|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
213-277 |
1.61e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.75 E-value: 1.61e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 213 VGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 277
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
7.92e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 7.92e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
213-278 |
4.92e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 4.92e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 213 VGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 278
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
3.34e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 3.34e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
900-1797 |
8.05e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 110.15 E-value: 8.05e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 900 QDLKAKYEKAS--SETKTKHEEILQNLqkmlADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYL--------LTSA 969
Cdd:TIGR02168 155 EERRAIFEEAAgiSKYKERRKETERKL----ERTRENLDRLEDILNELERQLKSLERQAEKAERYKELkaelreleLALL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 970 KKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEEKQVAEKR 1049
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1050 YQQEHRDRESLVAEREKLLKEINAAQEELlkmhmendsleaskVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQvkk 1129
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEEL--------------AELEEKLEELKEELESLEAELEELEAELEELESR--- 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1130 ltaenlvlVKDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENllQTNRDLQFEKD 1209
Cdd:TIGR02168 374 --------LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1210 TLRQGQEKLSASLEAtlqvkqlLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEeiktcraitdseciqll 1289
Cdd:TIGR02168 444 ELEEELEELQEELER-------LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE----------------- 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1290 hEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEMGLNEKITYLTSE------KEVACQKVAKLKKQQDSLL 1363
Cdd:TIGR02168 500 -NLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVEnlnaakKAIAFLKQNELGRVTFLPL 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1364 KEKSALELQ-NGDLLADRESSIKTIGDLRRKYDQEAtnrRIVMQEkmkLLGNI---DALKKELQERKKENQELTSSKCDL 1439
Cdd:TIGR02168 579 DSIKGTEIQgNDREILKNIEGFLGVAKDLVKFDPKL---RKALSY---LLGGVlvvDDLDNALELAKKLRPGYRIVTLDG 652
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1440 SLLLKEAQDAKKNLEKEHTsmIQAKDNlnaELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQtlilEKEARAKESET 1519
Cdd:TIGR02168 653 DLVRPGGVITGGSAKTNSS--ILERRR---EIEELEEKIEELEEKIAELEKALAELRKELEELEE----ELEQLRKELEE 723
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1520 SLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSK 1599
Cdd:TIGR02168 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1600 SKLELQELHSCLTKILDDLRLNHEVALTERAEV---LQDNKNLLAEKREMMLRNEEALKE----KEKLEESYFILQKEIS 1672
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRERLESLERRIAATerrLEDLEEQIEELSEDIESLAAEIEEleelIEELESELEALLNERA 883
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1673 QLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAMQIME---------QMTKEKTETLASLE 1743
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNlqerlseeySLTLEEAEALENKI 963
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*....
gi 568937390 1744 DTKQTNAR-----LQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQA 1797
Cdd:TIGR02168 964 EDDEEEARrrlkrLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
610-1365 |
1.19e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.20 E-value: 1.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 610 AELKTQIERLRLdyQHEI-ESLQSKQDSERSAHAkemetmqAKLMKIIKEKEDSLEAVKARLDSAEDQHlvemEDTLNKL 688
Cdd:TIGR02168 196 NELERQLKSLER--QAEKaERYKELKAELRELEL-------ALLVLRLEELREELEELQEELKEAEEEL----EELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 689 QEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVL 768
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 769 SSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANEN 848
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 849 ASFLQKSIGEVTLKAEQSQ----QQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEtKTKHEEILQNL 924
Cdd:TIGR02168 423 IEELLKKLEEAELKELQAEleelEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR-LDSLERLQENL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 925 Q------KMLADTEDKLKAAQEANRDLMQDMEELKTQADKA--KSLTYLLT----SAKKEIEVMSEELRG--------LK 984
Cdd:TIGR02168 502 EgfsegvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAlgGRLQAVVVenlnAAKKAIAFLKQNELGrvtflpldSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 985 SEKQLYAQEANALKLEKG--SLLSKLIEVETKITLLQED-------QQKLWSVNETLHLEKER---VSEEKQVAEKRY-- 1050
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGflGVAKDLVKFDPKLRKALSYllggvlvVDDLDNALELAKKLRPGyriVTLDGDLVRPGGvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1051 QQEHRDRESLV----AEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQ 1126
Cdd:TIGR02168 662 TGGSAKTNSSIlerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1127 VKKLTAEnlvlvkdkddvIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQF 1206
Cdd:TIGR02168 742 VEQLEER-----------IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1207 EKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECI 1286
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568937390 1287 QLLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKE 1365
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
649-1455 |
3.19e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 3.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 649 QAKLMKIIKEKEDSLEAVKARLDSAEdqhLVEMEDTLNKLQEAEIKANSITKELQEKelvltglqdslnqvnqvKETLEK 728
Cdd:TIGR02168 208 QAEKAERYKELKAELRELELALLVLR---LEELREELEELQEELKEAEEELEELTAE-----------------LQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 729 ELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIA 808
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 809 EIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIgevtlKAEQSQQQAARKHEEEKKELEEKLLEL 888
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI-----ASLNNEIERLEARLERLEDRRERLQQE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 889 EKKMEtsynqcQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLts 968
Cdd:TIGR02168 423 IEELL------KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-- 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 969 akkeiEVMSEELRGLKSEKQLYAQEANALKLEKGsLLSKLIEVETKI-----TLLQEDQQKLWSVNETL------HLEKE 1037
Cdd:TIGR02168 495 -----ERLQENLEGFSEGVKALLKNQSGLSGILG-VLSELISVDEGYeaaieAALGGRLQAVVVENLNAakkaiaFLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1038 RVS------------EEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELL-KMHMENDSLEASKVSMQVLIEELRF 1104
Cdd:TIGR02168 569 ELGrvtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLgGVLVVDDLDNALELAKKLRPGYRIV 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1105 CKD----------------KLMAMSEKaRAEKEHLEGQVKKLTAEnlvlVKDKDDVIQKLQSAYEELVKDQKALVQEIED 1168
Cdd:TIGR02168 649 TLDgdlvrpggvitggsakTNSSILER-RREIEELEEKIEELEEK----IAELEKALAELRKELEELEEELEQLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1169 LTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCASK 1248
Cdd:TIGR02168 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1249 ALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERTL---LAEKEELLSENRIITEKLSKQSE 1325
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLaaeIEELEELIEELESELEALLNERA 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1326 EVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDL--------------R 1391
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEysltleeaealenkI 963
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568937390 1392 RKYDQEATNRRIVMQEKMKLLG--NIDALkKELQERKKENQELTSSKCDLslllkeaQDAKKNLEK 1455
Cdd:TIGR02168 964 EDDEEEARRRLKRLENKIKELGpvNLAAI-EEYEELKERYDFLTAQKEDL-------TEAKETLEE 1021
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
533-1310 |
1.45e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 86.66 E-value: 1.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 533 REEAFQKEIKALHTATEKLSKENEslrskldhaNKENSDVIALWKSKLE-TAIASHQQAMEELKVSFSKGIGTDSAEFAE 611
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRRERE---------KAERYQALLKEKREYEgYELLKEKEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 612 LKTQIERLRLDYqHEIESLqskqdseRSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEA 691
Cdd:TIGR02169 256 LTEEISELEKRL-EEIEQL-------LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 692 EI-------KANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLH----- 759
Cdd:TIGR02169 328 EAeidkllaEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINelkre 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 760 --QKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEE 837
Cdd:TIGR02169 408 ldRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 838 LQLKLTKANENAS--------------FLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLk 903
Cdd:TIGR02169 488 LQRELAEAEAQARaseervrggraveeVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIEL- 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 904 AKYEKASSET-----KTKHEEILQNLQKM---------LADTEDKLKAA-QEANRD--LMQDMEELKTQ----------- 955
Cdd:TIGR02169 567 LKRRKAGRATflplnKMRDERRDLSILSEdgvigfavdLVEFDPKYEPAfKYVFGDtlVVEDIEAARRLmgkyrmvtleg 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 956 ------------ADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQ 1023
Cdd:TIGR02169 647 elfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1024 KLwsvnetlhLEKERVSEEKQVAEKRYQQE-HRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQvlIEEL 1102
Cdd:TIGR02169 727 QL--------EQEEEKLKERLEELEEDLSSlEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEI 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1103 RFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLvkdkDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMS 1182
Cdd:TIGR02169 797 QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL----EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1183 LDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLdcasKALRKAELDMRQLQT 1262
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL----SEIEDPKGEDEEIPE 948
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 1263 SNSSLTKLLEEIKTC-RAITDSECIQLLHEKE---------SLAASERTLLAEKEELL 1310
Cdd:TIGR02169 949 EELSLEDVQAELQRVeEEIRALEPVNMLAIQEyeevlkrldELKEKRAKLEEERKAIL 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
828-1674 |
2.03e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 2.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 828 LRLKERSvEELQLKLTKANENASFLQKSIGEV--TLKAEQSQQQAARKHEEEKKELEEKLLelekkmETSYNQCQDLKAK 905
Cdd:TIGR02168 168 SKYKERR-KETERKLERTRENLDRLEDILNELerQLKSLERQAEKAERYKELKAELRELEL------ALLVLRLEELREE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 906 YEKAssetktkhEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRglKS 985
Cdd:TIGR02168 241 LEEL--------QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR--ER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 986 EKQLYAQEAnALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAERE 1065
Cdd:TIGR02168 311 LANLERQLE-ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1066 KLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRfckdklmamSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVI 1145
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL---------KKLEEAELKELQAELEELEEELEELQEELERLE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1146 QKLQSAYEELVKDQKALVQEIEDLtTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQG---QEKLSASL 1222
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAEREL-AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvDEGYEAAI 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1223 EATLQvKQLLSTEAETLRTQLDCASkALRKAE--------LDMRQLQTSNSSLTKLLEEIKTCRAITD---------SEC 1285
Cdd:TIGR02168 540 EAALG-GRLQAVVVENLNAAKKAIA-FLKQNElgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKdlvkfdpklRKA 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1286 IQLLHEKESLAASERTLLAEKEELLSENRIITEK---------LSKQSEEVARLEMGLNEKITYLTSEKEVACQKVAKLK 1356
Cdd:TIGR02168 618 LSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgdlvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1357 KQQDSLLKEKSALELQNGDLLADREssiktigDLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSK 1436
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELE-------ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1437 CDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKtccceknmllrdglNLQEECQKLNEEIREIQQTL-ILEKEARAK 1515
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALD--------------ELRAELTLLNEEAANLRERLeSLERRIAAT 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1516 ESetslyennklhgRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFA 1595
Cdd:TIGR02168 837 ER------------RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568937390 1596 ALSKSKLELQELHSCLTKILDDLRLNHEVALTERAEVLQDnknlLAEKREMMLrnEEALKEKEKLEESYFILQKEISQL 1674
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER----LSEEYSLTL--EEAEALENKIEDDEEEARRRLKRL 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
467-1200 |
1.65e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.18 E-value: 1.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 467 ELEKDL------ALRAQEVAELRRRLEsskppgDVDMSLSLLqEISALQEKLEAIhtdhQGEMTSLKEhfgaREEAFQKE 540
Cdd:TIGR02168 197 ELERQLkslerqAEKAERYKELKAELR------ELELALLVL-RLEELREELEEL----QEELKEAEE----ELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 541 IKALHTATEKLSKENESLRSKLDHANKENSDVIALwKSKLETAIASHQQAMEELKVSFSKGigtdSAEFAELKTQIERLR 620
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEEL----EAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 621 LDY---QHEIESLQSKQDSERSAHAKEMETMQAkLMKIIKEKEDSLEAVKARLDSAEDQ------HLVEMEDTLNKLQEA 691
Cdd:TIGR02168 337 EELaelEEKLEELKEELESLEAELEELEAELEE-LESRLEELEEQLETLRSKVAQLELQiaslnnEIERLEARLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 692 EIKANSITKELQEK--ELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLS 769
Cdd:TIGR02168 416 RERLQQEIEELLKKleEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 770 SELEKLRENLTDMEAKFKEKDDRED------QLVKAKEK----LENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQ 839
Cdd:TIGR02168 496 RLQENLEGFSEGVKALLKNQSGLSGilgvlsELISVDEGyeaaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTF 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 840 LKLTKANENAsfLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLE-LEKKMETSYNQCQDLKAKY------------ 906
Cdd:TIGR02168 576 LPLDSIKGTE--IQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlGGVLVVDDLDNALELAKKLrpgyrivtldgd 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 907 -------------EKASSETKTKHE-EILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAK--------SLTY 964
Cdd:TIGR02168 654 lvrpggvitggsaKTNSSILERRREiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELeelsrqisALRK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 965 LLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEEKQ 1044
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1045 VAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELrfckdklmamsekaRAEKEHLE 1124
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL--------------ESELEALL 879
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568937390 1125 GQVKKLTAEnlvlvkdkddvIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQT 1200
Cdd:TIGR02168 880 NERASLEEA-----------LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
610-1169 |
4.42e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 4.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 610 AELKTQIERLR------LDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQH------ 677
Cdd:COG1196 196 GELERQLEPLErqaekaERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELeelrle 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 678 LVEMEDTLNKLQEAEikaNSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNK 757
Cdd:COG1196 276 LEELELELEEAQAEE---YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 758 LHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEE 837
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 838 LQLKLTKANENASFLQKSIGEVTLKAEQ--SQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKT 915
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEAllELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 916 KHEEILQNLQ----KMLADTEDKLKAAQEA------NRDLMQDMEELKTQADKAKSLT------YLLTSAKKEIEVMSEE 979
Cdd:COG1196 513 ALLLAGLRGLagavAVLIGVEAAYEAALEAalaaalQNIVVEDDEVAAAAIEYLKAAKagratfLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 980 LRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEEKQVAEKRYQQEHRDRES 1059
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1060 LVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRfckDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVK 1139
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER---LEEELEEEALEEQLEAEREELLEELLEEEELLE 749
|
570 580 590
....*....|....*....|....*....|
gi 568937390 1140 DKDDVIQKLQSAYEELVKDQKALVQEIEDL 1169
Cdd:COG1196 750 EEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1166-1797 |
1.91e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 1.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1166 IEDLTTEKksaaEKQMSldntclTLKAERENLLQtNRDLQFEKDTLRQgqEKLSASLEATLQVKQLLSTEAETLRTQLDC 1245
Cdd:COG1196 191 LEDILGEL----ERQLE------PLERQAEKAER-YRELKEELKELEA--ELLLLKLRELEAELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1246 ASKALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSE 1325
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1326 EVARLEmglnekityltSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVM 1405
Cdd:COG1196 338 ELEELE-----------EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1406 QEKMKLLGNIDALKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTccceknmllrdg 1485
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL------------ 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1486 lnLQEECQKLNEEIREIQQTLILEKEARAKESETSlyennKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQK 1565
Cdd:COG1196 475 --LEAALAELLEELAEAAARLLLLLEAEADYEGFL-----EGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAA 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1566 VEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHEVALTERAEVLQDNKNLLAEKRE 1645
Cdd:COG1196 548 LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1646 MMLRNEEALKEKEKLEESYFILQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAM 1725
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568937390 1726 QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELnkskELLSVENQKMEEFKKEIETLKQA 1797
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA----LEELPEPPDLEELERELERLERE 775
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1414-1999 |
3.06e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 75.49 E-value: 3.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1414 NIDALKKELQERKKENQELTSSKCDLslllkeaQDAKKNLEKEHTSMIQAKDNLNAELKTCCCEKNMLLRdglnLQEECQ 1493
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENI-------EELIKEKEKELEEVLREINEISSELPELREELEKLEK----EVKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1494 KLNEEIREIQ-QTLILEKEARAKESETSLYEN--NKLHGRVVLLEEEIQRLRVCsEQLQTENFTLTQEKTNSEQKVEEII 1570
Cdd:PRK03918 235 ELKEEIEELEkELESLEGSKRKLEEKIRELEEriEELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1571 KEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHEV-ALTERAEVLQDN-KNLLAEKREMML 1648
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAkAKKEELERLKKRlTGLTPEKLEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1649 rnEEALKEKEKLEESYFILQKEISQLAQTNSHISANLLEsqsenrtLRKDKSKLTLKIRELETLH--SFTAAQTAEdamq 1726
Cdd:PRK03918 394 --EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE-------LKKAKGKCPVCGRELTEEHrkELLEEYTAE---- 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1727 iMEQMTKEKTETLASLEDTKQTNARLQNELDTLKE--NNLKTVEELNKSKELLSVEN-QKMEEFKKEIETLKQAAAQKSQ 1803
Cdd:PRK03918 461 -LKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1804 QLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMK-KSLPSNTLRESEFR---------KDADEEKASLQK 1873
Cdd:PRK03918 540 EIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEpfyneylelKDAEKELEREEK 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1874 SISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSV--VQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQ 1951
Cdd:PRK03918 620 ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEeeYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 568937390 1952 AEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGE 1999
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-1077 |
5.66e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 5.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 352 LQEALKEKQQHIEQLLAERDLERAEVAKATshvgEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELE----AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 432 EEKRKVEDLQFRVEEESITKGDLEVATVSEksRIMELEKDLALRAQEVAELRRRLESSKppgdvdmslSLLQEISALQEK 511
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELR---------EELEEAEQALDA 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 512 LEAIHTDHQGEMTSLKEHFGaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKensdvialWKSKLETAIASHQQAM 591
Cdd:TIGR02168 480 AERELAQLQARLDSLERLQE-NLEGFSEGVKALLKNQSGLSGILGVLSELISVDEG--------YEAAIEAALGGRLQAV 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 592 E-------ELKVSFSKGIGTDSAEFAELK----TQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKI-IKEK 659
Cdd:TIGR02168 551 VvenlnaaKKAIAFLKQNELGRVTFLPLDsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlVVDD 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 660 EDSLEAVKARLDSAE-----DQHLV----------------------EMEDTLNKLQEAEIKANSITKELQEKELVLTGL 712
Cdd:TIGR02168 631 LDNALELAKKLRPGYrivtlDGDLVrpggvitggsaktnssilerrrEIEELEEKIEELEEKIAELEKALAELRKELEEL 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 713 QDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKfkekddr 792
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE------- 783
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 793 edqlvkaKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAAR 872
Cdd:TIGR02168 784 -------IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 873 kheeekkeleeklleLEKKMETSYNQCQDLKAKYEKASSEtKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEEL 952
Cdd:TIGR02168 857 ---------------LAAEIEELEELIEELESELEALLNE-RASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 953 KTQADKAKsltylltSAKKEIEVMSEELRG-LKSEKQLYAQEANALKLEKGSLLSKLievETKITLLQEDQQKLWSVNET 1031
Cdd:TIGR02168 921 REKLAQLE-------LRLEGLEVRIDNLQErLSEEYSLTLEEAEALENKIEDDEEEA---RRRLKRLENKIKELGPVNLA 990
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 568937390 1032 lhlekerVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEE 1077
Cdd:TIGR02168 991 -------AIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE 1029
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
613-1372 |
6.74e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.38 E-value: 6.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 613 KTQIERLRLDYQHEIESLQSKQDSERSAHAKE-------METMQAKLMKIIKEKeDSLEAVKARLDSAEDQHLVEMEDTL 685
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQkfylrqsVIDLQTKLQEMQMER-DAMADIRRRESQSQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 686 NKLQEAeikansitKELQEKElvltgLQDSLNQVNQVKETLEKELQTLKE--KFASTSEEAVSAQTRMQDTVNKLHqkee 763
Cdd:pfam15921 152 HELEAA--------KCLKEDM-----LEDSNTQIEQLRKMMLSHEGVLQEirSILVDFEEASGKKIYEHDSMSTMH---- 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 764 qFNVLSSELEK-LRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNdelrlkERSVEELQLKL 842
Cdd:pfam15921 215 -FRSLGSAISKiLRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEH------EVEITGLTEKA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 843 TKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASS---ETKTKHEE 919
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSeltEARTERDQ 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 920 ILQ-------NLQKMLAD---TEDKLKAAQEANRDLM-QDMEELKTqadkAKSLTYLLTSAKKEIEVMSEELRGLKS--- 985
Cdd:pfam15921 368 FSQesgnlddQLQKLLADlhkREKELSLEKEQNKRLWdRDTGNSIT----IDHLRRELDDRNMEVQRLEALLKAMKSecq 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 986 ---EKQLYAQEANALKLEKGSLLSKliEVETKITLLQEDQQKLWSVNETLHLEKERVSEekqvAEKRYQQEHRDRESLVA 1062
Cdd:pfam15921 444 gqmERQMAAIQGKNESLEKVSSLTA--QLESTKEMLRKVVEELTAKKMTLESSERTVSD----LTASLQEKERAIEATNA 517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1063 EREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFcKDKLMAMSEKARAEKEHLEGQ----VKKLTAENLVLV 1138
Cdd:pfam15921 518 EITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAE-KDKVIEILRQQIENMTQLVGQhgrtAGAMQVEKAQLE 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1139 KDKDDVIQKLQSAyeELVKDQK-ALVQEIE----DLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQ 1213
Cdd:pfam15921 597 KEINDRRLELQEF--KILKDKKdAKIRELEarvsDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSE 674
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1214 GQEKLSASLEATlqvKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTK----LLEEIKTCRAITDS--ECIQ 1287
Cdd:pfam15921 675 DYEVLKRNFRNK---SEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKvamgMQKQITAKRGQIDAlqSKIQ 751
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1288 LLHEKESLAASERTLLAEKEELLSE--NRIITE--KLSKQSEEVARLEMGLNEKITYL------TSEKEVACQKVAKLKK 1357
Cdd:pfam15921 752 FLEEAMTNANKEKHFLKEEKNKLSQelSTVATEknKMAGELEVLRSQERRLKEKVANMevaldkASLQFAECQDIIQRQE 831
|
810
....*....|....*
gi 568937390 1358 QQDSLLKEKSALELQ 1372
Cdd:pfam15921 832 QESVRLKLQHTLDVK 846
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
971-1795 |
1.08e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 1.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 971 KEIEVMSEELRGLKSEK--QLYAQEANALKLEK-GSLLSKLIEVETKITLlqedqqklwsvNETLHLEKERVSEEKQVAE 1047
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKrqQLERLRREREKAERyQALLKEKREYEGYELL-----------KEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1048 KRYQQEHR-----DRESLVAEREKLLKEINA-----AQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAMSEKAR 1117
Cdd:TIGR02169 249 LEEELEKLteeisELEKRLEEIEQLLEELNKkikdlGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1118 AEKEHLEGQVKKLTAENLVLVKDKDdviqKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENL 1197
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRD----KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1198 LQTNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIKTC 1277
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1278 RAITDSECIQLLHEKESLAASERTLLAEKEELLSENR----IITEKLSKQSEEVARLEMGLNEKITYLTSEKE-VACQKV 1352
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvhgTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDaVAKEAI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1353 AKLKKQQDS----LLKEKSALELQNGDLLAdRESSIKTIGDLRRKYDQEATNRRIVMQEKMkLLGNIDALKKELQERK-- 1426
Cdd:TIGR02169 565 ELLKRRKAGratfLPLNKMRDERRDLSILS-EDGVIGFAVDLVEFDPKYEPAFKYVFGDTL-VVEDIEAARRLMGKYRmv 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1427 ---KENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTccceknmllrdglnlqeecqkLNEEIREIQ 1503
Cdd:TIGR02169 643 tleGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSS---------------------LQSELRRIE 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1504 QtLILEKEARAKESETSLYENNKlhgRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQL 1583
Cdd:TIGR02169 702 N-RLDELSQELSDASRKIGEIEK---EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1584 AANIETLK-----SDFAALSKSKLELQELHSCLTKILDDL------RLNHEVALTERAEVLQDNKNLLAEKREMMLRNEE 1652
Cdd:TIGR02169 778 EEALNDLEarlshSRIPEIQAELSKLEEEVSRIEARLREIeqklnrLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1653 ALK-EKEKLEESYFILQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAMQIME-- 1729
Cdd:TIGR02169 858 NLNgKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEie 937
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568937390 1730 ---QMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEE----------LNKSKELLSVENQKMEEFKKEIETLK 1795
Cdd:TIGR02169 938 dpkGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEyeevlkrldeLKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1209-1982 |
1.13e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1209 DTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLdcaSKALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQL 1288
Cdd:TIGR02169 194 DEKRQQLERLRREREKAERYQALLKEKREYEGYEL---LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEI 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1289 LHEKESLAASERTLLAEkeellsENRIITEKLSKQSEEVARLEMGLNEKitylTSEKEVACQKVAKLKKQQDSLLKEKSA 1368
Cdd:TIGR02169 271 EQLLEELNKKIKDLGEE------EQLRVKEKIGELEAEIASLERSIAEK----ERELEDAEERLAKLEAEIDKLLAEIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1369 LELQNGDLLADRESSIKTIGDLRRKYD-------QEATNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSKCDLSL 1441
Cdd:TIGR02169 341 LEREIEEERKRRDKLTEEYAELKEELEdlraeleEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1442 LLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCCCEKNMLLRDG-------LNLQEECQKLNEEIREIQQTLIlEKEARA 1514
Cdd:TIGR02169 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLskyeqelYDLKEEYDRVEKELSKLQRELA-EAEAQA 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1515 KESETSLYENNKLhgrVVLLEEEIQRLRVCSEQL-QTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSD 1593
Cdd:TIGR02169 500 RASEERVRGGRAV---EEVLKASIQGVHGTVAQLgSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRAT 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1594 FAALSKskleLQELHSCLTKILDDLRLNHEVALTERAE--------VLQDNK--NLLAEKREMMLRNEEALKEKEKLEES 1663
Cdd:TIGR02169 577 FLPLNK----MRDERRDLSILSEDGVIGFAVDLVEFDPkyepafkyVFGDTLvvEDIEAARRLMGKYRMVTLEGELFEKS 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1664 YFIlqkeisqlaqTNSHISANLLESQSenrtlRKDKSKLTLKIRELETLHsftaaQTAEDAMQIMEQMTKEKTETLASLE 1743
Cdd:TIGR02169 653 GAM----------TGGSRAPRGGILFS-----RSEPAELQRLRERLEGLK-----RELSSLQSELRRIENRLDELSQELS 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1744 DTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTR 1823
Cdd:TIGR02169 713 DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1824 -DEVTSH-QKLEEERSVLNNQLLEMKKSLPSNTLRES----------EFRKDADEEKASLQKSISLTSALLTEKDAELEK 1891
Cdd:TIGR02169 793 iPEIQAElSKLEEEVSRIEARLREIEQKLNRLTLEKEylekeiqelqEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1892 LRNEVTVLRGENATAKS----LHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDF 1967
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKerdeLEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS 952
|
810
....*....|....*
gi 568937390 1968 LNSVIVDLQRKNQDL 1982
Cdd:TIGR02169 953 LEDVQAELQRVEEEI 967
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
351-1078 |
1.34e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 1.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLE---LEAKMDQLRTMVEAADREKVELL 427
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEisrLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 428 NQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdmslsllQEISA 507
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR------------SKVAQ 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 508 LQEKLEAIhtdhQGEMTSLKEHfgareeafqkeIKALHTATEKLSKENESLRSKLDHANKEnsdvialwksKLETAIASH 587
Cdd:TIGR02168 391 LELQIASL----NNEIERLEAR-----------LERLEDRRERLQQEIEELLKKLEEAELK----------ELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 588 QQAMEELKVSFSKGIgTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERS----------------AHAKEMETMQAK 651
Cdd:TIGR02168 446 EEELEELQEELERLE-EALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfsegvkallKNQSGLSGILGV 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 652 LMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELqekeLVLTGLQDSLNQVN--QVKETLEKE 729
Cdd:TIGR02168 525 LSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTF----LPLDSIKGTEIQGNdrEILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 730 LQTLKE--KFASTSEEAVS---AQTRMQDTV----NKLHQKEEQFNVLS---------------------------SELE 773
Cdd:TIGR02168 601 LGVAKDlvKFDPKLRKALSyllGGVLVVDDLdnalELAKKLRPGYRIVTldgdlvrpggvitggsaktnssilerrREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 774 KLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ 853
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 854 KSIGEVTLKAEQSQQQAARkheeekkeLEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEiLQNLQKMLADTED 933
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAE--------AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE-AANLRERLESLER 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 934 KLKAAQEANRDLMQdmeELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVET 1013
Cdd:TIGR02168 832 RIAATERRLEDLEE---QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568937390 1014 KITLLQEDQQKLWSVNETLHLE-----------KERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEEL 1078
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRleglevridnlQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1237-1966 |
1.83e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 1.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1237 ETLRTQLDCASKALR-KAELDMRQLQTSNSSLTKLLEEIKTCRAITDseciqllhEKESLAASERTLLAEKEELLSENRI 1315
Cdd:TIGR02168 203 KSLERQAEKAERYKElKAELRELELALLVLRLEELREELEELQEELK--------EAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1316 ITEKLSKQSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLRRKYD 1395
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1396 ---QEATNRRIVMQEkmkLLGNIDALKKELQERKKE----NQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNL- 1467
Cdd:TIGR02168 355 sleAELEELEAELEE---LESRLEELEEQLETLRSKvaqlELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLe 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1468 NAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQ 1547
Cdd:TIGR02168 432 EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1548 LQTEN-----FTLTQEKTNSEQKVEEIIkEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNH 1622
Cdd:TIGR02168 512 LKNQSglsgiLGVLSELISVDEGYEAAI-EAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGND 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1623 EVALTERAEVLQDNKNLLAEKREMM---------------LRNEEALKEKEKLEESYFILQKEI----SQLAQTNSHISA 1683
Cdd:TIGR02168 591 REILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvddLDNALELAKKLRPGYRIVTLDGDLvrpgGVITGGSAKTNS 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1684 NLLESQSENRTLRKDKSKLTLKIRELET-----LHSFTAAQTA-EDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELD 1757
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKalaelRKELEELEEElEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1758 TLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshQKLEEERS 1837
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA---ANLRERLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1838 VLNNQLLEMKKSLPsntlRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGEnatakslhsvVQTLE 1917
Cdd:TIGR02168 828 SLERRIAATERRLE----DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA----------LALLR 893
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 568937390 1918 SDKVKLELKVKNLELQLKENKRQLSSSsgnTDAQAEEDERAQESQQMID 1966
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEEL---REKLAQLELRLEGLEVRID 939
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
211-271 |
2.07e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 72.41 E-value: 2.07e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568937390 211 LKVGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 271
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1146-1710 |
3.46e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 3.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1146 QKLQSAYEELvkDQKALVQEIEDLTTEKKSAAEKQmsldntcLTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEAT 1225
Cdd:COG1196 216 RELKEELKEL--EAELLLLKLRELEAELEELEAEL-------EELEAELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1226 LQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIKTcraitdseciQLLHEKESLAASERTLLAE 1305
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE----------ELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1306 KEELLSENRIITEKLSKQSEEVARLEMGLNEKITYLTSEKEVAcQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIK 1385
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA-AQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1386 TIGDLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKD 1465
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1466 NLNAELKTCCC----------EKNMLLRDGLNLQEECQKLNEEIREIQQTLILEKEARA----------KESETSLYENN 1525
Cdd:COG1196 516 LAGLRGLAGAVavligveaayEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAtflpldkiraRAALAAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1526 KLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAAnIETLKSDFAALSKSKLELQ 1605
Cdd:COG1196 596 AIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG-GSAGGSLTGGSRRELLAAL 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1606 ELHSCLTKILDDLRLNHEVALTERAEVLQDNKNLLAEKREMMLR-NEEALKEKEKLEESYFILQKEISQLAQTNSHISAN 1684
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEeELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
570 580
....*....|....*....|....*.
gi 568937390 1685 LLESQSENRTLRKDKSKLTLKIRELE 1710
Cdd:COG1196 755 ELPEPPDLEELERELERLEREIEALG 780
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
344-1084 |
4.25e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.02 E-value: 4.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 344 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQeLALARDGHDQH--VLELEAKMDQLRTMVEAADR 421
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-LRVKEKIGELEaeIASLERSIAEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 422 EKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEK-------SRIMELEKDLALRAQEVAELRRRLESSKPPGD 494
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKeeledlrAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 495 vdmslSLLQEISALQEKLEAIHT---DHQGEMTSLKE---HFGAREEAFQKEIKA----LHTATEKLSKENESL---RSK 561
Cdd:TIGR02169 403 -----ELKRELDRLQEELQRLSEelaDLNAAIAGIEAkinELEEEKEDKALEIKKqewkLEQLAADLSKYEQELydlKEE 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 562 LDHANKENSDVialwKSKLETAIASHQQAMEELKVSFS--KGIGTDSAEFAELKTQIERLRLDYQHEIESLQSK------ 633
Cdd:TIGR02169 478 YDRVEKELSKL----QRELAEAEAQARASEERVRGGRAveEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNrlnnvv 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 634 -QDSERSAHA----KEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQ--HLVEME------------DTL--NKLQEA- 691
Cdd:TIGR02169 554 vEDDAVAKEAiellKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFavDLVEFDpkyepafkyvfgDTLvvEDIEAAr 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 692 ----EIKANSITKELQEKELVLTG--------------LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQD 753
Cdd:TIGR02169 634 rlmgKYRMVTLEGELFEKSGAMTGgsraprggilfsrsEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 754 TVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDdredqlvkakEKLENDIAEimkmsgdnssqLTKMNDELRLKER 833
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE----------QEIENVKSE-----------LKELEARIEELEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 834 SVEELQLKLT--KANENASFLQKSIGEVT-LKAEQSQQQAARKH-EEEKKELEEKLLELEKKMETSYNQCQDLKAKyeka 909
Cdd:TIGR02169 773 DLHKLEEALNdlEARLSHSRIPEIQAELSkLEEEVSRIEARLREiEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ---- 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 910 ssetKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKsltylltsakKEIEVMSEELRGLKSEKQL 989
Cdd:TIGR02169 849 ----IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE----------AQLRELERKIEELEAQIEK 914
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 990 YAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVnETLHLEKERVSEEKQV--------------AEKRYQQEHR 1055
Cdd:TIGR02169 915 KRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-EDVQAELQRVEEEIRAlepvnmlaiqeyeeVLKRLDELKE 993
|
810 820
....*....|....*....|....*....
gi 568937390 1056 DRESLVAEREKLLKEINAAQEELLKMHME 1084
Cdd:TIGR02169 994 KRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
803-1712 |
9.80e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.87 E-value: 9.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 803 LENDIAEIMKMSG--------------DNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSigevTLKAEQSQQ 868
Cdd:TIGR02169 140 LQGDVTDFISMSPverrkiideiagvaEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE----REKAERYQA 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 869 QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKakyekassETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQD 948
Cdd:TIGR02169 216 LLKEKREYEGYELLKEKEALERQKEAIERQLASLE--------EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 949 mEELKTQADKAkSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSV 1028
Cdd:TIGR02169 288 -EQLRVKEKIG-ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1029 NETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASkvsmqvlIEELRFCKDK 1108
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAA-------IAGIEAKINE 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1109 LMAMSEKARAEKEHLEGQVKKLTAEnlvlVKDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCL 1188
Cdd:TIGR02169 439 LEEEKEDKALEIKKQEWKLEQLAAD----LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1189 TLKAERENLLQTNRDL-QFEKDTLRQGQEKLSASLEATLQVKQLLSTEAetlrTQLDCASKALRKAELDMRQLQTSNSSL 1267
Cdd:TIGR02169 515 VLKASIQGVHGTVAQLgSVGERYATAIEVAAGNRLNNVVVEDDAVAKEA----IELLKRRKAGRATFLPLNKMRDERRDL 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1268 TKLLEEIKTCRAITDSECIQlLHEKESLAASERTLLAEKEE----LLSENRIIT---EKLSKQSEEV--ARLEMGLNEKI 1338
Cdd:TIGR02169 591 SILSEDGVIGFAVDLVEFDP-KYEPAFKYVFGDTLVVEDIEaarrLMGKYRMVTlegELFEKSGAMTggSRAPRGGILFS 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1339 TYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLLGNIDAL 1418
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1419 KKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKehtsmiqakdnlnaelktccceknMLLRDGL-NLQEECQKLNE 1497
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA------------------------RLSHSRIpEIQAELSKLEE 805
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1498 EIREIqqtlilekEARAKESETSLyenNKLHGRVVLLEEEIQrlrvcseQLQTENFTLTQEKTNSEQKVEEIIKEKELLS 1577
Cdd:TIGR02169 806 EVSRI--------EARLREIEQKL---NRLTLEKEYLEKEIQ-------ELQEQRIDLKEQIKSIEKEIENLNGKKEELE 867
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1578 AETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHEVA------LTERAEVLQDNKNLLAEKREMMLRNE 1651
Cdd:TIGR02169 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKrkrlseLKAKLEALEEELSEIEDPKGEDEEIP 947
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 1652 EALKEKEKLEESYFILQKEISQLAQTN-------SHISANLLESQSENRTLRKDKSKLTLKIRELETL 1712
Cdd:TIGR02169 948 EEELSLEDVQAELQRVEEEIRALEPVNmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-1185 |
1.10e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 404 ELEAKMDQLRTMVEAADREKvELLNQLEEEKRKVEDLQFRVEEESITKgdLEVATVSEKSRIMELEKDLALRAQEVAELR 483
Cdd:TIGR02168 197 ELERQLKSLERQAEKAERYK-ELKAELRELELALLVLRLEELREELEE--LQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 484 RRLESskppgdvdmslsLLQEISALQEKLEAIHTDhQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLD 563
Cdd:TIGR02168 274 LEVSE------------LEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 564 HANKENSDVIALWKSKLE--TAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQH---EIESLQSKQDSER 638
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAelEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERleaRLERLEDRRERLQ 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 639 SAHAKEMETMQAKLMKIIKEKEDSLEAvkarldsaedqhlvEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQ 718
Cdd:TIGR02168 421 QEIEELLKKLEEAELKELQAELEELEE--------------ELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 719 VNQVKETLEKeLQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEK-LRENLTDMEAKFKEKDDREDQLV 797
Cdd:TIGR02168 487 LQARLDSLER-LQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAaLGGRLQAVVVENLNAAKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 798 KAKEK-----LENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL------------QLKLTKANENASFLQKSIGE-- 858
Cdd:TIGR02168 566 KQNELgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDpklrkalsyllgGVLVVDDLDNALELAKKLRPgy 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 859 --VTLKAEQ-----SQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKAssetKTKHEEILQNLQKMLADT 931
Cdd:TIGR02168 646 riVTLDGDLvrpggVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL----RKELEELEEELEQLRKEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 932 EDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGL-------KSEKQLYAQEANALKLEKGSL 1004
Cdd:TIGR02168 722 EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAeeelaeaEAEIEELEAQIEQLKEELKAL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1005 LSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELlkmhme 1084
Cdd:TIGR02168 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL------ 875
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1085 nDSLEASKVSMQVLIEELRFCKDKLMA----MSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQK 1160
Cdd:TIGR02168 876 -EALLNERASLEEALALLRSELEELSEelreLESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954
|
810 820
....*....|....*....|....*
gi 568937390 1161 ALVQEIEDLTTEKKSAAEKQMSLDN 1185
Cdd:TIGR02168 955 EAEALENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
761-1657 |
2.86e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 2.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 761 KEEQFNVLSSELEklrenltdmEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQL 840
Cdd:TIGR02169 209 KAERYQALLKEKR---------EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 841 KLTKANENASF-LQKSIGEVTLKAEQSQQQAARKheeekkeleekllelEKKMETSYNQCQDLKAKYEKASSEtKTKHEE 919
Cdd:TIGR02169 280 KIKDLGEEEQLrVKEKIGELEAEIASLERSIAEK---------------ERELEDAEERLAKLEAEIDKLLAE-IEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 920 ILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLtylLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKL 999
Cdd:TIGR02169 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE---LKDYREKLEKLKREINELKRELDRLQEELQRLSE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1000 EKGSLLSKLIEVETKITLLQEdqqklwsvnetlhlEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELL 1079
Cdd:TIGR02169 421 ELADLNAAIAGIEAKINELEE--------------EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1080 KMHMENDSLEASKvsmQVLIEELRFCKdklmAMSEKARAEKEHLEGQVKKL----------------TAENLVLVKDKDD 1143
Cdd:TIGR02169 487 KLQRELAEAEAQA---RASEERVRGGR----AVEEVLKASIQGVHGTVAQLgsvgeryataievaagNRLNNVVVEDDAV 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1144 VIQKLqsayeELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAereNLLQTnrDLQFEK-------DTLrqgqe 1216
Cdd:TIGR02169 560 AKEAI-----ELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAV---DLVEF--DPKYEPafkyvfgDTL----- 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1217 kLSASLEAT---LQVKQLLSTEAETLRTQ--LDCASKALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQLLHE 1291
Cdd:TIGR02169 625 -VVEDIEAArrlMGKYRMVTLEGELFEKSgaMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENR 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1292 KESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEmglnEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALEL 1371
Cdd:TIGR02169 704 LDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE----EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1372 QNGDLLAD-RESSIKTIGDLRRKydQEATNRRIVmqekmkllGNIDALKKELQERKKENQELTSSKCDLSLLLKEAQDAK 1450
Cdd:TIGR02169 780 ALNDLEARlSHSRIPEIQAELSK--LEEEVSRIE--------ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1451 KNLEKEHTSMIQAKDNLNAELKtcccEKNMLLRDglnLQEECQKLNEEIREIQQTLileKEARAKESEtslyennklhgr 1530
Cdd:TIGR02169 850 KSIEKEIENLNGKKEELEEELE----ELEAALRD---LESRLGDLKKERDELEAQL---RELERKIEE------------ 907
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1531 vvlLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKE-KELLSAEtaQLAANIETLKSDFAALSKSKLELQELHS 1609
Cdd:TIGR02169 908 ---LEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpEEELSLE--DVQAELQRVEEEIRALEPVNMLAIQEYE 982
|
890 900 910 920
....*....|....*....|....*....|....*....|....*...
gi 568937390 1610 CLTKILDDLRLNHEVALTERAEVLQDNKNLLAEKREMMLRNEEALKEK 1657
Cdd:TIGR02169 983 EVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINEN 1030
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
356-925 |
3.37e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 68.99 E-value: 3.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 356 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELALARDG-------HDQHVLELEAKMDQLRTMVEAADREKV 424
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIIQEQarnqnsmYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 425 ELLNQLEEekrkvedlQFRVEEESITKGDLEVATVSEKSRIM--ELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLL 502
Cdd:pfam15921 342 DKIEELEK--------QLVLANSELTEARTERDQFSQESGNLddQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 503 ------------QEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKE---IKALHTATEKLSKENESLRSK---LDH 564
Cdd:pfam15921 414 idhlrrelddrnMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVsslTAQLESTKEMLRKVVEELTAKkmtLES 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 565 ANKENSDVIALWKSKLETAIASHQQAME-----ELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHE---IESLQSKQDS 636
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNAEITKlrsrvDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKdkvIEILRQQIEN 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 637 ------ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKArLDSAEDQHLVEMEDTLNKLQEAEIK-ANSITKEL------- 702
Cdd:pfam15921 574 mtqlvgQHGRTAGAMQVEKAQLEKEINDRRLELQEFKI-LKDKKDAKIRELEARVSDLELEKVKlVNAGSERLravkdik 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 703 QEKELVLTGLQDSLNQVNqvkeTLEKELQTLKEKFASTSEEavsaqtrMQDTVNKLHQkeeQFNVLSSELEKLRENLTDM 782
Cdd:pfam15921 653 QERDQLLNEVKTSRNELN----SLSEDYEVLKRNFRNKSEE-------METTTNKLKM---QLKSAQSELEQTRNTLKSM 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 783 EAKfkekddredqlvkakeklendIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ----KSIGE 858
Cdd:pfam15921 719 EGS---------------------DGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKeeknKLSQE 777
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568937390 859 VTLKAEQSQQQAA-----RKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQ 925
Cdd:pfam15921 778 LSTVATEKNKMAGelevlRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
350-812 |
5.54e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.17 E-value: 5.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 350 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEqELALARDGHDQHVLELEAKMDQLRTMVEaadrEKVELLNQ 429
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEKIRELEERIE----ELKKEIEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 430 LEEEKRKVEDLQfRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDvdmslSLLQEISALQ 509
Cdd:PRK03918 278 LEEKVKELKELK-EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-----ELKKKLKELE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 510 EKLEAIHTDHQ---------GEMTSLKEHFGARE-EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD----VIAL 575
Cdd:PRK03918 352 KRLEELEERHElyeeakakkEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKElkkaIEEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 576 WKSKLETAIASH---QQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQhEIESLQSKQDSERSAH--AKEMETMQA 650
Cdd:PRK03918 432 KKAKGKCPVCGReltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR-ELEKVLKKESELIKLKelAEQLKELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 651 KLMKI----IKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQ-----VNQ 721
Cdd:PRK03918 511 KLKKYnleeLEKKAEEYEKLKEKLIKLKGE-IKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEElgfesVEE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 722 VKETL----------------EKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQK------------EEQFNVLSSELE 773
Cdd:PRK03918 590 LEERLkelepfyneylelkdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELrkeleelekkysEEEYEELREEYL 669
|
490 500 510
....*....|....*....|....*....|....*....
gi 568937390 774 KLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 812
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
6.34e-11 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 67.79 E-value: 6.34e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568937390 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
643-1179 |
6.84e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 67.74 E-value: 6.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 643 KEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLvEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQV 722
Cdd:TIGR04523 134 KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE-ELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQK 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 723 KETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEK 802
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 803 LENDIAEIMKMSGDNSSQltKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEvtLKAE--------QSQQQAARKH 874
Cdd:TIGR04523 293 LKSEISDLNNQKEQDWNK--ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQ--LKKEltnsesenSEKQRELEEK 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 875 EEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEI--LQNLQKMLADTEDKLKAAQEANRDLMQDMEEL 952
Cdd:TIGR04523 369 QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIkkLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 953 KTQADKA-KSLTYLLTSAKKEIEVMSEELRGLKS-------EKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQK 1024
Cdd:TIGR04523 449 DSVKELIiKNLDNTRESLETQLKVLSRSINKIKQnleqkqkELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1025 LWSvnETLHLEKERVSEEKQVAEKRYqqehrdreslVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRF 1104
Cdd:TIGR04523 529 LES--EKKEKESKISDLEDELNKDDF----------ELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEK 596
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 1105 CKDKLMAMSEKARAEKEHLEGQVKKLTAENlvlvKDKDDVIQKLQSAYEELVKDQKaLVQEIEDLTTEKKSAAEK 1179
Cdd:TIGR04523 597 EKKDLIKEIEEKEKKISSLEKELEKAKKEN----EKLSSIIKNIKSKKNKLKQEVK-QIKETIKEIRNKWPEIIK 666
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-960 |
1.07e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 1.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 351 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 431 EEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLEsskppgdvdmslSLLQEISALQE 510
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE------------EAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 511 KLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKensdvialwKSKLETAIASHQQA 590
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER---------LERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 591 MEELKvsfsKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKiiKEKEDSLEAVKARL 670
Cdd:COG1196 430 LAELE----EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA--AARLLLLLEAEADY 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 671 DSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSaqtr 750
Cdd:COG1196 504 EGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL---- 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 751 mqdtvNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKmsgdnssqltKMNDELRL 830
Cdd:COG1196 580 -----DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAAL----------RRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 831 KERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKAS 910
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 568937390 911 SETKTKHEEILQNLQKMLADTEDkLKAAQEANRDLMQDMEELKTQADKAK 960
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEEL-LEEEALEELPEPPDLEELERELERLE 773
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
351-868 |
1.37e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.60 E-value: 1.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELalardghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR--------EELETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 431 EEEKRKVEDLQFRVEE--ESITKGDLEVATVSEksRIMELEKDLALRAQEVAELRRRLESSKPPGDvdmslSLLQEISAL 508
Cdd:PRK02224 282 RDLRERLEELEEERDDllAEAGLDDADAEAVEA--RREELEDRDEELRDRLEECRVAAQAHNEEAE-----SLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 509 QEKLEAIHT---DHQGEMTSLKEHFGARE---EAFQKEIKALH-------TATEKLSKENESLRSKLDHANKENSDVIAL 575
Cdd:PRK02224 355 EERAEELREeaaELESELEEAREAVEDRReeiEELEEEIEELRerfgdapVDLGNAEDFLEELREERDELREREAELEAT 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 576 WKSkLETAIASHQQAMEELKV----------SFSKGIGTDSAEFAELKTQIERLRLdyqhEIESLQSKQDSERSAH--AK 643
Cdd:PRK02224 435 LRT-ARERVEEAEALLEAGKCpecgqpvegsPHVETIEEDRERVEELEAELEDLEE----EVEEVEERLERAEDLVeaED 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 644 EMETMQAK---LMKIIKEKEDSLEAVKARLDS---AEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLN 717
Cdd:PRK02224 510 RIERLEERredLEELIAERRETIEEKRERAEElreRAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 718 QVNQVKETLEK------ELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFN-----VLSSELEKLRENLTDMEAKF 786
Cdd:PRK02224 590 SLERIRTLLAAiadaedEIERLREKREALAELNDERRERLAEKRERKRELEAEFDearieEAREDKERAEEYLEQVEEKL 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 787 KEKDDREDQLVKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERSVEELQLKLTKANENASFLQKSIGEvtLKAEQS 866
Cdd:PRK02224 670 DELREERDDLQAEIGAVENELEEL---------------EELRERREALENRVEALEALYDEAEELESMYGD--LRAELR 732
|
..
gi 568937390 867 QQ 868
Cdd:PRK02224 733 QR 734
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1467-1994 |
2.26e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 2.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1467 LNAELKTCccEKNMLLRDGLNLQEECQKLNEEIREIQQTLI-LEKEARAKESEtslyennklhgrVVLLEEEIQRLRVCS 1545
Cdd:COG1196 218 LKEELKEL--EAELLLLKLRELEAELEELEAELEELEAELEeLEAELAELEAE------------LEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1546 EQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHEVA 1625
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1626 LTERAEVLQDNKNLLAEKREmmLRNEEALKEKEKLEEsyfilQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLK 1705
Cdd:COG1196 364 EEALLEAEAELAEAEEELEE--LAEELLEALRAAAEL-----AAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1706 IRELEtlhsftaaQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnnlKTVEELNKSKELLSVENQKME 1785
Cdd:COG1196 437 EEEEE--------EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE---ELAEAAARLLLLLEAEADYEG 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1786 EFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKS-------LPSNTLRES 1858
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratfLPLDKIRAR 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1859 EFRKDADEEKASLQKSISLTSALltekDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENK 1938
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDL----READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS 661
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 568937390 1939 RQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAAL 1994
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-782 |
2.37e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 2.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 358 EKQQHIEQLlaerdleRAEVAKATSHVGEIEQELALARDGHDqhvlELEAKMDQLRTMVEAADREKVELLNQLEEEKRKV 437
Cdd:TIGR02168 674 ERRREIEEL-------EEKIEELEEKIAELEKALAELRKELE----ELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 438 EDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLEsskppgdvDMSLSLLQEISALQEkLEAIHT 517
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE--------QLKEELKALREALDE-LRAELT 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 518 DHQGEMTSLKEhfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDvialwkskLETAIASHQQAMEELkvs 597
Cdd:TIGR02168 814 LLNEEAANLRE----RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE--------LEELIEELESELEAL--- 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 598 fskgigtdSAEFAELKTQIERLRLDYqheiESLQSKQDSERSaHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQH 677
Cdd:TIGR02168 879 --------LNERASLEEALALLRSEL----EELSEELRELES-KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 678 LVEMEDTlnkLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKF---ASTSEEAVSAQTRMQDT 754
Cdd:TIGR02168 946 SEEYSLT---LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYdflTAQKEDLTEAKETLEEA 1022
|
410 420
....*....|....*....|....*...
gi 568937390 755 VNKLhqKEEQFNVLSSELEKLRENLTDM 782
Cdd:TIGR02168 1023 IEEI--DREARERFKDTFDQVNENFQRV 1048
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1037-1607 |
2.46e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 2.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1037 ERVSEEKQVAEK----RYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAM 1112
Cdd:COG1196 203 EPLERQAEKAERyrelKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1113 SEKARAEKEHLEGQVKKLTAENLVLVKDKDDV---IQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLT 1189
Cdd:COG1196 283 LEEAQAEEYELLAELARLEQDIARLEERRRELeerLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1190 LKAERENLLQTNRDLQFEKDTLRQGQ-EKLSASLEATLQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLT 1268
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELlEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1269 KLLEEIKtcraitdseciQLLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEMGLNEKITYLTSEKEVA 1348
Cdd:COG1196 443 ALEEAAE-----------EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1349 cqkvAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKE 1428
Cdd:COG1196 512 ----AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAA 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1429 NQELTSSKCDLSLLLKEAQDAKK---------NLEKEHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEI 1499
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREadaryyvlgDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1500 REIQQTLILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAE 1579
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
570 580
....*....|....*....|....*...
gi 568937390 1580 TAQLAANIETLKSDFAALSKsklELQEL 1607
Cdd:COG1196 748 LEEEALEELPEPPDLEELER---ELERL 772
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1265-1941 |
4.11e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 65.13 E-value: 4.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1265 SSLTKLLEEIKTCRAITDSEciqlLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEMGL---NEKITYL 1341
Cdd:pfam05483 81 SKLYKEAEKIKKWKVSIEAE----LKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLikeNNATRHL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1342 TSEKEVACQKVAKLKKQQDSLLKEKSALELqngDLLADRESSIKTIGDLRrkydQEATNRRIVMQEKMKL-LGNIDALKK 1420
Cdd:pfam05483 157 CNLLKETCARSAEKTKKYEYEREETRQVYM---DLNNNIEKMILAFEELR----VQAENARLEMHFKLKEdHEKIQHLEE 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1421 ELQER--KKENQ---------ELTSSKCDLSLLLKEAQDAKKNLEKEHT-------SMIQAKDNLNAELKTCCCEKNMLL 1482
Cdd:pfam05483 230 EYKKEinDKEKQvsllliqitEKENKMKDLTFLLEESRDKANQLEEKTKlqdenlkELIEKKDHLTKELEDIKMSLQRSM 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1483 RDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLLEE----EIQRLRVCSEQLQTENFTLtQE 1558
Cdd:pfam05483 310 STQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEEllrtEQQRLEKNEDQLKIITMEL-QK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1559 KTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILD-------DLRLNHEVALTERAE 1631
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQarekeihDLEIQLTAIKTSEEH 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1632 VLQDNKNLLAEKREMMLRNEEALKEKEKLeesyfilQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELET 1711
Cdd:pfam05483 469 YLKEVEDLKTELEKEKLKNIELTAHCDKL-------LLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEE 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1712 lhsfTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEI 1791
Cdd:pfam05483 542 ----KEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQEN 617
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1792 ETLKQAAAQKSQQLSALQEENVKLAEELGRTRdevtshQKLEEERSVLNNQlLEMKKSLPSNTLRESEFRKDADEEKASL 1871
Cdd:pfam05483 618 KALKKKGSAENKQLNAYEIKVNKLELELASAK------QKFEEIIDNYQKE-IEDKKISEEKLLEEVEKAKAIADEAVKL 690
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568937390 1872 QKSISL-TSALLTEKDAELEKLRNEVTVLRGENATAKSLH-SVVQTLESDKVKLELKVKNLELQLKENKRQL 1941
Cdd:pfam05483 691 QKEIDKrCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYkNKEQEQSSAKAALEIELSNIKAELLSLKKQL 762
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
643-1275 |
9.60e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 9.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 643 KEMETMQAKLMK---IIKEKEDSLE-----AVKAR----LDSAEDQHLVEMedTLNKLQEAEIKANSITKELQEKELVLT 710
Cdd:COG1196 179 RKLEATEENLERledILGELERQLEplerqAEKAEryreLKEELKELEAEL--LLLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 711 GLQDSLNQVNQVKETLEKELQTLkekfastSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKD 790
Cdd:COG1196 257 ELEAELAELEAELEELRLELEEL-------ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 791 DREDQLVKAKEKLENDIAEIMKmsgdnssqltkmndELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQA 870
Cdd:COG1196 330 EELEELEEELEELEEELEEAEE--------------ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 871 ARKheeekkeleekllelekkmetsynqcQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDME 950
Cdd:COG1196 396 AEL--------------------------AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 951 ELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVetKITLLQEDQQKLW-SVN 1029
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV--KAALLLAGLRGLAgAVA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1030 ETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKL 1109
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASD 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1110 MAMSE--KARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNtc 1187
Cdd:COG1196 608 LREADarYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA-- 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1188 LTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSL 1267
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
....*...
gi 568937390 1268 TKLLEEIK 1275
Cdd:COG1196 766 ERELERLE 773
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
588-1500 |
1.14e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 588 QQAMEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQHEIES---LQSKQDSERSAHAKEMETMqaklmkiikekEDSLE 664
Cdd:TIGR02169 173 EKALEELEE-VEENIERLDLIIDEKRQQLERLRREREKAERYqalLKEKREYEGYELLKEKEAL-----------ERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 665 AVKARLDSAEDqhlvEMEDtlnklqeaeikansITKELQEKELVLTGLQDSLNQVN-QVKETLEKELQTLKEKFASTSEE 743
Cdd:TIGR02169 241 AIERQLASLEE----ELEK--------------LTEEISELEKRLEEIEQLLEELNkKIKDLGEEEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 744 AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimkmsgdnssqltk 823
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK------------------- 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 824 mnDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeekkeleekllelekkmetsynqcqdlk 903
Cdd:TIGR02169 364 --EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL------------------------------ 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 904 akyekasSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLmqdMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGL 983
Cdd:TIGR02169 412 -------QEELQRLSEELADLNAAIAGIEAKINELEEEKEDK---ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 984 KSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLW-SVNETLHLEKERVSEEKQVAEKRYQQEHRDRESLVA 1062
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHgTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAK 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1063 EREKLLKEINAAQEELLKMH-MENDSLEASKVSMQVLIE---ELRFCKDK-------------LMAMSEKARAekehLEG 1125
Cdd:TIGR02169 562 EAIELLKRRKAGRATFLPLNkMRDERRDLSILSEDGVIGfavDLVEFDPKyepafkyvfgdtlVVEDIEAARR----LMG 637
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1126 QVKKLTAENLVLvkDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSaaekqmsldntcltLKAERENLLQTNRDLQ 1205
Cdd:TIGR02169 638 KYRMVTLEGELF--EKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEG--------------LKRELSSLQSELRRIE 701
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1206 FEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRtqldcaskalRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSEC 1285
Cdd:TIGR02169 702 NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK----------ERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1286 IQLLHEKESLAASERTLLAEKEellsenRIITEKLSKQSEEVARLEMGLNE---KITYLTSEKEVACQKVAKLKKQQDsl 1362
Cdd:TIGR02169 772 EDLHKLEEALNDLEARLSHSRI------PEIQAELSKLEEEVSRIEARLREieqKLNRLTLEKEYLEKEIQELQEQRI-- 843
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1363 lkeksALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSKCDLSLL 1442
Cdd:TIGR02169 844 -----DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 1443 LKEAQDAKKNLEKEHTSMIQAKDNLNAElktccCEKNMLLRDglnLQEECQKLNEEIR 1500
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIEDPKGEDEEI-----PEEELSLED---VQAELQRVEEEIR 968
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1272-1985 |
1.39e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1272 EEIKTCRAITDSECIQLLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEMGLNE-----KITYLTSEKE 1346
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKaeeakKADEAKKKAE 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1347 VACQKVAKLKKQQDSLlKEKSALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERK 1426
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEA-KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1427 KENQELTSSKCDLslllKEAQDAKKNLEKEHTSmiqakdnlnAELKTCCCEKNMllrdglnlQEECQKLNEEIREIQQTL 1506
Cdd:PTZ00121 1405 KKADELKKAAAAK----KKADEAKKKAEEKKKA---------DEAKKKAEEAKK--------ADEAKKKAEEAKKAEEAK 1463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1507 ILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLrvcSEQLQtenftltqEKTNSEQKVEEIIKEKELLSAETAQLAAn 1586
Cdd:PTZ00121 1464 KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK---ADEAK--------KAAEAKKKADEAKKAEEAKKADEAKKAE- 1531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1587 iETLKSDFAALSKSKLELQELhscltKILDDLRLNHEVALTERAEVLQDNKNLLAEKREMMLRNEEA-LKEKEKLEESYF 1665
Cdd:PTZ00121 1532 -EAKKADEAKKAEEKKKADEL-----KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEArIEEVMKLYEEEK 1605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1666 ILQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDA-MQIMEQMTKEKTETLASLED 1744
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAeEAKKAEEDKKKAEEAKKAEE 1685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1745 TKQTNArlqnELDTLKENNLKTVEELNKSKEllsVENQKMEEFKKEIETLKQaaaqKSQQLSALQEENVKLAEELGRTRD 1824
Cdd:PTZ00121 1686 DEKKAA----EALKKEAEEAKKAEELKKKEA---EEKKKAEELKKAEEENKI----KAEEAKKEAEEDKKKAEEAKKDEE 1754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1825 EVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASlqKSISLTSALLTEKDAELEKLRNEVTVLRGENA 1904
Cdd:PTZ00121 1755 EKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI--KDIFDNFANIIEGGKEGNLVINDSKEMEDSAI 1832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1905 TAKSLHSVVQTLESDKVKlelkvknlelQLKENKRQLSSSSGNTDAQA-------EEDERAQESQQMIDFLNSVIVDLQR 1977
Cdd:PTZ00121 1833 KEVADSKNMQLEEADAFE----------KHKFNKNNENGEDGNKEADFnkekdlkEDDEEEIEEADEIEKIDKDDIEREI 1902
|
....*...
gi 568937390 1978 KNQDLKMK 1985
Cdd:PTZ00121 1903 PNNNMAGK 1910
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
406-1308 |
1.46e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.60 E-value: 1.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 406 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEESITKGDLE------VATVSEKSRIMELEKDLAL----- 474
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESNELHEKQKfylrqsVIDLQTKLQEMQMERDAMAdirrr 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 475 RAQEVAELRRRLESSKPPGDVDMSLS--LLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEI----------- 541
Cdd:pfam15921 136 ESQSQEDLRNQLQNTVHELEAAKCLKedMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIyehdsmstmhf 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 542 KALHTATEKLSKENESLRSKLdhankenSDVIALWKSKLETAIASHQQAMEELkvsfskgigtdsaeFAELKTQIERLRL 621
Cdd:pfam15921 216 RSLGSAISKILRELDTEISYL-------KGRIFPVEDQLEALKSESQNKIELL--------------LQQHQDRIEQLIS 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 622 DYQHEIESLQSKQDSERSahakEMETMQAKlMKIIKEKEDSLEAVKARldsaedqHLVEMEDTLNKLQEAEIKANSITK- 700
Cdd:pfam15921 275 EHEVEITGLTEKASSARS----QANSIQSQ-LEIIQEQARNQNSMYMR-------QLSDLESTVSQLRSELREAKRMYEd 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 701 --ELQEKELVLTGLQDSlnqvnqvketlekELQTLKEKFastSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRE- 777
Cdd:pfam15921 343 kiEELEKQLVLANSELT-------------EARTERDQF---SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDr 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 778 ---NLTDMEAKFKEKDDREDQLvkakEKLEndiAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQK 854
Cdd:pfam15921 407 dtgNSITIDHLRRELDDRNMEV----QRLE---ALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRK 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 855 SIGEVTLKaeqsqqqaarkheeekkeleekllelEKKMETSYNQCQDLKAKYEKASSETKTKHEEIlqnlQKMLADTEDK 934
Cdd:pfam15921 480 VVEELTAK--------------------------KMTLESSERTVSDLTASLQEKERAIEATNAEI----TKLRSRVDLK 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 935 LKAAQEanrdLMQDMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIE---- 1010
Cdd:pfam15921 530 LQELQH----LKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDrrle 605
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1011 -VETKITLLQEDQQ--KLWSVNETLHLEKERV---SEEKQVAEKRYQQEhrdRESLVAEREKLLKEINAAQE--ELLKMH 1082
Cdd:pfam15921 606 lQEFKILKDKKDAKirELEARVSDLELEKVKLvnaGSERLRAVKDIKQE---RDQLLNEVKTSRNELNSLSEdyEVLKRN 682
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1083 MENDSLE----ASKVSMQV--LIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENlVLVKDKDDVIQKLQSAYEELV 1156
Cdd:pfam15921 683 FRNKSEEmettTNKLKMQLksAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKR-GQIDALQSKIQFLEEAMTNAN 761
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1157 KDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQ--TNRDLQFEKDTL----------RQGQEKLSASLEA 1224
Cdd:pfam15921 762 KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEkvANMEVALDKASLqfaecqdiiqRQEQESVRLKLQH 841
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1225 TLQVKQLLS---TEAETLRTQLdCASKALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERT 1301
Cdd:pfam15921 842 TLDVKELQGpgyTSNSSMKPRL-LQPASFTRTHSNVPSSQSTASFLSHHSRKTNALKEDPTRDLKQLLQELRSVINEEPT 920
|
....*..
gi 568937390 1302 LLAEKEE 1308
Cdd:pfam15921 921 VQLSKAE 927
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1145-1735 |
1.57e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 1.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1145 IQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEkqmsLDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEA 1224
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTEN----IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1225 TLQVKQLLsteaETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIKtcraitdsECIQLLHEKESLAASERTLLA 1304
Cdd:PRK03918 233 LEELKEEI----EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE--------EKVKELKELKEKAEEYIKLSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1305 EKEELLSENRIITEKLSKQSEEVArlemGLNEKITYLTSEKEvacqKVAKLKKQQDSLLKEKSALE-----LQNGDLLAD 1379
Cdd:PRK03918 301 FYEEYLDELREIEKRLSRLEEEIN----GIEERIKELEEKEE----RLEELKKKLKELEKRLEELEerhelYEEAKAKKE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1380 RESSIK------TIGDLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSK-----CDLSL------- 1441
Cdd:PRK03918 373 ELERLKkrltglTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvCGRELteehrke 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1442 LLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTccCEKNMLLRDGLNLQEECQKLNEEIREIQQTLILEK-EARAKESETS 1520
Cdd:PRK03918 453 LLEEYTAELKRIEKELKEIEEKERKLRKELRE--LEKVLKKESELIKLKELAEQLKELEEKLKKYNLEElEKKAEEYEKL 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1521 LYENNKLHGRVVLLEEEIQRLrvcsEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAET-AQLAANIETLKS---DFAA 1596
Cdd:PRK03918 531 KEKLIKLKGEIKSLKKELEKL----EELKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKELEPfynEYLE 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1597 LSKSKLELQELHscltKILDDLRLNHEVALTERAEVLQDNKNLLAEKREMMLR-----NEEALKEKEKLEESYFILQKEI 1671
Cdd:PRK03918 607 LKDAEKELEREE----KELKKLEEELDKAFEELAETEKRLEELRKELEELEKKyseeeYEELREEYLELSRELAGLRAEL 682
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 1672 SQLAQTNSHISANLLESQSENRTLRKDKSKLTL-------------KIRELETLHSFTA-AQTAEDAMQIMEQMTKEK 1735
Cdd:PRK03918 683 EELEKRREEIKKTLEKLKEELEEREKAKKELEKlekalerveelreKVKKYKALLKERAlSKVGEIASEIFEELTEGK 760
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1442-1803 |
2.08e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 2.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1442 LLKEAQDAKKNLEKEHTSMIQAKDnLNAELKTCccEKNMLLRDGLNLQEECQKLNEEIREiQQTLILEKEARAKESETSL 1521
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAERYKE-LKAELREL--ELALLVLRLEELREELEELQEELKE-AEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1522 YENNKLHGRvvlLEEEIqrlrvcsEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSdfaalskSK 1601
Cdd:TIGR02168 270 EELRLEVSE---LEEEI-------EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES-------KL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1602 LELQElhscltkILDDLRLNHEVALTERAEVLQDNKNLLAEKREMMLRNEEALKEKEKLEESYFILQKEISQLAQTNSHI 1681
Cdd:TIGR02168 333 DELAE-------ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1682 SANLLESQSENRTLRKDKSKLTLKIREletlhsftaAQTAEDAMQImEQMTKEKTETLASLEDTKQTNARLQNELDTLKE 1761
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEE---------AELKELQAEL-EELEEELEELQEELERLEEALEELREELEEAEQ 475
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568937390 1762 NNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQ 1803
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
714-1763 |
4.45e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 62.11 E-value: 4.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 714 DSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDRE 793
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 794 DQLVKAKEKLENDI-------------------------AEIMKMSGD---NSSQLTKMNDELRLKERSVEELQLKLTKA 845
Cdd:pfam01576 92 QQLQNEKKKMQQHIqdleeqldeeeaarqklqlekvtteAKIKKLEEDillLEDQNSKLSKERKLLEERISEFTSNLAEE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 846 NENASFLQK---------SIGEVTLKAEQSQQQAARKHEEEKKELEEKLLElekkmetsynQCQDLKAKYEKASSETKTK 916
Cdd:pfam01576 172 EEKAKSLSKlknkheamiSDLEERLKKEEKGRQELEKAKRKLEGESTDLQE----------QIAELQAQIAELRAQLAKK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 917 HEEiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTyllTSAKKEIEVMSEELRGLKSEKQ------LY 990
Cdd:pfam01576 242 EEE-LQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAAR---NKAEKQRRDLGEELEALKTELEdtldttAA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 991 AQEANALKLEKGSLLSKLIEVETKI--TLLQEDQQKLWSVNETLHLEKERVSEEKQVAEKryqqehrDRESLVAEREKLL 1068
Cdd:pfam01576 318 QQELRSKREQEVTELKKALEEETRSheAQLQEMRQKHTQALEELTEQLEQAKRNKANLEK-------AKQALESENAELQ 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1069 KEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKL 1148
Cdd:pfam01576 391 AELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQL 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1149 QSAYEELVKDQKALVQeiedLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEATLQV 1228
Cdd:pfam01576 471 QDTQELLQEETRQKLN----LSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEG 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1229 KQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTklleeiktcraitdsecIQLLHEKESLAASERTlLAEKEE 1308
Cdd:pfam01576 547 KKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLL-----------------VDLDHQRQLVSNLEKK-QKKFDQ 608
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1309 LLSENRIITeklSKQSEEVARLEMGLNEKITyltsekevacqKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIG 1388
Cdd:pfam01576 609 MLAEEKAIS---ARYAEERDRAEAEAREKET-----------RALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKD 674
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1389 DL----------RRKYDQEATNRRIVMQE-----------KMKLLGNIDALK----KELQERKKENQEltsskcDLSLLL 1443
Cdd:pfam01576 675 DVgknvhelersKRALEQQVEEMKTQLEEledelqatedaKLRLEVNMQALKaqfeRDLQARDEQGEE------KRRQLV 748
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1444 KEAQDAKKNLEKEHTSMIQA---KDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQTLILEKEAR------A 1514
Cdd:pfam01576 749 KQVRELEAELEDERKQRAQAvaaKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRdeilaqS 828
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1515 KESETSLyenNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDF 1594
Cdd:pfam01576 829 KESEKKL---KNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNT 905
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1595 AALSKSKLELQELHSCLTKILDDLRLNHEVALTERAEVLQDNKNLLAEKREMmlrnEEALKEKEKLEESYFilqkeISQL 1674
Cdd:pfam01576 906 ELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEM----EGTVKSKFKSSIAAL-----EAKI 976
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1675 AQTNSHISANLLESQSENRTLRKDKSKL--TLKIRELETLHSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARL 1752
Cdd:pfam01576 977 AQLEEQLEQESRERQAANKLVRRTEKKLkeVLLQVEDERRHADQYKDQAEKGNSRMKQLKRQLEEAEEEASRANAARRKL 1056
|
1130
....*....|.
gi 568937390 1753 QNELDTLKENN 1763
Cdd:pfam01576 1057 QRELDDATESN 1067
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
748-1597 |
5.86e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 5.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 748 QTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEA------KFKEKDDREDQL-----VKAKEKLENDIAEIMKMSGD 816
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELERQLKSLERqaekaeRYKELKAELRELelallVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 817 NSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEkkeleekllelekkmetsy 896
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL------------------- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 897 nqcQDLKAKYEKAssetktkhEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIEVM 976
Cdd:TIGR02168 312 ---ANLERQLEEL--------EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 977 SEELRglksekqlyaQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEEK---QVAEKRYQQE 1053
Cdd:TIGR02168 381 LETLR----------SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqaELEELEEELE 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1054 H--RDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFcKDKLMAMSEKARAEKEHLEGQVKKL- 1130
Cdd:TIGR02168 451 ElqEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG-FSEGVKALLKNQSGLSGILGVLSELi 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1131 -------TAENLVLVKDKDDViqklqsayeeLVKDQKALVQEIEDLtteKKSAAEKQMSL---DNTCLTLKAERENLLQT 1200
Cdd:TIGR02168 530 svdegyeAAIEAALGGRLQAV----------VVENLNAAKKAIAFL---KQNELGRVTFLpldSIKGTEIQGNDREILKN 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1201 NRDLQFEKDTLRQGQEKLSASLEATLQvkqlLSTEAETLRTQLDCASK---ALRKAELDMRQLQTS----------NSSL 1267
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLG----GVLVVDDLDNALELAKKlrpGYRIVTLDGDLVRPGgvitggsaktNSSI 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1268 TKLLEEIKTCRaitdseciQLLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEMGLNEKITYLTSEKEV 1347
Cdd:TIGR02168 673 LERRREIEELE--------EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1348 ACQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLRRKYDQeaTNRRIVMQEKMkllgnIDALKKELQERKK 1427
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ--LKEELKALREA-----LDELRAELTLLNE 817
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1428 ENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCCCEKNmllrdglNLQEECQKLNEEIREIQQTLI 1507
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE-------ELESELEALLNERASLEEALA 890
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1508 LEKEARAKESEtslyENNKLHGRVVLLEEEIQRLRVCSEQLQTE------NFTLTQEKTNSEQKV--EEIIKEKELLSAE 1579
Cdd:TIGR02168 891 LLRSELEELSE----ELRELESKRSELRRELEELREKLAQLELRleglevRIDNLQERLSEEYSLtlEEAEALENKIEDD 966
|
890
....*....|....*...
gi 568937390 1580 TAQLAANIETLKSDFAAL 1597
Cdd:TIGR02168 967 EEEARRRLKRLENKIKEL 984
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1319-1851 |
1.23e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.42 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1319 KLSKQSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQngdlLADRESSIKTIGDLRRKYDQEA 1398
Cdd:TIGR04523 128 KLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKE----KLNIQKNIDKIKNKLLKLELLL 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1399 TNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCCCEK 1478
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKI 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1479 NMLLRDGLNLQEECQKLN----EEIREIQQTLILEKEARAKESETSLYENNKlhgRVVLLEEEIQRLRVCSEQLQTENFT 1554
Cdd:TIGR04523 284 KELEKQLNQLKSEISDLNnqkeQDWNKELKSELKNQEKKLEEIQNQISQNNK---IISQLNEQISQLKKELTNSESENSE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1555 LTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHEVALTERAEVLQ 1634
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNS 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1635 DNKNLLAEKREMMLRNEEALKEKEKLEESYFILQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHS 1714
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1715 F--TAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNA------RLQNELDTLKENNLKTVEELNKSKELLSVENQKMEE 1786
Cdd:TIGR04523 521 SlkEKIEKLESEKKEKESKISDLEDELNKDDFELKKENlekeidEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKD 600
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 1787 FKKEIETLKQAAAQKSQQLSALQEENVKLAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKSLP 1851
Cdd:TIGR04523 601 LIKEIEEKEKKISSLEKELEKAKKENEKLSSII---KNIKSKKNKLKQEVKQIKETIKEIRNKWP 662
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
350-963 |
2.05e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.75 E-value: 2.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 350 TALQEALKEKQQHIEQLlaERDLERAevakatshvgeiEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQ 429
Cdd:pfam15921 331 SELREAKRMYEDKIEEL--EKQLVLA------------NSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLE 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 430 LEEEKR----------KVEDLQFRVEEESITKGDLEVATVSEKSRIM-ELEKDLAL------RAQEVAELRRRLESSKpp 492
Cdd:pfam15921 397 KEQNKRlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAiqgkneSLEKVSSLTAQLESTK-- 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 493 gdvDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAReEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDV 572
Cdd:pfam15921 475 ---EMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAI-EATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEC 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 573 IAL-----WKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQhEIESLQSKQDSERSAHAKEMET 647
Cdd:pfam15921 551 EALklqmaEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ-EFKILKDKKDAKIRELEARVSD 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 648 MQAKLMKIIKEKEDSLEAVKaRLDSAEDQHLVEMEDTLNKL----QEAEIKANSITKELQEKELVLTGLQdslNQVNQVK 723
Cdd:pfam15921 630 LELEKVKLVNAGSERLRAVK-DIKQERDQLLNEVKTSRNELnslsEDYEVLKRNFRNKSEEMETTTNKLK---MQLKSAQ 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 724 ETLEKELQTLKEKFASTSeEAVSAQTRMQDTVNKlhqKEEQFNVLSSELEKLRENLTDMEakfKEKDDREDQLVKAKEKL 803
Cdd:pfam15921 706 SELEQTRNTLKSMEGSDG-HAMKVAMGMQKQITA---KRGQIDALQSKIQFLEEAMTNAN---KEKHFLKEEKNKLSQEL 778
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 804 ENDIAEIMKMSGDnssqltkmNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 883
Cdd:pfam15921 779 STVATEKNKMAGE--------LEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQG 850
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 884 kllelekkmeTSYNQCQDLKAKYEKASSETKTkHEEI--LQNLQKMLADTEDKLKAAQE-ANRDLMQDMEELKTQADKAK 960
Cdd:pfam15921 851 ----------PGYTSNSSMKPRLLQPASFTRT-HSNVpsSQSTASFLSHHSRKTNALKEdPTRDLKQLLQELRSVINEEP 919
|
...
gi 568937390 961 SLT 963
Cdd:pfam15921 920 TVQ 922
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
924-1506 |
2.51e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.36 E-value: 2.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 924 LQKMLADTEDKLKAAQEANRDLMQDM-----EELKTQADKAKSLTYLLTSAKKEIEVMSEELRglkSEKQLYAQEANALK 998
Cdd:pfam15921 247 LEALKSESQNKIELLLQQHQDRIEQLiseheVEITGLTEKASSARSQANSIQSQLEIIQEQAR---NQNSMYMRQLSDLE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 999 LEKGSLLSKLIEVETkitlLQEDQQKlwsvnetlHLEKERVSEEKQVAEKRYQQEHRDRES--LVAEREKLLKEINAAQE 1076
Cdd:pfam15921 324 STVSQLRSELREAKR----MYEDKIE--------ELEKQLVLANSELTEARTERDQFSQESgnLDDQLQKLLADLHKREK 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1077 ELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELV 1156
Cdd:pfam15921 392 ELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1157 KDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQfekdtlrqgqeKLSASLEATLQVKQLLSTEA 1236
Cdd:pfam15921 472 STKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEIT-----------KLRSRVDLKLQELQHLKNEG 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1237 ETLR-TQLDCASKALRKAELD--MRQLQTSNSSLTKLLEEIKTCRAITDSECIQLlhEKEslaASERTLLAEKEELLSEN 1313
Cdd:pfam15921 541 DHLRnVQTECEALKLQMAEKDkvIEILRQQIENMTQLVGQHGRTAGAMQVEKAQL--EKE---INDRRLELQEFKILKDK 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1314 RiiTEKLSKQSEEVARLEMglnEKITYLTSEKEvACQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKtigDLRRK 1393
Cdd:pfam15921 616 K--DAKIRELEARVSDLEL---EKVKLVNAGSE-RLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKR---NFRNK 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1394 YDQ-EATNRRIVMQEKmKLLGNIDALKKELQERKKEN-----------QELTSSKCDLSLLLKEAQ---DAKKNLEKEHT 1458
Cdd:pfam15921 687 SEEmETTTNKLKMQLK-SAQSELEQTRNTLKSMEGSDghamkvamgmqKQITAKRGQIDALQSKIQfleEAMTNANKEKH 765
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 568937390 1459 SMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQTL 1506
Cdd:pfam15921 766 FLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVAL 813
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
827-1664 |
5.57e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.44 E-value: 5.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 827 ELRLKERSVEELqLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeekkeLEEKLLELEKKMETSYNQCQDLKAKY 906
Cdd:pfam02463 164 GSRLKRKKKEAL-KKLIEETENLAELIIDLEELKLQELKLKEQAKKA-------LEYYQLKEKLELEEEYLLYLDYLKLN 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 907 EKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTylltsakKEIEVMSEELRGLKSE 986
Cdd:pfam02463 236 EERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLA-------KEEEELKSELLKLERR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 987 KQLYAQEANALKLEKGSLLSKLIEVETKITllqEDQQKLWSVNETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAEREK 1066
Cdd:pfam02463 309 KVDDEEKLKESEKEKKKAEKELKKEKEEIE---ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1067 LLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKL-TAENLVLVKDKDDVI 1145
Cdd:pfam02463 386 LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEkEELEKQELKLLKDEL 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1146 QKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEAT 1225
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1226 LQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQlLHEKESLAASERTLLAE 1305
Cdd:pfam02463 546 STAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQ-LDKATLEADEDDKRAKV 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1306 KEELLSENRIITEKLSK-----QSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADR 1380
Cdd:pfam02463 625 VEGILKDTELTKLKESAkakesGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKK 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1381 ESSIKTIgdLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSK------CDLSLLLKEAQDAKKNLE 1454
Cdd:pfam02463 705 EQREKEE--LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKkeekeeEKSELSLKEKELAEEREK 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1455 KEHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSLYENNKLHGRVV-L 1533
Cdd:pfam02463 783 TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEeE 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1534 LEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAalsKSKLELQELHSCLTK 1613
Cdd:pfam02463 863 ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK---EEAEILLKYEEEPEE 939
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 568937390 1614 ILDDLRLNHEVALTERAEVLQDNKNLLAEKREMMLRNEEALKEKEKLEESY 1664
Cdd:pfam02463 940 LLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERY 990
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
724-1253 |
9.03e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 9.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 724 ETLEkELQTLKEKFASTSEEAvsAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 803
Cdd:COG4913 252 ELLE-PIRELAERYAAARERL--AELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 804 ENDIAEImkmSGDNSSQLtkmndelrlkERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 883
Cdd:COG4913 329 EAQIRGN---GGDRLEQL----------EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 884 KLLELEKKMETSYnqcqDLKAKYEKASSETKTKHEEIL----------QNLQKMLADTEDKLKAAQEANR---DLMQDME 950
Cdd:COG4913 396 LEEELEALEEALA----EAEAALRDLRRELRELEAEIAslerrksnipARLLALRDALAEALGLDEAELPfvgELIEVRP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 951 E-----------LKTQAdkakslTYLLTSAKKEIEV--------MSEELRGLKSEKQLyaQEANALKLEKGSLLSKLIEV 1011
Cdd:COG4913 472 EeerwrgaiervLGGFA------LTLLVPPEHYAAAlrwvnrlhLRGRLVYERVRTGL--PDPERPRLDPDSLAGKLDFK 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1012 ETKIT--LLQE--DQQKLWSVN--ETLHLEKERVSEEKQVAEKRYQQEHRDR-----------------ESLVAEREKLL 1068
Cdd:COG4913 544 PHPFRawLEAElgRRFDYVCVDspEELRRHPRAITRAGQVKGNGTRHEKDDRrrirsryvlgfdnraklAALEAELAELE 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1069 KEINAAQEELLKMHMENDSLEASKVSMQVLiEELRFCKDKLMAmsekARAEKEHLEGQVKKLTAENlvlvkdkdDVIQKL 1148
Cdd:COG4913 624 EELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVAS----AEREIAELEAELERLDASS--------DDLAAL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1149 QSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEatlQV 1228
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVER---EL 767
|
570 580
....*....|....*....|....*
gi 568937390 1229 KQLLSTEAETLRTQLDCASKALRKA 1253
Cdd:COG4913 768 RENLEERIDALRARLNRAEEELERA 792
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
344-810 |
9.40e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 9.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 344 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREK 423
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 424 VELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppGDVDMSLSLLQ 503
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE--EALEEAAEEEA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 504 EISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENS-------DVIALW 576
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavAVLIGV 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 577 KSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKT-------QIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQ 649
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagratflPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 650 AKLMK---------IIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVN 720
Cdd:COG1196 613 ARYYVlgdtllgrtLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 721 QVKETLEKELQTLKEKFASTSEEAVSAQTRMQDtvnKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAK 800
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEA---LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
490
....*....|
gi 568937390 801 EKLENDIAEI 810
Cdd:COG1196 770 ERLEREIEAL 779
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
684-1411 |
1.25e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 57.29 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 684 TLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVnqvKETLEKELQTLKEkfastseeavsAQTRMQDTVNKLHQKEE 763
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHER---KQVLEKELKHLRE-----------ALQQTQQSHAYLTQKRE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 764 QFNvlssELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEND-----IAEIMKMSGDNSSQLTKMNDELRLKERSVE-E 837
Cdd:TIGR00618 251 AQE----EQLKKQQLLKQLRARIEELRAQEAVLEETQERINRArkaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAkL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 838 LQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKH 917
Cdd:TIGR00618 327 LMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQ 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 918 EEILQNLQKMLADTEDKLK-AAQEANRDLMQDMEELKTQAdkaksLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANA 996
Cdd:TIGR00618 407 REQATIDTRTSAFRDLQGQlAHAKKQQELQQRYAELCAAA-----ITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQI 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 997 LKLEKgsllSKLIEVETKITLLQEDQQKLwsVNETLHLEKE------------RVSEEKQVAEKRYQQEHRDRESLVAER 1064
Cdd:TIGR00618 482 HLQET----RKKAVVLARLLELQEEPCPL--CGSCIHPNPArqdidnpgpltrRMQRGEQTYAQLETSEEDVYHQLTSER 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1065 EKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAEnlvlvKDKDDV 1144
Cdd:TIGR00618 556 KQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE-----QDLQDV 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1145 IQKLQSAYEELVKDQKALVQEIEDLTTEKKSaaEKQMSLDNTCLTLKAERENLLQT----NRDLQFEKDTLRQGQEKLSA 1220
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQERVR--EHALSIRVLPKELLASRQLALQKmqseKEQLTYWKEMLAQCQTLLRE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1221 SLEATL-------QVKQLLSTEAETLRTQLDCASKALRKAELDMR---QLQTSNSSLTKLLEEIKTCRAITDSECIQLLH 1290
Cdd:TIGR00618 709 LETHIEeydrefnEIENASSSLGSDLAAREDALNQSLKELMHQARtvlKARTEAHFNNNEEVTAALQTGAELSHLAAEIQ 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1291 EKESLAASERTLLAEKEELLSENR--IITEKLSKQSEEVARLEMGLN--EKITYLTSEKEVACQKVAKLKKQQDSLLKEK 1366
Cdd:TIGR00618 789 FFNRLREEDTHLLKTLEAEIGQEIpsDEDILNLQCETLVQEEEQFLSrlEEKSATLGEITHQLLKYEECSKQLAQLTQEQ 868
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 568937390 1367 SALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKL 1411
Cdd:TIGR00618 869 AKIIQLSDKLNGINQIKIQFDGDALIKFLHEITLYANVRLANQSE 913
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
2058-2074 |
1.51e-07 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.00 E-value: 1.51e-07
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
335-858 |
1.91e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGH---DQHVLELEAKMDQ 411
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRrelEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 412 LRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLEsskp 491
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE---- 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 492 pgdvdmslSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD 571
Cdd:COG1196 404 --------ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 572 VIALWKSKLETAIAS----HQQAMEELKVSFSKGIGT---------DSAEFAELKTQIERLRLDYQHEIESLQSKQDSER 638
Cdd:COG1196 476 EAALAELLEELAEAAarllLLLEAEADYEGFLEGVKAalllaglrgLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 639 SAHAKEMETmQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQ 718
Cdd:COG1196 556 DEVAAAAIE-YLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 719 VNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvLSSELEKLRENLTDMEAKFKEKDDREDQLVK 798
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE---LEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 799 AKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGE 858
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1231-1797 |
1.97e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 56.29 E-value: 1.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1231 LLSTEAETLRTQLDCASKalRKAELDMRqlqtsnsslTKLLEEIKTCRAITDSECIQLLHEKESLAASERTLLAEKEELL 1310
Cdd:pfam05557 31 ELEKKASALKRQLDRESD--RNQELQKR---------IRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1311 SENRIITEKLSKQSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNgDLLADRESSIKtigDL 1390
Cdd:pfam05557 100 ADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQ-SSLAEAEQRIK---EL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1391 RRKYDQEATNRRIVMQEKMKLLgNIDALKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQA------K 1464
Cdd:pfam05557 176 EFEIQSQEQDSEIVKNSKSELA-RIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEKYREEAatleleK 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1465 DNLNAELKTCcceKNMLLRDGLNLQEEcQKLNEEIREIQQTLILEKEarakESETSLYENNKLHGRVVLLEEEIQRLRVC 1544
Cdd:pfam05557 255 EKLEQELQSW---VKLAQDTGLNLRSP-EDLSRRIEQLQQREIVLKE----ENSSLTSSARQLEKARRELEQELAQYLKK 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1545 SEQLQTENftltqeKTNSEQKvEEIIKEKELLSAETAQLAANIETLKSDFaALSKSKLELQELHSCLTKILDDLRlNHEV 1624
Cdd:pfam05557 327 IEDLNKKL------KRHKALV-RRLQRRVLLLTKERDGYRAILESYDKEL-TMSNYSPQLLERIEEAEDMTQKMQ-AHNE 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1625 ALTERAEVLQDNKNLLAEKREMMLRNEEALKEKEKLEESYFIlQKEISQLAQTNSHISA---------NLLESQSENRTL 1695
Cdd:pfam05557 398 EMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYS-KEEVDSLRRKLETLELerqrlreqkNELEMELERRCL 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1696 RKDKSKLTLKIRELETLHSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLkenNLKTVEELNKSKE 1775
Cdd:pfam05557 477 QGDYDPKKTKVLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTSTM---NFKEVLDLRKELE 553
|
570 580
....*....|....*....|...
gi 568937390 1776 LLSVENQKMEE-FKKEIETLKQA 1797
Cdd:pfam05557 554 SAELKNQRLKEvFQAKIQEFRDV 576
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1640-2016 |
2.18e-07 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 56.62 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1640 LAEKREMMLRNEEALKEKEKLEESYFILQkeiSQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAq 1719
Cdd:COG5022 805 LLGSRKEYRSYLACIIKLQKTIKREKKLR---ETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELA- 880
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1720 taedamqimEQMTKEKTETLASLEDTKQTNARLQNEL---------DTLKENNLKTvEELNKSKELL---SVENQKMEEF 1787
Cdd:COG5022 881 ---------ERQLQELKIDVKSISSLKLVNLELESEIielkkslssDLIENLEFKT-ELIARLKKLLnniDLEEGPSIEY 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1788 KK-----EIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLR------ 1856
Cdd:COG5022 951 VKlpelnKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEvaelqs 1030
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1857 ESEFRKDADEEKASLQKSISLTSALLtekdAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKL-ELKVKNLELqlk 1935
Cdd:COG5022 1031 ASKIISSESTELSILKPLQKLKGLLL----LENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLkTINVKDLEV--- 1103
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1936 eNKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKK 2015
Cdd:COG5022 1104 -TNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRL 1182
|
.
gi 568937390 2016 K 2016
Cdd:COG5022 1183 Y 1183
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
909-1986 |
2.39e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.28 E-value: 2.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 909 ASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMeelKTQADKAKSLTYLLTSAKKEIEVMSEELRGlKSEKQ 988
Cdd:pfam15921 128 AMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDS---NTQIEQLRKMMLSHEGVLQEIRSILVDFEE-ASGKK 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 989 LYAQEANALKLEK--GSLLSKLI-EVETKITLLQedqQKLWSVNETLhlekERVSEEKQVAEKRYQQEHRDR-ESLVAER 1064
Cdd:pfam15921 204 IYEHDSMSTMHFRslGSAISKILrELDTEISYLK---GRIFPVEDQL----EALKSESQNKIELLLQQHQDRiEQLISEH 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1065 EKllkEINAAQEELLKMHMENDSLEAskvsmqvlieelrfckdKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDV 1144
Cdd:pfam15921 277 EV---EITGLTEKASSARSQANSIQS-----------------QLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREA 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1145 IQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAErenLLQTNRDLQFEKD-TLRQGQEKLSASLE 1223
Cdd:pfam15921 337 KRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD---LHKREKELSLEKEqNKRLWDRDTGNSIT 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1224 ATLQVKQLLSTEAETLRtqLDCASKALR-----KAELDMRQLQTSNSSLTKLleeiktcraitDSECIQLLHEKESLAAS 1298
Cdd:pfam15921 414 IDHLRRELDDRNMEVQR--LEALLKAMKsecqgQMERQMAAIQGKNESLEKV-----------SSLTAQLESTKEMLRKV 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1299 ERTLLAEKEELLSENRIITEkLSKQSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLK---EKSALELQNGD 1375
Cdd:pfam15921 481 VEELTAKKMTLESSERTVSD-LTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNvqtECEALKLQMAE 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1376 LLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLlgnidalKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEK 1455
Cdd:pfam15921 560 KDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQL-------EKEINDRRLELQEFKILKDKKDAKIRELEARVSDLEL 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1456 EHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIReiqqtlILEKEARAKESETSLyENNKLhgrvvlle 1535
Cdd:pfam15921 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE------VLKRNFRNKSEEMET-TTNKL-------- 697
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1536 eEIQRLRVCSEQLQTENfTLTQEKTNSEQKVEEIIKEKELLSAETAQ---LAANIETLKSDFAALSKSKLELQELHSclt 1612
Cdd:pfam15921 698 -KMQLKSAQSELEQTRN-TLKSMEGSDGHAMKVAMGMQKQITAKRGQidaLQSKIQFLEEAMTNANKEKHFLKEEKN--- 772
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1613 kilddlrlnhevALTERAEVLQDNKNLLAEKREMMLRNEEALKEKEKLEEsyFILQKEISQLAQTNSHIsanllesQSEN 1692
Cdd:pfam15921 773 ------------KLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME--VALDKASLQFAECQDII-------QRQE 831
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1693 RTLRKDKSKLTLKIRELETlhsftAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQN---ELDTLKENNLKTVEE 1769
Cdd:pfam15921 832 QESVRLKLQHTLDVKELQG-----PGYTSNSSMKPRLLQPASFTRTHSNVPSSQSTASFLSHhsrKTNALKEDPTRDLKQ 906
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1770 LnkSKELLSVENQkmeefkkeietlkqaaaQKSQQLSALQEENVklAEELGRTRDEVTS---HQKLEEERSVLNNQLLEM 1846
Cdd:pfam15921 907 L--LQELRSVINE-----------------EPTVQLSKAEDKGR--APSLGALDDRVRDciiESSLRSDICHSSSNSLQT 965
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1847 KKSLPSNTLRESEFRKDADEekaslqksISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELK 1926
Cdd:pfam15921 966 EGSKSSETCSREPVLLHAGE--------LEDPSSCFTFPSTASPSVKNSASRSFHSSPKKSPVHSLLTSSAEGSIGSSSQ 1037
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568937390 1927 VKNlelqlkenKRQLSSSSGNTDAQAEEDERAQES----QQMIDFLNSVIVDLQRKNQDLKMKV 1986
Cdd:pfam15921 1038 YRS--------AKTIHSPDSVKDSQSLPIETTGKTcrklQNRLESLQTLVEDLQLKNQAMSSMI 1093
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
412-1208 |
2.48e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.13 E-value: 2.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 412 LRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVsEKSRIMELEKDLALRAQEVAELRRRLESSKp 491
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE-EYLLYLDYLKLNEERIDLLQELLRDEQEEI- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 492 pgdvdmsLSLLQEISALQEKLEAIHTDHQGEMtslkehfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD 571
Cdd:pfam02463 254 -------ESSKQEIEKEEEKLAQVLKENKEEE---------KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 572 VIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAK 651
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 652 LMKIIKEKEDSLEAVKARldSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQ 731
Cdd:pfam02463 398 ELKSEEEKEAQLLLELAR--QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 732 TLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIM 811
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 812 KMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANEN-------------ASFLQKSIGEVTLKAEQSQQQAARKHEEEK 878
Cdd:pfam02463 556 TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKsiavleidpilnlAQLDKATLEADEDDKRAKVVEGILKDTELT 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 879 KELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK 958
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKL 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 959 AKSLTYLLTSAKKEIE-VMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEdqqklwsvnETLHLEKE 1037
Cdd:pfam02463 716 KLEAEELLADRVQEAQdKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAE---------EREKTEKL 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1038 RVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAMSEKAR 1117
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKE 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1118 AEKEHLEGQVKKLTAENLVLVK---------DKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCL 1188
Cdd:pfam02463 867 ELLQELLLKEEELEEQKLKDELeskeekekeEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEAD 946
|
810 820
....*....|....*....|
gi 568937390 1189 TLKAERENLLQTNRDLQFEK 1208
Cdd:pfam02463 947 EKEKEENNKEEEEERNKRLL 966
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
358-873 |
2.92e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 2.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 358 EKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKV 437
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 438 EDLQFRVEEESiTKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLE---- 513
Cdd:PTZ00121 1367 EAAEKKKEEAK-KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEeakk 1445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 514 AIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEK-----LSKENESLRSKLDHANKENSDVialwKSKLETAIASHQ 588
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAkkadeAKKKAEEAKKKADEAKKAAEAK----KKADEAKKAEEA 1521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 589 QAMEELKVSFSKGiGTDSAEFAELKTQIERLRldYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKA 668
Cdd:PTZ00121 1522 KKADEAKKAEEAK-KADEAKKAEEKKKADELK--KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 669 RLDSAEDQHLVEmedTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKET--LEKELQTLKEKFASTSEEAVS 746
Cdd:PTZ00121 1599 KLYEEEKKMKAE---EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELkkAEEENKIKAAEEAKKAEEDKK 1675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 747 AQTRMQDTVNKLHQKEEQFNVLSSELEKLREnltdMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSsqltKMND 826
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEE----LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK----KKAE 1747
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568937390 827 ELRLKERSVEELQlKLTKANENASFLQKSIGEVTLKAEQSQQQAARK 873
Cdd:PTZ00121 1748 EAKKDEEEKKKIA-HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1113-1926 |
3.50e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 3.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1113 SEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKA 1192
Cdd:TIGR02169 186 IERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1193 ERENLLQTNRDLQFEKDTL-----RQGQEKLsasLEATLQVKQLLSTEAETLRTQLDcASKALRKAELDMRQLQTSNSSL 1267
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDLgeeeqLRVKEKI---GELEAEIASLERSIAEKERELED-AEERLAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1268 TKLLEEIKTCRAitdseciQLLHEKESLAASERTLLA----------------------------EKEELLSENRIITEK 1319
Cdd:TIGR02169 342 EREIEEERKRRD-------KLTEEYAELKEELEDLRAeleevdkefaetrdelkdyrekleklkrEINELKRELDRLQEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1320 LSKQSEEVARLEM---GLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLRRKYDQ 1396
Cdd:TIGR02169 415 LQRLSEELADLNAaiaGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1397 EATNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSKCDLSLLLKEA-------------QDAKKNLE--KEHTSMI 1461
Cdd:TIGR02169 495 AEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAagnrlnnvvveddAVAKEAIEllKRRKAGR 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1462 QAKDNLNaELKTCCCEKNMLLRDG-----LNLQEECQKLNEEIREI-QQTLILEKEARAKES---------ETSLYE--- 1523
Cdd:TIGR02169 575 ATFLPLN-KMRDERRDLSILSEDGvigfaVDLVEFDPKYEPAFKYVfGDTLVVEDIEAARRLmgkyrmvtlEGELFEksg 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1524 --------NNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDfa 1595
Cdd:TIGR02169 654 amtggsraPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE-- 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1596 aLSKSKLELQELHSCLTKIlddlrlnhEVALTERAEVLQDNKNLLAEKREMMLRNEEALKEKEK--LEESYFILQKEISQ 1673
Cdd:TIGR02169 732 -EEKLKERLEELEEDLSSL--------EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEArlSHSRIPEIQAELSK 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1674 LAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAMQIMEQMTKektetlasLEDTKQTNARLQ 1753
Cdd:TIGR02169 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK--------KEELEEELEELE 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1754 NELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLE 1833
Cdd:TIGR02169 875 AALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1834 EERSVLNNQLLEMKKSLPSNTLRESEFR---KDADEEKASLQKSISLTSALLtEKDAELEKLRNEVtVLRGENATAKSLH 1910
Cdd:TIGR02169 955 DVQAELQRVEEEIRALEPVNMLAIQEYEevlKRLDELKEKRAKLEEERKAIL-ERIEEYEKKKREV-FMEAFEAINENFN 1032
|
890
....*....|....*.
gi 568937390 1911 SVVQTLESDKVKLELK 1926
Cdd:TIGR02169 1033 EIFAELSGGTGELILE 1048
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
531-1133 |
4.82e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.05 E-value: 4.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 531 GAREEAFQKEIKALHTATEKLSKENESLRSKLDHANkENSDVIALWKSKLETAIASHQQAMEELkvsfskgigtdsaefA 610
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYE-EQREQARETRDEADEVLEEHEERREEL---------------E 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 611 ELKTQIERLRLDyqheieslQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEavKARLDSAEDQHLVEMEDTLNKLQE 690
Cdd:PRK02224 255 TLEAEIEDLRET--------IAETEREREELAEEVRDLRERLEELEEERDDLLA--EAGLDDADAEAVEARREELEDRDE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 691 AeikansitkelqekelvltgLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSS 770
Cdd:PRK02224 325 E--------------------LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRRE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 771 ELEKLRENLTDMEAKFkekDDREDQLVKAKEKLEndiaEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANenas 850
Cdd:PRK02224 385 EIEELEEEIEELRERF---GDAPVDLGNAEDFLE----ELREERDELREREAELEATLRTARERVEEAEALLEAGK---- 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 851 flqksigevtlKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKT-----KHEEILQNLQ 925
Cdd:PRK02224 454 -----------CPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAedrieRLEERREDLE 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 926 KMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTyllTSAKKEIEVMSEELRGLKSEKQLYAQEANAL-KLEkgSL 1004
Cdd:PRK02224 523 ELIAERRETIEEKRERAEELRERAAELEAEAEEKREAA---AEAEEEAEEAREEVAELNSKLAELKERIESLeRIR--TL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1005 LSKLIEVETKITLLQEDQQKLWSVN----ETLHLEKERVSE-EKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEell 1079
Cdd:PRK02224 598 LAAIADAEDEIERLREKREALAELNderrERLAEKRERKRElEAEFDEARIEEAREDKERAEEYLEQVEEKLDELRE--- 674
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1080 kmhmENDSLEASKVSMQVLIEELRFCKDKLMAMSEKARA------EKEHLEGQVKKLTAE 1133
Cdd:PRK02224 675 ----ERDDLQAEIGAVENELEELEELRERREALENRVEAlealydEAEELESMYGDLRAE 730
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
904-1477 |
5.29e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.23 E-value: 5.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 904 AKYEKASSETKTKHEEiLQNLQKMLADTE----DKLKAAQEANRDLMQDMEELKTQ-ADKAKSLTYLLTSAKKEIEVMSE 978
Cdd:pfam12128 244 TKLQQEFNTLESAELR-LSHLHFGYKSDEtliaSRQEERQETSAELNQLLRTLDDQwKEKRDELNGELSAADAAVAKDRS 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 979 ELRGLKSEKQLYAQ---EANALKLEKG-SLLSKLIEVETKITLLQEDQQKLWSVNETLhlEKERVSEEKQVAEKRYQQEH 1054
Cdd:pfam12128 323 ELEALEDQHGAFLDadiETAAADQEQLpSWQSELENLEERLKALTGKHQDVTAKYNRR--RSKIKEQNNRDIAGIKDKLA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1055 RDREslvaEREKLLKEINA---AQEELLKMHMENDSLEASKVSMQVL--IEELRFCKDKLMAMSE-------------KA 1116
Cdd:pfam12128 401 KIRE----ARDRQLAVAEDdlqALESELREQLEAGKLEFNEEEYRLKsrLGELKLRLNQATATPElllqlenfderieRA 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1117 RAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQKALVQE-----------IEDLTTEKKSAAEKQMSLDN 1185
Cdd:pfam12128 477 REEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELelqlfpqagtlLHFLRKEAPDWEQSIGKVIS 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1186 TCLTLK------------AERENLLQTNRDLQ--------FEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDC 1245
Cdd:pfam12128 557 PELLHRtdldpevwdgsvGGELNLYGVKLDLKridvpewaASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEK 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1246 ASK-------ALRKAELDMRQLQTSNSSLT-KLLEEIKTCRAITDSECIQLLHEKESLAASERTLLAEKEELLSENRiiT 1317
Cdd:pfam12128 637 ASReetfartALKNARLDLRRLFDEKQSEKdKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREAR--T 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1318 EKLSKQSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLRRKyDQE 1397
Cdd:pfam12128 715 EKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVR-RQE 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1398 ATNRRIVMQEKMKLlgNIDALKKELQERKKENQELtssKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCCCE 1477
Cdd:pfam12128 794 VLRYFDWYQETWLQ--RRPRLATQLSNIERAISEL---QQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCE 868
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
685-1275 |
5.66e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 5.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 685 LNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDT---VNKLHQK 761
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLekeVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 762 EEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNS--SQLTKMNDELRLKERSVEELq 839
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEeyIKLSEFYEEYLDELREIEKR- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 840 lkLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeekkeleEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEE 919
Cdd:PRK03918 316 --LSRLEEEINGIEERIKELEEKEERLEELKKKL---------KELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 920 ILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLyaqeaNALKL 999
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELL-----EEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1000 EKGSLLSKLIEVETKITLLQEDQQKLwsvnETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELL 1079
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELREL----EKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLI 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1080 KMHMENDSLEASkvsmqvlIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQ 1159
Cdd:PRK03918 536 KLKGEIKSLKKE-------LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1160 KAlVQEIEDLTTEKKSAAEkqmsldntclTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEATLQVKQL-LSTEAET 1238
Cdd:PRK03918 609 DA-EKELEREEKELKKLEE----------ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLeLSRELAG 677
|
570 580 590
....*....|....*....|....*....|....*..
gi 568937390 1239 LRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIK 1275
Cdd:PRK03918 678 LRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1000-1744 |
1.08e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.20 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1000 EKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELL 1079
Cdd:TIGR00618 164 EKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1080 KMHMENDSLEASKVSMQVLIEELRFCKDklmAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQ 1159
Cdd:TIGR00618 244 YLTQKREAQEEQLKKQQLLKQLRARIEE---LRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKM 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1160 KALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQF-----EKDTLRQGQEKLSASLEATLQVKQLLST 1234
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIreiscQQHTLTQHIHTLQQQKTTLTQKLQSLCK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1235 EAETLRTQLDCASkALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERTLLAEKEELLSENR 1314
Cdd:TIGR00618 401 ELDILQREQATID-TRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1315 IITEKLSKQSEEVARLEMGLNEKityltsEKEVACQKVAKLKKQQDSLLKEKSALELQNGDllaDRESSIKTIGDLRRKY 1394
Cdd:TIGR00618 480 QIHLQETRKKAVVLARLLELQEE------PCPLCGSCIHPNPARQDIDNPGPLTRRMQRGE---QTYAQLETSEEDVYHQ 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1395 DQEATNRRIVMQEKMKLlgnidalkkELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKehtsmiqakdnlNAELKTC 1474
Cdd:TIGR00618 551 LTSERKQRASLKEQMQE---------IQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK------------LSEAEDM 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1475 CCEKNMLLRDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSLYENNKLHGRVV--LLEEEIQRLRVCSEQLQTEN 1552
Cdd:TIGR00618 610 LACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIrvLPKELLASRQLALQKMQSEK 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1553 FTLTQEKtnseqkvEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHEVALTERAEV 1632
Cdd:TIGR00618 690 EQLTYWK-------EMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEA 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1633 lQDNKNLLAEKREMMLRNEEALK-EKEKLEESYFILQKEISQL-AQTNSHISANLLESQSENRTLRKDKSKLTLKIREL- 1709
Cdd:TIGR00618 763 -HFNNNEEVTAALQTGAELSHLAaEIQFFNRLREEDTHLLKTLeAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKs 841
|
730 740 750
....*....|....*....|....*....|....*.
gi 568937390 1710 ETLHSFTAAQTA-EDAMQIMEQMTKEKTETLASLED 1744
Cdd:TIGR00618 842 ATLGEITHQLLKyEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1443-1944 |
2.28e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1443 LKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQTL------ILEKEARAKE 1516
Cdd:TIGR04523 49 LKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIkndkeqKNKLEVELNK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1517 SETSLYENNKLHGRVVlleEEIQRLRVCSEQLQTENFTLTQEKTNSEqkveeiiKEKELLSAETAQLAANIETLKSDFAA 1596
Cdd:TIGR04523 129 LEKQKKENKKNIDKFL---TEIKKKEKELEKLNNKYNDLKKQKEELE-------NELNLLEKEKLNIQKNIDKIKNKLLK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1597 LSKSKLELQ---ELHSCLTKILDDLRlNHEVALTERAEVLQDNKNllaEKREMMLRNEEALKE-KEKLEESYFILQKEIS 1672
Cdd:TIGR04523 199 LELLLSNLKkkiQKNKSLESQISELK-KQNNQLKDNIEKKQQEIN---EKTTEISNTQTQLNQlKDEQNKIKKQLSEKQK 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1673 QLAQTNSHIS---ANLLESQSENRTLRKDKSKLTLKireleTLHSFTAAQTAEdamqiMEQMTKEKTETLASLEDTKQTN 1749
Cdd:TIGR04523 275 ELEQNNKKIKeleKQLNQLKSEISDLNNQKEQDWNK-----ELKSELKNQEKK-----LEEIQNQISQNNKIISQLNEQI 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1750 ARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL--------------KQAAAQKSQQLSALQEENVKL 1815
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLesqindleskiqnqEKLNQQKDEQIKKLQQEKELL 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1816 AEELGRTRDEVTSHQK----LEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASLQKsislTSALLTEKDAELEK 1891
Cdd:TIGR04523 425 EKEIERLKETIIKNNSeikdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ----KQKELKSKEKELKK 500
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 568937390 1892 LRNEVTVLRGENATAK----SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSS 1944
Cdd:TIGR04523 501 LNEEKKELEEKVKDLTkkisSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE 557
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
721-1652 |
2.57e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.13 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 721 QVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLT---DMEAKFKEKDDREDQLV 797
Cdd:TIGR00606 203 QEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSkimKLDNEIKALKSRKKQME 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 798 KAKEKLENDIAEIMKMSGDNSSQLTKMND-ELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEE 876
Cdd:TIGR00606 283 KDNSELELKMEKVFQGTDEQLNDLYHNHQrTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEH 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 877 EKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLmqdmeelktqA 956
Cdd:TIGR00606 363 IRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEI----------R 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 957 DKAKSLTYLLTSAKKEIEVMSEELRGLKSE-KQLYAQEANALKLEKG--------SLLSKLIEVETKITLLQEDQQKLWS 1027
Cdd:TIGR00606 433 DEKKGLGRTIELKKEILEKKQEELKFVIKElQQLEGSSDRILELDQElrkaerelSKAEKNSLTETLKKEVKSLQNEKAD 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1028 VNETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAErEKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKD 1107
Cdd:TIGR00606 513 LDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKD-EQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRD 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1108 KLMAMS---EKARAEKEHLEGQVKKLTAENLVLVKDKDDViqklqSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLD 1184
Cdd:TIGR00606 592 RLAKLNkelASLEQNKNHINNELESKEEQLSSYEDKLFDV-----CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1185 NTCLTLKAERENLLQT-NRDLQFEKDTlrqgqEKLSASLEATLQvkqLLSTEAETLRTQLdcaSKALRKAELDMRQLQTS 1263
Cdd:TIGR00606 667 QFITQLTDENQSCCPVcQRVFQTEAEL-----QEFISDLQSKLR---LAPDKLKSTESEL---KKKEKRRDEMLGLAPGR 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1264 NSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASER---TLLAEKE--ELLSENRIITEKLSKQSEEVARLEMGLNEKI 1338
Cdd:TIGR00606 736 QSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETllgTIMPEEEsaKVCLTDVTIMERFQMELKDVERKIAQQAAKL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1339 TylTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADREssiKTIGDLRRKYDQEATNRRIVMQEkmklLGNIDAL 1418
Cdd:TIGR00606 816 Q--GSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQ---EQIQHLKSKTNELKSEKLQIGTN----LQRRQQF 886
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1419 KKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKdnlNAELKTCCCEKNMLLRDGLNLQEECQKLNEE 1498
Cdd:TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK---ETSNKKAQDKVNDIKEKVKNIHGYMKDIENK 963
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1499 IREIQQTLILEKEARAKESETSLYENNKLHGRVvlleeeiqrlrvcseqlqTENFTLTQEKTNSEQKVEEIIKEKELLSA 1578
Cdd:TIGR00606 964 IQDGKDDYLKQKETELNTVNAQLEECEKHQEKI------------------NEDMRLMRQDIDTQKIQERWLQDNLTLRK 1025
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 1579 ETAQLAANIETLKSDFAALSKSK-LELQELHSCLTKILDDLRLNHEVALTERAEVLQDNKNLLAEKREMMLRNEE 1652
Cdd:TIGR00606 1026 RENELKEVEEELKQHLKEMGQMQvLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAE 1100
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
624-1368 |
2.79e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.87 E-value: 2.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 624 QHEIESLQSKQDSERSAHAK---EMETMQAKlMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITK 700
Cdd:pfam01576 102 QQHIQDLEEQLDEEEAARQKlqlEKVTTEAK-IKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSK 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 701 ELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvLSSELEKLRENLT 780
Cdd:pfam01576 181 LKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEE---LQAALARLEEETA 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 781 DMEAKFKEKDDREDQLVKAKEKLENDIA---EIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIG 857
Cdd:pfam01576 258 QKNNALKKIRELEAQISELQEDLESERAarnKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALE 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 858 EVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKT-------------KHEEILQNL 924
Cdd:pfam01576 338 EETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTlqqakqdsehkrkKLEGQLQEL 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 925 QKMLADTE-------DKLKAAQEANRDLMQDMEELKTQADK-AKSLTYLLTSAKKEIEVMSEELRglksEKQLYAQEANA 996
Cdd:pfam01576 418 QARLSESErqraelaEKLSKLQSELESVSSLLNEAEGKNIKlSKDVSSLESQLQDTQELLQEETR----QKLNLSTRLRQ 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 997 LKLEKGSLLSKLIEVETKitlLQEDQQKLWSVNETLHLEKERVSEEKQVAE------KRYQQE----HRDRESLVAEREK 1066
Cdd:pfam01576 494 LEDERNSLQEQLEEEEEA---KRNVERQLSTLQAQLSDMKKKLEEDAGTLEaleegkKRLQRElealTQQLEEKAAAYDK 570
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1067 LLKEINAAQEELLKMHMENDS-------LEASKVSMQVLIEELRFCKDKLMAMSEKARAE-------------------- 1119
Cdd:pfam01576 571 LEKTKNRLQQELDDLLVDLDHqrqlvsnLEKKQKKFDQMLAEEKAISARYAEERDRAEAEareketralslaraleeale 650
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1120 -KEHLEGQVKKLTAENLVLVKDKDDV------IQKLQSAYEELVKDQKALVQEIEDlttEKKSAAEKQMSLDNTCLTLKA 1192
Cdd:pfam01576 651 aKEELERTNKQLRAEMEDLVSSKDDVgknvheLERSKRALEQQVEEMKTQLEELED---ELQATEDAKLRLEVNMQALKA 727
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1193 ERENLLQTNRDLQFEKDTLRQGQ-EKLSASLE-------ATLQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSN 1264
Cdd:pfam01576 728 QFERDLQARDEQGEEKRRQLVKQvRELEAELEderkqraQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQM 807
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1265 SSLTKLLEEIKTCRA---ITDSEC--------IQLLHEKESLAASER---TLLAEKEELLSENRIITEKLSKQSEEVARL 1330
Cdd:pfam01576 808 KDLQRELEEARASRDeilAQSKESekklknleAELLQLQEDLAASERarrQAQQERDELADEIASGASGKSALQDEKRRL 887
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 568937390 1331 E---MGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSA 1368
Cdd:pfam01576 888 EariAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAA 928
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
345-1084 |
2.92e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 2.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 345 KISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKV 424
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 425 ELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQE 504
Cdd:pfam02463 366 EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGK 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 505 ISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENS-------------D 571
Cdd:pfam02463 446 LTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVllalikdgvggriI 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 572 VIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETM--Q 649
Cdd:pfam02463 526 SAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPIlnL 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 650 AKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKE 729
Cdd:pfam02463 606 AQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKA 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 730 LQTL-KEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIA 808
Cdd:pfam02463 686 ESELaKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 809 EIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLEL 888
Cdd:pfam02463 766 KSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEE 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 889 EKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTS 968
Cdd:pfam02463 846 QKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKE 925
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 969 AKKEIEVMSEELRGLKSEKqlyaqeanalKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVseekqvaEK 1048
Cdd:pfam02463 926 EAEILLKYEEEPEELLLEE----------ADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEK-------EE 988
|
730 740 750
....*....|....*....|....*....|....*.
gi 568937390 1049 RYQQEHRDRESLVAEREKLLKEINAAQEELLKMHME 1084
Cdd:pfam02463 989 RYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLE 1024
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1482-1936 |
3.18e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 3.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1482 LRDGLN-LQEECQKLNEEIREIQQTLILEKEARAKESETsLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKT 1560
Cdd:PRK02224 204 LHERLNgLESELAELDEEIERYEEQREQARETRDEADEV-LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1561 NSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQElhSCLTKILDDLRLNHEV-ALTERAEVLQD-NKN 1638
Cdd:PRK02224 283 DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD--RLEECRVAAQAHNEEAeSLREDADDLEErAEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1639 LLAEKREMMLRNEEALKEKEKLEESYFILQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSfTAA 1718
Cdd:PRK02224 361 LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR-TAR 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1719 QTAEDAMQIMEQ-------MTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQ------KME 1785
Cdd:PRK02224 440 ERVEEAEALLEAgkcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRierleeRRE 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1786 EFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTS-HQKLEEERSV---LNNQLLEMKKSLPS-NTLRES-E 1859
Cdd:PRK02224 520 DLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEaEEEAEEAREEvaeLNSKLAELKERIESlERIRTLlA 599
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568937390 1860 FRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKslhsvVQTLESDKVKLELKVKNLELQLKE 1936
Cdd:PRK02224 600 AIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR-----IEEAREDKERAEEYLEQVEEKLDE 671
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
353-838 |
4.32e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 4.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 353 QEALKEKQQhIEQLLAERDLeRAEVAKATSHVGEIEQELALARDGHDQHVLEL-EAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:COG4913 242 EALEDAREQ-IELLEPIREL-AERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 432 EEKRKVEDLQFRVEEES-ITKGDLEvatvsekSRIMELEKDLALRAQEVAELRRRLES--SKPPGDVDMSLSLLQEISAL 508
Cdd:COG4913 320 ALREELDELEAQIRGNGgDRLEQLE-------REIERLERELEERERRRARLEALLAAlgLPLPASAEEFAALRAEAAAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 509 QEKLEAIHTDHQGEMTSLKehfgAREEAFQKEIKALhtateklSKENESLRSkldhaNKEN--SDVIALwKSKLETAIAS 586
Cdd:COG4913 393 LEALEEELEALEEALAEAE----AALRDLRRELREL-------EAEIASLER-----RKSNipARLLAL-RDALAEALGL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 587 HQQAM----EELKVSFSKGIGTDSAE----------------FAELKTQIERL----RLDYQHEIESLQSKQDSERSAHa 642
Cdd:COG4913 456 DEAELpfvgELIEVRPEEERWRGAIErvlggfaltllvppehYAAALRWVNRLhlrgRLVYERVRTGLPDPERPRLDPD- 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 643 kemeTMQAKLmkIIKEKEDSlEAVKARLDSAEDQHLVEMEDTLNKLQEA-----EIKANSITKELQEKELVLTGLQdsLN 717
Cdd:COG4913 535 ----SLAGKL--DFKPHPFR-AWLEAELGRRFDYVCVDSPEELRRHPRAitragQVKGNGTRHEKDDRRRIRSRYV--LG 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 718 QVNQVK-ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLH-------QKEEQFNVLS-----SELEKLRENLTDMEA 784
Cdd:COG4913 606 FDNRAKlAALEAELAELEEELAEAEERLEALEAELDALQERREalqrlaeYSWDEIDVASaereiAELEAELERLDASSD 685
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 568937390 785 KFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL 838
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1555-1807 |
4.44e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 52.21 E-value: 4.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1555 LTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHEvalTERAEVLQ 1634
Cdd:PLN02939 147 LNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGA---TEGLCVHS 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1635 DNKNLLAEKRE-MMLRNE-EALKEK----EKLEESYFILQKEISQLAQTNSHISANLLESQSenrtlrkDKSKL-TLKI- 1706
Cdd:PLN02939 224 LSKELDVLKEEnMLLKDDiQFLKAElievAETEERVFKLEKERSLLDASLRELESKFIVAQE-------DVSKLsPLQYd 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1707 ---RELETLHSF--TAAQTAEDAMQIMEQMT--KEKTETL-ASLEDTKQTnaRLQNELDTLKENNLKTVEE-LNKS-KEL 1776
Cdd:PLN02939 297 cwwEKVENLQDLldRATNQVEKAALVLDQNQdlRDKVDKLeASLKEANVS--KFSSYKVELLQQKLKLLEErLQASdHEI 374
|
250 260 270
....*....|....*....|....*....|....
gi 568937390 1777 LS---VENQKMEEFKKEIETLKQAAAQKSQQLSA 1807
Cdd:PLN02939 375 HSyiqLYQESIKEFQDTLSKLKEESKKRSLEHPA 408
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
352-1176 |
4.63e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 4.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 352 LQEALKEKQQHIEQLLAERD--------LERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRTMVEAADREK 423
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREkaeryqalLKEKREYEGYELLKEKEALERQKEAIERQ-LASLEEELEKLTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 424 VELLNQLEEEKRKVEDLqfrveeesitkGDLEVATVSEKSRIMELEKDLALRAQEVAELR-RRLESSKPPGDVDMSlSLL 502
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDL-----------GEEEQLRVKEKIGELEAEIASLERSIAEKERElEDAEERLAKLEAEID-KLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 503 QEISALQEKLEaihtDHQGEMTSLKEHFGAREEafqkEIKALHTATEKLSKENESLRSKLDHANKENSDVialwKSKLET 582
Cdd:TIGR02169 336 AEIEELEREIE----EERKRRDKLTEEYAELKE----ELEDLRAELEEVDKEFAETRDELKDYREKLEKL----KREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 583 AIASHQQAMEELKvsfskgigTDSAEFAELKTQIERlrldyqheIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKED- 661
Cdd:TIGR02169 404 LKRELDRLQEELQ--------RLSEELADLNAAIAG--------IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKy 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 662 --SLEAVKARLDSAED------QHLVEMEDTLNKLQEAEIKANSITKELQEKelvLTGLQDSLNQVNQVKETLEKELQTL 733
Cdd:TIGR02169 468 eqELYDLKEEYDRVEKelsklqRELAEAEAQARASEERVRGGRAVEEVLKAS---IQGVHGTVAQLGSVGERYATAIEVA 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 734 ---KEKFASTSEEAVSAQ------------------TRMQDT---VNKLHQK------------EEQF----------NV 767
Cdd:TIGR02169 545 agnRLNNVVVEDDAVAKEaiellkrrkagratflplNKMRDErrdLSILSEDgvigfavdlvefDPKYepafkyvfgdTL 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 768 LSSELEKLRE-----NLTDMEAKFKEK---------DDREDQLVKA--KEKLENDIAEIMKMSGDNSSqltkMNDELRLK 831
Cdd:TIGR02169 625 VVEDIEAARRlmgkyRMVTLEGELFEKsgamtggsrAPRGGILFSRsePAELQRLRERLEGLKRELSS----LQSELRRI 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 832 ERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAA--RKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKA 909
Cdd:TIGR02169 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEelEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 910 SSETKTK-HEEILQNLQKMLADTEDKLKAAQEANRDLMQDMeelktqadkaKSLTYLLTSAKKEIEVMSEELRGLKSEKQ 988
Cdd:TIGR02169 781 LNDLEARlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL----------NRLTLEKEYLEKEIQELQEQRIDLKEQIK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 989 LYAQEANALKLEKGSLLSKLIEVETKITLLQEdqqklwsvnETLHLEKERVSEEKQVAEKryQQEHRDRESLVAEREKLL 1068
Cdd:TIGR02169 851 SIEKEIENLNGKKEELEEELEELEAALRDLES---------RLGDLKKERDELEAQLREL--ERKIEELEAQIEKKRKRL 919
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1069 KEINAAQEELLKmhmENDSLEASKVSMQVLIEELrfckdklmAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQK- 1147
Cdd:TIGR02169 920 SELKAKLEALEE---ELSEIEDPKGEDEEIPEEE--------LSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRl 988
|
890 900 910
....*....|....*....|....*....|.
gi 568937390 1148 --LQSAYEELVKDQKALVQEIEDLTTEKKSA 1176
Cdd:TIGR02169 989 deLKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
955-1179 |
4.91e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 4.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 955 QADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHL 1034
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1035 EKERVSEE-KQVAEKRYQQEHRDRESLV---------AEREKLLKEINAAQEELLkmhmenDSLEASKVSMQVLIEELRF 1104
Cdd:COG4942 98 ELEAQKEElAELLRALYRLGRQPPLALLlspedfldaVRRLQYLKYLAPARREQA------EELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 1105 CKDKLMAMSEKARAEKEHLEgqvkKLTAENLVLVKDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEK 1179
Cdd:COG4942 172 ERAELEALLAELEEERAALE----ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
871-1519 |
5.41e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 5.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 871 ARKHEEEKKEleekllelekkmetsynqcqdLKAKYEKASSETKTKhEEILQNLQKMLADTEDKLKAAQEANRDLMQDME 950
Cdd:TIGR04523 28 ANKQDTEEKQ---------------------LEKKLKTIKNELKNK-EKELKNLDKNLNKDEEKINNSNNKIKILEQQIK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 951 EL----KTQADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLW 1026
Cdd:TIGR04523 86 DLndklKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLK 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1027 SVNETLHLEKERVSEEKQVAEKRYQQ---EHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLI---- 1099
Cdd:TIGR04523 166 KQKEELENELNLLEKEKLNIQKNIDKiknKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEInekt 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1100 EELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENlVLVKDKDDVIQKLQSAYEEL-----------VKDQKALVQE-IE 1167
Cdd:TIGR04523 246 TEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNN-KKIKELEKQLNQLKSEISDLnnqkeqdwnkeLKSELKNQEKkLE 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1168 DLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCAS 1247
Cdd:TIGR04523 325 EIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1248 KALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQLLHEK-------ESLAASERTLLAEKEELLSENRIITEKL 1320
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDsvkeliiKNLDNTRESLETQLKVLSRSINKIKQNL 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1321 SKQSEEVARLEMGLNEkityLTSEKEVACQKVAKLKKQQDSLLKEKSALELQngdlLADRESSIKTIGDLRRKYDQEATn 1400
Cdd:TIGR04523 485 EQKQKELKSKEKELKK----LNEEKKELEEKVKDLTKKISSLKEKIEKLESE----KKEKESKISDLEDELNKDDFELK- 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1401 rrivmqeKMKLLGNIDALKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCCCEKNM 1480
Cdd:TIGR04523 556 -------KENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628
|
650 660 670
....*....|....*....|....*....|....*....
gi 568937390 1481 LLRDGLNLQEECQKLNEEIREIQQTLileKEARAKESET 1519
Cdd:TIGR04523 629 LSSIIKNIKSKKNKLKQEVKQIKETI---KEIRNKWPEI 664
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1299-2004 |
5.44e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 5.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1299 ERTLLAEKEELLSENRIITEKLSKQSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLA 1378
Cdd:pfam02463 172 KEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1379 DRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHT 1458
Cdd:pfam02463 252 EIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1459 SMIQAKDNLNAELKTccCEKNMLLRDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSLYENNKLhgrvvLLEEEI 1538
Cdd:pfam02463 332 KEKEEIEELEKELKE--LEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE-----LKSEEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1539 QRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKS---------KLELQELHS 1609
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELElkksedllkETQLVKLQE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1610 CLTKILDDLRLNHEVALTERAE--------------------------------------------VLQDNKNLLAEKRE 1645
Cdd:pfam02463 485 QLELLLSRQKLEERSQKESKARsglkvllalikdgvggriisahgrlgdlgvavenykvaistaviVEVSATADEVEERQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1646 MMLRNEEALKEKEKLEESYFILQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAM 1725
Cdd:pfam02463 565 KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1726 QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQL 1805
Cdd:pfam02463 645 ESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLA 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1806 SALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASLQKSISLTSALLTEK 1885
Cdd:pfam02463 725 DRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELR 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1886 DAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMI 1965
Cdd:pfam02463 805 ALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKL 884
|
730 740 750
....*....|....*....|....*....|....*....
gi 568937390 1966 DFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSY 2004
Cdd:pfam02463 885 KDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERI 923
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
351-948 |
5.52e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 5.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 351 ALQEALKEKQQHIEqllAERDLERAEVAKATSHVGEIEQELALAR---DGHDQHVLELEAKMDQLRTMVEAADREKVELL 427
Cdd:COG4913 253 LLEPIRELAERYAA---ARERLAELEYLRAALRLWFAQRRLELLEaelEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 428 NQLEEEK-RKVEDLqfrveeesitkgdlevatvseKSRIMELEKDLALRAQEVAELRRRLES--SKPPGDVDMSLSLLQE 504
Cdd:COG4913 330 AQIRGNGgDRLEQL---------------------EREIERLERELEERERRRARLEALLAAlgLPLPASAEEFAALRAE 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 505 ISALQEKLEAIHTDHQGEMTSLKehfgAREEAFQKEIKAlhtatekLSKENESLRSkldhaNKEN--SDVIALwKSKLET 582
Cdd:COG4913 389 AAALLEALEEELEALEEALAEAE----AALRDLRRELRE-------LEAEIASLER-----RKSNipARLLAL-RDALAE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 583 AIASHQQAM----EELKVSFSKGIGTDSAE----------------FAELKTQIERL----RLDYQHEIESLQSKQDSER 638
Cdd:COG4913 452 ALGLDEAELpfvgELIEVRPEEERWRGAIErvlggfaltllvppehYAAALRWVNRLhlrgRLVYERVRTGLPDPERPRL 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 639 SAHakemeTMQAKLmkIIKEKEdSLEAVKARLDSAEDQHLVEMEDTLNKLQEA-----EIKANSITKELQEKELVLTGLQ 713
Cdd:COG4913 532 DPD-----SLAGKL--DFKPHP-FRAWLEAELGRRFDYVCVDSPEELRRHPRAitragQVKGNGTRHEKDDRRRIRSRYV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 714 dsLNQVNQVK-ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHqkeeqfnvLSSELEKLRENLTDMEAKFKEKDDR 792
Cdd:COG4913 604 --LGFDNRAKlAALEAELAELEEELAEAEERLEALEAELDALQERRE--------ALQRLAEYSWDEIDVASAEREIAEL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 793 EDQLvkakEKLENDiaeimkmsgdnSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEvtlkAEQSQQQAAR 872
Cdd:COG4913 674 EAEL----ERLDAS-----------SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ----AEEELDELQD 734
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568937390 873 KHEEEKKELEEKLLelekkmetsynqcQDLKAKYEKASSETKTKheEILQNLQKMLADTEDKLKAAQEANRDLMQD 948
Cdd:COG4913 735 RLEAAEDLARLELR-------------ALLEERFAAALGDAVER--ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
404-1460 |
7.07e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.33 E-value: 7.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELR 483
Cdd:pfam01576 72 ELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLS 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 484 RrlESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLkehfgarEEAFQKEikalhtatEKLSKENESLRSKLD 563
Cdd:pfam01576 152 K--ERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDL-------EERLKKE--------EKGRQELEKAKRKLE 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 564 HANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKgigtdSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAK 643
Cdd:pfam01576 215 GESTDLQEQIAELQAQIAELRAQLAKKEEELQAALAR-----LEEETAQKNNALKKIRELEAQISELQEDLESERAARNK 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 644 EMET---MQAKLMKIIKEKEDSLE--AVKARLDSAEDQHLVEMEDTLNklQEAEIKANSITKELQEKELVLTGLQDSLNQ 718
Cdd:pfam01576 290 AEKQrrdLGEELEALKTELEDTLDttAAQQELRSKREQEVTELKKALE--EETRSHEAQLQEMRQKHTQALEELTEQLEQ 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 719 VNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvlsseLEKLRENLTDMEakfKEKDDREDQLVK 798
Cdd:pfam01576 368 AKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQ-------LQELQARLSESE---RQRAELAEKLSK 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 799 AKEKLENdIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGE--VTLKAEQSQQQAARKhee 876
Cdd:pfam01576 438 LQSELES-VSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDerNSLQEQLEEEEEAKR--- 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 877 ekkeleekllELEKKMETSYNQCQDLKAKYEKASS------ETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDME 950
Cdd:pfam01576 514 ----------NVERQLSTLQAQLSDMKKKLEEDAGtlealeEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELD 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 951 ELKTQADKAKSLTYLLTSAKKEIEVMSEELRGL---------KSEKQLYAQEANALKLEKG--SLLSKLIEVETKITLLQ 1019
Cdd:pfam01576 584 DLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAIsaryaeerdRAEAEAREKETRALSLARAleEALEAKEELERTNKQLR 663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1020 EDQQKLWS----VNETLH-LEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEIN----AAQEElLKMHMENDSLEA 1090
Cdd:pfam01576 664 AEMEDLVSskddVGKNVHeLERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNmqalKAQFE-RDLQARDEQGEE 742
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1091 SKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQ---KLQSAYEELVKDQKALVQEIE 1167
Cdd:pfam01576 743 KRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKqlkKLQAQMKDLQRELEEARASRD 822
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1168 DLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLrqgQEKLSASLEAtlqvKQLLSTEAETLRTQLDCAS 1247
Cdd:pfam01576 823 EILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDEL---ADEIASGASG----KSALQDEKRRLEARIAQLE 895
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1248 KALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERTLLAEKEELLSENRiiteklSKQSEEV 1327
Cdd:pfam01576 896 EELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGTVK------SKFKSSI 969
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1328 ARLEmglnekityltsekevacQKVAKLKKQQDSLLKEKSAlelqNGDLLADRESSIKtigDLRRKYDQEATNRRIVMQE 1407
Cdd:pfam01576 970 AALE------------------AKIAQLEEQLEQESRERQA----ANKLVRRTEKKLK---EVLLQVEDERRHADQYKDQ 1024
|
1050 1060 1070 1080 1090
....*....|....*....|....*....|....*....|....*....|...
gi 568937390 1408 KMKLLGNIDALKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSM 1460
Cdd:pfam01576 1025 AEKGNSRMKQLKRQLEEAEEEASRANAARRKLQRELDDATESNESMNREVSTL 1077
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1414-1939 |
7.25e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 51.44 E-value: 7.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1414 NIDALKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCcceknmllrdgLNLQEECQ 1493
Cdd:PRK01156 184 NIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL-----------SSLEDMKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1494 KLNEEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLqtENFTLTQEKTNSE-QKVEEIIKE 1572
Cdd:PRK01156 253 RYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDI--ENKKQILSNIDAEiNKYHAIIKK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1573 KELLSAETAQLaaniETLKSDFAALSKSKLELQELHS----------CLTKILDDLRLNHEVALTERAEVLqdnKNLLAE 1642
Cdd:PRK01156 331 LSVLQKDYNDY----IKKKSRYDDLNNQILELEGYEMdynsylksieSLKKKIEEYSKNIERMSAFISEIL---KIQEID 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1643 KREMMLRNEEALKEKEKLEESYFILQKEISQLAQTNSHIS--ANLLESQS------------ENRTLRK----DKSKLTL 1704
Cdd:PRK01156 404 PDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSrnMEMLNGQSvcpvcgttlgeeKSNHIINhyneKKSRLEE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1705 KIRELETLHSfTAAQTAEDAMQIMEQMTKEKTETLAS----LEDTKQTNARLQNELDTLKENNLKTVEELNKSKEL-LSV 1779
Cdd:PRK01156 484 KIREIEIEVK-DIDEKIVDLKKRKEYLESEEINKSINeynkIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLkLED 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1780 ENQKMEEFKK--------EIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSH-QKLEEERSVLNNQ--LLEMKK 1848
Cdd:PRK01156 563 LDSKRTSWLNalavisliDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSiREIENEANNLNNKynEIQENK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1849 SLPSNTLRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEvtvLRGENATAKSLHSVVQTLESDKVKLELKVK 1928
Cdd:PRK01156 643 ILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKA---LDDAKANRARLESTIEILRTRINELSDRIN 719
|
570
....*....|.
gi 568937390 1929 NLELQLKENKR 1939
Cdd:PRK01156 720 DINETLESMKK 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
712-963 |
9.77e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 9.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 712 LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDD 791
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 792 REDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMndeLRLKERSVEELQLKLTKanenasfLQKSIGEVTLKAEQSQQQAA 871
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLLSPEDFLDAVRR---LQYLKYLAPARREQAEE-------LRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 872 RKheeekkeleekllelekkmETSYNQCQDLKAKYEKAssetKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEE 951
Cdd:COG4942 175 EL-------------------EALLAELEEERAALEAL----KAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
250
....*....|..
gi 568937390 952 LKTQADKAKSLT 963
Cdd:COG4942 232 LEAEAAAAAERT 243
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
686-1276 |
1.09e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 686 NKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKekfastseeavsaqTRMQDTVNKLHQKEEQF 765
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILE--------------QQIKDLNDKLKKNKDKI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 766 NVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKA 845
Cdd:TIGR04523 99 NKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 846 NENASFLQKSIGEVTLKAEQSQQ-----QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEI 920
Cdd:TIGR04523 179 EKEKLNIQKNIDKIKNKLLKLELllsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 921 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKT------------QADKAKSLTYLLTSAKKEIEVMSEELRG------ 982
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQlkseisdlnnqkEQDWNKELKSELKNQEKKLEEIQNQISQnnkiis 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 983 -LKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEEKQVAEKRYQQEHRDRESLV 1061
Cdd:TIGR04523 339 qLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1062 AEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKD----KLMAMSEKARAEKEHLEGQVKKLTAENLVL 1137
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTREsletQLKVLSRSINKIKQNLEQKQKELKSKEKEL 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1138 VKDKDDVIQkLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAE--RENLLQTNRDLQFEKDTLRQGQ 1215
Cdd:TIGR04523 499 KKLNEEKKE-LEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFElkKENLEKEIDEKNKEIEELKQTQ 577
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 1216 EKLSASLEATLQVKQLLSTE--------------AETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIKT 1276
Cdd:TIGR04523 578 KSLKKKQEEKQELIDQKEKEkkdlikeieekekkISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKE 652
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1614-1954 |
1.61e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1614 ILDDLRLNHEVALTERAEVLQdNKNLLAEKREmmLRNEEALKEKEKLEESYFILQKEISQLAQTNSHISANLLESQSENR 1693
Cdd:TIGR02169 192 IIDEKRQQLERLRREREKAER-YQALLKEKRE--YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1694 TLRKDKSKLTLKIRELetlhsftaaqTAEDAMQIMEQMTkektETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKS 1773
Cdd:TIGR02169 269 EIEQLLEELNKKIKDL----------GEEEQLRVKEKIG----ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1774 KELLSVENQKMEEFKKEIETLKQAAAQKSQQLSAL----QEENVKLAEELGRTRDEVTSHQKLEEERsvlnNQLLEMKKS 1849
Cdd:TIGR02169 335 LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLraelEEVDKEFAETRDELKDYREKLEKLKREI----NELKRELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1850 LPSNTLRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKN 1929
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE-EYDRVEKELSKLQ 489
|
330 340
....*....|....*....|....*
gi 568937390 1930 LELQLKENKRQLSSSSGNTDAQAEE 1954
Cdd:TIGR02169 490 RELAEAEAQARASEERVRGGRAVEE 514
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1748-1972 |
1.74e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 50.30 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1748 TNARLQNELDTLKENNLKTVEE------LNKSKELLsvenQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELG- 1820
Cdd:PRK11281 37 TEADVQAQLDALNKQKLLEAEDklvqqdLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDe 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1821 --RTRDEVTSHQKLEEERSVLNNQLLEMKKSLpsntlresefrKDADEEKASLQKSISLTSALLTEKDAELEKLRNEvtv 1898
Cdd:PRK11281 113 etRETLSTLSLRQLESRLAQTLDQLQNAQNDL-----------AEYNSQLVSLQTQPERAQAALYANSQRLQQIRNL--- 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 1899 LRGENATAKSLHSvvqtleSDKVKLELKVKNLELQLKENKRQLSSSSGNTD-AQAEED---ERAQESQQMIDFLNSVI 1972
Cdd:PRK11281 179 LKGGKVGGKALRP------SQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDlLQKQRDyltARIQRLEHQLQLLQEAI 250
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
823-1470 |
1.86e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 823 KMNDELRLKE-RSVEELQLK---LTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKME----- 893
Cdd:PTZ00121 1219 KAEDAKKAEAvKKAEEAKKDaeeAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADeakka 1298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 894 TSYNQCQDLKAKYEKA--SSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKK 971
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAkkADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 972 EIEVMSEelrglKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEEKQVAEKRYQ 1051
Cdd:PTZ00121 1379 KADAAKK-----KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA 1453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1052 QEHRDRESLV--AEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVL--IEELRFCKDKLMAMSEKARAEKEHLEGQV 1127
Cdd:PTZ00121 1454 EEAKKAEEAKkkAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAkkAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1128 KKLTAENLVLVKDKDDVIQKLqsayEELVKdqkalVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFE 1207
Cdd:PTZ00121 1534 KKADEAKKAEEKKKADELKKA----EELKK-----AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1208 KdtlRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQ 1287
Cdd:PTZ00121 1605 K---KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1288 LLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDsllKEKS 1367
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE---EKKK 1758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1368 ALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKllgNIDALKKELQERKKENQE-LTSSKCDLSLLLKEA 1446
Cdd:PTZ00121 1759 IAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK---DIFDNFANIIEGGKEGNLvINDSKEMEDSAIKEV 1835
|
650 660
....*....|....*....|....
gi 568937390 1447 QDAKKNLEKEHTSMIQAKDNLNAE 1470
Cdd:PTZ00121 1836 ADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
355-528 |
2.42e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 49.47 E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 355 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAAD 420
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 421 REKVELLNQLEEEKRKVEDLQFRVEEESitkgdlevatvSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdmsls 500
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEAR-----------SEERREIRKDREISRLDREIERLERELEEER---------- 485
|
170 180 190
....*....|....*....|....*....|..
gi 568937390 501 llQEISALQEKLE----AIHTDHQGEMTSLKE 528
Cdd:COG2433 486 --ERIEELKRKLErlkeLWKLEHSGELVPVKV 515
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1628-1821 |
2.70e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1628 ERAEVLQDNKNLLAEKREMMLRNEEALKEKEKLEESYFILQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIR 1707
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1708 E-------------LETLHSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSK 1774
Cdd:COG4942 108 EllralyrlgrqppLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568937390 1775 ELLSvenQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGR 1821
Cdd:COG4942 188 AALE---ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-568 |
2.82e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 431 EEEKRKVEDL---QFRVEEESITKGDLEVATVSEKSRIMELEKDLA-LRAQEVAELRRRLESSKppgdvdmslSLLQEIS 506
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLApARREQAEELRADLAELA---------ALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 507 ALQEKLEAIHTDHQGEMTSLKEHFGAREEA---FQKEIKALHTATEKLSKENESLRSKLDHANKE 568
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLlarLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
610-871 |
3.56e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 49.14 E-value: 3.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 610 AELKTQIERLRLDYQHEIESLQSKQDsersahakeMETMQAKLMKIIKEKEDsLEAVKARLDSAeDQHLVEMEDTLNKLQ 689
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQD---------LEQTLALLDKIDRQKEE-TEQLKQQLAQA-PAKLRQAQAELEALK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 690 EaeiKANSITKELQEKeLVLTGLQDSLNQVNQvketlekELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLS 769
Cdd:PRK11281 108 D---DNDEETRETLST-LSLRQLESRLAQTLD-------QLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 770 SELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimKMSGDNSSQLTkmndELRLKERsvEELQLKLTKANENA 849
Cdd:PRK11281 177 NLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQ-------RKSLEGNTQLQ----DLLQKQR--DYLTARIQRLEHQL 243
|
250 260
....*....|....*....|..
gi 568937390 850 SFLQKSIGEVTLkaEQSQQQAA 871
Cdd:PRK11281 244 QLLQEAINSKRL--TLSEKTVQ 263
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
882-1558 |
3.71e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.20 E-value: 3.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 882 EEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKH-EEILQNLQKMLADTEDKLKAAQEANRdLMQDMEELKTQADKAK 960
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHlREALQQTQQSHAYLTQKREAQEEQLK-KQQLLKQLRARIEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 961 SLTYLLTSAKKEIEVMSEELRGLKSEKQLY-----AQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLE 1035
Cdd:TIGR00618 274 AQEAVLEETQERINRARKAAPLAAHIKAVTqieqqAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQ 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1036 KERVSEEKQVAEKRyqQEHRDRESLVAEREKLLKEINAAQEELLK-MHMENDSLEASKVSMQVLIEELRFCKDKLMAMSE 1114
Cdd:TIGR00618 354 EIHIRDAHEVATSI--REISCQQHTLTQHIHTLQQQKTTLTQKLQsLCKELDILQREQATIDTRTSAFRDLQGQLAHAKK 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1115 KARAEKEHLEgQVKKLTAENLVLVKDKDDVIQKLQSAYEELvKDQKALVQEIEDLTTEKKS--AAEKQMSLDNTCLTLKA 1192
Cdd:TIGR00618 432 QQELQQRYAE-LCAAAITCTAQCEKLEKIHLQESAQSLKER-EQQLQTKEQIHLQETRKKAvvLARLLELQEEPCPLCGS 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1193 ERENLLQTNRDLQFEKDTLRqgqeklsasLEATLQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLE 1272
Cdd:TIGR00618 510 CIHPNPARQDIDNPGPLTRR---------MQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDN 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1273 EIKTCRAITDSECIQLLHEKESLAASERTLLAEKEELLSENRIITEKLSKQ------SEEVARLEMGLNEKITYLTSEKE 1346
Cdd:TIGR00618 581 RSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRlhlqqcSQELALKLTALHALQLTLTQERV 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1347 ---VACQKVAKLKKQQDSLLKEKsALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLLGNIDALKkelQ 1423
Cdd:TIGR00618 661 rehALSIRVLPKELLASRQLALQ-KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLA---A 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1424 ERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQ 1503
Cdd:TIGR00618 737 REDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDE 816
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 1504 QTLILEKEARAKESE---TSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQE 1558
Cdd:TIGR00618 817 DILNLQCETLVQEEEqflSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQL 874
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1491-1993 |
5.35e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 5.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1491 ECQKLNEEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQ--KVEE 1568
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEakKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1569 IIKEKELlsAETAQLAANIETLKSDfAALSKSKLELQELHSCLTKILDDLRLNHEVALTERAEVLQDNKNLLAEKREMML 1648
Cdd:PTZ00121 1301 KKKADEA--KKKAEEAKKADEAKKK-AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1649 RNEEALKEKEKLEESYFILQKEISQLAQTNSHI---------SANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQ 1719
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELkkaaaakkkADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1720 TAEDAMQIMEQM-----TKEKTETLASLEDTKQTNARLQNELDTLKE--------NNLKTVEELNKSKELLSVEN-QKME 1785
Cdd:PTZ00121 1458 KAEEAKKKAEEAkkadeAKKKAEEAKKADEAKKKAEEAKKKADEAKKaaeakkkaDEAKKAEEAKKADEAKKAEEaKKAD 1537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1786 EFKKEIETLKQAAAQKSQQLSalQEENVKLAEELGRT-RDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDA 1864
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELK--KAEEKKKAEEAKKAeEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1865 DEEKAslqKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSS 1944
Cdd:PTZ00121 1616 EEAKI---KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 568937390 1945 SgnTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAA 1993
Cdd:PTZ00121 1693 A--LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA 1739
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
623-1930 |
6.14e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.51 E-value: 6.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 623 YQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKAnsitkel 702
Cdd:TIGR01612 472 FEEEWGSYDIKKDIDENSKQDNTVKLILMRMKDFKDIIDFMELYKPDEVPSKNIIGFDIDQNIKAKLYKEIEA------- 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 703 qekelvltGLQDSLNQVNQVKETLEKelqtLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQ---FNVLSSELEKLRENL 779
Cdd:TIGR01612 545 --------GLKESYELAKNWKKLIHE----IKKELEEENEDSIHLEKEIKDLFDKYLEIDDEiiyINKLKLELKEKIKNI 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 780 TDmeakfkeKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTkmnDELRLKERSVEELQLKLTKANENAsfLQKSIGEV 859
Cdd:TIGR01612 613 SD-------KNEYIKKAIDLKKIIENNNAYIDELAKISPYQVP---EHLKNKDKIYSTIKSELSKIYEDD--IDALYNEL 680
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 860 TlkaeqsqqQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKakyekasSETKTKHEEILQNLQKMLADT--EDKLKA 937
Cdd:TIGR01612 681 S--------SIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNME-------TATVELHLSNIENKKNELLDIivEIKKHI 745
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 938 AQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITL 1017
Cdd:TIGR01612 746 HGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISI 825
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1018 LQEDQQKLwsVNETLHLEKERVSEekqvAEKRYQQEHRDRESLVAEREKLLKEINAAQEELlkmhmENDSLEaskvsmqv 1097
Cdd:TIGR01612 826 KEDEIFKI--INEMKFMKDDFLNK----VDKFINFENNCKEKIDSEHEQFAELTNKIKAEI-----SDDKLN-------- 886
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1098 lIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAA 1177
Cdd:TIGR01612 887 -DYEKKFNDSKSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYK 965
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1178 EKqmsLDNTCLTLKAERENLlqtnrdlqFEKDTLRQGQEKLSASLEATLQVKQLLSTEAE-TLRTQLDCASKALRKAELD 1256
Cdd:TIGR01612 966 DK---FDNTLIDKINELDKA--------FKDASLNDYEAKNNELIKYFNDLKANLGKNKEnMLYHQFDEKEKATNDIEQK 1034
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1257 MRQLQTS--------NSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVA 1328
Cdd:TIGR01612 1035 IEDANKNipnieiaiHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIKEKLKHYNFDDFGKEENIKYADEIN 1114
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1329 RLEmglnEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSAlELQNGDLLADRESSIKTIGDLRRKYDQEAT---NRRIVM 1405
Cdd:TIGR01612 1115 KIK----DDIKNLDQKIDHHIKALEEIKKKSENYIDEIKA-QINDLEDVADKAISNDDPEEIEKKIENIVTkidKKKNIY 1189
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1406 QEKMKLLGNIDALKKELQERKK-ENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNaELKTCCCEKNMLLRD 1484
Cdd:TIGR01612 1190 DEIKKLLNEIAEIEKDKTSLEEvKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLD-EIKEKSPEIENEMGI 1268
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1485 GLNLQEECQKLNEEIREIQQTLILEKE-----ARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEK 1559
Cdd:TIGR01612 1269 EMDIKAEMETFNISHDDDKDHHIISKKhdeniSDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEI 1348
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1560 TN-----SEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKI---LDDLRLNHEValterAE 1631
Cdd:TIGR01612 1349 ANiynilKLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINLEECKSKIestLDDKDIDECI-----KK 1423
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1632 VLQDNKNLLAEKREmmlrNEEALKEKEKLEESYFILQKEISQLAQTNSHIsanlLESQSENRTLRKDKSKLTLKIRELET 1711
Cdd:TIGR01612 1424 IKELKNHILSEESN----IDTYFKNADENNENVLLLFKNIEMADNKSQHI----LKIKKDNATNDHDFNINELKEHIDKS 1495
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1712 LHSFTAA----QTAEDAMQIMEQMTKEKTETLasledTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE----NQK 1783
Cdd:TIGR01612 1496 KGCKDEAdknaKAIEKNKELFEQYKKDVTELL-----NKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEaeksEQK 1570
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1784 MEEFKKEIETLKQAAAQKSQ--------QLSALQEEN--VKLAEELGRTRDEVTSHQKLEEERSVL--NNQLLEMKKSLP 1851
Cdd:TIGR01612 1571 IKEIKKEKFRIEDDAAKNDKsnkaaidiQLSLENFENkfLKISDIKKKINDCLKETESIEKKISSFsiDSQDTELKENGD 1650
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1852 S-NTLResEFRKDADEEKaslqKSISLTSALLTEKDAELEKLRN---------EVTVLRGENATAKSLHsvvQTLESDKV 1921
Cdd:TIGR01612 1651 NlNSLQ--EFLESLKDQK----KNIEDKKKELDELDSEIEKIEIdvdqhkknyEIGIIEKIKEIAIANK---EEIESIKE 1721
|
....*....
gi 568937390 1922 KLELKVKNL 1930
Cdd:TIGR01612 1722 LIEPTIENL 1730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
535-751 |
7.27e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 7.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 535 EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKsKLETAIASHQQAMEELKvsfskgigtdsAEFAELKT 614
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELAELE-----------KEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 615 QIERLRLDYQHEIESLQ--SKQD-------SERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTL 685
Cdd:COG4942 98 ELEAQKEELAELLRALYrlGRQPplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568937390 686 NKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRM 751
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
335-594 |
7.30e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 7.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRT 414
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDD-LAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 415 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLEsskppgd 494
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLE------- 772
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 495 vdmslsllQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSK-ENESL---RSKLDHANKENS 570
Cdd:COG4913 773 --------ERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRlEEDGLpeyEERFKELLNENS 844
|
250 260
....*....|....*....|....*
gi 568937390 571 DV-IALWKSKLETAIASHQQAMEEL 594
Cdd:COG4913 845 IEfVADLLSKLRRAIREIKERIDPL 869
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
538-1141 |
8.93e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.79 E-value: 8.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 538 QKEIKALHTATEKLSKENESLRSKLDHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSFSKG 601
Cdd:pfam05483 112 RKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDLNNN 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 602 IGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEM---ETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHL 678
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEIndkEKQVSLLLIQITEKENKMKDLTFLLEESRDKAN 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 679 VEMEDTL---NKLQEAEIKANSITKELQEKELVLT-----------GLQDSLNQVNQVKETLEKELQTLKEKFASTS--- 741
Cdd:pfam05483 272 QLEEKTKlqdENLKELIEKKDHLTKELEDIKMSLQrsmstqkaleeDLQIATKTICQLTEEKEAQMEELNKAKAAHSfvv 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 742 ----EEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMeAKFKEKDDREDQLVKA----KEKLENDIAEIMKM 813
Cdd:pfam05483 352 tefeATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEM-TKFKNNKEVELEELKKilaeDEKLLDEKKQFEKI 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 814 SGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQqaarKHEEEKKELEEKLLELEKKME 893
Cdd:pfam05483 431 AEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKL----KNIELTAHCDKLLLENKELTQ 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 894 TSYNQCQDLKaKYEKASSETKTKHEEILQNLQKmLADTEDKLKAAQEANR-DLMQDMEELKTQADK----AKSLTYLLTS 968
Cdd:pfam05483 507 EASDMTLELK-KHQEDIINCKKQEERMLKQIEN-LEEKEMNLRDELESVReEFIQKGDEVKCKLDKseenARSIEYEVLK 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 969 AKKEIEVMSEELRGLKSEK-------QLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSE 1041
Cdd:pfam05483 585 KEKQMKILENKCNNLKKQIenknkniEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIE 664
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1042 EKQVAEKRYQQEHRDRESLVAEREKLLKEIN-------AAQEELLKMHMEN---------------DSLEASKVSMQVLI 1099
Cdd:pfam05483 665 DKKISEEKLLEEVEKAKAIADEAVKLQKEIDkrcqhkiAEMVALMEKHKHQydkiieerdselglyKNKEQEQSSAKAAL 744
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 568937390 1100 E-ELRFCKDKLMAMSEKARAEKEHLEgQVKKLTAENLVLVKDK 1141
Cdd:pfam05483 745 EiELSNIKAELLSLKKQLEIEKEEKE-KLKMEAKENTAILKDK 786
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1035-1254 |
1.04e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1035 EKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRfckdklmamsE 1114
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR----------A 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1115 KARAEKEHLEGQVKKL----TAENLVLVKDKDDVIQKLQSA--YEELVKDQKalvQEIEDLTTEKKSAAEKQMSLDNTCL 1188
Cdd:COG4942 98 ELEAQKEELAELLRALyrlgRQPPLALLLSPEDFLDAVRRLqyLKYLAPARR---EQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568937390 1189 TLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCASKALRKAE 1254
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1642-1901 |
1.11e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1642 EKREMMLRNEEALKEKEKLEESYFILQKEISQLAQtnshisanLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTA 1721
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALEDAREQIEL--------LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1722 EDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnnlktveelnkskELLSVENQKMEEFKKEIETLKQAAAQK 1801
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEA-------------QIRGNGGDRLEQLEREIERLERELEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1802 SQQLSALQEenvkLAEELGrtrdevtshQKLEEERSVLNNQLLEMKkslpsntlresEFRKDADEEKASLQKSISLTSAL 1881
Cdd:COG4913 358 ERRRARLEA----LLAALG---------LPLPASAEEFAALRAEAA-----------ALLEALEEELEALEEALAEAEAA 413
|
250 260
....*....|....*....|
gi 568937390 1882 LTEKDAELEKLRNEVTVLRG 1901
Cdd:COG4913 414 LRDLRRELRELEAEIASLER 433
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1487-1893 |
1.29e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.81 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1487 NLQEECQKlneEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKV 1566
Cdd:pfam07888 34 NRLEECLQ---ERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1567 EEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQelhscltkilddlrlnhevalTERAEVLQDNKNLLAEKREm 1646
Cdd:pfam07888 111 EELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERE---------------------TELERMKERAKKAGAQRKE- 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1647 mlrnEEAlkEKEKLEESYFILQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKireLETLHSFTAAqtaedamq 1726
Cdd:pfam07888 169 ----EEA--ERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQK---LTTAHRKEAE-------- 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1727 iMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSK-ELLSVENQKMEEFKKeietLKQAAAQKSQQL 1805
Cdd:pfam07888 232 -NEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARlQAAQLTLQLADASLA----LREGRARWAQER 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1806 SALQEENVKLAEELGRTRDEVTSHQK-LEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASLQKSISLTSALLTE 1884
Cdd:pfam07888 307 ETLQQSAEADKDRIEKLSAELQRLEErLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAE 386
|
....*....
gi 568937390 1885 KDAELEKLR 1893
Cdd:pfam07888 387 KQELLEYIR 395
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
534-807 |
1.38e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 46.94 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 534 EEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEfaELK 613
Cdd:pfam05667 253 AEQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSPPTKVETEE--ELQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 614 TQIERLRLDYQHEIESLQSKQDsersAHAKEMETMQAKlmkiIKEKEDSLEAVKARLDSAEDQHLVeMEDTLNKLQEAE- 692
Cdd:pfam05667 331 QQREEELEELQEQLEDLESSIQ----ELEKEIKKLESS----IKQVEEELEELKEQNEELEKQYKV-KKKTLDLLPDAEe 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 693 --IKANSITKELQEKELVLTGlqdslnQVNQVKETLEKELQTLKEKfastseeavsAQTRMQDTVNKLhqkeeqfnvlsS 770
Cdd:pfam05667 402 niAKLQALVDASAQRLVELAG------QWEKHRVPLIEEYRALKEA----------KSNKEDESQRKL-----------E 454
|
250 260 270
....*....|....*....|....*....|....*..
gi 568937390 771 ELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDI 807
Cdd:pfam05667 455 EIKELREKIKEVAEEAKQKEELYKQLVAEYERLPKDV 491
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1535-1902 |
1.41e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1535 EEEIQRLRVCSEQLQTENFTLTQEKtnsEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKI 1614
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRRER---EKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1615 LDDLRLNHEVALTERAEVlqdnknllaEKREMMLRNEEALKEKEKLEESYfilqkeiSQLAQTNSHISANLLESQSENRT 1694
Cdd:TIGR02169 260 ISELEKRLEEIEQLLEEL---------NKKIKDLGEEEQLRVKEKIGELE-------AEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1695 LRKDKSKLTLKIRELETLHsftaaqtaedamQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSK 1774
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELE------------REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1775 EllsvenqKMEEFKKEIETLKQaaaqksqQLSALQEENVKLAEELGRTRDEVTS----HQKLEEERSVLNNQLLEMKKSL 1850
Cdd:TIGR02169 392 E-------KLEKLKREINELKR-------ELDRLQEELQRLSEELADLNAAIAGieakINELEEEKEDKALEIKKQEWKL 457
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 568937390 1851 PSNtlreSEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1902
Cdd:TIGR02169 458 EQL----AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
649-812 |
1.64e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 649 QAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEM-EDTLNKLQEAEIKANSITKELQEKElvltglqdslNQVNQVKETLE 727
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAkEEIHKLRNEFEKELRERRNELQKLE----------KRLLQKEENLD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 728 KELQTLKEKfastseeavsaQTRMQDTVNKLHQKEEQFNVLSSELEKLRE----------NLTDMEAKfkekddrEDQLV 797
Cdd:PRK12704 100 RKLELLEKR-----------EEELEKKEKELEQKQQELEKKEEELEELIEeqlqelerisGLTAEEAK-------EILLE 161
|
170
....*....|....*
gi 568937390 798 KAKEKLENDIAEIMK 812
Cdd:PRK12704 162 KVEEEARHEAAVLIK 176
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1651-1834 |
1.65e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1651 EEALKEKEKLEESYFILQKEISQLAQtnshisanllesqsENRTLRKDKSKLTLKIRELETLHsftAAQTAEDAMQIMEQ 1730
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEE--------------ELEELEAELEELREELEKLEKLL---QLLPLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1731 MTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQK-MEEFKKEIETLKQAAAQKSQQLSALQ 1809
Cdd:COG4717 140 ELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEeLQDLAEELEELQQRLAELEEELEEAQ 219
|
170 180
....*....|....*....|....*
gi 568937390 1810 EENVKLAEELGRTRDEVTSHQKLEE 1834
Cdd:COG4717 220 EELEELEEELEQLENELEAAALEER 244
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1008-1962 |
1.68e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1008 LIEVETKITLLQEDQQKLWSVNETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDS 1087
Cdd:pfam01576 14 LQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1088 LEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLvkdkDDVIQKLQsayeelvKDQKALVQEIE 1167
Cdd:pfam01576 94 LQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLL----EDQNSKLS-------KERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1168 DLTTEKKSAAEKQMSLDNtcltlkaerenllqtnrdlqfekdtLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCAS 1247
Cdd:pfam01576 163 EFTSNLAEEEEKAKSLSK-------------------------LKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGES 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1248 KALRKAELDMR-QLQTSNSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERTLLAEKEELLSEnRIITEKLSKQ--- 1323
Cdd:pfam01576 218 TDLQEQIAELQaQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESE-RAARNKAEKQrrd 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1324 -SEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLladRESSIKTIGDLRRKYDQEATNRR 1402
Cdd:pfam01576 297 lGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEM---RQKHTQALEELTEQLEQAKRNKA 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1403 IVMQEKMKLLGNIDALKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCCCEKNMLL 1482
Cdd:pfam01576 374 NLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAE 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1483 RDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTenftLTQEKTNS 1562
Cdd:pfam01576 454 GKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLST----LQAQLSDM 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1563 EQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDL--RLNHEVALTERAEVLQDN-KNL 1639
Cdd:pfam01576 530 KKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLlvDLDHQRQLVSNLEKKQKKfDQM 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1640 LAEKREMMLRN-------------------------EEALKEKEKLEESYFILQKEISQLAQTNSHISANLLESQSENRT 1694
Cdd:pfam01576 610 LAEEKAISARYaeerdraeaeareketralslaralEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRA 689
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1695 LRKDKSKLTLKIRELETlhSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQ-----NELDTLKENNLKTVEE 1769
Cdd:pfam01576 690 LEQQVEEMKTQLEELED--ELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQlvkqvRELEAELEDERKQRAQ 767
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1770 LNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERS-VLNNQLLEMKK 1848
Cdd:pfam01576 768 AVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLkNLEAELLQLQE 847
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1849 SLPSNTLRESEFRKDADEEKASLQKSISLTSALLTEK-------------------DAELEKLRNEVTVLRGENATAK-- 1907
Cdd:pfam01576 848 DLAASERARRQAQQERDELADEIASGASGKSALQDEKrrleariaqleeeleeeqsNTELLNDRLRKSTLQVEQLTTEla 927
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 1908 SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQ 1962
Cdd:pfam01576 928 AERSTSQKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQ 982
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
2018-2035 |
1.80e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 40.14 E-value: 1.80e-04
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1145-1608 |
1.89e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1145 IQKLQSAYEELVKDQ----KALVQEIEDLTTEKKSAAEKQmsldntcltlkAERENLLQTNRDLQFEKDTLRQGQEKLSA 1220
Cdd:COG4717 48 LERLEKEADELFKPQgrkpELNLKELKELEEELKEAEEKE-----------EEYAELQEELEELEEELEELEAELEELRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1221 SLEATLQVKQLLST--EAETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQLLHEKEslaAS 1298
Cdd:COG4717 117 ELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1299 ERTLLAEKEELLSENRIITEKLSKQSEEVARLEmglnEKITYLTSEKEVAcQKVAKLKKQQDSLLKEKSALELQ-NGDLL 1377
Cdd:COG4717 194 LQDLAEELEELQQRLAELEEELEEAQEELEELE----EELEQLENELEAA-ALEERLKEARLLLLIAAALLALLgLGGSL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1378 ADRESSIKTIGDL-------------RRKYDQEATNRRIVMQEKMKLLGNIDaLKKELQERKKENQELTSSKCDLSLLLK 1444
Cdd:COG4717 269 LSLILTIAGVLFLvlgllallflllaREKASLGKEAEELQALPALEELEEEE-LEELLAALGLPPDLSPEELLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1445 EAQDAKKNLEKEHTSM--IQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSLY 1522
Cdd:COG4717 348 ELQELLREAEELEEELqlEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1523 ENnkLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTN--SEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKS 1600
Cdd:COG4717 428 EE--LEEELEELEEELEELEEELEELREELAELEAELEQleEDGELAELLQELEELKAELRELAEEWAALKLALELLEEA 505
|
....*...
gi 568937390 1601 KLELQELH 1608
Cdd:COG4717 506 REEYREER 513
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
622-1037 |
2.04e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.61 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 622 DYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKaRLDSAEDQHLV-----EMEDTLNKLQEAEIKAN 696
Cdd:COG5022 814 SYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKK-RFSLLKKETIYlqsaqRVELAERQLQELKIDVK 892
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 697 SITK------ELQEKELVLT-GLQDSLNQVNQVKETLEKELQTLKEKfaSTSEEAVSAQTRMQDTVNKLHQKEeqfnvls 769
Cdd:COG5022 893 SISSlklvnlELESEIIELKkSLSSDLIENLEFKTELIARLKKLLNN--IDLEEGPSIEYVKLPELNKLHEVE------- 963
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 770 SELEKLRENLTDMeakFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSqLTKMNDELRLKERSVEELQLKLTKANENA 849
Cdd:COG5022 964 SKLKETSEEYEDL---LKKSTILVREGNKANSELKNFKKELAELSKQYGA-LQESTKQLKELPVEVAELQSASKIISSES 1039
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 850 SFL------QKSIGEVTLKAEQSQQQAarKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQN 923
Cdd:COG5022 1040 TELsilkplQKLKGLLLLENNQLQARY--KALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQF 1117
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 924 LQKMLADTeDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYaqEANALKLEKGS 1003
Cdd:COG5022 1118 IVAQMIKL-NLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLY--QSALYDEKSKL 1194
|
410 420 430
....*....|....*....|....*....|....*
gi 568937390 1004 LLSKLIEVETKITLLQEDQQKLWSVN-ETLHLEKE 1037
Cdd:COG5022 1195 SSSEVNDLKNELIALFSKIFSGWPRGdKLKKLISE 1229
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
360-1051 |
2.26e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 360 QQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVED 439
Cdd:TIGR00618 151 QGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKH 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 440 LQFRVEEESITKGDL--EVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISA----LQEKLE 513
Cdd:TIGR00618 231 LREALQQTQQSHAYLtqKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKavtqIEQQAQ 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 514 AIHTDHQGEMTSLKEHFGAREEAFQKE---------IKALHTATEKLSKENESLRSKLDHANKENSDV--IALWKSKLET 582
Cdd:TIGR00618 311 RIHTELQSKMRSRAKLLMKRAAHVKQQssieeqrrlLQTLHSQEIHIRDAHEVATSIREISCQQHTLTqhIHTLQQQKTT 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 583 AIASHQQAMEELKV--SFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQ--DSERSAHAKEMETMQAKLMKIIKE 658
Cdd:TIGR00618 391 LTQKLQSLCKELDIlqREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAaaITCTAQCEKLEKIHLQESAQSLKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 659 KEDSLEAVKARLDSAEDQHLVEmEDTLNKLQEAEIKANSITKELQEKELV----------LTGLQDSLNQVNQVKETLEK 728
Cdd:TIGR00618 471 REQQLQTKEQIHLQETRKKAVV-LARLLELQEEPCPLCGSCIHPNPARQDidnpgpltrrMQRGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 729 ELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLREnLTDMEAKFKEKDDREDQLVKAKEKLENDIA 808
Cdd:TIGR00618 550 QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD-LTEKLSEAEDMLACEQHALLRKLQPEQDLQ 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 809 EImkmsgdnSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ--------KSIGEVTLKAEQSQQQAARKHEEEKKE 880
Cdd:TIGR00618 629 DV-------RLHLQQCSQELALKLTALHALQLTLTQERVREHALSirvlpkelLASRQLALQKMQSEKEQLTYWKEMLAQ 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 881 LEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAK 960
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELS 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 961 SLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKliEVETKITLLQEDQQKLWSVNETLHLEKERVS 1040
Cdd:TIGR00618 782 HLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQ--EEEQFLSRLEEKSATLGEITHQLLKYEECSK 859
|
730
....*....|.
gi 568937390 1041 EEKQVAEKRYQ 1051
Cdd:TIGR00618 860 QLAQLTQEQAK 870
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1480-1910 |
2.57e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1480 MLLRDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEK 1559
Cdd:COG4717 46 MLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1560 TNSE--QKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHEVAL----TERAEVL 1633
Cdd:COG4717 126 QLLPlyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELqdlaEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1634 QDNKNLLAEKREMMLRNEEALKEKEKLEESYFILQ-----KEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRE 1708
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAAleerlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1709 LETLHSFTAAQTAEDAMQIMEQMTKEKTETLASLEdtkqtnarLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFK 1788
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEE--------LEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1789 KEIETLKQAAAQKSQQlSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLpsNTLRESEFRKDADEEK 1868
Cdd:COG4717 358 ELEEELQLEELEQEIA-ALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGEL--EELLEALDEEELEEEL 434
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 568937390 1869 ASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLH 1910
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQ 476
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
402-1169 |
2.63e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.37 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 402 VLELEAKMDQLRTMVEA--ADREKVELLNQLEEEK--RKVEDLQF------------RVEEESITKGDLEVATVSEKSRI 465
Cdd:pfam12128 188 MHSKEGKFRDVKSMIVAilEDDGVVPPKSRLNRQQveHWIRDIQAiagimkirpeftKLQQEFNTLESAELRLSHLHFGY 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 466 MELEKDLALRAQEVAELRRRLESSKPPGDVDMSLS---LLQEISAL-------QEKLEAIHTDH----QGEMTSLKEH-- 529
Cdd:pfam12128 268 KSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrdeLNGELSAAdaavakdRSELEALEDQHgaflDADIETAAADqe 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 530 ----FGAREEAFQKEIKALHTATEKLSKENESLRSKLDhanKENSDVIALWKSKLE----------TAIASHQQAME-EL 594
Cdd:pfam12128 348 qlpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK---EQNNRDIAGIKDKLAkireardrqlAVAEDDLQALEsEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 595 KVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAhaKEMETMQAKLMKIIKEKEDsLEAVKARLDSAE 674
Cdd:pfam12128 425 REQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFD--ERIERAREEQEAANAEVER-LQSELRQARKRR 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 675 DQHLVemedtlnKLQEAEIKANSITKELQEKELVLTGLQDSL-----NQVNQVKETLEK--------------------- 728
Cdd:pfam12128 502 DQASE-------ALRQASRRLEERQSALDELELQLFPQAGTLlhflrKEAPDWEQSIGKvispellhrtdldpevwdgsv 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 729 -----------ELQTLKEKFASTSEEAV-----SAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR 792
Cdd:pfam12128 575 ggelnlygvklDLKRIDVPEWAASEEELrerldKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLD 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 793 EDQLVKAKEKLENDIAEIMKmsgdnssqltkmnDELRLKERSVEELqlkltkanenasflqksigEVTLKAEQSQQQAAR 872
Cdd:pfam12128 655 LRRLFDEKQSEKDKKNKALA-------------ERKDSANERLNSL-------------------EAQLKQLDKKHQAWL 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 873 KHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEEL 952
Cdd:pfam12128 703 EEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAE--LKALETWYKRDLASLGVDPDVIAKLKREIRTL 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 953 KTQADKAksltylltsAKKEIEVMSEElrglKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSvnetl 1032
Cdd:pfam12128 781 ERKIERI---------AVRRQEVLRYF----DWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRA----- 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1033 HLEKERVSEEKqvaekryqQEHRDRESLVAEREkLLKEINAaqeelLKMHMENDSLEASKVSMQVLIEELrfcKDKLMAM 1112
Cdd:pfam12128 843 KLEMERKASEK--------QQVRLSENLRGLRC-EMSKLAT-----LKEDANSEQAQGSIGERLAQLEDL---KLKRDYL 905
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 568937390 1113 SEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQKALVQEIEDL 1169
Cdd:pfam12128 906 SESVKKYVEHFKNVIADHSGSGLAETWESLREEDHYQNDKGIRLLDYRKLVPYLEQW 962
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1238-1948 |
2.71e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.22 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1238 TLRTQLDCASKALRKAeldmRQLQTSNSSLTKLLEEIKTCRAItdseciqllHEKESLAASE-----RTLLAEKEELlsE 1312
Cdd:COG5022 759 YLRRRYLQALKRIKKI----QVIQHGFRLRRLVDYELKWRLFI---------KLQPLLSLLGsrkeyRSYLACIIKL--Q 823
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1313 NRIITEKLSKQSEEVARLEMGLNEKITYLTSEKevacqkvakLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLRR 1392
Cdd:COG5022 824 KTIKREKKLRETEEVEFSLKAEVLIQKFGRSLK---------AKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSI 894
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1393 KY--------DQEAT----NRRIVMQEKMKLLGNIDA-LKKELQERKKENQ---ELTSSKCDLSLL-----LKEAQDAKK 1451
Cdd:COG5022 895 SSlklvnlelESEIIelkkSLSSDLIENLEFKTELIArLKKLLNNIDLEEGpsiEYVKLPELNKLHeveskLKETSEEYE 974
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1452 NLEKEHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQtlILEKEARAKESETSLYENNKLHGRV 1531
Cdd:COG5022 975 DLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAE--LQSASKIISSESTELSILKPLQKLK 1052
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1532 VLLEEEIQRLRVCSEQLQTEN--------FTLTQEKTNSEQKVeeiIKEKELLSAETaQLAANIETLKSDFAALSKSKLE 1603
Cdd:COG5022 1053 GLLLLENNQLQARYKALKLRRensllddkQLYQLESTENLLKT---INVKDLEVTNR-NLVKPANVLQFIVAQMIKLNLL 1128
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1604 LQELHSCLTKILDdlrlnhevalteraevLQDNKNLLAEKREMMLRNEEALKEKEKLEESYFILQKEISQLAqtNSHISA 1683
Cdd:COG5022 1129 QEISKFLSQLVNT----------------LEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQ--SALYDE 1190
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1684 NLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEdAMQIMEQMTKEKTETLASLEDTKQTNarlqneldtlkENN 1763
Cdd:COG5022 1191 KSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKLISE-GWVPTEYSTSLKGFNNLNKKFDTPAS-----------MSN 1258
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1764 LKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENV--KLAEELGRTRDEVtSHQKLEEERSVLNN 1841
Cdd:COG5022 1259 EKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLrwKSATEVNYNSEEL-DDWCREFEISDVDE 1337
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1842 QLLEMKKSLPSNTLRESEfrkdadeekasLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKslhSVVQTLESDKV 1921
Cdd:COG5022 1338 ELEELIQAVKVLQLLKDD-----------LNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPK---EILKKIEALLI 1403
|
730 740
....*....|....*....|....*..
gi 568937390 1922 KLELKVKNLELQLKENKRQLSSSSGNT 1948
Cdd:COG5022 1404 KQELQLSLEGKDETEVHLSEIFSEEKS 1430
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
793-1225 |
2.84e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 793 EDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGE----VTLKAEQSQQ 868
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEElreeLEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 869 QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQD 948
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 949 MEELKTQADKAKSltyLLTSAKKEIEVMSEELRGLKSEKQLYAQEAN--------ALKLEKGSLLSKLIEVETKITLLQE 1020
Cdd:COG4717 208 LAELEEELEEAQE---ELEELEEELEQLENELEAAALEERLKEARLLlliaaallALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1021 DQQKLWSVNETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSM--QVL 1098
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELeeELQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1099 IEELRFCKDKLMAMS------------------EKARAEKEHLEGQVKKLTAENLVLVKDKDDviQKLQSAYEELVKDQK 1160
Cdd:COG4717 365 LEELEQEIAALLAEAgvedeeelraaleqaeeyQELKEELEELEEQLEELLGELEELLEALDE--EELEEELEELEEELE 442
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568937390 1161 ALVQEIEDLTTEKKSAAE--KQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEAT 1225
Cdd:COG4717 443 ELEEELEELREELAELEAelEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEY 509
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
933-1371 |
3.31e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 933 DKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYA--QEANALKLEKGSLLSKLIE 1010
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1011 VETKITLLQEDQQKLWSVNETLHLEKERVSEEKQ----VAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMEND 1086
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEqlslATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1087 SLEASKVSMQvLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVkdkddVIQKLQSAYEELVKDQKALVQEI 1166
Cdd:COG4717 231 QLENELEAAA-LEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFL-----VLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1167 EDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQEKLsASLEATLQVKQLLSTEAETLRTQLDCA 1246
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA-EELEEELQLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1247 SKALRKAELDMRQLQtsnssltKLLEEIKTCRAITDSECIQLLHEKEslAASERTLLAEKEELLSENRIITEKLSKQSEE 1326
Cdd:COG4717 384 EEELRAALEQAEEYQ-------ELKEELEELEEQLEELLGELEELLE--ALDEEELEEELEELEEELEELEEELEELREE 454
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 568937390 1327 VARLEmglnEKITYLTSEKEV--ACQKVAKLKKQQDSLLKEKSALEL 1371
Cdd:COG4717 455 LAELE----AELEQLEEDGELaeLLQELEELKAELRELAEEWAALKL 497
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1497-1931 |
3.42e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1497 EEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELL 1576
Cdd:PRK02224 289 EELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAEL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1577 SAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHEVALTERAEVLQDNKNLLAEKREMMLRNEEA--L 1654
Cdd:PRK02224 369 ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAeaL 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1655 KEKEKLEESYFILqkEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTA--------AQTAEDAMQ 1726
Cdd:PRK02224 449 LEAGKCPECGQPV--EGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDrierleerREDLEELIA 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1727 IMEQMTKEKTETLASLEDTKQtnaRLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQ------AAAQ 1800
Cdd:PRK02224 527 ERRETIEEKRERAEELRERAA---ELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERirtllaAIAD 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1801 KSQQLSALQEENVKLAEELGRTRDEVTS----HQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDA-DEEKASLQKSI 1875
Cdd:PRK02224 604 AEDEIERLREKREALAELNDERRERLAEkrerKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDElREERDDLQAEI 683
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 1876 sltsALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLES--DKVKLELKVKNLE 1931
Cdd:PRK02224 684 ----GAVENELEELEELRERREALENRVEALEALYDEAEELESmyGDLRAELRQRNVE 737
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
915-1447 |
4.32e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 4.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 915 TKHEEILQNLQKMLADTEDKLKAAQEANRdlMQDmEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEA 994
Cdd:pfam05483 250 TEKENKMKDLTFLLEESRDKANQLEEKTK--LQD-ENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 995 NALKLEKGSLLSKLIEVETKITLL-QEDQQKLWSVNETLHLEKERVsEEKQVAEKRYQQEHRDRESLVAEREKLLKEINA 1073
Cdd:pfam05483 327 CQLTEEKEAQMEELNKAKAAHSFVvTEFEATTCSLEELLRTEQQRL-EKNEDQLKIITMELQKKSSELEEMTKFKNNKEV 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1074 AQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQ---- 1149
Cdd:pfam05483 406 ELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEkekl 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1150 ------SAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLE 1223
Cdd:pfam05483 486 knieltAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVK 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1224 ATLQVKQLLSTEAETLRTQLDCASKALRKAELDMR-QLQTSNSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERTL 1302
Cdd:pfam05483 566 CKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKkQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELEL 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1303 LAEKEELLSenriITEKLSKQSEEVARLEMGLNEKItyltSEKEVACQKVAKLKKQQDSLLKEKSALEL--------QNG 1374
Cdd:pfam05483 646 ASAKQKFEE----IIDNYQKEIEDKKISEEKLLEEV----EKAKAIADEAVKLQKEIDKRCQHKIAEMValmekhkhQYD 717
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568937390 1375 DLLADRESSIktigDLRRKYDQEATNRRIVMQEKMKLLGN-IDALKKELQERKKENQELTSSKCDLSLLLKEAQ 1447
Cdd:pfam05483 718 KIIEERDSEL----GLYKNKEQEQSSAKAALEIELSNIKAeLLSLKKQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
427-1021 |
4.97e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 4.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 427 LNQLEEEKRKVEDLQFRVEEEsitkgdlevatvseksrIMELEKDLALRAQEVAELRRRLESSKppgdvDMSLSLLQEIS 506
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTE-----------------IKKKEKELEKLNNKYNDLKKQKEELE-----NELNLLEKEKL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 507 ALQEKLEAIHTDHqgemtSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD---VIALWKSKLETA 583
Cdd:TIGR04523 184 NIQKNIDKIKNKL-----LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEkttEISNTQTQLNQL 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 584 IASHQQAMEELKVSFSKgIGTDSAEFAELKTQIERLrldyQHEIESLQSKQDSERSAHAKEmetmqaklmkIIKEKEDSL 663
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKE-LEQNNKKIKELEKQLNQL----KSEISDLNNQKEQDWNKELKS----------ELKNQEKKL 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 664 EAVKARLDSAEdQHLVEMEDTLNKL----QEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFAS 739
Cdd:TIGR04523 324 EEIQNQISQNN-KIISQLNEQISQLkkelTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQN 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 740 TSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSS 819
Cdd:TIGR04523 403 QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 820 QLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEeekkeleekllelekkmETSYNQC 899
Cdd:TIGR04523 483 NLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES-----------------KISDLED 545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 900 QDLKAKYEKASSETKTKHEEILQNLQKmLADTEDKLKAAQEANRDLMQDME--------ELKTQADKAKSLTYLLTSAKK 971
Cdd:TIGR04523 546 ELNKDDFELKKENLEKEIDEKNKEIEE-LKQTQKSLKKKQEEKQELIDQKEkekkdlikEIEEKEKKISSLEKELEKAKK 624
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 568937390 972 EIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQED 1021
Cdd:TIGR04523 625 ENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTK 674
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1627-1987 |
5.18e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 5.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1627 TERAEVLQDNKNLLAEKREMMLRNEEALKEKEKLEESyfilQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKI 1706
Cdd:PRK02224 213 SELAELDEEIERYEEQREQARETRDEADEVLEEHEER----REELETLEAEIEDLRETIAETEREREELAEEVRDLRERL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1707 RELETLHSFTAAQT------AEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVE------------ 1768
Cdd:PRK02224 289 EELEEERDDLLAEAglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEEraeelreeaael 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1769 --ELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ-KLEEERSVL--NNQL 1843
Cdd:PRK02224 369 esELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEaTLRTARERVeeAEAL 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1844 LEMKKSLPSNTLRESEFRKDADEEKaslqksisltSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKL 1923
Cdd:PRK02224 449 LEAGKCPECGQPVEGSPHVETIEED----------RERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERR 518
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568937390 1924 ELKVKNLELQ---LKENKRQLSSS---SGNTDAQAEE-DERAQESQQMIDFLNSVIVDLQRKNQDLKMKVE 1987
Cdd:PRK02224 519 EDLEELIAERretIEEKRERAEELrerAAELEAEAEEkREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1744-2020 |
5.37e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.45 E-value: 5.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1744 DTKQTNARLQNELDTLKENNLKTVEELNKSKELLSvenqkmEEFKKEIETLKQAAAQKSQQLSALQEENVKLAE-ELGRT 1822
Cdd:COG5022 814 SYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLI------QKFGRSLKAKKRFSLLKKETIYLQSAQRVELAErQLQEL 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1823 RDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASLQKSISLTSALLTE--KDAELEKLRNEVTVLR 1900
Cdd:COG5022 888 KIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEyvKLPELNKLHEVESKLK 967
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1901 GENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQ 1980
Cdd:COG5022 968 ETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKP 1047
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568937390 1981 DLKMKVEMMSEA-ALNGNGEDL-----NSYDSDDQEKQSKKKPRLF 2020
Cdd:COG5022 1048 LQKLKGLLLLENnQLQARYKALklrreNSLLDDKQLYQLESTENLL 1093
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
724-842 |
5.72e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 5.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 724 ETLEKELQTLKEKfaSTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR----EDQLVKA 799
Cdd:COG2433 376 LSIEEALEELIEK--ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 568937390 800 KEKLENDI---AEIMKMSGDNsSQLTKmndELRLKERSVEELQLKL 842
Cdd:COG2433 454 RSEERREIrkdREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
676-810 |
5.82e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 5.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 676 QHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMqdtv 755
Cdd:COG1579 7 RALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL---- 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 756 nKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEI 810
Cdd:COG1579 83 -GNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAEL 136
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1488-1687 |
6.50e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 6.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1488 LQEECQKLNEEIREIQQTLILEKEARAKESETslyennklhgRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVE 1567
Cdd:COG4913 257 IRELAERYAAARERLAELEYLRAALRLWFAQR----------RLELLEAELEELRAELARLEAELERLEARLDALREELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1568 EIikEKELLSAETAQlaanIETLKSDFAALSKSKLELQELHSCLTKILDDLRL---NHEVALTERAEVLQDNKNLLAEKR 1644
Cdd:COG4913 327 EL--EAQIRGNGGDR----LEQLEREIERLERELEERERRRARLEALLAALGLplpASAEEFAALRAEAAALLEALEEEL 400
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568937390 1645 EmMLRNE--EALKEKEKLEESYFILQKEISQLAQTNSHISANLLE 1687
Cdd:COG4913 401 E-ALEEAlaEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1034-1244 |
7.25e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 7.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1034 LEKERVSEEKQVAEKRYQQEHRDRESLVAEREK--LLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFckDKLMA 1111
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLERAHEALEDAREQieLLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRL--ELLEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1112 MSEKARAEKEHLEGQVKKLTAEnlvlVKDKDDVIQKLQSAYEELVKDQKA-LVQEIEDLTTEKKSAAEKQMSLDNTC--- 1187
Cdd:COG4913 296 ELEELRAELARLEAELERLEAR----LDALREELDELEAQIRGNGGDRLEqLEREIERLERELEERERRRARLEALLaal 371
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 1188 -LTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLD 1244
Cdd:COG4913 372 gLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
536-764 |
9.38e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 9.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 536 AFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvialwKSKLETAIASHQQAMEELkvsfSKGIGTDSAEFAELKTQ 615
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKE--------EKALLKQLAALERRIAAL----ARRIRALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 616 IERLrldyQHEIESLQSKQDSERSAHAKEMETMQ----AKLMKIIKEKEDSLEAVKA-----RLDSAEDQHLVEMEDTLN 686
Cdd:COG4942 85 LAEL----EKEIAELRAELEAQKEELAELLRALYrlgrQPPLALLLSPEDFLDAVRRlqylkYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 687 KLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQ 764
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1556-1818 |
1.05e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1556 TQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHScltkilddlrlnhevALTERAEVLQD 1635
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR---------------ALEQELAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1636 NKNLLAEKREMMLRNEEALKEKekleesyfiLQKEISQLAQTNSHISANLLESQSENRTLrkdkskltlkIRELETLHSF 1715
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEE---------LAELLRALYRLGRQPPLALLLSPEDFLDA----------VRRLQYLKYL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1716 TAAQtaedaMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLK 1795
Cdd:COG4942 145 APAR-----REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
250 260
....*....|....*....|...
gi 568937390 1796 QAAAQKSQQLSALQEENVKLAEE 1818
Cdd:COG4942 220 QEAEELEALIARLEAEAAAAAER 242
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1020-1332 |
1.05e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.12 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1020 EDQQKLWSVNETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEEllkmhmendsleaskvsmqVLI 1099
Cdd:PLN02939 114 EQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGK-------------------INI 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1100 EELRFCK-DKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAE 1178
Cdd:PLN02939 175 LEMRLSEtDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAE 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1179 KqmslDNTCLTLKAERENLLQTNRDLQFekdTLRQGQEKLSASleATLQVKQLLStEAETLRTQLDCASKALRKAELDMR 1258
Cdd:PLN02939 255 T----EERVFKLEKERSLLDASLRELES---KFIVAQEDVSKL--SPLQYDCWWE-KVENLQDLLDRATNQVEKAALVLD 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1259 QLQTSNSSLTKL---LEEIKTCRaiTDSECIQLLHEKesLAASERTLLAEKEELLSENRI-------ITEKLSKQSEEVA 1328
Cdd:PLN02939 325 QNQDLRDKVDKLeasLKEANVSK--FSSYKVELLQQK--LKLLEERLQASDHEIHSYIQLyqesikeFQDTLSKLKEESK 400
|
....
gi 568937390 1329 RLEM 1332
Cdd:PLN02939 401 KRSL 404
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
694-1053 |
1.11e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.74 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 694 KANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELE 773
Cdd:COG4372 11 ARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 774 KLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ 853
Cdd:COG4372 91 AAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 854 KSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTED 933
Cdd:COG4372 171 QELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEE 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 934 KLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVET 1013
Cdd:COG4372 251 LLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLEL 330
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 568937390 1014 KITLLQEDQQKLWSVNETLHLEKERVSEEKQVAEKRYQQE 1053
Cdd:COG4372 331 ALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
645-869 |
1.22e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 645 METMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKE 724
Cdd:COG4717 40 LAFIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 725 TLEKELQTlkekfastseeavsaqtrmQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLE 804
Cdd:COG4717 120 KLEKLLQL-------------------LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 805 ndiAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQ 869
Cdd:COG4717 181 ---ELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1043-1336 |
1.32e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.73 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1043 KQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEH 1122
Cdd:pfam07888 54 NRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1123 LEGQVKKLTAENLvlvkDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLdntCLTLKAERENLLQTNR 1202
Cdd:pfam07888 134 LEEDIKTLTQRVL----ERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSL---SKEFQELRNSLAQRDT 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1203 DLQFEKDTLRQGQEKLSASLEATLQVKQLLsteaETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITD 1282
Cdd:pfam07888 207 QVLQLQDTITTLTQKLTTAHRKEAENEALL----EELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAA 282
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 568937390 1283 SECIQLLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEMGLNE 1336
Cdd:pfam07888 283 QLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQE 336
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
903-1785 |
1.57e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 903 KAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSL-----TYLLTSAKKEIEV-M 976
Cdd:PTZ00121 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEArkaedAKKAEAARKAEEVrK 1189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 977 SEELRglKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEE-KQVAEKRYQQEHR 1055
Cdd:PTZ00121 1190 AEELR--KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEiRKFEEARMAHFAR 1267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1056 DRESLVAEREKLLKEINAAQEELLKmhmendsleaskvsmqvliEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAEnl 1135
Cdd:PTZ00121 1268 RQAAIKAEEARKADELKKAEEKKKA-------------------DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE-- 1326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1136 vlVKDKDDVIQKlqsAYEELVKDQKALVQEIEDLTTEKKSAAEKQmsldntcltlkaerenllqtnrdlqfEKDTLRQGQ 1215
Cdd:PTZ00121 1327 --AKKKADAAKK---KAEEAKKAAEAAKAEAEAAADEAEAAEEKA--------------------------EAAEKKKEE 1375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1216 EKLSAsleatlqvkQLLSTEAETLRTqldcASKALRKAELDMRQLQtsnsSLTKLLEEIKTCraitdseciqllheKESL 1295
Cdd:PTZ00121 1376 AKKKA---------DAAKKKAEEKKK----ADEAKKKAEEDKKKAD----ELKKAAAAKKKA--------------DEAK 1424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1296 AASERTLLAEKEELLSENRIITEKLSKQSEEVARLEmglNEKITYLTSEKEVACQKVAKLKKQQDSlLKEKSALELQNGD 1375
Cdd:PTZ00121 1425 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE---EAKKKAEEAKKADEAKKKAEEAKKADE-AKKKAEEAKKKAD 1500
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1376 LLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKllgnIDALKKElQERKKENQELTSSKCDLSLLLKEAQDAKKNLEK 1455
Cdd:PTZ00121 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK----ADEAKKA-EEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1456 EHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLLE 1535
Cdd:PTZ00121 1576 KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA 1655
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1536 EEIQRLRVCSEQLQTENftlTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKIL 1615
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEE---DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1616 DDLRLNHE--VALTERAEVLQDNKNLLA------EKREMMLRNEEALKEKEKLEESYFILQKEISQLAQTNSHISANLLE 1687
Cdd:PTZ00121 1733 EEAKKEAEedKKKAEEAKKDEEEKKKIAhlkkeeEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIE 1812
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1688 SQSENRTLRKDKSkltlkirelETLHSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNArlqnELDTLKENNLKT- 1766
Cdd:PTZ00121 1813 GGKEGNLVINDSK---------EMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNK----EADFNKEKDLKEd 1879
|
890 900
....*....|....*....|
gi 568937390 1767 -VEELNKSKELLSVENQKME 1785
Cdd:PTZ00121 1880 dEEEIEEADEIEKIDKDDIE 1899
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1728-1910 |
1.58e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 42.82 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1728 MEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNkskellsvenQKMEEFKKEIETLKQAAAQKSQQLSA 1807
Cdd:pfam09787 49 LEELRQERDLLREEIQKLRGQIQQLRTELQELEAQQQEEAESSR----------EQLQELEEQLATERSARREAEAELER 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1808 LQEENVKLAEELGRTRDE-VTSHQKLEEERSVLNNQLleMKKSLPSNTLRESEFRKDADEEkaSLQKSISLTSALLTEKD 1886
Cdd:pfam09787 119 LQEELRYLEEELRRSKATlQSRIKDREAEIEKLRNQL--TSKSQSSSSQSELENRLHQLTE--TLIQKQTMLEALSTEKN 194
|
170 180
....*....|....*....|....*..
gi 568937390 1887 A---ELEKLRNEVTVLRGENATAKSLH 1910
Cdd:pfam09787 195 SlvlQLERMEQQIKELQGEGSNGTSIN 221
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1711-1945 |
1.68e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1711 TLHSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnnlktveELNKSKELLSVENQKMEEFKKE 1790
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER-------RIAALARRIRALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1791 IETLKQAAAQKSQQLSALQEENVKLAEELGRTRDE------VTSHQKLEEERSV-----LNNQLLEMKKSLPSNTLRESE 1859
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELLRALYRLGRQpplallLSPEDFLDAVRRLqylkyLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1860 FRKDADEEKASLQKSIsltsALLTEKDAELEKLRNEV-TVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENK 1938
Cdd:COG4942 165 LRAELEAERAELEALL----AELEEERAALEALKAERqKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
....*..
gi 568937390 1939 RQLSSSS 1945
Cdd:COG4942 241 ERTPAAG 247
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
459-833 |
1.77e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 459 VSEKSRIMELEKDLAlraqEVAELRRRLESskppgDVDMS---LSLLQEISALQEKLEAIHTDhQGEMTS-LKEHFGARE 534
Cdd:COG3096 302 AEEQYRLVEMARELE----ELSARESDLEQ-----DYQAAsdhLNLVQTALRQQEKIERYQED-LEELTErLEEQEEVVE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 535 EAfQKEIKALHTATEKLSKENESLRSKLdhankensdviALWKSKLET----AIASHQ--QAMEELKVSFskGIGTDSAE 608
Cdd:COG3096 372 EA-AEQLAEAEARLEAAEEEVDSLKSQL-----------ADYQQALDVqqtrAIQYQQavQALEKARALC--GLPDLTPE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 609 FAELKTQIERLRLDYQHEiESLQSKQD-SERSAHAKEMETMQAKLMKIIKEKEDSLEAVKAR---LDSAEDQHLVEMEDT 684
Cdd:COG3096 438 NAEDYLAAFRAKEQQATE-EVLELEQKlSVADAARRQFEKAYELVCKIAGEVERSQAWQTARellRRYRSQQALAQRLQQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 685 LN-KLQEAEIKANsitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQ---TRMQDTVNKLHQ 760
Cdd:COG3096 517 LRaQLAELEQRLR----QQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVeqrSELRQQLEQLRA 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 761 KEEQFN-------VLSSELEKLREN----LTDMEA----------KFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSS 819
Cdd:COG3096 593 RIKELAarapawlAAQDALERLREQsgeaLADSQEvtaamqqlleREREATVERDELAARKQALESQIERLSQPGGAEDP 672
|
410
....*....|....
gi 568937390 820 QLtkmndeLRLKER 833
Cdd:COG3096 673 RL------LALAER 680
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
741-1132 |
1.84e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 741 SEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREdQLVKA----KEKLENDIAEIMKMsgd 816
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHL-NLVQTalrqQEKIERYQADLEEL--- 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 817 nSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVtlkaeqsqQQAarkheeekkeleekllelEKKMETSY 896
Cdd:PRK04863 361 -EERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADY--------QQA------------------LDVQQTRA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 897 NQCQDLKAKYEKASSETKTKHEEiLQNLQKMLADTEDKLKAAQEANRDLMQDM---EELKTQADKAKSltyLLTSAKKEI 973
Cdd:PRK04863 414 IQYQQAVQALERAKQLCGLPDLT-ADNAEDWLEEFQAKEQEATEELLSLEQKLsvaQAAHSQFEQAYQ---LVRKIAGEV 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 974 E------VMSEELRGLKSEKQLyAQEANALKLEKGSLLSKLIEVETKITLLQEDQQK----------LWSVNETLHLEKE 1037
Cdd:PRK04863 490 SrseawdVARELLRRLREQRHL-AEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRlgknlddedeLEQLQEELEARLE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1038 RVSEEKQVAEKRYQQEHRDRESLVAEREKLLK---EINAAQEEL--LKMHMENDSLEASKVS--MQVLIEELRfckdKLM 1110
Cdd:PRK04863 569 SLSESVSEARERRMALRQQLEQLQARIQRLAArapAWLAAQDALarLREQSGEEFEDSQDVTeyMQQLLERER----ELT 644
|
410 420
....*....|....*....|..
gi 568937390 1111 AMSEKARAEKEHLEGQVKKLTA 1132
Cdd:PRK04863 645 VERDELAARKQALDEEIERLSQ 666
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1350-1599 |
2.06e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1350 QKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKEn 1429
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1430 qeltsskcdLSLLLKEAQdakKNLEKEHTSMIQAKDNLNAelktccceknmLLRDGLNLQEECQKLNEEIREIQQTLile 1509
Cdd:COG4942 106 ---------LAELLRALY---RLGRQPPLALLLSPEDFLD-----------AVRRLQYLKYLAPARREQAEELRADL--- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1510 kearakesetslyenNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIET 1589
Cdd:COG4942 160 ---------------AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
250
....*....|
gi 568937390 1590 LKSDFAALSK 1599
Cdd:COG4942 225 LEALIARLEA 234
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1107-1850 |
2.19e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1107 DKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQKALV------QEIEDLTTEKKSAAEKQ 1180
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLRealqqtQQSHAYLTQKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1181 MSLDNTCLTLKAERENL--LQTNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCASKALRKAELDMR 1258
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELraQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1259 Q---LQTSNSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASE--RTLLAEKEELLSENRIITEKLSKQSEEVArlemg 1333
Cdd:TIGR00618 336 QqssIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhiHTLQQQKTTLTQKLQSLCKELDILQREQA----- 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1334 lneKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLRRKYD----QEATNRRIVMQEKM 1409
Cdd:TIGR00618 411 ---TIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKereqQLQTKEQIHLQETR 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1410 KllgnidalKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEhTSMIQAKDNLNAELKTcccEKNMLLRDGLNLQ 1489
Cdd:TIGR00618 488 K--------KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPL-TRRMQRGEQTYAQLET---SEEDVYHQLTSER 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1490 EECQKLNEEIREIQQTLILEKEARAKESEtslyENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLtQEKTNSEQKVEEI 1569
Cdd:TIGR00618 556 KQRASLKEQMQEIQQSFSILTQCDNRSKE----DIPNLQNITVRLQDLTEKLSEAEDMLACEQHAL-LRKLQPEQDLQDV 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1570 IKEKELLSAETAQLAANIETLKSDFAAlsksklELQELHSCLTKILDDLRLNHEVALTERAevlQDNKNLLAEKREMMLR 1649
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQ------ERVREHALSIRVLPKELLASRQLALQKM---QSEKEQLTYWKEMLAQ 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1650 NEEALKEKEKLEESYFILQKEISQLaqtnshisanlleSQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAMQIME 1729
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREFNEIENA-------------SSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNE 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1730 QMTKEkTETLASLEDTKQTNARLQNELDTLkennlktveeLNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQ 1809
Cdd:TIGR00618 769 EVTAA-LQTGAELSHLAAEIQFFNRLREED----------THLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRL 837
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 568937390 1810 EENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSL 1850
Cdd:TIGR00618 838 EEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1102-1631 |
2.34e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1102 LRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQM 1181
Cdd:COG4717 40 LAFIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1182 SLdntcltlkaerENLLQTNRDLQfekdtlrqgqeklsasleatlqvkqllstEAETLRTQLDCASKALRKAELDMRQLQ 1261
Cdd:COG4717 120 KL-----------EKLLQLLPLYQ-----------------------------ELEALEAELAELPERLEELEERLEELR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1262 TSNSSLTKLLEEIKTCRAITDSECIQLLHEKEslaASERTLLAEKEELLSENRIITEKLSKQSEEVARLEmglnEKITYL 1341
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATE---EELQDLAEELEELQQRLAELEEELEEAQEELEELE----EELEQL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1342 TSEKEVAcQKVAKLKKQQDSLLKEKSALELQ-NGDLLADRESSIKTIGDL-------------RRKYDQEATNRRIVMQE 1407
Cdd:COG4717 233 ENELEAA-ALEERLKEARLLLLIAAALLALLgLGGSLLSLILTIAGVLFLvlgllallflllaREKASLGKEAEELQALP 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1408 KMKLLGNIDaLKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSM--IQAKDNLNAELKTCCCEKNMLLRDG 1485
Cdd:COG4717 312 ALEELEEEE-LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELqlEELEQEIAALLAEAGVEDEEELRAA 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1486 LNLQEECQKLNEEIREIQQTLILEKEARAKESETSLYENnklhgrvvlLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQK 1565
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE---------LEEELEELEEELEELEEELEELREELAELEAE 461
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568937390 1566 VEEIIKEKELlsaetAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHEVALTERAE 1631
Cdd:COG4717 462 LEQLEEDGEL-----AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLERAS 522
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1412-1840 |
2.42e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1412 LGNIDALKKELQERKKENQELTSSKCDLSLL---LKEAQDAKKNLEKEHTSMIQAKDN---------LNAELKTCCCEKN 1479
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEELEELeeeLEELEAELEELREELEKLEKLLQLlplyqeleaLEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1480 ML---LRDGLNLQEECQKLNEEIREIQQTLILEKE----ARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTEn 1552
Cdd:COG4717 150 ELeerLEELRELEEELEELEAELAELQEELEELLEqlslATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE- 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1553 FTLTQEKTNSEQKVEEIIKEKELLSAETAQLAanIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHEVALTERAEV 1632
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLLLIAAALLA--LLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1633 LQdnknllAEKREMMLRNEEALKEKEKLEESYFILQKEISQLAQTNSHIsanllesQSENRTLRKDKSKLTLKIRELETL 1712
Cdd:COG4717 307 LQ------ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEEL-------QELLREAEELEEELQLEELEQEIA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1713 HSFTAAQTAEDamqimeqmtkektETLASLEDTKQTNARLQNELDTLKENnlktVEELNKSKELLSVENQKmEEFKKEIE 1792
Cdd:COG4717 374 ALLAEAGVEDE-------------EELRAALEQAEEYQELKEELEELEEQ----LEELLGELEELLEALDE-EELEEELE 435
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568937390 1793 TLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLN 1840
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKA 483
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1287-2016 |
2.45e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1287 QLLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEMGLNEKITYLTSEKEvacqKVAKLKKQQDSLLKEK 1366
Cdd:TIGR00606 210 KYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDN----EIKALKSRKKQMEKDN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1367 SALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKmkllgnIDALKKELQERKKENQELTSSKCDLSLLLK-- 1444
Cdd:TIGR00606 286 SELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRE------LEKLNKERRLLNQEKTELLVEQGRLQLQADrh 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1445 EAQDAKKNLEKEHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSLYEN 1524
Cdd:TIGR00606 360 QEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLG 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1525 NKLHGRVVLLEEEIQRLRVCSEQLQTenftLTQEKTNSEQKVEEIIKEKELLSaeTAQLAANIETLKSDFAALSKSKLEL 1604
Cdd:TIGR00606 440 RTIELKKEILEKKQEELKFVIKELQQ----LEGSSDRILELDQELRKAERELS--KAEKNSLTETLKKEVKSLQNEKADL 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1605 QELHSCLTKILDDLRlNHEVALTERAEVLQDNKNLLAEKREMMLRNEEAL---------------------KEKEKLEES 1663
Cdd:TIGR00606 514 DRKLRKLDQEMEQLN-HHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELtsllgyfpnkkqledwlhsksKEINQTRDR 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1664 YFILQKEISQLAQTNSHISaNLLESQSENRTLRKDK-----------SKLTLKIRELETLHSFTAAQTAEDAM--QIMEQ 1730
Cdd:TIGR00606 593 LAKLNKELASLEQNKNHIN-NELESKEEQLSSYEDKlfdvcgsqdeeSDLERLKEEIEKSSKQRAMLAGATAVysQFITQ 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1731 MTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQE 1810
Cdd:TIGR00606 672 LTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1811 ENVKLAEELGRTRDEVTSHQKL-------EEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKAS-LQKSISLTSALL 1882
Cdd:TIGR00606 752 KLQKVNRDIQRLKNDIEEQETLlgtimpeEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSdLDRTVQQVNQEK 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1883 TEKDAELEKLRNEVTVLRG----ENATAKSLHSVVQTLESDKVKLELKVKNLElQLKENKRQLSS--SSGNTDAQAEEDE 1956
Cdd:TIGR00606 832 QEKQHELDTVVSKIELNRKliqdQQEQIQHLKSKTNELKSEKLQIGTNLQRRQ-QFEEQLVELSTevQSLIREIKDAKEQ 910
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937390 1957 RAQESQQMIDFLNSVIVDLQRKNQDLK---MKVEMMSEAALN--GNGEDLNSYDSDDQEKQSKKK 2016
Cdd:TIGR00606 911 DSPLETFLEKDQQEKEELISSKETSNKkaqDKVNDIKEKVKNihGYMKDIENKIQDGKDDYLKQK 975
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1534-1721 |
2.72e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1534 LEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTK 1613
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1614 ILDDLRLNHEVAL------------------------TERAEVLQDNKNLLAEKREMMLRNEEALKE-KEKLEESYFILQ 1668
Cdd:COG4942 112 ALYRLGRQPPLALllspedfldavrrlqylkylaparREQAEELRADLAELAALRAELEAERAELEAlLAELEEERAALE 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568937390 1669 KEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTA 1721
Cdd:COG4942 192 ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
791-1000 |
3.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 791 DREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLK-AEQSQQQ 869
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 870 AARKHEEEKKELEEKLLELEKKMETSYNQCQDLKA----KYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDL 945
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568937390 946 MQDMEELKTQADKAKS-LTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLE 1000
Cdd:COG4942 180 LAELEEERAALEALKAeRQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
680-873 |
3.72e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 680 EMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLH 759
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 760 QKEEQFNVLS--------------------------SELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKM 813
Cdd:COG3883 97 RSGGSVSYLDvllgsesfsdfldrlsalskiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 814 SGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARK 873
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
741-1072 |
3.95e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 741 SEEAVSAQTrmqDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ 820
Cdd:PRK11281 37 TEADVQAQL---DALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 821 LTKmndelRLKERSVEELQLKLTKANENASFLQKSIGE-----VTLK-------------AEQSQQ--------QAARKH 874
Cdd:PRK11281 114 TRE-----TLSTLSLRQLESRLAQTLDQLQNAQNDLAEynsqlVSLQtqperaqaalyanSQRLQQirnllkggKVGGKA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 875 EEEKKELEEKLLELEKKMETSYN--------QCQDL-KAKYEKASSETKTKHEEI--LQNL--QKMLADTEDKLKAAQ-- 939
Cdd:PRK11281 189 LRPSQRVLLQAEQALLNAQNDLQrkslegntQLQDLlQKQRDYLTARIQRLEHQLqlLQEAinSKRLTLSEKTVQEAQsq 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 940 -EANRdlMQDMEELKTQADKAKSLT-YLLTSAKKEIEVMSEELR-------GLKSEKQLYAQeANALkleKGSL-LSKli 1009
Cdd:PRK11281 269 dEAAR--IQANPLVAQELEINLQLSqRLLKATEKLNTLTQQNLRvknwldrLTQSERNIKEQ-ISVL---KGSLlLSR-- 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1010 evetkitLLQEDQQKLWSVNETLHLEKE----RVS--EEKQVAEKRYQ------------------QEHRDRESLVAERE 1065
Cdd:PRK11281 341 -------ILYQQQQALPSADLIEGLADRiadlRLEqfEINQQRDALFQpdayidkleaghksevtdEVRDALLQLLDERR 413
|
....*..
gi 568937390 1066 KLLKEIN 1072
Cdd:PRK11281 414 ELLDQLN 420
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1761-2016 |
4.01e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 42.25 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1761 ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA-LQEENVKLAEELGRTRDEVTSHQKLEEERSVL 1839
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKrLNENANNLIKQFENTKEKIAEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1840 NNQLLEMKKSLPSNTL--RESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGEnataKSLHSVVQTLE 1917
Cdd:COG5185 312 ESLEEQLAAAEAEQELeeSKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSS----EELDSFKDTIE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1918 SDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQqmidfLNSVIVDLQRKNQDLKMKVEMMSEAALNGN 1997
Cdd:COG5185 388 STKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQA-----TSSNEEVSKLLNELISELNKVMREADEESQ 462
|
250
....*....|....*....
gi 568937390 1998 GEDLNSYDSDDQEKQSKKK 2016
Cdd:COG5185 463 SRLEEAYDEINRSVRSKKE 481
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
898-1084 |
5.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 5.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 898 QCQDLKAKYEKASSETKT--KHEEILQNLQKmLADTEDKLKAAQEANRDLMQDMEElktqadkaksltylLTSAKKEIEV 975
Cdd:COG4913 625 ELAEAEERLEALEAELDAlqERREALQRLAE-YSWDEIDVASAEREIAELEAELER--------------LDASSDDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 976 MSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQklwsvnetlHLEKERVSEEKQVAEKRYQQEHR 1055
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE---------AAEDLARLELRALLEERFAAALG 760
|
170 180 190
....*....|....*....|....*....|....*
gi 568937390 1056 D------RESLVAEREKLLKEINAAQEELLKMHME 1084
Cdd:COG4913 761 DaverelRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
331-683 |
5.44e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 331 RTGLLTETSSRYARKISGTTALQEA---LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEA 407
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE-----------NVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 408 KMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSekSRIMELEKDLALRaqevaELRRRLE 487
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIE--ARLREIEQKLNRL-----TLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 488 SSKPPGDVDMSLSLLQEISALQEKLEAIHTDhqgemtslKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANK 567
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGK--------KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 568 EnsdvialwKSKLETAIASHQQAMEELKVsfskgigTDSAEFAELKtQIERLRLDYQHEIESLQSKQD--SERSAHAKEM 645
Cdd:TIGR02169 904 K--------IEELEAQIEKKRKRLSELKA-------KLEALEEELS-EIEDPKGEDEEIPEEELSLEDvqAELQRVEEEI 967
|
330 340 350
....*....|....*....|....*....|....*...
gi 568937390 646 ETMQAKLMKIIKEKEDsleaVKARLDSAEDQHLVEMED 683
Cdd:TIGR02169 968 RALEPVNMLAIQEYEE----VLKRLDELKEKRAKLEEE 1001
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1199-1428 |
5.67e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 5.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1199 QTNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCASKALRK-------AELDMRQLQTSNSSLTKLL 1271
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAleqelaaLEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1272 EEIKTCRAitdseciqllhekESLAASERTLLAEKEELLSENRIITEkLSKQSEEVARLEMGLNEKITYLTSEKEVACQK 1351
Cdd:COG4942 100 EAQKEELA-------------ELLRALYRLGRQPPLALLLSPEDFLD-AVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568937390 1352 VAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKE 1428
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1415-1794 |
5.71e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1415 IDALKKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEhtsmiqakdnlnaeLKTCCCEKNMLLRDGLNLQEECQK 1494
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ--------------IKKLQQEKELLEKEIERLKETIIK 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1495 LNEEIREiqqtliLEKEARAKESETslyenNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKE 1574
Cdd:TIGR04523 438 NNSEIKD------LTNQDSVKELII-----KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1575 LLSAETAQLAANIETLKSDFAALSKSKLEL-QELHSCLTKIL-DDLRLNHEVALTERAEVLQDNKNLLAEKREMMLRNEE 1652
Cdd:TIGR04523 507 ELEEKVKDLTKKISSLKEKIEKLESEKKEKeSKISDLEDELNkDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEE 586
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1653 ALKEKEKLEESYFILQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAaQTAEDAMQIMEQMT 1732
Cdd:TIGR04523 587 KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIK-ETIKEIRNKWPEII 665
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937390 1733 KEKTETLASLEDTKQTNARLQNELDTLKENNLKT------VEELNKSKELLSVENQKMEEFKKEIETL 1794
Cdd:TIGR04523 666 KKIKESKTKIDDIIELMKDWLKELSLHYKKYITRmirikdLPKLEEKYKEIEKELKKLDEFSKELENI 733
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
999-1759 |
6.00e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 999 LEKGSLLSKLIEVETKITLLQEDQQKLwsvnETLHLEKERVSeekqvaekryqQEHRDRESLVAEREKLLKEINAAQEEL 1078
Cdd:pfam12128 227 IRDIQAIAGIMKIRPEFTKLQQEFNTL----ESAELRLSHLH-----------FGYKSDETLIASRQEERQETSAELNQL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1079 LkmhmenDSLEASkvsMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKD 1158
Cdd:pfam12128 292 L------RTLDDQ---WKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEER 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1159 QKALVQEIEDLTtEKKSAAEKQMSLDNtcltlKAEREnllqtnrDLQFEKDTLRQGQEKLSASLEATLQ-VKQLLSTEAE 1237
Cdd:pfam12128 363 LKALTGKHQDVT-AKYNRRRSKIKEQN-----NRDIA-------GIKDKLAKIREARDRQLAVAEDDLQaLESELREQLE 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1238 TLRTQLDCASK--ALRKAELDMRQLQTSNSSLTKLLEEIKTCRA-ITDSECIQLLHEKESLAASERTLLAEKEELLSENR 1314
Cdd:pfam12128 430 AGKLEFNEEEYrlKSRLGELKLRLNQATATPELLLQLENFDERIeRAREEQEAANAEVERLQSELRQARKRRDQASEALR 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1315 IITEKLSKQSEEVARLEMGLNEK----ITYLTSEKEVACQKVAKL-------------------KKQQDSLLKEKSALEL 1371
Cdd:pfam12128 510 QASRRLEERQSALDELELQLFPQagtlLHFLRKEAPDWEQSIGKVispellhrtdldpevwdgsVGGELNLYGVKLDLKR 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1372 QNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLL-GNIDALKKELQERKkenQELTSSKCDLSLLLKEAQDAK 1450
Cdd:pfam12128 590 IDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQAnGELEKASREETFAR---TALKNARLDLRRLFDEKQSEK 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1451 KNLEKEHTSmiqAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQTLILE-------KEARAKESETSLYE 1523
Cdd:pfam12128 667 DKKNKALAE---RKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVvegaldaQLALLKAAIAARRS 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1524 NNKLH-------------------GRVVLLEEEIQRL------------------RVCSEQLQTENFTLTQEKTNSEQKV 1566
Cdd:pfam12128 744 GAKAElkaletwykrdlaslgvdpDVIAKLKREIRTLerkieriavrrqevlryfDWYQETWLQRRPRLATQLSNIERAI 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1567 EEIIKEKELLSAETAQLAANIETlksDFAALSKSKLELQELHSCLTKILDDLRLNHEVALTERAEvlQDNKNLLAEKREM 1646
Cdd:pfam12128 824 SELQQQLARLIADTKLRRAKLEM---ERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQ--GSIGERLAQLEDL 898
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1647 MLRNEEALKEKEKLEESY--FILQKEISQLAQTNSHISANlLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDA 1724
Cdd:pfam12128 899 KLKRDYLSESVKKYVEHFknVIADHSGSGLAETWESLREE-DHYQNDKGIRLLDYRKLVPYLEQWFDVRVPQSIMVLREQ 977
|
810 820 830
....*....|....*....|....*....|....*.
gi 568937390 1725 MQIMEQMTKEKTETLASLED-TKQTNARLQNELDTL 1759
Cdd:pfam12128 978 VSILGVDLTEFYDVLADFDRrIASFSRELQREVGEE 1013
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
964-1360 |
7.31e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 7.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 964 YLLTSAKKEIEVMSEELRGLKSEkqlYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKlwsvNETLHLEKERVSEEK 1043
Cdd:pfam17380 233 YEKMERRKESFNLAEDVTTMTPE---YTVRYNGQTMTENEFLNQLLHIVQHQKAVSERQQQ----EKFEKMEQERLRQEK 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1044 QVAEKRYQQEHRDRESLVAEREKLLKE--INAAQEellKMHMENDSlEASKVSMQVLIEELRFCKDKLMAMSEKARAEKE 1121
Cdd:pfam17380 306 EEKAREVERRRKLEEAEKARQAEMDRQaaIYAEQE---RMAMERER-ELERIRQEERKRELERIRQEEIAMEISRMRELE 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1122 HLEGQVKKLTAEnlvlVKDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSldntclTLKAERENLLQTN 1201
Cdd:pfam17380 382 RLQMERQQKNER----VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVR------RLEEERAREMERV 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1202 RDLQFEKDTlrqgqeklsasleatlQVKQLLSTEAETLRTQLDCASKALRKAELDmrqlQTSNSSLTKLLEEIKtcRAIT 1281
Cdd:pfam17380 452 RLEEQERQQ----------------QVERLRQQEEERKRKKLELEKEKRDRKRAE----EQRRKILEKELEERK--QAMI 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1282 DSECIQLLHEKE------SLAASERTLLAE----KEELLSENRIITEKLSKQSEEVARLEMglnekityLTSEKEVACQK 1351
Cdd:pfam17380 510 EEERKRKLLEKEmeerqkAIYEEERRREAEeerrKQQEMEERRRIQEQMRKATEERSRLEA--------MEREREMMRQI 581
|
....*....
gi 568937390 1352 VAKLKKQQD 1360
Cdd:pfam17380 582 VESEKARAE 590
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
364-806 |
7.68e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 7.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 364 EQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAAD--REKVELLNQLEEEKRKVEDLQ 441
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELEELE----AELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 442 FRVEEesitkgdlevatvseksrIMELEKDLALRAQEVAELRRRLESSKppgdVDMSLSLLQEISALQEKLEAIHtdhqg 521
Cdd:COG4717 153 ERLEE------------------LRELEEELEELEAELAELQEELEELL----EQLSLATEEELQDLAEELEELQ----- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 522 emtslkehfgAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKG 601
Cdd:COG4717 206 ----------QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 602 IGtdsaeFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAvkarldsaEDQHLVEM 681
Cdd:COG4717 276 AG-----VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDL--------SPEELLEL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 682 EDTLNKLQEAEIKANSITKELQEKELvLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQK 761
Cdd:COG4717 343 LDRIEELQELLREAEELEEELQLEEL-EQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEEL 421
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 568937390 762 EEQFN--VLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEND 806
Cdd:COG4717 422 LEALDeeELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
702-1262 |
8.25e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 702 LQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTD 781
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 782 MEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELqLKLTKANENASFLQKSI-GEVT 860
Cdd:PRK01156 244 LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDY-FKYKNDIENKKQILSNIdAEIN 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 861 -----------LKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLA 929
Cdd:PRK01156 323 kyhaiikklsvLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 930 DTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKL----EKGSLL 1005
Cdd:PRK01156 403 DPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINhyneKKSRLE 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1006 SKLIEVETKITLLQEDQQKLWSVNETLHLEK--ERVSEEKQVAEKRYQQEhRDRESLVAEREKLLKeINAAQEELLKMHM 1083
Cdd:PRK01156 483 EKIREIEIEVKDIDEKIVDLKKRKEYLESEEinKSINEYNKIESARADLE-DIKIKINELKDKHDK-YEEIKNRYKSLKL 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1084 EN------DSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELvK 1157
Cdd:PRK01156 561 EDldskrtSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEI-Q 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1158 DQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAErenLLQTNRDLQfekdtlrqgqeKLSASLEATLQVKQLLSTEAE 1237
Cdd:PRK01156 640 ENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSR---INDIEDNLK-----------KSRKALDDAKANRARLESTIE 705
|
570 580
....*....|....*....|....*
gi 568937390 1238 TLRTQLDCASKALRKAELDMRQLQT 1262
Cdd:PRK01156 706 ILRTRINELSDRINDINETLESMKK 730
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
1640-1805 |
9.20e-03 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 40.70 E-value: 9.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1640 LAEKREMMLRNEEAlKEKEKLEESYFILQKEISQL-AQTNSHISANLLESQSENRTLRKDkSKLTLKIRElETLHSFTAA 1718
Cdd:COG4487 41 DAAKREAALELAEA-KAKAQLQEQVAEKDAEIAELrARLEAEERKKALAVAEEKEKELAA-LQEALAEKD-AKLAELQAK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1719 QtaedamqiMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEN-NLKTVEELNKSKELLSVENQK-MEEFKKEIETLKQ 1796
Cdd:COG4487 118 E--------LELLKKERELEDAKREAELTVEKERDEELDELKEKlKKEEEEKQLAEKSLKVAEYEKqLKDMQEQIEELKR 189
|
....*....
gi 568937390 1797 AAAQKSQQL 1805
Cdd:COG4487 190 KKEQGSTQL 198
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
462-697 |
9.35e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 9.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 462 KSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMslsLLQEISALQEKLEAIhtdhQGEMTSLKehfgAREEAFQKEI 541
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKL---LLQQLSELESQLAEA----RAELAEAE----ARLAALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 542 KALHTATEKLSkeneslrskldhankeNSDVIAlwksKLETAIASHQQAMEELKVSFskgiGTDSAEFAELKTQIERLRL 621
Cdd:COG3206 250 GSGPDALPELL----------------QSPVIQ----QLRAQLAELEAELAELSARY----TPNHPDVIALRAQIAALRA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 622 DYQHEIESLQSKQDSERSAHAKEMETMQAKL------MKIIKEKEDSLEAVKARLDSAEDQHlvemEDTLNKLQEAEIKA 695
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQLaqlearLAELPELEAELRRLEREVEVARELY----ESLLQRLEEARLAE 381
|
..
gi 568937390 696 NS 697
Cdd:COG3206 382 AL 383
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
900-1786 |
9.82e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 9.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 900 QDLKAKYEKASSETKTKHEEILQNLQKMLaDTEDKLKAAQEANRDLMQDMEELKTQADKA-----KSLTYLLTSAKKEIE 974
Cdd:TIGR00606 237 REIVKSYENELDPLKNRLKEIEHNLSKIM-KLDNEIKALKSRKKQMEKDNSELELKMEKVfqgtdEQLNDLYHNHQRTVR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 975 VMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKE-RVSEEKQVAEKRYQQE 1053
Cdd:TIGR00606 316 EKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLElDGFERGPFSERQIKNF 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1054 HR-DRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTA 1132
Cdd:TIGR00606 396 HTlVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1133 ENLVLVKDKDDV-IQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLK-AERENLLQTNRDLQFEKDT 1210
Cdd:TIGR00606 476 LDQELRKAERELsKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTqMEMLTKDKMDKDEQIRKIK 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1211 LRQGQEKLSasLEATLQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIKTcraiTDSECIQLLH 1290
Cdd:TIGR00606 556 SRHSDELTS--LLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEE----QLSSYEDKLF 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1291 EKESLAASERTLLAEKEELlsenriitEKLSKQSEEVARLEMGLNEKITYLTSEKEVAC---QKVAKLKKQQDSLLKEKS 1367
Cdd:TIGR00606 630 DVCGSQDEESDLERLKEEI--------EKSSKQRAMLAGATAVYSQFITQLTDENQSCCpvcQRVFQTEAELQEFISDLQ 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1368 ALELQNGDLLADRESSIKtigdlrrkydqEATNRRIVMQEKMKLLGN-IDALKKELQERKKENQELTsskcdlslllKEA 1446
Cdd:TIGR00606 702 SKLRLAPDKLKSTESELK-----------KKEKRRDEMLGLAPGRQSiIDLKEKEIPELRNKLQKVN----------RDI 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1447 QDAKKNLEKEHTSMiqakDNLNAELKTCccekNMLLRDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSL-YENN 1525
Cdd:TIGR00606 761 QRLKNDIEEQETLL----GTIMPEEESA----KVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVnQEKQ 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1526 KLHGRVVLLEEEIQRLRVCSEQlQTENFTLTQEKTNsEQKVEEIIKEKELlsAETAQLAANIETLKSDFAALSKSKLELQ 1605
Cdd:TIGR00606 833 EKQHELDTVVSKIELNRKLIQD-QQEQIQHLKSKTN-ELKSEKLQIGTNL--QRRQQFEEQLVELSTEVQSLIREIKDAK 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1606 ELHSCLTKILDDLRLNHEVALTERAE---VLQDNKNLLAEKREMMLRNEEALKEKEKLEESYFILQKEiSQLAQTNSHIS 1682
Cdd:TIGR00606 909 EQDSPLETFLEKDQQEKEELISSKETsnkKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKE-TELNTVNAQLE 987
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937390 1683 ANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNA--RLQNELDTLK 1760
Cdd:TIGR00606 988 ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEhqKLEENIDLIK 1067
|
890 900
....*....|....*....|....*.
gi 568937390 1761 ENNLKTVEELNKSKELLSVENQKMEE 1786
Cdd:TIGR00606 1068 RNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| |
