEERISEFTSNLAEEeek 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 246 ----QKLQQELEAANQSLAELRDQRQGERLEHAAALRALQdqvsSQSADAQEQVEGLLAENSALRTSLAaleqiqtAKTQ 321
Cdd:pfam01576 175 akslSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLE----GESTDLQEQIAELQAQIAELRAQLA-------KKEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 322 ELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvmld 401
Cdd:pfam01576 244 ELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQ---- 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 402 ELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEdkkRQEEELRGQIREEKARtrelENLQHTVEELQAQ 481
Cdd:pfam01576 320 ELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTE---QLEQAKRNKANLEKAK----QALESENAELQAE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 482 VHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVK 561
Cdd:pfam01576 393 LRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQ-RAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQ 471
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 569008856 562 DTvdgQRILEKKGSAVLKDLKRQLHLERKRADkLQERLQE 601
Cdd:pfam01576 472 DT---QELLQEETRQKLNLSTRLRQLEDERNS-LQEQLEE 507
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
176-490 |
1.82e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 176 QLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFND--SRNKIEELQQRKEADLKAQLAR------TQK 247
Cdd:pfam01576 237 QLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESEraARNKAEKQRRDLGEELEALKTEledtldTTA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 248 LQQELEAA-NQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNML 326
Cdd:pfam01576 317 AQQELRSKrEQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 327 reQTSELASELQHRQAEyeelmGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--- 403
Cdd:pfam01576 397 --QQAKQDSEHKRKKLE-----GQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLesq 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 404 ---AMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELR--------------ELHEDKKRQEEELRGQIREEKAR-- 464
Cdd:pfam01576 470 lqdTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEakrnverqlstlqaQLSDMKKKLEEDAGTLEALEEGKkr 549
|
330 340
....*....|....*....|....*..
gi 569008856 465 -TRELENLQHTVEELQAQVHSMDGAKG 490
Cdd:pfam01576 550 lQRELEALTQQLEEKAAAYDKLEKTKN 576
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
281-472 |
1.98e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 281 QDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQE 360
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 361 SLRANSRL---------------LEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDelamETLQEKSQHKEELGAVRlrh 425
Cdd:COG3883 98 SGGSVSYLdvllgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELE----AKLAELEALKAELEAAK--- 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 569008856 426 eKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQ 472
Cdd:COG3883 171 -AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
192-392 |
2.20e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 41.90 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 192 QEELAKLSEKLKKKQESFCRlQTEKETLFNDSRNKIEELQQRKE---ADLKAQLARTQKLQQE--LEAANQSLAELrdQR 266
Cdd:pfam13779 508 DEEIAKLMQELREALDDYMQ-ALAEQAQQNPQDLQQPDDPNAQEmtqQDLQRMLDRIEELARSgrRAEAQQMLSQL--QQ 584
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 267 QGERLEhAAALRALQDQVSSQSADAQEQVEGLLAENSAL-----RTSLAALEQIQTAKTQELNMLREQTSELASELQHRQ 341
Cdd:pfam13779 585 MLENLQ-AGQPQQQQQQGQSEMQQAMDELGDLLREQQQLldetfRQLQQQGGQQQGQPGQQGQQGQGQQPGQGGQQPGAQ 663
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 569008856 342 AEYEELMGQKDDLNSQlQESLRanSRLLEQLQEIGQEK-EQLTQDLQEARKS 392
Cdd:pfam13779 664 MPPQGGAEALGDLAER-QQALR--RRLEELQDELKELGgKEPGQALGDAGRA 712
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
215-497 |
2.55e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 215 EKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlehaaALRALQDQVSSQSADAQEQ 294
Cdd:COG4372 10 KARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELE--------QLEEELEQARSELEQLEEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 295 VEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQE 374
Cdd:COG4372 82 LEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLES 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 375 IGQEKEQLTQDLQ-----EARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKR 449
Cdd:COG4372 162 LQEELAALEQELQalseaEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDA 241
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 569008856 450 QEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLK 497
Cdd:COG4372 242 LELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALE 289
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
170-296 |
2.80e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.77 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 170 KKLLWEQLQGLESSKQaetsRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKEADLKAQLARTQKLQ 249
Cdd:smart00787 146 KEGLDENLEGLKEDYK----LLMKELELLNSIKPKLRDRKDALEEELRQL----KQLEDELEDCDPTELDRAKEKLKKLL 217
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 569008856 250 QELEAANQSLAELRDQRQgERLEHAAALRALQDQVSSQSADAQEQVE 296
Cdd:smart00787 218 QEIMIKVKKLEELEEELQ-ELESKIEDLTNKKSELNTEIAEAEKKLE 263
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
164-453 |
2.84e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 164 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKlkkkqesfcrlQTEKETLFNDSRNKIEELQQRKEADLKAQLA 243
Cdd:pfam07888 58 EKEKERYKRDREQWERQRRELESRVAELKEELRQSREK-----------HEELEEKYKELSASSEELSEEKDALLAQRAA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 244 RTQKLQqELEAANQSLA------ELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQT 317
Cdd:pfam07888 127 HEARIR-ELEEDIKTLTqrvlerETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRD 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 318 AKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRK 397
Cdd:pfam07888 206 TQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLT 285
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 569008856 398 VMLDELAMETLQEKSQHKEELGAVRLRHEKEllgvRARYERELRELHEDKKRQEEE 453
Cdd:pfam07888 286 LQLADASLALREGRARWAQERETLQQSAEAD----KDRIEKLSAELQRLEERLQEE 337
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
249-386 |
2.96e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 249 QQELEAANQSLAELRDQRQGERlehaaalralqdqvsSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLRE 328
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLER---------------QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008856 329 QTSELASELQHRQAEYEELMGQKDDLNSQ---LQESLRANSRLLEQLQEIGQEKEQLTQDL 386
Cdd:PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQiaaLRRQLAALEAALDASEKRDRESQAKIADL 177
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
223-402 |
3.03e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.48 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 223 SRNKIEELQQRKEADLKAQLARTQKLQQEL------------EAANQSLAELRDQRQGERLEHAAA---LRALQDQVSSQ 287
Cdd:PRK11448 51 ALLGIYEPPCENQHDLLRRLGKEGFLPDEIldvfhklrkignKAVHEFHGDHREALMGLKLAFRLAvwfHRTYGKDWDFK 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 288 SADAQEQVEgllaensalrtSLAALEQIQtaktQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSR 367
Cdd:PRK11448 131 PGPFVPPED-----------PENLLHALQ----QEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQE 195
|
170 180 190
....*....|....*....|....*....|....*...
gi 569008856 368 LLEQLQEIGQEKEQLTQDLQEARKSAEKR---KVMLDE 402
Cdd:PRK11448 196 LEAQLEQLQEKAAETSQERKQKRKEITDQaakRLELSE 233
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
198-292 |
3.37e-03 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 40.86 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 198 LSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQ------QRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQ---- 267
Cdd:PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQasvhqlDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMiaev 423
|
90 100 110
....*....|....*....|....*....|
gi 569008856 268 GERLEHAAALRALQDQVSS-----QSADAQ 292
Cdd:PRK06975 424 EQMLSSASQQLQLTGNVQLalialQNADAR 453
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
7-344 |
3.38e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVVPCYRLRLRFPAFPApELSSLRQKVAYLDKEFSKAQklcSQLEQLELENR 86
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAE-ELEELQQRLAELEEELEEAQ---EELEELEEELE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 87 QLKEGVPGAAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEGQGDPPGDVLPTPLAPMPLAEVELKWEME 166
Cdd:COG4717 231 QLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAL 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 167 REEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL-FNDSRNKIEELQQRKEADLKAQLART 245
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELqLEELEQEIAALLAEAGVEDEEELRAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 246 QKLQQELEAANQSLAELRDQRQGERLEHAAALRALQ-DQVSSQSADAQEQVEGLLAENSALRTSLAALEQI--QTAKTQE 322
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDeEELEEELEELEEELEELEEELEELREELAELEAEleQLEEDGE 470
|
330 340
....*....|....*....|..
gi 569008856 323 LNMLREQTSELASELQHRQAEY 344
Cdd:COG4717 471 LAELLQELEELKAELRELAEEW 492
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
185-478 |
3.50e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.96 E-value: 3.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 185 QAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNkIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRD 264
Cdd:pfam10174 344 QTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRD-LKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKE 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 265 QRQG------------ERLEHAAA-----LRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLR 327
Cdd:pfam10174 423 RVKSlqtdssntdtalTTLEEALSekeriIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLK 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 328 EQTSELASELQHRQAEYEEL---MGQKDDLNSQLQESLRANSRLLEQLQ---EIGQEKEQLTQDLQEARKSAEKRKVMLD 401
Cdd:pfam10174 503 EHASSLASSGLKKDSKLKSLeiaVEQKKEECSKLENQLKKAHNAEEAVRtnpEINDRIRLLEQEVARYKEESGKAQAEVE 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 402 ELaMETLQE-------KSQHKEELGAVRLRHEKEllgvRARYERELREL-HEDKKRQEEELRGQIREEKARTRELENLQh 473
Cdd:pfam10174 583 RL-LGILREvenekndKDKKIAELESLTLRQMKE----QNKKVANIKHGqQEMKKKGAQLLEEARRREDNLADNSQQLQ- 656
|
....*
gi 569008856 474 tVEEL 478
Cdd:pfam10174 657 -LEEL 660
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
175-393 |
3.73e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 175 EQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRkEADLKAQLARTQKLQQELEA 254
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKL----QAEIAEAEAE-IEERREELGERARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 255 ANQSLAELRDQRQ-GERLEHAAALRALQDQVSS---QSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQT 330
Cdd:COG3883 101 SVSYLDVLLGSESfSDFLDRLSALSKIADADADlleELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008856 331 SELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSA 393
Cdd:COG3883 181 EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 243
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
160-469 |
3.84e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 3.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 160 ELKWEMEREEKkllweqLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEketlfnDSRNKIEELQQRKEADLK 239
Cdd:pfam17380 307 EKAREVERRRK------LEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE------ERKRELERIRQEEIAMEI 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 240 AQLARTQKLQQELEAANqslaelrdQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSlaALEQIQTAK 319
Cdd:pfam17380 375 SRMRELERLQMERQQKN--------ERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR--EVRRLEEER 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 320 TQELNMLREqtselasELQHRQAEYEELMGQKDDLNSQLQESLRANsrllEQLQEIGQEKEQLTQDLQEARKSA---EKR 396
Cdd:pfam17380 445 AREMERVRL-------EEQERQQQVERLRQQEEERKRKKLELEKEK----RDRKRAEEQRRKILEKELEERKQAmieEER 513
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569008856 397 KVMLDELAMETLQEK-SQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKR-----QEEELRGQIREEKARTRELE 469
Cdd:pfam17380 514 KRKLLEKEMEERQKAiYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRleameREREMMRQIVESEKARAEYE 592
|
|
| OmpH |
pfam03938 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
169-261 |
4.28e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 461098 [Multi-domain] Cd Length: 140 Bit Score: 38.33 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 169 EKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADL-KAQLARTQK 247
Cdd:pfam03938 16 EGKAAQAQLEKKFKKRQAELEAKQKELQKLYEELQKDGALLEEEREEKEQELQKKEQELQQLQQKAQQELqKKQQELLQP 95
|
90
....*....|....
gi 569008856 248 LQQELEAANQSLAE 261
Cdd:pfam03938 96 IQDKINKAIKEVAK 109
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
278-546 |
5.88e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 278 RALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASElQHRQAEYEELMGQKDDLNSQ 357
Cdd:pfam17380 287 RQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAME-RERELERIRQEERKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 358 LQESLR---ANSRLLEQLQ-EIGQEKEQLTQDLQEARK-----SAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKE 428
Cdd:pfam17380 366 RQEEIAmeiSRMRELERLQmERQQKNERVRQELEAARKvkileEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 429 LLGVRARYERELRELHEDKKRQEEELR----GQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQ 504
Cdd:pfam17380 446 REMERVRLEEQERQQQVERLRQQEEERkrkkLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEER 525
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 569008856 505 QQQQEQEETLKLCREEHAAELKGkdEELQNVREQLQQAQEER 546
Cdd:pfam17380 526 QKAIYEEERRREAEEERRKQQEM--EERRRIQEQMRKATEER 565
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
168-606 |
6.78e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 168 EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKET---LFNDSRNKIEELQQRKEADLKAQLAR 244
Cdd:pfam01576 496 DERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGkkrLQRELEALTQQLEEKAAAYDKLEKTK 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 245 TqKLQQELEAAnqsLAELRDQRQ-----GERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAaleqiqtak 319
Cdd:pfam01576 576 N-RLQQELDDL---LVDLDHQRQlvsnlEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLA--------- 642
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 320 tQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSaekrkvm 399
Cdd:pfam01576 643 -RALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDA------- 714
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 400 ldelametlqeksqhkeelgavRLRHEKELLGVRARYERELR---ELHEDKKRQ--------EEELRGQIREEKARTREL 468
Cdd:pfam01576 715 ----------------------KLRLEVNMQALKAQFERDLQardEQGEEKRRQlvkqvrelEAELEDERKQRAQAVAAK 772
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 469 ENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETlKLCREEHAAELKGKDEELQNVREQLQQAQEE--- 545
Cdd:pfam01576 773 KKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEA-RASRDEILAQSKESEKKLKNLEAELLQLQEDlaa 851
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008856 546 RDGHVKTISNLKQEVKDTVDGQrileKKGSAVLKDLKRQLHlerKRADKLQERLQEILTNS 606
Cdd:pfam01576 852 SERARRQAQQERDELADEIASG----ASGKSALQDEKRRLE---ARIAQLEEELEEEQSNT 905
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
220-375 |
7.42e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.84 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 220 FNDSRNKIEELQQRKEADLKAQLARTQKLQ-QELEAAnqsLAELRDQRQGERLEHAAALRALQDQVSSQS----ADAQEQ 294
Cdd:COG2433 345 YDAYKNKFERVEKKVPPDVDRDEVKARVIRgLSIEEA---LEELIEKELPEEEPEAEREKEHEERELTEEeeeiRRLEEQ 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 295 VEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELA---SELQHRQAEYEELmgqKDDLNsQLQESLRANSRLLEQ 371
Cdd:COG2433 422 VERLEAEVEELEAELEEKDERIERLERELSEARSEERREIrkdREISRLDREIERL---ERELE-EERERIEELKRKLER 497
|
....
gi 569008856 372 LQEI 375
Cdd:COG2433 498 LKEL 501
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
153-380 |
7.87e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 39.78 E-value: 7.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 153 PMPLAEVELKWEMEREEKKLLWEQlqglessKQAETSRLQEELAKLSEKLKKKQESfCRLQTEKETLFNDSRNKIEE--- 229
Cdd:PRK10246 656 TLPQEDEEASWLATRQQEAQSWQQ-------RQNELTALQNRIQQLTPLLETLPQS-DDLPHSEETVALDNWRQVHEqcl 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 230 -LQ---QRKEADLKAQLARTQKLQQELEAANQS---------LAELRDQRQGERLE-HAAALRALQDQVSSQSADAQEQV 295
Cdd:PRK10246 728 sLHsqlQTLQQQDVLEAQRLQKAQAQFDTALQAsvfddqqafLAALLDEETLTQLEqLKQNLENQRQQAQTLVTQTAQAL 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 296 EGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSelaselqhRQAEYEELMGQKDDLNSQLQEslransrLLEQLQEI 375
Cdd:PRK10246 808 AQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTT--------RQGEIRQQLKQDADNRQQQQA-------LMQQIAQA 872
|
....*
gi 569008856 376 GQEKE 380
Cdd:PRK10246 873 TQQVE 877
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
53-276 |
8.41e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 8.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 53 ELSSLRQKVAYLDKEFSKAQK----LCSQLEQLELENRQLKEGVPGAAG--AHVDGELLRLQAENTALQKNMAALQERYG 126
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKeekaLLKQLAALERRIAALARRIRALEQelAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 127 KEAVRPSAVGEgqgDPPGDVLptpLAPMPLAEVELKWEMEREEKKLLWEQLQGLesskQAETSRLQEELAKLSEKLKKKQ 206
Cdd:COG4942 108 ELLRALYRLGR---QPPLALL---LSPEDFLDAVRRLQYLKYLAPARREQAEEL----RADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 207 ESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAA 276
Cdd:COG4942 178 ALLAELEEERAAL-EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
221-452 |
9.16e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 39.29 E-value: 9.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 221 NDSRNKIEELQQ---RKEADLKAQLARTQKLQQELEAANQSLAE----LRD-QRQGERLEH-----AAALRALQDQVSSQ 287
Cdd:PRK11637 43 SDNRDQLKSIQQdiaAKEKSVRQQQQQRASLLAQLKKQEEAISQasrkLREtQNTLNQLNKqidelNASIAKLEQQQAAQ 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 288 SADAQEQ------------VEGLLAENSALRTS--LAALEQIQTAKTQELNMLREQTSELA---SELQHRQAEYEELMGQ 350
Cdd:PRK11637 123 ERLLAAQldaafrqgehtgLQLILSGEESQRGEriLAYFGYLNQARQETIAELKQTREELAaqkAELEEKQSQQKTLLYE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 351 KDDLNSQLQESLRANSRLLEQLqEIGQEKEQltQDLQEARKSaEKRkvMLDELAmetlqeksqhkeelgavrlRHEKEll 430
Cdd:PRK11637 203 QQAQQQKLEQARNERKKTLTGL-ESSLQKDQ--QQLSELRAN-ESR--LRDSIA-------------------RAERE-- 255
|
250 260
....*....|....*....|..
gi 569008856 431 gVRARYERELRELHEDKKRQEE 452
Cdd:PRK11637 256 -AKARAEREAREAARVRDKQKQ 276
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
221-545 |
9.18e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 9.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 221 NDSRNKIEElqqrkEADLKAQLARTQKlqqELEAANQSLAELRDqrqgERLEHAAALRALQDQVSSQSADAQEQVEGLLA 300
Cdd:PRK04863 279 NERRVHLEE-----ALELRRELYTSRR---QLAAEQYRLVEMAR----ELAELNEAESDLEQDYQAASDHLNLVQTALRQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 301 ENSALRTSlAALEQIqTAKTQELNMLREQTSELASELQHRQAEYEElmgQKDDLNSQLQESLRAnsrlLEQLQEIGQEKE 380
Cdd:PRK04863 347 QEKIERYQ-ADLEEL-EERLEEQNEVVEEADEQQEENEARAEAAEE---EVDELKSQLADYQQA----LDVQQTRAIQYQ 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 381 QLTQDLQEARKSAEKRKVMLDELamETLQEKSQHKEELGAVRLRHEKELLGV----RARYERELRELH--------EDKK 448
Cdd:PRK04863 418 QAVQALERAKQLCGLPDLTADNA--EDWLEEFQAKEQEATEELLSLEQKLSVaqaaHSQFEQAYQLVRkiagevsrSEAW 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008856 449 RQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAkgwfeRRLKEAEESLQQQQQEQEETLKLCREEHAAELKGK 528
Cdd:PRK04863 496 DVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRA-----ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESL 570
|
330 340
....*....|....*....|
gi 569008856 529 DEELQNVREQ---LQQAQEE 545
Cdd:PRK04863 571 SESVSEARERrmaLRQQLEQ 590
|
|
| |
