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Conserved domains on  [gi|578814670|ref|XP_006716212|]
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RNA-binding protein 48 isoform X2 [Homo sapiens]

Protein Classification

RNA-binding protein 48( domain architecture ID 10189584)

RNA-binding protein 48 (RBM48) is essential for the splicing of U12-type introns in both plants and animals

Gene Ontology:  GO:0003723
PubMed:  15853797|22278943|18515081
SCOP:  3000110

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RRM_RBM48 cd12442
RNA recognition motif (RRM) found in RNA-binding protein 48 (RBM48) and similar proteins; This ...
 36-135 5.16e-68

RNA recognition motif (RRM) found in RNA-binding protein 48 (RBM48) and similar proteins; This subfamily corresponds to the RRM of RBM48, a putative RNA-binding protein of unknown function. It contains one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain).


:

Pssm-ID: 409876 [Multi-domain]  Cd Length: 100  Bit Score: 209.37  E-value: 5.16e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578814670  36 VKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFMNLQSARTAKRKMDEQSFFGG 115
Cdd:cd12442    1 VKVYTVNQESRYLLVQGVPALGVEEELLKLFSLYGTIEEYRILDEYPCEEFTEVYLIKFERIQSARFAKRKLDDHSFFGG 80

                         90       100
                 ....*....|....*....|
gi 578814670 116 LLHVCYAPEFETVEETRKKL 135
Cdd:cd12442   81 ILHVCYAPEYETVEDTREKL 100
 
Name Accession Description Interval E-value
RRM_RBM48 cd12442
RNA recognition motif (RRM) found in RNA-binding protein 48 (RBM48) and similar proteins; This ...
 36-135 5.16e-68

RNA recognition motif (RRM) found in RNA-binding protein 48 (RBM48) and similar proteins; This subfamily corresponds to the RRM of RBM48, a putative RNA-binding protein of unknown function. It contains one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain).


Pssm-ID: 409876 [Multi-domain]  Cd Length: 100  Bit Score: 209.37  E-value: 5.16e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578814670  36 VKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFMNLQSARTAKRKMDEQSFFGG 115
Cdd:cd12442    1 VKVYTVNQESRYLLVQGVPALGVEEELLKLFSLYGTIEEYRILDEYPCEEFTEVYLIKFERIQSARFAKRKLDDHSFFGG 80

                         90       100
                 ....*....|....*....|
gi 578814670 116 LLHVCYAPEFETVEETRKKL 135
Cdd:cd12442   81 ILHVCYAPEYETVEDTREKL 100
 
Name Accession Description Interval E-value
RRM_RBM48 cd12442
RNA recognition motif (RRM) found in RNA-binding protein 48 (RBM48) and similar proteins; This ...
 36-135 5.16e-68

RNA recognition motif (RRM) found in RNA-binding protein 48 (RBM48) and similar proteins; This subfamily corresponds to the RRM of RBM48, a putative RNA-binding protein of unknown function. It contains one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain).


Pssm-ID: 409876 [Multi-domain]  Cd Length: 100  Bit Score: 209.37  E-value: 5.16e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578814670  36 VKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFMNLQSARTAKRKMDEQSFFGG 115
Cdd:cd12442    1 VKVYTVNQESRYLLVQGVPALGVEEELLKLFSLYGTIEEYRILDEYPCEEFTEVYLIKFERIQSARFAKRKLDDHSFFGG 80

                         90       100
                 ....*....|....*....|
gi 578814670 116 LLHVCYAPEFETVEETRKKL 135
Cdd:cd12442   81 ILHVCYAPEYETVEDTREKL 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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