NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|578817137|ref|XP_006717052|]
View 

olfactomedin-like protein 2A isoform X1 [Homo sapiens]

Protein Classification

olfactomedin domain-containing protein( domain architecture ID 10490292)

olfactomedin domain-containing protein adopts a five-bladed beta-propeller structure, similar to gliomedin that interacts with neuronal cell adhesion molecules such as neurofascin

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
OLF pfam02191
Olfactomedin-like domain;
363-614 1.17e-123

Olfactomedin-like domain;


:

Pssm-ID: 460482  Cd Length: 246  Bit Score: 365.32  E-value: 1.17e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137  363 LRAVDPPVRHHSYGRHEGAWMKDPAARDDRIYVT-NYYYGNSLVEFRNLENFKQGRWSNMYKLPYNWIGTGHVVYQGAFY 441
Cdd:pfam02191   1 LVSVSKPVTVKLSGGKYGAWMKDPLPPSDKIYVTdRGTSGNTLREYASLDDFKNGSPSKKYKLPYPWQGTGHVVYNGSLY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137  442 YNRAFTKNIIKYDLRQRFVASWALLPDVVYEDTTPWKWRGHSDIDFAVDESGLWVIYPAVDDRdeaqpEVIVLSRLDPGD 521
Cdd:pfam02191  81 YNKYNSRNIVKYDLTTRTVAARRVLPGAGYNNRFPYSWGGHTDIDLAVDENGLWVIYATEENE-----GNIVVSKLDPET 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137  522 LSVhrETTWKTRLRRNSYGNCFLVCGILYAVDTYNQQEGQVAYAFDTHTGTDARPQLPFLNEHAYTTQIDYNPKERVLYA 601
Cdd:pfam02191 156 LEV--EQTWNTSYPKRSAGNAFMVCGVLYAVRSVNTRREEIFYAFDTYTGKEEAVSIPFPNRYGKISMLDYNPRDKKLYA 233

                         250
                  ....*....|...
gi 578817137  602 WDNGHQLTYTLHF 614
Cdd:pfam02191 234 WDDGYQVTYPVTF 246
 
Name Accession Description Interval E-value
OLF pfam02191
Olfactomedin-like domain;
363-614 1.17e-123

Olfactomedin-like domain;


Pssm-ID: 460482  Cd Length: 246  Bit Score: 365.32  E-value: 1.17e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137  363 LRAVDPPVRHHSYGRHEGAWMKDPAARDDRIYVT-NYYYGNSLVEFRNLENFKQGRWSNMYKLPYNWIGTGHVVYQGAFY 441
Cdd:pfam02191   1 LVSVSKPVTVKLSGGKYGAWMKDPLPPSDKIYVTdRGTSGNTLREYASLDDFKNGSPSKKYKLPYPWQGTGHVVYNGSLY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137  442 YNRAFTKNIIKYDLRQRFVASWALLPDVVYEDTTPWKWRGHSDIDFAVDESGLWVIYPAVDDRdeaqpEVIVLSRLDPGD 521
Cdd:pfam02191  81 YNKYNSRNIVKYDLTTRTVAARRVLPGAGYNNRFPYSWGGHTDIDLAVDENGLWVIYATEENE-----GNIVVSKLDPET 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137  522 LSVhrETTWKTRLRRNSYGNCFLVCGILYAVDTYNQQEGQVAYAFDTHTGTDARPQLPFLNEHAYTTQIDYNPKERVLYA 601
Cdd:pfam02191 156 LEV--EQTWNTSYPKRSAGNAFMVCGVLYAVRSVNTRREEIFYAFDTYTGKEEAVSIPFPNRYGKISMLDYNPRDKKLYA 233

                         250
                  ....*....|...
gi 578817137  602 WDNGHQLTYTLHF 614
Cdd:pfam02191 234 WDDGYQVTYPVTF 246
OLF smart00284
Olfactomedin-like domains;
361-614 1.52e-71

Olfactomedin-like domains;


Pssm-ID: 128580  Cd Length: 255  Bit Score: 231.26  E-value: 1.52e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137   361 GTLRAVDPPVRHHSYGRHE-GAWMKDPAA---RDDRIYV--TNYYYGNSLVEFRNLENFKQGRWSNMYKLPYNWIGTGHV 434
Cdd:smart00284   1 GGLAGISKPVTLQTSWKGKsGAWMKDPLWnttKKSLYWYmpLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137   435 VYQGAFYYNRAFTKNIIKYDLRQRFVASWALLPDVVYEDTTPWKWRGHSDIDFAVDESGLWVIYPAVDDRDEaqpevIVL 514
Cdd:smart00284  81 VYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK-----IVI 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137   515 SRLDPGDLSVhrETTWKTRLRRNSYGNCFLVCGILYAVDTYNQQEGQVAYAFDTHTGTDARPQLPFLNEHAYTTQIDYNP 594
Cdd:smart00284 156 SKLNPATLTI--ENTWITTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNP 233

                          250       260
                   ....*....|....*....|
gi 578817137   595 KERVLYAWDNGHQLTYTLHF 614
Cdd:smart00284 234 NDRKLYAWNNGHLVHYDIAL 253
 
Name Accession Description Interval E-value
OLF pfam02191
Olfactomedin-like domain;
363-614 1.17e-123

Olfactomedin-like domain;


Pssm-ID: 460482  Cd Length: 246  Bit Score: 365.32  E-value: 1.17e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137  363 LRAVDPPVRHHSYGRHEGAWMKDPAARDDRIYVT-NYYYGNSLVEFRNLENFKQGRWSNMYKLPYNWIGTGHVVYQGAFY 441
Cdd:pfam02191   1 LVSVSKPVTVKLSGGKYGAWMKDPLPPSDKIYVTdRGTSGNTLREYASLDDFKNGSPSKKYKLPYPWQGTGHVVYNGSLY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137  442 YNRAFTKNIIKYDLRQRFVASWALLPDVVYEDTTPWKWRGHSDIDFAVDESGLWVIYPAVDDRdeaqpEVIVLSRLDPGD 521
Cdd:pfam02191  81 YNKYNSRNIVKYDLTTRTVAARRVLPGAGYNNRFPYSWGGHTDIDLAVDENGLWVIYATEENE-----GNIVVSKLDPET 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137  522 LSVhrETTWKTRLRRNSYGNCFLVCGILYAVDTYNQQEGQVAYAFDTHTGTDARPQLPFLNEHAYTTQIDYNPKERVLYA 601
Cdd:pfam02191 156 LEV--EQTWNTSYPKRSAGNAFMVCGVLYAVRSVNTRREEIFYAFDTYTGKEEAVSIPFPNRYGKISMLDYNPRDKKLYA 233

                         250
                  ....*....|...
gi 578817137  602 WDNGHQLTYTLHF 614
Cdd:pfam02191 234 WDDGYQVTYPVTF 246
OLF smart00284
Olfactomedin-like domains;
361-614 1.52e-71

Olfactomedin-like domains;


Pssm-ID: 128580  Cd Length: 255  Bit Score: 231.26  E-value: 1.52e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137   361 GTLRAVDPPVRHHSYGRHE-GAWMKDPAA---RDDRIYV--TNYYYGNSLVEFRNLENFKQGRWSNMYKLPYNWIGTGHV 434
Cdd:smart00284   1 GGLAGISKPVTLQTSWKGKsGAWMKDPLWnttKKSLYWYmpLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137   435 VYQGAFYYNRAFTKNIIKYDLRQRFVASWALLPDVVYEDTTPWKWRGHSDIDFAVDESGLWVIYPAVDDRDEaqpevIVL 514
Cdd:smart00284  81 VYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK-----IVI 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578817137   515 SRLDPGDLSVhrETTWKTRLRRNSYGNCFLVCGILYAVDTYNQQEGQVAYAFDTHTGTDARPQLPFLNEHAYTTQIDYNP 594
Cdd:smart00284 156 SKLNPATLTI--ENTWITTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNP 233

                          250       260
                   ....*....|....*....|
gi 578817137   595 KERVLYAWDNGHQLTYTLHF 614
Cdd:smart00284 234 NDRKLYAWNNGHLVHYDIAL 253
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH