|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
980-1561 |
1.06e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 99.63 E-value: 1.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 980 LQEELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLRE-ELEALRRQKGAREAEVLLLQQRVAALAEEK 1058
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEaELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1059 SRAQEkvtEKEVVKLQNDpQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAA 1138
Cdd:COG1196 298 ARLEQ---DIARLEERRR-ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1139 TEREVSDLTRQYEDEAAKARASQREKTELLRKIWALE-EENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKYRG 1217
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEaLLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1218 AEEQLRSYQSELEALRRRGPQVEVK------EVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEiyqlkKEIQA 1291
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAAlaelleELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA-----GAVAV 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1292 LKDTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKkqvdLERERASQEEQIARKEEELSRVKERVVQQEVVRY 1371
Cdd:COG1196 529 LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK----AGRATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1372 EEEP-GLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEA 1450
Cdd:COG1196 605 ASDLrEADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1451 REKVTHtqkvvlqqdpQQAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVLSESVQVEKGDTEQEIQ 1530
Cdd:COG1196 685 AERLAE----------EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
570 580 590
....*....|....*....|....*....|.
gi 578828140 1531 RLKSSLEEEsrskrELDVEVSRLEARLSELE 1561
Cdd:COG1196 755 ELPEPPDLE-----ELERELERLEREIEALG 780
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
831-1550 |
2.69e-18 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 92.13 E-value: 2.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 831 RRSHVSKRARLQsPATKVKEEEAALAAKFTEVYAinrqrlqnLEFALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRK 910
Cdd:PTZ00121 1062 AKAHVGQDEGLK-PSYKDFDFDAKEDNRADEATE--------EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEE 1132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 911 ELDEETERRRQlenEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQ 990
Cdd:PTZ00121 1133 ARKAEDARKAE---EARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAE 1209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 991 LRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEV 1070
Cdd:PTZ00121 1210 EERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1071 VKLQNDPQLEA-----EYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSD 1145
Cdd:PTZ00121 1290 KKADEAKKAEEkkkadEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1146 LTRQYED----EAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEq 1221
Cdd:PTZ00121 1370 EKKKEEAkkkaDAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE- 1448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1222 LRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEI---VDKTRLIERCDLEIYQLKKEIQALKDTKPQ 1298
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAkkkADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1299 VQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLR 1378
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1379 AEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQ 1458
Cdd:PTZ00121 1609 AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1459 KV--VLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVlSESVQVEKGDtEQEIQRLKSSL 1536
Cdd:PTZ00121 1689 KAaeALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK-AEEAKKDEEE-KKKIAHLKKEE 1766
|
730
....*....|....
gi 578828140 1537 EEESRSKRELDVEV 1550
Cdd:PTZ00121 1767 EKKAEEIRKEKEAV 1780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1025-1635 |
4.61e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.15 E-value: 4.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1025 QLREELEALRRQkgAREAEvlllqqRVAALAEEksraqEKVTEKEVVKLQNDpQLEAEYQQLQEDHQRQDQLREKQEEEL 1104
Cdd:COG1196 197 ELERQLEPLERQ--AEKAE------RYRELKEE-----LKELEAELLLLKLR-ELEAELEELEAELEELEAELEELEAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1105 SFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQ 1184
Cdd:COG1196 263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1185 EKVREivrpdpKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRrgpqvEVKEVTKEVIkyktdpEMEKELQRL 1264
Cdd:COG1196 343 EEELE------EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE-----ELLEALRAAA------ELAAQLEEL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1265 REEIVDKTRLIERCDLEIYQLKKEIQALKDTKpqVQTKEVVQEILQFQEdpQTKEEVASLRAKLSEEQKKQVDLERERAS 1344
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEE--EEEEEALEEAAEEEA--ELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1345 QEEQIARKEEELSRVKERVVQQE-----VVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEEL 1419
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEgflegVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1420 ERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRK 1499
Cdd:COG1196 562 AIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVT 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1500 LAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENH 1579
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 578828140 1580 KLQLERQNLQLETRRLQSEI--NMAATETRDLRNMTVADSGTNHDSRLWSLERELDDL 1635
Cdd:COG1196 722 EEEALEEQLEAEREELLEELleEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
959-1653 |
8.39e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.50 E-value: 8.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 959 LEESFQQLQRTlAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLREE-LEALRRQK 1037
Cdd:TIGR02168 198 LERQLKSLERQ-AEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEkLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1038 GAREAEVLLLQQRVAALAEEKSRAQEKVTEKEvvklQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKE 1117
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQILR----ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1118 RAMAEGKITVKEVLKVE-----------------KDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAK 1180
Cdd:TIGR02168 353 LESLEAELEELEAELEElesrleeleeqletlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1181 VVVQEKVREIVRPDPKAES----------EVANLRLELVEQERKYRGAEEQLRSYQSELEALRR-----RGPQVEVKEVT 1245
Cdd:TIGR02168 433 AELKELQAELEELEEELEElqeelerleeALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlEGFSEGVKALL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1246 KEVIK-----------YKTDPEMEKELQRLREEIVDK--TRLIERCDLEIYQLKK---------EIQALKDTKPQVQTKE 1303
Cdd:TIGR02168 513 KNQSGlsgilgvlselISVDEGYEAAIEAALGGRLQAvvVENLNAAKKAIAFLKQnelgrvtflPLDSIKGTEIQGNDRE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1304 VVQEILQFQ---------------------------EDPQTKEEVA-SLRAKLS------------------EEQKKQVD 1337
Cdd:TIGR02168 593 ILKNIEGFLgvakdlvkfdpklrkalsyllggvlvvDDLDNALELAkKLRPGYRivtldgdlvrpggvitggSAKTNSSI 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1338 LERERAsqeeqIARKEEELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLE 1417
Cdd:TIGR02168 673 LERRRE-----IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1418 ELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLqqdpQQAREHALLRLQLEEEQHRRQLLEGELETLR 1497
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE----QLKEELKALREALDELRAELTLLNEEAANLR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1498 RKLAALEKAEVKEKVVLSESVQvEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREE 1577
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEE-QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578828140 1578 NHKLQLERQNLQLETRRLQSEINMAATETRDLRNMtvadsGTNHDSRLWSL-ERELDDLKRLSKDKDLEIDELQKRL 1653
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVR-----IDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRL 974
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
903-1409 |
8.64e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.00 E-value: 8.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 903 EEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQE 982
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE--LLAELARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 983 ELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQ 1062
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1063 EKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATERE 1142
Cdd:COG1196 397 ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1143 VSDLTRQYEDEAAKAR----ASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKYR-- 1216
Cdd:COG1196 477 AALAELLEELAEAAARllllLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEdd 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1217 GAEEQLRSYQSE----------LEALRRRGPQVEVKEVTKEVIKYKT----DPEMEKELQRLREEIVDKTRLIERCDLEI 1282
Cdd:COG1196 557 EVAAAAIEYLKAakagratflpLDKIRARAALAAALARGAIGAAVDLvasdLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1283 YQLKK-------------EIQALKDTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQI 1349
Cdd:COG1196 637 RRAVTlagrlrevtlegeGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1350 ARKEEELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRR 1409
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
771-1605 |
3.30e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 3.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 771 DSLSQMETKLKNQKNLLDEIASREQEVQKIcanSQQYQQAVKDYELEAEKLRSLLDLENGR-RSHVSKRARLQSPATKVK 849
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLKSL---ERQAEKAERYKELKAELRELELALLVLRlEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 850 EEEAALAAkftevyainrqRLQNLEFALNLLR-QQPEVEvthetlqrnrpdsgvEEAWKIRKELDEETERRRQLENEVKS 928
Cdd:TIGR02168 253 EELEELTA-----------ELQELEEKLEELRlEVSELE---------------EEIEELQKELYALANEISRLEQQKQI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 929 TQEEIWTLRNQGPQESVVRKEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYvvk 1008
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLDE--LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL--- 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1009 evlriepdRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQND-PQLEAEYQQLQ 1087
Cdd:TIGR02168 382 --------ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQ 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1088 EDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQR----- 1162
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvde 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1163 -------------------EKTELLRKIWALEEENAK---------VVVQEKVREIVRPDPKAESEVANLRLELVEQERK 1214
Cdd:TIGR02168 534 gyeaaieaalggrlqavvvENLNAAKKAIAFLKQNELgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPK 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1215 YRGAEEQL-------RSYQSELEALRRRGPQVEVkeVTKE--------VIKYKTDPEMEKELQRlREEIVDKTRLIERCD 1279
Cdd:TIGR02168 614 LRKALSYLlggvlvvDDLDNALELAKKLRPGYRI--VTLDgdlvrpggVITGGSAKTNSSILER-RREIEELEEKIEELE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1280 LEIYQLKKEIQALKDTKPQVQTKEV---VQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEEL 1356
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEqlrKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1357 SRVKERVVQQEVVRYEeepgLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERErqaRREAEREVQRL 1436
Cdd:TIGR02168 771 EEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR---IAATERRLEDL 843
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1437 QQRLAALEQEEAEAREKVTHTQkvvlQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKaevkekvvlse 1516
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIEELE----ELIEELESELEALLNERASLEEALALLRSELEELSEELRELES----------- 908
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1517 svqvEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEfhnsksSKELDFLREENHKLQLERQNLQLETRRLQ 1596
Cdd:TIGR02168 909 ----KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY------SLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
890
....*....|....*
gi 578828140 1597 SEI------NMAATE 1605
Cdd:TIGR02168 979 NKIkelgpvNLAAIE 993
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
774-1605 |
1.22e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 86.66 E-value: 1.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 774 SQMETKLKNQKNLLDEIASREQEVQKICANSQQYQQAVKDYELEAEKLRSLLDlENGRRSHVSKRARLQSPATKVKEEEA 853
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLK-EKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 854 ALAAKftevyainRQRLQNLEFALNLLRQQ-PEVEVTHETLQRNRPDSGVEEAWKIRKELDEETERRRQLENEVKSTQEE 932
Cdd:TIGR02169 245 QLASL--------EEELEKLTEEISELEKRlEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 933 IWTLRNQGPQESVVRKEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALE---QETRDGGQEYVVK- 1008
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEE--LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDkefAETRDELKDYREKl 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1009 EVLRIEPDRAQAdEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQE 1088
Cdd:TIGR02169 395 EKLKREINELKR-ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1089 DHQRQDQLrekqEEELSFLQDKLKRLEKERAMAEGKI-------------------TVKEVLKVEKDAATEREVSDLTRQ 1149
Cdd:TIGR02169 474 LKEEYDRV----EKELSKLQRELAEAEAQARASEERVrggraveevlkasiqgvhgTVAQLGSVGERYATAIEVAAGNRL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1150 ----YEDEAAKARASQREKTELLRKiwaleeenAKVVVQEKVREIVRP-DPKAESEVANLRLELVEQERKYRGAEEQ-LR 1223
Cdd:TIGR02169 550 nnvvVEDDAVAKEAIELLKRRKAGR--------ATFLPLNKMRDERRDlSILSEDGVIGFAVDLVEFDPKYEPAFKYvFG 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1224 S--YQSELEALRRRGPQVEVKEVTKEVIK---------------YKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLK 1286
Cdd:TIGR02169 622 DtlVVEDIEAARRLMGKYRMVTLEGELFEksgamtggsraprggILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIE 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1287 KEI----QALKDTKPQVQTKEVVQEILQfQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKER 1362
Cdd:TIGR02169 702 NRLdelsQELSDASRKIGEIEKEIEQLE-QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1363 VvqqevvryeEEPglraEASAFAESIDVELRQIDKLRAELRRLQRRrtelerqleelererqaRREAEREVQRLQQRLAA 1442
Cdd:TIGR02169 781 L---------NDL----EARLSHSRIPEIQAELSKLEEEVSRIEAR-----------------LREIEQKLNRLTLEKEY 830
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1443 LEQEEAEAREKVTHTQkvvLQQDPQQAREHaLLRLQLEEEQHRRQLLEGELETLRRKLAALEKaEVKEkvvlsesVQVEK 1522
Cdd:TIGR02169 831 LEKEIQELQEQRIDLK---EQIKSIEKEIE-NLNGKKEELEEELEELEAALRDLESRLGDLKK-ERDE-------LEAQL 898
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1523 GDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEfHNSKSSKELDFLREENHKLQLERQNLQLETRRLQsEINMA 1602
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE-DPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE-PVNML 976
|
...
gi 578828140 1603 ATE 1605
Cdd:TIGR02169 977 AIQ 979
|
|
| SH3_10 |
pfam17902 |
SH3 domain; This entry represents an SH3 domain. |
403-466 |
3.27e-16 |
|
SH3 domain; This entry represents an SH3 domain.
Pssm-ID: 407754 Cd Length: 65 Bit Score: 74.61 E-value: 3.27e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578828140 403 PLKYRRETPLKPIPVEALCDFEGEQGLISRGYSYTLQKNNG-ESWELMDSAGNKLIAPAVCFVIP 466
Cdd:pfam17902 1 PLKQRRSPVTRPIPVKALCDYKQGEVTVEKGEECTLLDNSDrEKWKVQTSSGVEKLVPSVCFLIP 65
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
709-1506 |
1.08e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 1.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 709 DLERQEAEVHKLGQRFNNLRQQVERrAQSLQSAKAAYEH---------FHRGHDHVLQFLVSIPSYEPQETDSLSQMETK 779
Cdd:TIGR02168 187 NLDRLEDILNELERQLKSLERQAEK-AERYKELKAELRElelallvlrLEELREELEELQEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 780 LKNQKNLLDEIASREQEVQKICANSQQYQQAVKDYELEAEKLR-SLLDLENGRRSHVSKRARLQSPATKVKEEEAALAAK 858
Cdd:TIGR02168 266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILReRLANLERQLEELEAQLEELESKLDELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 859 FTEVyainRQRLQNLEFALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRN 938
Cdd:TIGR02168 346 LEEL----KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 939 QGPQESVVRKEVLKKVpdpvLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQE-------------- 1004
Cdd:TIGR02168 422 EIEELLKKLEEAELKE----LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERElaqlqarldslerl 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1005 ------------YVVKEVLRIEPDRAQADEVLQLREELE-ALRRQKGAREAEVLL--LQQRVAALAEEKSRAQEKVT--E 1067
Cdd:TIGR02168 498 qenlegfsegvkALLKNQSGLSGILGVLSELISVDEGYEaAIEAALGGRLQAVVVenLNAAKKAIAFLKQNELGRVTflP 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1068 KEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFL-----------------QDKLKRLEK---------ERAMA 1121
Cdd:TIGR02168 578 LDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnaLELAKKLRPgyrivtldgDLVRP 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1122 EGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEkvreivrpdPKAESEV 1201
Cdd:TIGR02168 658 GGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL---------EELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1202 ANLRLELVEQERKYRGAEEQLRSYQSELEALrrrgpQVEVKEVTKEVIKYKTD-PEMEKELQRLREEIvdkTRLIERCDL 1280
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTEL-----EAEIEELEERLEEAEEElAEAEAEIEELEAQI---EQLKEELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1281 EIYQLKKEIQALKDTKPQVQTKEVVQEILQFQEDpQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVK 1360
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLERRIA-ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1361 ERVVQQEVVRYEeepgLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELErqleelererqaRREAEREVQRLQQRL 1440
Cdd:TIGR02168 880 NERASLEEALAL----LRSELEELSEELRELESKRSELRRELEELREKLAQLE------------LRLEGLEVRIDNLQE 943
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578828140 1441 AALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRL-------------QLEEEQHRRQLLEGELETLRRKLAALEKA 1506
Cdd:TIGR02168 944 RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKikelgpvnlaaieEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1000-1590 |
2.79e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.02 E-value: 2.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1000 DGGQEYVVKEVLRIEPDRAQADEVLQLREELEALRRQKG---AREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQND 1076
Cdd:PRK03918 144 DESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEkfiKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1077 PQLEAEYQQLQEDHQRQDQLR---EKQEEELSFLQDKLKRLEKERAMAEGKIT-----VKEVLKVEKDAATEREVSDLTR 1148
Cdd:PRK03918 224 EKLEKEVKELEELKEEIEELEkelESLEGSKRKLEEKIRELEERIEELKKEIEeleekVKELKELKEKAEEYIKLSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1149 QYEDEAAKArasQREKTELLRKIWALEEENAKVvvqEKVREIVRPDPKAESEVANLRLELVEQERKYrgaeEQLRSYQSE 1228
Cdd:PRK03918 304 EYLDELREI---EKRLSRLEEEINGIEERIKEL---EEKEERLEELKKKLKELEKRLEELEERHELY----EEAKAKKEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1229 LEALRRRGPQVEVKEVTKEVikyktdPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQ------TK 1302
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKEL------EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgrelTE 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1303 EVVQEILQfqedpQTKEEVASLRAKLSEEQKKQVDLeRERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLRAEAS 1382
Cdd:PRK03918 448 EHRKELLE-----EYTAELKRIEKELKEIEEKERKL-RKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELE 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1383 AFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVthtqkvvL 1462
Cdd:PRK03918 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER-------L 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1463 QQDPQQAREHALLR---LQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVLSEsvqVEKGDTEQEIQRLKSSLEEE 1539
Cdd:PRK03918 595 KELEPFYNEYLELKdaeKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE---LEKKYSEEEYEELREEYLEL 671
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 578828140 1540 SRskreldvEVSRLEARLSELEFHNSKSSKELDFLREENHKLQLERQNLQL 1590
Cdd:PRK03918 672 SR-------ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1006-1669 |
1.30e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1006 VVKEVLRIEPDRAQAdevlqlrEELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQND-PQLEAEYQ 1084
Cdd:TIGR02169 196 KRQQLERLRREREKA-------ERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEiSELEKRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1085 QLQED-HQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKItvkevlkvekdAATEREVSDLTRQYEDEAAKARASQRE 1163
Cdd:TIGR02169 269 EIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSI-----------AEKERELEDAEERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1164 KTELLRKIwalEEENAKVvvqEKVREIVRpdpKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRgpqvevke 1243
Cdd:TIGR02169 338 IEELEREI---EEERKRR---DKLTEEYA---ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE-------- 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1244 vtkevikyktDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEilqfQEDPQTKEEVAS 1323
Cdd:TIGR02169 401 ----------INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE----WKLEQLAADLSK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1324 LRAKLSEEQKKQVDLERERASQEEQIARKE-------------------------------EELSRVKER---------- 1362
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRELAEAEaqaraseervrggraveevlkasiqgvhgtvAQLGSVGERyataievaag 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1363 ------VVQQEVV---------------------------RYEEEPGLRAEASAFA------------------------ 1385
Cdd:TIGR02169 547 nrlnnvVVEDDAVakeaiellkrrkagratflplnkmrdeRRDLSILSEDGVIGFAvdlvefdpkyepafkyvfgdtlvv 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1386 ESIDVELRQIDKLR-----AEL----------RRLQRRRTELERQLEELERERQARREA-EREVQRLQQRLAALEQEEAE 1449
Cdd:TIGR02169 627 EDIEAARRLMGKYRmvtleGELfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGlKRELSSLQSELRRIENRLDE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1450 AREKVTHTQKVV--LQQDPQQ-AREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEkAEVKEKVVLSESVQVEKGDTE 1526
Cdd:TIGR02169 707 LSQELSDASRKIgeIEKEIEQlEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE-ARIEELEEDLHKLEEALNDLE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1527 QEIQRlkSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEINMAATET 1606
Cdd:TIGR02169 786 ARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578828140 1607 RDLrnmtvADSGTNHDSRLWSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQRENHLRR 1669
Cdd:TIGR02169 864 EEL-----EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
709-1268 |
2.88e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 2.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 709 DLERQEAEVHKLGQRFNNLRQQVERRAQSLQSAKAAYEhfhrghdhvlqflvsipsyepQETDSLSQMETKLKNQKNLLD 788
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEY---------------------ELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 789 EIASREQEVQKicansQQYQQAVKDYELEAEKLRSLLDLENGRRSHVSKRARLQSPATKVKEEEAALAAKFTEVYAINRQ 868
Cdd:COG1196 313 ELEERLEELEE-----ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 869 RLQNLEFALNLLRQQPEVEVTHETLQRNRpdsgveeawkirKELDEETERRRQLENEVKSTQEEIwtlrnQGPQESVVRK 948
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERL------------ERLEEELEELEEALAELEEEEEEE-----EEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 949 EVLKKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQ-ETRDGGQEYVVKEVLRIEPDRAQADEVLQLR 1027
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEaEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1028 EELEALRRQKGAREAEVLL------LQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQR----QDQLR 1097
Cdd:COG1196 531 GVEAAYEAALEAALAAALQnivvedDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVdlvaSDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1098 EKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEE 1177
Cdd:COG1196 611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1178 NAKVVVQEKVREIvrpdpKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPEM 1257
Cdd:COG1196 691 EELELEEALLAEE-----EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
570
....*....|.
gi 578828140 1258 EKELQRLREEI 1268
Cdd:COG1196 766 ERELERLEREI 776
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
956-1610 |
6.36e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 6.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 956 DPVLEESFQQLQRTLAEEQHKnqllqEELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVL-QLREELEALR 1034
Cdd:TIGR02169 190 DLIIDEKRQQLERLRREREKA-----ERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELeKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1035 RQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQdqlREKQEEELSFLQDKLKRL 1114
Cdd:TIGR02169 265 KRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEER---LAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1115 EKEraMAEGKITVKEVLKVEKDAATEREvsDLTRQYEDEAAKARASQREKTELLRKIWALeeenakvvvQEKVREIVRPD 1194
Cdd:TIGR02169 342 ERE--IEEERKRRDKLTEEYAELKEELE--DLRAELEEVDKEFAETRDELKDYREKLEKL---------KREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1195 PKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALrrrgpQVEVKEVTKEVIKYKTDPE-MEKELQRLREEIVDKTR 1273
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK-----ALEIKKQEWKLEQLAADLSkYEQELYDLKEEYDRVEK 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1274 LIERCDLEIYQLKKEIQALKDTKPQVQTKE------------VVQEILQFQEDPQTKEEVAS------------LRAKLS 1329
Cdd:TIGR02169 484 ELSKLQRELAEAEAQARASEERVRGGRAVEevlkasiqgvhgTVAQLGSVGERYATAIEVAAgnrlnnvvveddAVAKEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1330 EEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQ---EVVRYEEE-------------------------------- 1374
Cdd:TIGR02169 564 IELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGfavDLVEFDPKyepafkyvfgdtlvvedieaarrlmgkyrmvt 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1375 --------------------------PGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERqarRE 1428
Cdd:TIGR02169 644 legelfeksgamtggsraprggilfsRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI---GE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1429 AEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQA--------REHALLRLQLEEEQHRRQLLEGELETLRRKL 1500
Cdd:TIGR02169 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKelearieeLEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1501 AALEKAEVKEKVVLSE------SVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFL 1574
Cdd:TIGR02169 801 SKLEEEVSRIEARLREieqklnRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
|
730 740 750
....*....|....*....|....*....|....*.
gi 578828140 1575 REENHKLQLERQNLQLETRRLQSEINMAATETRDLR 1610
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1017-1355 |
7.40e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 7.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1017 RAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEkevvklqndpqLEAEYQQLQEDHQRQDQL 1096
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE-----------IEKEIEQLEQEEEKLKER 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1097 REKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATE-----------REVSDLTRQYEDEAAKARASQREKT 1165
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNdlearlshsriPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1166 ELLRKIwALEEENAKVVVQEKVREIVRPDPKAES---EVANLRLELVEQERKYRGAEEQLRSYQSELEALRRrgpqvEVK 1242
Cdd:TIGR02169 819 QKLNRL-TLEKEYLEKEIQELQEQRIDLKEQIKSiekEIENLNGKKEELEEELEELEAALRDLESRLGDLKK-----ERD 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1243 EVTKEVikyktdPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQT--------KEVVQEILQFQED 1314
Cdd:TIGR02169 893 ELEAQL------RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEipeeelslEDVQAELQRVEEE 966
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 578828140 1315 PQTKEEV--------ASLRAKLSEEQKKQVDLERERASQEEQIARKEEE 1355
Cdd:TIGR02169 967 IRALEPVnmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
599-1292 |
7.82e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 7.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 599 LRTRVEDTNRKYEHLLQLL-DLAQEKVDVANRLEKSLQQSWELLATHENHLNQDDTVPES-----------SRVLDSKGQ 666
Cdd:TIGR02168 279 LEEEIEELQKELYALANEIsRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEElaeleekleelKEELESLEA 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 667 ELAAMACELQAQKSLLGEVEQNLQAAKQCSSTLASRFQEHCPDLERQEAEVHKLGQRFNNLRQQVERRAQSLQSAK---- 742
Cdd:TIGR02168 359 ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkel 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 743 -AAYEHFHRGHDHVLQFLVSIPSYEPQETDSLSQMETKLKNQKNLLDEIASREQEVQKICANSQQYQQAVKDYELEAEKL 821
Cdd:TIGR02168 439 qAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 822 RSLLDL-------ENGRRSHVSK--RARLQSPAtkVKEEEAALAAkfteVYAINRQRLQNLEFALNLLRQQPEVEVTHET 892
Cdd:TIGR02168 519 SGILGVlselisvDEGYEAAIEAalGGRLQAVV--VENLNAAKKA----IAFLKQNELGRVTFLPLDSIKGTEIQGNDRE 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 893 LQRNRP------DSGVEEAWKIRK-------------ELDEETERRRQLENEVK--STQEEIWTlrnqgPQESVVRKEVL 951
Cdd:TIGR02168 593 ILKNIEgflgvaKDLVKFDPKLRKalsyllggvlvvdDLDNALELAKKLRPGYRivTLDGDLVR-----PGGVITGGSAK 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 952 KKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDggqeyvvkevLRIEPDRAQaDEVLQLREELE 1031
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ----------LRKELEELS-RQISALRKDLA 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1032 ALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEvvklQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKL 1111
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE----EELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1112 KRLEKERAMAEGKITVKEvlkvEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIV 1191
Cdd:TIGR02168 813 TLLNEEAANLRERLESLE----RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1192 RpdPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRR--GPQVEVKEVTKEV-IKYKTDPEMEKELQRLREEi 1268
Cdd:TIGR02168 889 L--ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRleGLEVRIDNLQERLsEEYSLTLEEAEALENKIED- 965
|
730 740
....*....|....*....|....
gi 578828140 1269 vdktrLIERCDLEIYQLKKEIQAL 1292
Cdd:TIGR02168 966 -----DEEEARRRLKRLENKIKEL 984
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
959-1601 |
4.19e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.99 E-value: 4.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 959 LEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLRE-ELEALRRQK 1037
Cdd:TIGR00618 251 AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMrSRAKLLMKR 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1038 GAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDpQLEAEYQQLQEDHQRQDQLrEKQEEELSFLQDKLKRLEKE 1117
Cdd:TIGR00618 331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIRE-ISCQQHTLTQHIHTLQQQK-TTLTQKLQSLCKELDILQRE 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1118 RAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKA 1197
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRK 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1198 ESEVANLRLELVEQERKYrgaEEQLRSYQSELEALRRRGP-QVEVKEVTKEVIKYKTDPE-MEKELQRLREEIVDKTRLI 1275
Cdd:TIGR00618 489 KAVVLARLLELQEEPCPL---CGSCIHPNPARQDIDNPGPlTRRMQRGEQTYAQLETSEEdVYHQLTSERKQRASLKEQM 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1276 ERCDLEIYQLKKEIQALKDTKPQVQTKEvvqEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEE 1355
Cdd:TIGR00618 566 QEIQQSFSILTQCDNRSKEDIPNLQNIT---VRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELA 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1356 LSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQR 1435
Cdd:TIGR00618 643 LKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1436 LQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQ-------HRRQLLEGELETLRRKLA------A 1502
Cdd:TIGR00618 723 IENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVtaalqtgAELSHLAAEIQFFNRLREedthllK 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1503 LEKAEVKEKVVLSESV-QVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENHKL 1581
Cdd:TIGR00618 803 TLEAEIGQEIPSDEDIlNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGIN 882
|
650 660
....*....|....*....|
gi 578828140 1582 QLERQNLQLETRRLQSEINM 1601
Cdd:TIGR00618 883 QIKIQFDGDALIKFLHEITL 902
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1050-1407 |
1.30e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1050 RVAALAEEKSRAQEKVTEKEVVKLQndpqLEAEYQQLQEDHQRQDQLREKQEEELSF--LQDKLKRLEKERAMAEGKITV 1127
Cdd:TIGR02169 161 EIAGVAEFDRKKEKALEELEEVEEN----IERLDLIIDEKRQQLERLRREREKAERYqaLLKEKREYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1128 KEVLKVEKDAAT-EREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAkVVVQEKVREIVRPDPKAESEVANLRL 1206
Cdd:TIGR02169 237 RQKEAIERQLASlEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-LRVKEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1207 ELVEQERKYRGAEEQLRSYQSELEALRRR--GPQVEVKEVTKEVIKYKTD--------PEMEKELQRLREEIVDKTRLIE 1276
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREieEERKRRDKLTEEYAELKEEledlraelEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1277 RCDLEIYQLKKEIQALKDTKPQVQtkevvqeilqfqedpqtkEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEEL 1356
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLS------------------EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 578828140 1357 SRVKERV--VQQEVVRYEEEpglraeasafaesidvelrqIDKLRAELRRLQR 1407
Cdd:TIGR02169 458 EQLAADLskYEQELYDLKEE--------------------YDRVEKELSKLQR 490
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
917-1437 |
1.70e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.77 E-value: 1.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 917 ERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPD-PVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALE 995
Cdd:PRK03918 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKElEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 996 QETRDggQEYVVKEVLRIEPDraqADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKlQN 1075
Cdd:PRK03918 273 KEIEE--LEEKVKELKELKEK---AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK-KK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1076 DPQLEAEYQQLQEDHQRQDQLREKQEEeLSFLQDKLKRLEKERAMAEGKITVKEVLKVEKD--------AATEREVSDLT 1147
Cdd:PRK03918 347 LKELEKRLEELEERHELYEEAKAKKEE-LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEiskitariGELKKEIKELK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1148 RQYED-EAAKARA-------SQREKTELLRKiWALEEENakvvVQEKVREIVRPDPKAESEVANLRLELVEQER--KYRG 1217
Cdd:PRK03918 426 KAIEElKKAKGKCpvcgrelTEEHRKELLEE-YTAELKR----IEKELKEIEEKERKLRKELRELEKVLKKESEliKLKE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1218 AEEQLRSYQSELEALRR----------RGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERcdlEIYQLKK 1287
Cdd:PRK03918 501 LAEQLKELEEKLKKYNLeelekkaeeyEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEE---ELAELLK 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1288 EIQALKDTkpqvQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQE 1367
Cdd:PRK03918 578 ELEELGFE----SVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1368 VvRYEEEPGLRAEASAFAESidvelRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQ 1437
Cdd:PRK03918 654 K-KYSEEEYEELREEYLELS-----RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1207-1596 |
9.41e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.17 E-value: 9.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1207 ELVEQERKYRGAEEQLRSYQSELEALRRRgpQVEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLK 1286
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAE--LEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1287 KEIQALKDTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQ 1366
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1367 EVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAE-------------LRRLQRRRTELERQLEELERERQARREAEREV 1433
Cdd:COG4717 240 ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlgllaLLFLLLAREKASLGKEAEELQALPALEELEEE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1434 QRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEE-EQHRRQLLE----GELETLRRKLAALEKAEV 1508
Cdd:COG4717 320 ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEElEQEIAALLAeagvEDEEELRAALEQAEEYQE 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1509 KE--------------KVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEfhnskSSKELDFL 1574
Cdd:COG4717 400 LKeeleeleeqleellGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE-----EDGELAEL 474
|
410 420
....*....|....*....|..
gi 578828140 1575 REENHKLQLERQNLQLETRRLQ 1596
Cdd:COG4717 475 LQELEELKAELRELAEEWAALK 496
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
909-1650 |
1.06e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.52 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 909 RKELDEETERRRQLENEV------KSTQEEIwtLRNQGPQESVVRKEVLKKvpDPVLEE------SFQQLQ-RTLAEEQH 975
Cdd:pfam15921 134 RRESQSQEDLRNQLQNTVheleaaKCLKEDM--LEDSNTQIEQLRKMMLSH--EGVLQEirsilvDFEEASgKKIYEHDS 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 976 KNQLLQEEL-EALQLQLRALEQE-TRDGGQEYVVKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAA 1053
Cdd:pfam15921 210 MSTMHFRSLgSAISKILRELDTEiSYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASS 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1054 laeEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITvkevlkv 1133
Cdd:pfam15921 290 ---ARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELT------- 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1134 ekDAATER-EVSDLTRQYEDEAAKARAS--QREKTELLRKiwaleEENAKVVVQEKVREIVRPDPKAESEVANLRLELVE 1210
Cdd:pfam15921 360 --EARTERdQFSQESGNLDDQLQKLLADlhKREKELSLEK-----EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLE 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1211 QERKYRGAE------EQLRSYQSELEALRRRGP---QVE-VKEVTKEVIKYKTDPEM-----EKELQRLREEIVDKTRLI 1275
Cdd:pfam15921 433 ALLKAMKSEcqgqmeRQMAAIQGKNESLEKVSSltaQLEsTKEMLRKVVEELTAKKMtlessERTVSDLTASLQEKERAI 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1276 ERCDLEIYQLK-------KEIQALKDTKPQVQTKEVVQEILQFQEDPQTK------EEVASLRAKLSEEQKKQVDLERER 1342
Cdd:pfam15921 513 EATNAEITKLRsrvdlklQELQHLKNEGDHLRNVQTECEALKLQMAEKDKvieilrQQIENMTQLVGQHGRTAGAMQVEK 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1343 ASQEEQIARKEEELSRVKervvqqeVVRYEEEPGLRAEAsafAESIDVELRQIDKLRAELRRLQrrrtelerqleelere 1422
Cdd:pfam15921 593 AQLEKEINDRRLELQEFK-------ILKDKKDAKIRELE---ARVSDLELEKVKLVNAGSERLR---------------- 646
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1423 rqARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQhrrqlleGELETLRRKLAA 1502
Cdd:pfam15921 647 --AVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ-------SELEQTRNTLKS 717
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1503 LEKAEvkekvvlSESVQVEKGdteqeiqrlkssLEEESRSKREldvEVSRLEARLSELEFHNSKSSKELDFLREENHKLQ 1582
Cdd:pfam15921 718 MEGSD-------GHAMKVAMG------------MQKQITAKRG---QIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLS 775
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578828140 1583 LERQNLQLETRRLQSEINMAATETRDLR----NMTVA-DSGTNHDSRLWS-LERELDDLKRLSKDKDLEIDELQ 1650
Cdd:pfam15921 776 QELSTVATEKNKMAGELEVLRSQERRLKekvaNMEVAlDKASLQFAECQDiIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
817-1601 |
1.85e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.60 E-value: 1.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 817 EAEKLRSLLDLENGRRSHVSKRARLQSPATKVKEEEAalaakfTEVYAINRQRLQNLEFALNLLRQQPEVEVTHETLQRN 896
Cdd:pfam02463 185 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLEL------EEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQ 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 897 RPDSGVEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQgpQESVVRKEVLKKVPDPVLEESFQQLQRTLAEEQHK 976
Cdd:pfam02463 259 EIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSE--LLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 977 NQLLQEELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEvlqlREELEALRRQKGAREAEVLLLQQRVAALAE 1056
Cdd:pfam02463 337 IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE----SERLSSAAKLKEEELELKSEEEKEAQLLLE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1057 EKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEgKITVKEVLKVEKD 1136
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ-LVKLQEQLELLLS 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1137 AATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVAN---LRLELVEQER 1213
Cdd:pfam02463 492 RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADeveERQKLVRALT 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1214 KYRGAEEQLRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQR-----LREEIVDKTRLIERCDLEIYQLKKE 1288
Cdd:pfam02463 572 ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRakvveGILKDTELTKLKESAKAKESGLRKG 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1289 IQALKDTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEV 1368
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1369 VRYEEEPGLRAEASAFAESIDVELR--------------QIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQ 1434
Cdd:pfam02463 732 DKINEELKLLKQKIDEEEEEEEKSRlkkeekeeekselsLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELK 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1435 R---LQQRLAALEQEEAEAREKVTHTQKVVLQQDpQQAREHALLRLQLEEEQHRRQLLEGELETLRRKlaaLEKAEVKEK 1511
Cdd:pfam02463 812 EeaeLLEEEQLLIEQEEKIKEEELEELALELKEE-QKLEKLAEEELERLEEEITKEELLQELLLKEEE---LEEQKLKDE 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1512 VVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENHKLQLERQNLQLE 1591
Cdd:pfam02463 888 LESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLL 967
|
810
....*....|
gi 578828140 1592 TRRLQSEINM 1601
Cdd:pfam02463 968 AKEELGKVNL 977
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1018-1236 |
2.01e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.54 E-value: 2.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1018 AQADEVLQLREELEALRRqkgareaEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLR 1097
Cdd:COG4913 225 EAADALVEHFDDLERAHE-------ALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1098 EKQEEELSFLQDKLKRLEKERAMAEGKItvkEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEE 1177
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREEL---DELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLP 374
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578828140 1178 NAKV--VVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRG 1236
Cdd:COG4913 375 LPASaeEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
848-1194 |
2.68e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 58.98 E-value: 2.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 848 VKEEEAALAAKFTEVYaiNRQRLQNLEFALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRKE-LDEETERRRQLENEV 926
Cdd:pfam17380 245 LAEDVTTMTPEYTVRY--NGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEeKAREVERRRKLEEAE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 927 KSTQEE------IWTLRNQGPQE-----SVVRKEVLKKVPDPVLEESF-------QQLQRTLAEEQHKNQLLQEELEALQ 988
Cdd:pfam17380 323 KARQAEmdrqaaIYAEQERMAMErerelERIRQEERKRELERIRQEEIameisrmRELERLQMERQQKNERVRQELEAAR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 989 LQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLRE----ELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEK 1064
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEerarEMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1065 VTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRlEKERAMAEgkitvkEVLKVEKDAATEREVS 1144
Cdd:pfam17380 483 KRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYE-EERRREAE------EERRKQQEMEERRRIQ 555
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 578828140 1145 DLTRQYEDEAAKARASQREKtELLRKIWALEEENAKVVVQEK---VREIVRPD 1194
Cdd:pfam17380 556 EQMRKATEERSRLEAMERER-EMMRQIVESEKARAEYEATTPittIKPIYRPR 607
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
980-1506 |
5.36e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 5.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 980 LQEELEALQLQLRALEQeTRDGGQEYvvkevlriepdRAQADEVLQLREELEALRRQKGAREAEvlLLQQRVAALAEEKS 1059
Cdd:COG4913 240 AHEALEDAREQIELLEP-IRELAERY-----------AAARERLAELEYLRAALRLWFAQRRLE--LLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1060 RAQEKVTEKEVVKLQndpqLEAEYQQLQEDHQRQDQLREKQ-EEELSFLQDKLKRLEKERAMAEGKI---------TVKE 1129
Cdd:COG4913 306 RLEAELERLEARLDA----LREELDELEAQIRGNGGDRLEQlEREIERLERELEERERRRARLEALLaalglplpaSAEE 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1130 VLKVEKDAATERE-VSDLTRQYEDEAAKARAS----QREKTELLRKIWALEEeNAKVV---VQEKVREIVRPDPKAESE- 1200
Cdd:COG4913 382 FAALRAEAAALLEaLEEELEALEEALAEAEAAlrdlRRELRELEAEIASLER-RKSNIparLLALRDALAEALGLDEAEl 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1201 --VANLrLELVEQERKYRGAEEQL------------RSYQSELEALRRRGPQVEVkeVTKEVIKYKTDPEMEK-ELQRLR 1265
Cdd:COG4913 461 pfVGEL-IEVRPEEERWRGAIERVlggfaltllvppEHYAAALRWVNRLHLRGRL--VYERVRTGLPDPERPRlDPDSLA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1266 EEIVDKT---------RLIERCDleiYQLKKEIQALKDTK----PQVQTKevvQEILQFQEDPQTKEEVASL-----RAK 1327
Cdd:COG4913 538 GKLDFKPhpfrawleaELGRRFD---YVCVDSPEELRRHPraitRAGQVK---GNGTRHEKDDRRRIRSRYVlgfdnRAK 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1328 LSEEQKKQVDLERERASQEEQIARKEEELSRVKER-VVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQ 1406
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERrEALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1407 RRRtelERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRR 1486
Cdd:COG4913 692 EQL---EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
570 580
....*....|....*....|
gi 578828140 1487 QLLEGELETLRRKLAALEKA 1506
Cdd:COG4913 769 ENLEERIDALRARLNRAEEE 788
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1020-1662 |
9.11e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 9.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1020 ADEVLQLREELEALRRQKGAreaevllLQQRVAALAEEKSRAQEKVTEKEVvklqNDPQLEAEYQQLQEDHQRQDQLREK 1099
Cdd:TIGR02168 231 VLRLEELREELEELQEELKE-------AEEELEELTAELQELEEKLEELRL----EVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1100 QEEELSFLQDKLKRLEKERAMAEGKItvkevlkvekdaaterevsDLTRQYEDEAAKARASQREKTELLRKiwaleeena 1179
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQL-------------------EELESKLDELAEELAELEEKLEELKE--------- 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1180 kvvvqekvreivrpdpkaesEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRR--GPQVEVKEVTKEVIKYKTDPEM 1257
Cdd:TIGR02168 352 --------------------ELESLEAELEELEAELEELESRLEELEEQLETLRSKvaQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1258 -EKELQRLREEIVDKTRLIERCDLE--IYQLKKEIQALKDTKPQVQTKEVVQEILQFQEDpQTKEEVASLRAKLSEEQKK 1334
Cdd:TIGR02168 412 lEDRRERLQQEIEELLKKLEEAELKelQAELEELEEELEELQEELERLEEALEELREELE-EAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1335 QVDLERERASQEE------QIARKEEELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVE-----------LRQIDK 1397
Cdd:TIGR02168 491 LDSLERLQENLEGfsegvkALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVEnlnaakkaiafLKQNEL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1398 LRA---ELRRLQRRRTELERQLEELERERQARREAERE-------------------VQRLQQRLAALEQEEAEAR---- 1451
Cdd:TIGR02168 571 GRVtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVkfdpklrkalsyllggvlvVDDLDNALELAKKLRPGYRivtl 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1452 --EKVTH----TQKVVLQQDPQQAREHAL--LRLQLEEEQHRRQLLEGELETLRRKLAALEKaEVKEKVVLSESVQVEKG 1523
Cdd:TIGR02168 651 dgDLVRPggviTGGSAKTNSSILERRREIeeLEEKIEELEEKIAELEKALAELRKELEELEE-ELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1524 DTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEINMAA 1603
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR 809
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 578828140 1604 TETRDLRnmtvaDSGTNHDSRLWSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQ 1662
Cdd:TIGR02168 810 AELTLLN-----EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
228-402 |
1.26e-07 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 53.99 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 228 LQDYMQRCTNELYWLDQQAKGRMQYDWSDRNLDYPSRRRQYENFiNRNLEAKEERINKLHSEGDQLLAAEHPGRNSIEAH 307
Cdd:cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEAL-EAELAAHEERVEALNELGEQLIEEGHPDAEEIQER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 308 MEAVHADWKEYLNLLICEESHLKYMEDYHQFHEDVKDAQELLRKVDSDLNQKYGPdfKDRYQIELLLRELDDQEKVLDKY 387
Cdd:cd00176 81 LEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLG--KDLESVEELLKKHKELEEELEAH 158
|
170
....*....|....*
gi 578828140 388 EDVVQGLQKRGQQVV 402
Cdd:cd00176 159 EPRLKSLNELAEELL 173
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1093-1665 |
1.27e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1093 QDQLREKQEE------ELSFLQDKLKRLEKERAMAEgkitvKEVLKVEKdaaTEREVSDLTRQYEDEAAKARASQREKTE 1166
Cdd:PRK03918 192 EELIKEKEKEleevlrEINEISSELPELREELEKLE-----KEVKELEE---LKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1167 LLRKIWALEEENAKVvvQEKVREIVRPDPKAEsEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVTK 1246
Cdd:PRK03918 264 LEERIEELKKEIEEL--EEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1247 EVIKyktdpEMEKELQRLREEIVDKTRLIErcdlEIYQLKKEIQALKDTKPQVQTKEVVQEIlqfqedpqtkEEVASLRA 1326
Cdd:PRK03918 341 EELK-----KKLKELEKRLEELEERHELYE----EAKAKKEELERLKKRLTGLTPEKLEKEL----------EELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1327 KLSEEQKKqvdLERERASQEEQIARKEEELSRVKERVVQQEVVRY----EEEPGLRAEASAFAESIDVELRQIDKLRAEL 1402
Cdd:PRK03918 402 EIEEEISK---ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRelteEHRKELLEEYTAELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1403 RRLQRRrtelerqleelereRQARREAEREVQRLQQrlaaleqEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEe 1482
Cdd:PRK03918 479 RKELRE--------------LEKVLKKESELIKLKE-------LAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK- 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1483 qhrrqlLEGELETLRRKLAALEKAEVKEKVVLSEsvqveKGDTEQEIQRLKSSLEEES-RSKRELDVEVSRLEARLSE-L 1560
Cdd:PRK03918 537 ------LKGEIKSLKKELEKLEELKKKLAELEKK-----LDELEEELAELLKELEELGfESVEELEERLKELEPFYNEyL 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1561 EFHNSKSS-----KELDFLREENHKLQLERQNLQLETRRLQSEINMAATETRDLRNMTVADSGTNHDSRLWSLERELDDL 1635
Cdd:PRK03918 606 ELKDAEKElereeKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEEL 685
|
570 580 590
....*....|....*....|....*....|
gi 578828140 1636 KRLSKDKDLEIDELQKRLGSVAVKREQREN 1665
Cdd:PRK03918 686 EKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
599-1405 |
1.35e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 599 LRTRVEDTNRKYEHLLQLLDLAQEKVDVAnrlekslqqSWELLATHENHLNQDDTVPessrvldskgQELAAMACELQAQ 678
Cdd:TIGR02169 196 KRQQLERLRREREKAERYQALLKEKREYE---------GYELLKEKEALERQKEAIE----------RQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 679 KSLLGEVEQNLQAAKQCSSTLASRFQEHCPDLERQ-EAEVHKLGQRFNNLRQQVERRAQSLQSAKAayehfhrghdHVLQ 757
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERELEDAEE----------RLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 758 FLVSIPSYEPQETDSLSQMETKLKNQKNLLDEIASRE-------QEVQKICANSQQYQQAVKDYELEAEKLRSLLDleng 830
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKeeledlrAELEEVDKEFAETRDELKDYREKLEKLKREIN---- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 831 rrSHVSKRARLQSPATKVKEEEAALAAKftevyaINRQRLQNLEFALNLLRQQPEVEVTHETLQRNRPDSGveeawKIRK 910
Cdd:TIGR02169 403 --ELKRELDRLQEELQRLSEELADLNAA------IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS-----KYEQ 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 911 ELDEETERRRQLENEVKSTQEEIWTLRNQgpQESVVRKEVLKKVPDPVLEESFQQLQRTLAE-----EQHKN-------- 977
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQ--ARASEERVRGGRAVEEVLKASIQGVHGTVAQlgsvgERYATaievaagn 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 978 -----------------QLLQEE---------LEALQLQLRALEQETRDGGQEYVVKEVL---RIEPDRAQADEVLQLRE 1028
Cdd:TIGR02169 548 rlnnvvveddavakeaiELLKRRkagratflpLNKMRDERRDLSILSEDGVIGFAVDLVEfdpKYEPAFKYVFGDTLVVE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1029 ELEALRRQKGareaevlllQQRVAALAE---EKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDhqrqdqlREKQEEELS 1105
Cdd:TIGR02169 628 DIEAARRLMG---------KYRMVTLEGelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRER-------LEGLKRELS 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1106 FLQDKLKRLEKEramaegkitVKEVLKVEKDAatEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKvVVQE 1185
Cdd:TIGR02169 692 SLQSELRRIENR---------LDELSQELSDA--SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN-VKSE 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1186 KVREIVRPDPKaESEVANLRLELVEQERKYrgAEEQLRSYQSELEALRRRgpQVEVKEVTKEVIKYKTDPEMEKELqrLR 1265
Cdd:TIGR02169 760 LKELEARIEEL-EEDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEE--VSRIEARLREIEQKLNRLTLEKEY--LE 832
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1266 EEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEvvqEILQFQEDpQTKEEVASLRAKLSEEQKKQVDLERERASQ 1345
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL---EELEAALR-DLESRLGDLKKERDELEAQLRELERKIEEL 908
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 578828140 1346 EEQIARKEEELSRVKER--VVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRL 1405
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKleALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1009-1668 |
1.56e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.52 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1009 EVLRIEPDRAQADEVLQLREELEALRRQkgarEAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQE 1088
Cdd:pfam02463 161 EAAGSRLKRKKKEALKKLIEETENLAEL----IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1089 dhQRQDQLREKQEEELSFLQDKLKRLEKERAMAEgKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELL 1168
Cdd:pfam02463 237 --ERIDLLQELLRDEQEEIESSKQEIEKEEEKLA-QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1169 RKIWALEEENAKV-VVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVT-- 1245
Cdd:pfam02463 314 EKLKESEKEKKKAeKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKlk 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1246 --KEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEiLQFQEDPQTKEEVAS 1323
Cdd:pfam02463 394 eeELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQE-LKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1324 LRAKLSEEQKKQVDLERERASQEEQIARKE----EELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDV--------- 1390
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKEskarSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVaistavive 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1391 --ELRQIDKLRAELRR--LQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDP 1466
Cdd:pfam02463 553 vsATADEVEERQKLVRalTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1467 QQAREHALLRLQLEEEQHRRQLLEGELETLRRK----------LAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSL 1536
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKaslseltkelLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1537 EEESRSKRELDVEVSRLEARLSELEFHNSKsSKELDFLREENHKLQLERQNLQLETRRLQSEINMAATETRDLRNMTVAD 1616
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLK-QKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 578828140 1617 SgtnhDSRLWSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQRENHLR 1668
Cdd:pfam02463 792 K----EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELA 839
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1091-1582 |
2.54e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1091 QRQDQLREKQEEELsflQDKLKRLEKERAMAEGKItvkEVLKVEKDAATEREvsdltrqyeDEAAKARASQREKTEllrK 1170
Cdd:PRK02224 191 QLKAQIEEKEEKDL---HERLNGLESELAELDEEI---ERYEEQREQARETR---------DEADEVLEEHEERRE---E 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1171 IWALEEENAKVvvQEKVREIVRPDPKAESEVANLR--LELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVTKEV 1248
Cdd:PRK02224 253 LETLEAEIEDL--RETIAETEREREELAEEVRDLRerLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1249 IKYKTDPEM-EKELQRLREEIVDKTRLIERCDLEIYQLKKEIQalkDTKPQVQTKEVVQEILQfQEDPQTKEEVASLRAK 1327
Cdd:PRK02224 331 EECRVAAQAhNEEAESLREDADDLEERAEELREEAAELESELE---EAREAVEDRREEIEELE-EEIEELRERFGDAPVD 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1328 LSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYE---EEPGLRAEASAFAESIDVELRQIDKLRAELRR 1404
Cdd:PRK02224 407 LGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcPECGQPVEGSPHVETIEEDRERVEELEAELED 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1405 LQRRRTELERQLEELERERQARREAER---EVQRLQQRLAALEQEEAEAREKVT--HTQKVVLQQDPQQAREHAL-LRLQ 1478
Cdd:PRK02224 487 LEEEVEEVEERLERAEDLVEAEDRIERleeRREDLEELIAERRETIEEKRERAEelRERAAELEAEAEEKREAAAeAEEE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1479 LEEEQHRRQLLEGELETLRRKLAALEKAevkekvvlsESVQVEKGDTEQEIQRL--------------KSSLEEESRSKR 1544
Cdd:PRK02224 567 AEEAREEVAELNSKLAELKERIESLERI---------RTLLAAIADAEDEIERLrekrealaelnderRERLAEKRERKR 637
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 578828140 1545 ELDVEV--SRLE---ARLSELEFHNSKSSKELDFLREENHKLQ 1582
Cdd:PRK02224 638 ELEAEFdeARIEearEDKERAEEYLEQVEEKLDELREERDDLQ 680
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
959-1365 |
4.16e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.34 E-value: 4.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 959 LEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEY-VVKEVLRiepdraQADEVLQLREELEALrrQK 1037
Cdd:COG3096 290 LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLnLVQTALR------QQEKIERYQEDLEEL--TE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1038 GAREAevlllQQRVAALAEEKSRAQEKV--TEKEVVKLQNdpQLeAEYQQ-LQEDHQRQDQLREkqeeelsflqdKLKRL 1114
Cdd:COG3096 362 RLEEQ-----EEVVEEAAEQLAEAEARLeaAEEEVDSLKS--QL-ADYQQaLDVQQTRAIQYQQ-----------AVQAL 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1115 EKERAM-------AEGKITVKEVLKVEKDAATErEVSDLtRQYEDEAAKARASQREKTELLRKIW-ALEEENAKVVVQEK 1186
Cdd:COG3096 423 EKARALcglpdltPENAEDYLAAFRAKEQQATE-EVLEL-EQKLSVADAARRQFEKAYELVCKIAgEVERSQAWQTAREL 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1187 VREivRPDPKAESE-VANLRLELVEQERKYR---GAEEQLRSYQselealRRRGPQVEVKEVTKEVIKyktdpEMEKELQ 1262
Cdd:COG3096 501 LRR--YRSQQALAQrLQQLRAQLAELEQRLRqqqNAERLLEEFC------QRIGQQLDAAEELEELLA-----ELEAQLE 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1263 RLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEILQfqedPQTKEEVASLRAkLSEEQKKQVDLERER 1342
Cdd:COG3096 568 ELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLR----EQSGEALADSQE-VTAAMQQLLEREREA 642
|
410 420
....*....|....*....|...
gi 578828140 1343 ASQEEQIARKEEELSRVKERVVQ 1365
Cdd:COG3096 643 TVERDELAARKQALESQIERLSQ 665
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1111-1561 |
6.80e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 6.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1111 LKRLEKERAM---AEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEKV 1187
Cdd:COG4717 48 LERLEKEADElfkPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1188 REIVRPDPKAESEVANL--RLE-LVEQERKYRGAEEQLRSYQSELEALRRrgpQVEVKEVTKEVIKYKTDPEMEKELQRL 1264
Cdd:COG4717 128 LPLYQELEALEAELAELpeRLEeLEERLEELRELEEELEELEAELAELQE---ELEELLEQLSLATEEELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1265 REEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEILQF--------------QEDPQTKEEVA-------S 1323
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallallglgGSLLSLILTIAgvlflvlG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1324 LRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELR 1403
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1404 RLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREhallrlQLEEEQ 1483
Cdd:COG4717 365 LEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEE------ELEELE 438
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578828140 1484 HRRQLLEGELETLRRKLAALEkAEVKEkvvLSESVQVEkgDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELE 1561
Cdd:COG4717 439 EELEELEEELEELREELAELE-AELEQ---LEEDGELA--ELLQELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
908-1408 |
7.94e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 7.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 908 IRKELDEETERRRQLEnEVKSTQEEIwtlrnqgpQESVVRKEVLKKVPDPVleeSFQQLQRTLAEEQHKNQLLQEELEAL 987
Cdd:COG4913 240 AHEALEDAREQIELLE-PIRELAERY--------AAARERLAELEYLRAAL---RLWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 988 QLQLRALEQETRDGGQEYvvkEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEksraqEKVTE 1067
Cdd:COG4913 308 EAELERLEARLDALREEL---DELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLP-----LPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1068 KEVVKLQND-----PQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKER-AMAEGKITVKEVLKVEKDAATER 1141
Cdd:COG4913 380 EEFAALRAEaaallEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsNIPARLLALRDALAEALGLDEAE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1142 --------EVSDLTRQYEDEAAKARASQR------EKTE--LLRKIWALEeeNAKVVVQEKVREIVRPDPKAESEVANLR 1205
Cdd:COG4913 460 lpfvgeliEVRPEEERWRGAIERVLGGFAltllvpPEHYaaALRWVNRLH--LRGRLVYERVRTGLPDPERPRLDPDSLA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1206 LELVEQERKYRG----------------AEEQLRSYQ---------SELEALRRRGPQVEVKEV------TKEVIKYKtd 1254
Cdd:COG4913 538 GKLDFKPHPFRAwleaelgrrfdyvcvdSPEELRRHPraitragqvKGNGTRHEKDDRRRIRSRyvlgfdNRAKLAAL-- 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1255 pemEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKD----TKPQVQTKEVVQEILQFQEDPQT-----------KE 1319
Cdd:COG4913 616 ---EAELAELEEELAEAEERLEALEAELDALQERREALQRlaeySWDEIDVASAEREIAELEAELERldassddlaalEE 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1320 EVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVV-----------RYEEEPGLRAEAS---AFA 1385
Cdd:COG4913 693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLarlelralleeRFAAALGDAVERElreNLE 772
|
570 580
....*....|....*....|...
gi 578828140 1386 ESIDVELRQIDKLRAELRRLQRR 1408
Cdd:COG4913 773 ERIDALRARLNRAEEELERAMRA 795
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1256-1669 |
9.67e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 9.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1256 EMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKpqvQTKEVVQEILQFQEDPQTKEEVASLRAklSEEQKKQ 1335
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRER---EKAERYQALLKEKREYEGYELLKEKEA--LERQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1336 VdlERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLRAEASAfaESIDVElRQIDKLRAELRRLQRrrtelerq 1415
Cdd:TIGR02169 242 I--ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE--EQLRVK-EKIGELEAEIASLER-------- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1416 leelererqARREAEREVQRLQQRlaaleqeeaearekvthtqkvvlqqdpqqarehallRLQLEEEQHRrqlLEGELET 1495
Cdd:TIGR02169 309 ---------SIAEKERELEDAEER------------------------------------LAKLEAEIDK---LLAEIEE 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1496 LRRKLaalekaevkekvvlsesvqvekgdteQEIQRLKSSLEEESRSKREldvEVSRLEARLSELEFHNSKSSKELDFLR 1575
Cdd:TIGR02169 341 LEREI--------------------------EEERKRRDKLTEEYAELKE---ELEDLRAELEEVDKEFAETRDELKDYR 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1576 EENHKLQLERQNLQLETRRLQSEINMAATETRDLRNmtvadsgtnhdsRLWSLERELDDLKRLSKDKDLEIDELQKRLGS 1655
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNA------------AIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
410
....*....|....
gi 578828140 1656 VAVKREQRENHLRR 1669
Cdd:TIGR02169 460 LAADLSKYEQELYD 473
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
961-1384 |
2.30e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 2.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 961 ESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEyvVKEVLRIEPDRAQADEVLQLREELEALRRQKGAR 1040
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREE--LEKLEKLLQLLPLYQELEALEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1041 EAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAM 1120
Cdd:COG4717 152 EERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1121 AEGKITVKEVLKVEKDA-------------------------------ATEREVSDLTRQYEDEAAKARASQREKTELLR 1169
Cdd:COG4717 232 LENELEAAALEERLKEArlllliaaallallglggsllsliltiagvlFLVLGLLALLFLLLAREKASLGKEAEELQALP 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1170 KIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRlELVEQERKYRGAEEQLR--SYQSELEALRRRGPQVEVKEVTKE 1247
Cdd:COG4717 312 ALEELEEEELEELLAALGLPPDLSPEELLELLDRIE-ELQELLREAEELEEELQleELEQEIAALLAEAGVEDEEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1248 VIKYKTDPEMEKELQRLREEI--VDKTRLIERCDLEIYQLKKEIQALKDtkpqvQTKEVVQEILQFQedpqtkEEVASLR 1325
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLeeLLGELEELLEALDEEELEEELEELEE-----ELEELEEELEELR------EELAELE 459
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578828140 1326 AKLS--EEQKKQVDLERERASQEEQIARKEEELSRVK--ERVVQQEVVRYEEE--PGLRAEASAF 1384
Cdd:COG4717 460 AELEqlEEDGELAELLQELEELKAELRELAEEWAALKlaLELLEEAREEYREErlPPVLERASEY 524
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1141-1664 |
5.41e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 5.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1141 REVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQ-EKVREIVRPDPKAESEVANLRLELVEQERKYRGAE 1219
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREElEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1220 EQLRSYQSELEALRRRgpQVEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQAlkdtkpqv 1299
Cdd:PRK03918 259 EKIRELEERIEELKKE--IEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE-------- 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1300 qtkevvqeilQFQEDPQTKEEVASLRAKLSEEQKKQVDLErERASQEEQIARKEEELSRVKERVVQQEVVRYEEEpglRA 1379
Cdd:PRK03918 329 ----------RIKELEEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE---LE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1380 EASAFAESIDVELRQIDKLRAELR-RLQRRRTELERQLEELERERQARREAEREvQRLQQRLAALEQEEAEAREKVTHTQ 1458
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKkEIKELKKAIEELKKAKGKCPVCGRELTEE-HRKELLEEYTAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1459 KvvLQQDPQQAREHALLRLQLEEEQHRRQLLEgELETLRRKLAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEE 1538
Cdd:PRK03918 474 K--ERKLRKELRELEKVLKKESELIKLKELAE-QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1539 ES---RSKRELDVEVSRLEARLSELEfhnsKSSKELDFLREENHKLQLErqnlqletrrlqsEINMAATETRDLRNMtva 1615
Cdd:PRK03918 551 LEelkKKLAELEKKLDELEEELAELL----KELEELGFESVEELEERLK-------------ELEPFYNEYLELKDA--- 610
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 578828140 1616 dsgtnhDSRLWSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQRE 1664
Cdd:PRK03918 611 ------EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
967-1363 |
5.91e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.50 E-value: 5.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 967 QRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEY-VVKEVLRiepdraQADEVLQLREELEALRRQKGAREAEVL 1045
Cdd:PRK04863 299 RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLnLVQTALR------QQEKIERYQADLEELEERLEEQNEVVE 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1046 LLQQRVAALAEEKSRAQEkvtekEVVKLQNdpQLeAEYQQ-LQEDHQRQDQLrekqeeelsflQDKLKRLEKERAM---- 1120
Cdd:PRK04863 373 EADEQQEENEARAEAAEE-----EVDELKS--QL-ADYQQaLDVQQTRAIQY-----------QQAVQALERAKQLcglp 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1121 ---AEGKITVKEVLKVEKDAATErEVSDLTRQYEDeaAKARASQREKT-ELLRKIWA-LEEENAKVVVQEKVREIVRPDP 1195
Cdd:PRK04863 434 dltADNAEDWLEEFQAKEQEATE-ELLSLEQKLSV--AQAAHSQFEQAyQLVRKIAGeVSRSEAWDVARELLRRLREQRH 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1196 KAESEVAnLRLELVEQERKYRGaeeqlrsyQSELEALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEI--VDKTR 1273
Cdd:PRK04863 511 LAEQLQQ-LRMRLSELEQRLRQ--------QQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVseARERR 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1274 LIERCDLEiyQLKKEIQALKDTKPQVQ---------------TKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDL 1338
Cdd:PRK04863 582 MALRQQLE--QLQARIQRLAARAPAWLaaqdalarlreqsgeEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDE 659
|
410 420
....*....|....*....|....*
gi 578828140 1339 ERERASQEEqiARKEEELSRVKERV 1363
Cdd:PRK04863 660 EIERLSQPG--GSEDPRLNALAERF 682
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1015-1437 |
6.61e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 6.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1015 PDRAQADEVLQLREELEALRRQKG---AREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDP--QLEAEYQQLQED 1089
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEeyaELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1090 HQRQDQLREkQEEELSFLQDKLKRLEKERAMAEGKItvkEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLR 1169
Cdd:COG4717 145 PERLEELEE-RLEELRELEEELEELEAELAELQEEL---EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1170 KIWALEEENAKVVVQEKVREIVRP--DPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKE---V 1244
Cdd:COG4717 221 ELEELEEELEQLENELEAAALEERlkEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREkasL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1245 TKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLE--------IYQLKKEIQALKDTKPQVQTKEVVQEILQFQEDPQ 1316
Cdd:COG4717 301 GKEAEELQALPALEELEEEELEELLAALGLPPDLSPEellelldrIEELQELLREAEELEEELQLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1317 TKEEvASLRAKLsEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEpgLRAEASAFAESIDVELRQID 1396
Cdd:COG4717 381 VEDE-EELRAAL-EQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEE--LEEELEELEEELEELREELA 456
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 578828140 1397 KLRAELRRLQRRRTELERQlEELERERQARREAEREVQRLQ 1437
Cdd:COG4717 457 ELEAELEQLEEDGELAELL-QELEELKAELRELAEEWAALK 496
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1264-1505 |
8.60e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 8.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1264 LREEIVDKTRLIERCDL---EIYQLKKEIQALKDTKPQVQTKEVVQEILQ-FQEDPQTKEEVASLRAKLS--EEQKKQVD 1337
Cdd:COG4913 213 VREYMLEEPDTFEAADAlveHFDDLERAHEALEDAREQIELLEPIRELAErYAAARERLAELEYLRAALRlwFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1338 LERERASQEEQIARKEEELSRVKERVVQQEvvryEEEPGLRAEASafaesiDVELRQIDKLRAELRRLQRRRtelerqle 1417
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALR----EELDELEAQIR------GNGGDRLEQLEREIERLEREL-------- 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1418 elererqarREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLR 1497
Cdd:COG4913 355 ---------EERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
....*...
gi 578828140 1498 RKLAALEK 1505
Cdd:COG4913 426 AEIASLER 433
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1018-1235 |
9.48e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 9.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1018 AQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKV--TEKEVVKLQNdpQLEAEYQQLQEDHQRQDQ 1095
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaaLARRIRALEQ--ELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1096 LREKQEEelsfLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALE 1175
Cdd:COG4942 95 LRAELEA----QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1176 EENAKVVVQEKvreivrpdpKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRR 1235
Cdd:COG4942 171 AERAELEALLA---------ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
657-1505 |
1.12e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.72 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 657 SSRVLDSKGQELAAMACELQAQKSLLGEVEQNLQAAkqcSSTL-----ASRFQEHcpdLERQEAEVHKLGQRfnnLRQQV 731
Cdd:COG3096 297 ARRQLAEEQYRLVEMARELEELSARESDLEQDYQAA---SDHLnlvqtALRQQEK---IERYQEDLEELTER---LEEQE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 732 ERRAQSLQSAKAAYEHFHRGHDhvlqflvsipsyepqETDSLsqmETKLKNQKNLLDEIASReqevqkicanSQQYQQAV 811
Cdd:COG3096 368 EVVEEAAEQLAEAEARLEAAEE---------------EVDSL---KSQLADYQQALDVQQTR----------AIQYQQAV 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 812 KDYElEAEKLRSL--LDLENGRRSHVSKRARLQSPATKVKEEE------AALAAKFTEVYAINRQ------RLQNLEFAL 877
Cdd:COG3096 420 QALE-KARALCGLpdLTPENAEDYLAAFRAKEQQATEEVLELEqklsvaDAARRQFEKAYELVCKiageveRSQAWQTAR 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 878 NLLRQQPEVEVTHETLQrnrpdsgveeawKIRKELDEETERRRQLENevkstqeeiwtlrnqgpqesvvrkevlkkvpdp 957
Cdd:COG3096 499 ELLRRYRSQQALAQRLQ------------QLRAQLAELEQRLRQQQN--------------------------------- 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 958 vLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDggqeyvvkevlriepDRAQADEVLQLREELEALRRQK 1037
Cdd:COG3096 534 -AERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAE---------------AVEQRSELRQQLEQLRARIKEL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1038 GAREAEVLLLQQRVAALAEEKSRAQE---KVTEKEVVKLQNDPQLEAEYQQLQedhQRQDQLrEKQEEELSF----LQDK 1110
Cdd:COG3096 598 AARAPAWLAAQDALERLREQSGEALAdsqEVTAAMQQLLEREREATVERDELA---ARKQAL-ESQIERLSQpggaEDPR 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1111 LKRLeKERAmaeGKITVKEVLK-VEKDAATERE-----------VSDLtrqyedEAAKARASQREktELLRKIW------ 1172
Cdd:COG3096 674 LLAL-AERL---GGVLLSEIYDdVTLEDAPYFSalygparhaivVPDL------SAVKEQLAGLE--DCPEDLYliegdp 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1173 ---------ALEEENAKVVV--QEKVR-----EIVRPDPKA-ESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRR- 1234
Cdd:COG3096 742 dsfddsvfdAEELEDAVVVKlsDRQWRysrfpEVPLFGRAArEKRLEELRAERDELAEQYAKASFDVQKLQRLHQAFSQf 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1235 RGPQVEVKevtkevikYKTDPEMEkeLQRLREEIVDKTRLIERCDLEIYQLKkeiQALKDTKPQVQTKEVVQEILQFQED 1314
Cdd:COG3096 822 VGGHLAVA--------FAPDPEAE--LAALRQRRSELERELAQHRAQEQQLR---QQLDQLKEQLQLLNKLLPQANLLAD 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1315 PQTKEEVASLRAKLSEEQ----------------KKQVDLERERASQEEQIARKEEELSRVKERVVQQ-----EVVR--- 1370
Cdd:COG3096 889 ETLADRLEELREELDAAQeaqafiqqhgkalaqlEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQifalsEVVQrrp 968
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1371 ---YEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAERE-VQRLQQRLAALEQE 1446
Cdd:COG3096 969 hfsYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQtLQELEQELEELGVQ 1048
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*....
gi 578828140 1447 EAEAREKVTHTQKVVLQqdpQQAREHALLRLQLEEEqhrRQLLEGELETLRRKLAALEK 1505
Cdd:COG3096 1049 ADAEAEERARIRRDELH---EELSQNRSRRSQLEKQ---LTRCEAEMDSLQKRLRKAER 1101
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
966-1611 |
1.29e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 966 LQRTLAEEQHKNQLLQEELEALqLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQ-LREELEALRRQKGAREAev 1044
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAM-ADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEdSNTQIEQLRKMMLSHEG-- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1045 lLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLqedhqrqdqLREkQEEELSFLQDKL----KRLEKERAM 1120
Cdd:pfam15921 185 -VLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKI---------LRE-LDTEISYLKGRIfpveDQLEALKSE 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1121 AEGKItvkEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEE--NAKVVVQEKVREIvrpdpkaE 1198
Cdd:pfam15921 254 SQNKI---ELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQarNQNSMYMRQLSDL-------E 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1199 SEVANLRLELVEQERKYRGA----EEQLRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRL 1274
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKieelEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRL 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1275 IER---CDLEIYQLKKEiqaLKDTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKlSEEQKKQVDLERERASQEEQIAR 1351
Cdd:pfam15921 404 WDRdtgNSITIDHLRRE---LDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGK-NESLEKVSSLTAQLESTKEMLRK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1352 KEEELSRVKERVVQQEvvryeeepglraeasafaesidvelRQIDKLRAELRRLQRrrtelerqleelererqARREAER 1431
Cdd:pfam15921 480 VVEELTAKKMTLESSE-------------------------RTVSDLTASLQEKER-----------------AIEATNA 517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1432 EVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPqqarehalLRLQLEEEQHRRQLLEGELETLRRKLAALEKAevkek 1511
Cdd:pfam15921 518 EITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEA--------LKLQMAEKDKVIEILRQQIENMTQLVGQHGRT----- 584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1512 vvlSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSK----SSKELDFLREenhkLQLERQN 1587
Cdd:pfam15921 585 ---AGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKlvnaGSERLRAVKD----IKQERDQ 657
|
650 660
....*....|....*....|....*...
gi 578828140 1588 LQLETRRLQSEINMAATE----TRDLRN 1611
Cdd:pfam15921 658 LLNEVKTSRNELNSLSEDyevlKRNFRN 685
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1102-1651 |
1.53e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1102 EELSFLQDKLKRLEKERAMAEGKIT--VKEVLKVEKdaaterEVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENA 1179
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDkfLTEIKKKEK------ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1180 KVVVQEKVREIVRPDPKAESEVAN-LRLELVEQERKYRGAEEQLRSYQSELEALrrrgpQVEVKEVTKEVIKYKTD-PEM 1257
Cdd:TIGR04523 191 KIKNKLLKLELLLSNLKKKIQKNKsLESQISELKKQNNQLKDNIEKKQQEINEK-----TTEISNTQTQLNQLKDEqNKI 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1258 EKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEILQFQED--------PQTKEEVASLRAKLS 1329
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKleeiqnqiSQNNKIISQLNEQIS 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1330 EEQKKQVDLERERASQEEQIARKEEELSRVKErvvqqevvryeeepglraEASAFAESIDVELRQIDKLRaelRRLQRRR 1409
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRELEEKQNEIEKLKK------------------ENQSYKQEIKNLESQINDLE---SKIQNQE 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1410 TELERQLEELERERQARREAEREVQRLQQrlaaleqeeaeAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLL 1489
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIERLKE-----------TIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVL 473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1490 EGELETLRRKLAALEKaEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELE-------- 1561
Cdd:TIGR04523 474 SRSINKIKQNLEQKQK-ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEdelnkddf 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1562 -FHNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEINMAATETRDLRNMTvadsgTNHDSRLWSLERELDDLKRLSK 1640
Cdd:TIGR04523 553 eLKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI-----EEKEKKISSLEKELEKAKKENE 627
|
570
....*....|.
gi 578828140 1641 DKDLEIDELQK 1651
Cdd:TIGR04523 628 KLSSIIKNIKS 638
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1205-1499 |
1.60e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1205 RLELVEQERKYRGAEEQLRSYQSEL---EALRRRGPQVEvKEVTKEVIKYKTDPEMEKELQRLREEivDKTRLIERCDLE 1281
Cdd:pfam17380 292 KFEKMEQERLRQEKEEKAREVERRRkleEAEKARQAEMD-RQAAIYAEQERMAMERERELERIRQE--ERKRELERIRQE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1282 iyQLKKEIQALKDTK----PQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEqIARKEEELS 1357
Cdd:pfam17380 369 --EIAMEISRMRELErlqmERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQRE-VRRLEEERA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1358 RVKERVVQQEVVRYEEEPGLRA-EASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRL 1436
Cdd:pfam17380 446 REMERVRLEEQERQQQVERLRQqEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEER 525
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578828140 1437 QQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRK 1499
Cdd:pfam17380 526 QKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKAR 588
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
802-1559 |
1.65e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.72 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 802 ANSQQYQQAVKDYELEAEKLRSLL------DLENGRRSHVSKRARLQSPATKVKEEEAALAAKftevyainRQRLQNLEF 875
Cdd:pfam05483 56 SGDCHYQEGLKDSDFENSEGLSRLysklykEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQ--------RKAIQELQF 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 876 ALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVP 955
Cdd:pfam05483 128 ENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAE 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 956 DPVLEESFQqLQRTLAEEQHKNQLLQEELEALQLQ-----------------LRALEQETRDGGQEYVVKEVLRIEPDRA 1018
Cdd:pfam05483 208 NARLEMHFK-LKEDHEKIQHLEEEYKKEINDKEKQvsllliqitekenkmkdLTFLLEESRDKANQLEEKTKLQDENLKE 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1019 QADEVLQLREELEALR-------RQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQ 1091
Cdd:pfam05483 287 LIEKKDHLTKELEDIKmslqrsmSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLR 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1092 RQDQLREKQEEELSF----LQDKLKRLEKERAMAEGKITVKEVLKveKDAATEREVSDLTRQYEDEAAKARASQREKTEL 1167
Cdd:pfam05483 367 TEQQRLEKNEDQLKIitmeLQKKSSELEEMTKFKNNKEVELEELK--KILAEDEKLLDEKKQFEKIAEELKGKEQELIFL 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1168 LRkiwALEEENAKVVVQekVREIVRPDPKAESEVANLRLELVEQERKyrgaEEQLRSYQSELealrrrgpQVEVKEVTKE 1247
Cdd:pfam05483 445 LQ---AREKEIHDLEIQ--LTAIKTSEEHYLKEVEDLKTELEKEKLK----NIELTAHCDKL--------LLENKELTQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1248 VikyktdPEMEKELQRLREEIVDKTRLIERcdleiyqLKKEIQALKDTKPQVQTK-EVVQEILQFQEDpqtkeevaSLRA 1326
Cdd:pfam05483 508 A------SDMTLELKKHQEDIINCKKQEER-------MLKQIENLEEKEMNLRDElESVREEFIQKGD--------EVKC 566
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1327 KLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVV---RYEEEPGLRAEASAFAESIDVELRQIDKLRAELR 1403
Cdd:pfam05483 567 KLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNieeLHQENKALKKKGSAENKQLNAYEIKVNKLELELA 646
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1404 RLQRRrtelerqleelERERQARREAEREVQRLQQrlaaLEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQ 1483
Cdd:pfam05483 647 SAKQK-----------FEEIIDNYQKEIEDKKISE----EKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEK 711
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578828140 1484 HRRQLleGELETLRRKLAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSE 1559
Cdd:pfam05483 712 HKHQY--DKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
907-1119 |
2.55e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 907 KIRKELDEETERRRQLENEVKSTQEEIWTLRnqgpQESVVRKEVLKKvpdpvLEESFQQLQRTLAEEQHKNQLLQEELEA 986
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALE----RRIAALARRIRA-----LEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 987 LQLQLRALEQETRDGGQEYVVKEVLRIEP--------------DRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVA 1052
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDfldavrrlqylkylAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578828140 1053 ALAEEKSRAQEKVTEKEvvklqndpQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERA 1119
Cdd:COG4942 182 ELEEERAALEALKAERQ--------KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
719-1498 |
2.66e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 2.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 719 KLGQRFNNLRQQVERRAQSLQSAKAAYEHFHRGHDHVLQFLVSIPSYEPQETDSLSQMETKLKNQKNLLDEIA------- 791
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEhnlskim 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 792 ----------SREQEVQKIcaNSQQYQQAVKDYELEAEKLRSLLDLENGR-RSHVSKRARLQSPATKVKEEEAALAAKFT 860
Cdd:TIGR00606 266 kldneikalkSRKKQMEKD--NSELELKMEKVFQGTDEQLNDLYHNHQRTvREKERELVDCQRELEKLNKERRLLNQEKT 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 861 EV------YAINRQRLQNLEFALNLLRQQPEVEVTHETLQRNrPDSGVEEAWKIRKELDEETERRRQLENEVKSTQEEIW 934
Cdd:TIGR00606 344 ELlveqgrLQLQADRHQEHIRARDSLIQSLATRLELDGFERG-PFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKER 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 935 TlrnqgPQESVVRKEVLKKVPDPVLEESFQQLQRTLAEEQHKNQLLQ----------EELEALQLQLRALEQETRDGGQE 1004
Cdd:TIGR00606 423 L-----KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQqlegssdrilELDQELRKAERELSKAEKNSLTE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1005 YVVKEVLRIEPDRAQADEVL-QLREELEALRRQKGAREAEVLLLQQRVAA---LAEEKSRAQEKVTeKEVVKLQNDPQLE 1080
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLrKLDQEMEQLNHHTTTRTQMEMLTKDKMDKdeqIRKIKSRHSDELT-SLLGYFPNKKQLE 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1081 AEYQQLQED-HQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEvlKVEKDAATEREVSDLTRQYE--DEAAKA 1157
Cdd:TIGR00606 577 DWLHSKSKEiNQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYED--KLFDVCGSQDEESDLERLKEeiEKSSKQ 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1158 RASQREKTELLRK-IWALEEENAKVVvqekvrEIVRPDPKAESEVANLRLELveqERKYRGAEEQLRSYQSELEALRRRG 1236
Cdd:TIGR00606 655 RAMLAGATAVYSQfITQLTDENQSCC------PVCQRVFQTEAELQEFISDL---QSKLRLAPDKLKSTESELKKKEKRR 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1237 PQVEVKEVTKEVI---KYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQV--------QTKEVV 1305
Cdd:TIGR00606 726 DEMLGLAPGRQSIidlKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVtimerfqmELKDVE 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1306 QEILQFQEDPQTKE---EVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLrAEAS 1382
Cdd:TIGR00606 806 RKIAQQAAKLQGSDldrTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNL-QRRQ 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1383 AFAESIDVELRQIDKLRAELRRL--------QRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKV 1454
Cdd:TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAkeqdspleTFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKI 964
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 578828140 1455 thtQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRR 1498
Cdd:TIGR00606 965 ---QDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQ 1005
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
656-1505 |
2.88e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.19 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 656 ESSRVLDSKGQELAAMACELQAQKSLLGEVEQNLQAAK---QCSSTlASRFQEHcpdLERQEAEVHKLGQRfnnLRQQVE 732
Cdd:PRK04863 297 TSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASdhlNLVQT-ALRQQEK---IERYQADLEELEER---LEEQNE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 733 RRAQSLQSAKAAYEHFHRGHDHVLqflvsipsyepqetdslsQMETKLKNQKNLLDEIASReqevqkicanSQQYQQAVK 812
Cdd:PRK04863 370 VVEEADEQQEENEARAEAAEEEVD------------------ELKSQLADYQQALDVQQTR----------AIQYQQAVQ 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 813 DYElEAEKLRSL--LDLENGRRSHVSKRARLQSPATKVKEeeaaLAAKFTEVYAINRQrlqnLEFALNLLRQ-QPEVEvt 889
Cdd:PRK04863 422 ALE-RAKQLCGLpdLTADNAEDWLEEFQAKEQEATEELLS----LEQKLSVAQAAHSQ----FEQAYQLVRKiAGEVS-- 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 890 hetlqrnrpdsgVEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKevlkkvpdpVLEESFQQLQRT 969
Cdd:PRK04863 491 ------------RSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAER---------LLAEFCKRLGKN 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 970 LAEEqhknQLLQEELEALQLQLRALEQETRDggqeyvvkevlriepDRAQADEVLQLREELEALRRQKGAREAEVLLLQQ 1049
Cdd:PRK04863 550 LDDE----DELEQLQEELEARLESLSESVSE---------------ARERRMALRQQLEQLQARIQRLAARAPAWLAAQD 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1050 RVAALAEEKSRAQEkvtekevvklqNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRL--------EKERAMA 1121
Cdd:PRK04863 611 ALARLREQSGEEFE-----------DSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLsqpggsedPRLNALA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1122 E--GKITVKEVLK-VEKDAATERE-----------VSDLTRqyedeAAKARASQREKTELLRKI-----------WALEE 1176
Cdd:PRK04863 680 ErfGGVLLSEIYDdVSLEDAPYFSalygparhaivVPDLSD-----AAEQLAGLEDCPEDLYLIegdpdsfddsvFSVEE 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1177 ENAKVVVQE--------KVREIVRPDPKA-ESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRR---RGPQVEVkev 1244
Cdd:PRK04863 755 LEKAVVVKIadrqwrysRFPEVPLFGRAArEKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRfigSHLAVAF--- 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1245 tkevikyktDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKkeiQALKDTKPQVQTKEVVQEILQFQEDPQTKEEVASL 1324
Cdd:PRK04863 832 ---------EADPEAELRQLNRRRVELERALADHESQEQQQR---SQLEQAKEGLSALNRLLPRLNLLADETLADRVEEI 899
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1325 RAKLSEEQKKQVDLER--ERASQEEQIARK----EEELSRVKERVVQQEVVR---------------------YEEEPGL 1377
Cdd:PRK04863 900 REQLDEAEEAKRFVQQhgNALAQLEPIVSVlqsdPEQFEQLKQDYQQAQQTQrdakqqafaltevvqrrahfsYEDAAEM 979
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1378 RAEASAFAESIDVELRQI----DKLRAELRRLQRRRTELERQLEELERERQARR----EAEREVQRLQQRLAALEQEEAE 1449
Cdd:PRK04863 980 LAKNSDLNEKLRQRLEQAeqerTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRqmlqELKQELQDLGVPADSGAEERAR 1059
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*.
gi 578828140 1450 AREKVTHtqkvvlqqdpQQAREHALLRLQLEEEqhrRQLLEGELETLRRKLAALEK 1505
Cdd:PRK04863 1060 ARRDELH----------ARLSANRSRRNQLEKQ---LTFCEAEMDNLTKKLRKLER 1102
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
598-1404 |
3.33e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 598 LLRTRVEDTNRKYEHLLQLLDLAQEKVDVANRLEKSLQQSWELLATHENHLNQDDTvpESSRVLDSKGQELAAMACELQA 677
Cdd:pfam02463 241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEE--ELKSELLKLERRKVDDEEKLKE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 678 QKSLLGEVEQNLQAAKQCSSTLASRFQEHCPDLERQEAEVHKLGQRFNNLRQQVERRAQSLQSAKAAYEHFHRGHDHVLQ 757
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 758 FLvSIPSYEPQETDSLSQMETKLKnqKNLLDEIASREQEVQKICANSQQYQQAVKDYELEAEKLRSLLDLENGRRSHVSK 837
Cdd:pfam02463 399 LK-SEEEKEAQLLLELARQLEDLL--KEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 838 RARLQSPATKVKEEEAALAAKFTEVYAINRQRLQNLEFALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRKELDEETE 917
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 918 RRRQLENEVKSTQEE------IWTLRNQGPQESVVRKEVLKKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQL 991
Cdd:pfam02463 556 TADEVEERQKLVRALtelplgARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELT 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 992 RALEQETRDGGQEYVVKEVLRIEPDRA-QADEVLQLREELEALRRQKGAREAEVLLLqqRVAALAEEKSRAQEKVTEKEV 1070
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSeVKASLSELTKELLEIQELQEKAESELAKE--EILRRQLEIKKKEQREKEELK 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1071 VKLQNDPQLEAEYQQLQEDHQRQdQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDL-TRQ 1149
Cdd:pfam02463 714 KLKLEAEELLADRVQEAQDKINE-ELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVeEEK 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1150 YEDEAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSEL 1229
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 872
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1230 EALRRRGPQVEVKEVTKEVIKYKtdpEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPqvqtkevvqeil 1309
Cdd:pfam02463 873 LLKEEELEEQKLKDELESKEEKE---KEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEP------------ 937
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1310 qfqedpqtkeevaslrAKLSEEQKKQVDLERERASQEEQIA----RKEEELSRVKERVVQQEVVRYEEEPGLRAE-ASAF 1384
Cdd:pfam02463 938 ----------------EELLLEEADEKEKEENNKEEEEERNkrllLAKEELGKVNLMAIEEFEEKEERYNKDELEkERLE 1001
|
810 820
....*....|....*....|
gi 578828140 1385 AESIDVELRQIDKLRAELRR 1404
Cdd:pfam02463 1002 EEKKKLIRAIIEETCQRLKE 1021
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1310-1545 |
4.05e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 4.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1310 QFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEvvryEEEPGLRAEASAFAESID 1389
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE----QELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1390 VELRQIDKLRAELRRLQRrrtELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQA 1469
Cdd:COG4942 94 ELRAELEAQKEELAELLR---ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578828140 1470 REHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVLSesvqvEKGDTEQEIQRLKSSLEEESRSKRE 1545
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA-----ELQQEAEELEALIARLEAEAAAAAE 241
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
910-1637 |
4.20e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 4.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 910 KELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVpDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQL 989
Cdd:TIGR00606 255 KEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGT-DEQLNDLYHNHQRTVREKERELVDCQRELEKLNK 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 990 QLRALEQETrdgGQEYVVKEVLRIEPDRAQAD--------EVLQLREELEALRRQKGAR---EAEVLLLQQRVAALAEEK 1058
Cdd:TIGR00606 334 ERRLLNQEK---TELLVEQGRLQLQADRHQEHirardsliQSLATRLELDGFERGPFSErqiKNFHTLVIERQEDEAKTA 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1059 SRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKeramaegkiTVKEVLKVEKD-A 1137
Cdd:TIGR00606 411 AQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG---------SSDRILELDQElR 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1138 ATEREVSDLTRQYEDEAAKARAS--QREKTELLRKIWALEEENA------------------KVVVQEKVREIVRPDPKA 1197
Cdd:TIGR00606 482 KAERELSKAEKNSLTETLKKEVKslQNEKADLDRKLRKLDQEMEqlnhhtttrtqmemltkdKMDKDEQIRKIKSRHSDE 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1198 ESEVAN-------LRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQV--EVKEVTKEVIKYKTD-------PEMEKEL 1261
Cdd:TIGR00606 562 LTSLLGyfpnkkqLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHInnELESKEEQLSSYEDKlfdvcgsQDEESDL 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1262 QRLREEIVDKTRLIERC-------DLEIYQLKKEIQALKDTKPQV-QTKEVVQEILQFQED-----PQTKEEVASLRAKL 1328
Cdd:TIGR00606 642 ERLKEEIEKSSKQRAMLagatavySQFITQLTDENQSCCPVCQRVfQTEAELQEFISDLQSklrlaPDKLKSTESELKKK 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1329 SEEQKKQVDLERERASQeeqIARKEEELSRVKERVvQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQR- 1407
Cdd:TIGR00606 722 EKRRDEMLGLAPGRQSI---IDLKEKEIPELRNKL-QKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERf 797
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1408 -RRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALL------RLQLE 1480
Cdd:TIGR00606 798 qMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTnelkseKLQIG 877
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1481 EEQHRRQLLEGELETLRRK-----------------LAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSL------- 1536
Cdd:TIGR00606 878 TNLQRRQQFEEQLVELSTEvqslireikdakeqdspLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVknihgym 957
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1537 --------EEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLRE--ENHKLQLERQNLQLETRRLQSEINMAATET 1606
Cdd:TIGR00606 958 kdienkiqDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQdiDTQKIQERWLQDNLTLRKRENELKEVEEEL 1037
|
810 820 830
....*....|....*....|....*....|.
gi 578828140 1607 RDLRNMTVADSGTNHDSRLWSLERELDDLKR 1637
Cdd:TIGR00606 1038 KQHLKEMGQMQVLQMKQEHQKLEENIDLIKR 1068
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
916-1174 |
4.78e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 4.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 916 TERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALE 995
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA--LERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 996 QETRDGGQEYVvkevlriepDRAQADEVLQLREELEALRRQKGAREAEvlllqqRVAALAEEKSRAQEKVTEKEVVKLQn 1075
Cdd:COG4942 97 AELEAQKEELA---------ELLRALYRLGRQPPLALLLSPEDFLDAV------RRLQYLKYLAPARREQAEELRADLA- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1076 dpQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAA 1155
Cdd:COG4942 161 --ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
250
....*....|....*....
gi 578828140 1156 KARASQREKTELLRKIWAL 1174
Cdd:COG4942 239 AAERTPAAGFAALKGKLPW 257
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
908-1589 |
5.94e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.30 E-value: 5.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 908 IRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDPV--LEESFQQLQR----TLAEEQHKNQLLQ 981
Cdd:pfam12128 274 IASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELeaLEDQHGAFLDadieTAAADQEQLPSWQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 982 EELEALQLQLRALEQETRDGGQEYvvkEVLRIEPDRAQADEVLQLREELEALR----RQKGAREA-----EVLLLQQRVA 1052
Cdd:pfam12128 354 SELENLEERLKALTGKHQDVTAKY---NRRRSKIKEQNNRDIAGIKDKLAKIReardRQLAVAEDdlqalESELREQLEA 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1053 ALAEEKSRAQEKVTEKEVVKLQ-NDPQLEAEyqqLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKitvkevl 1131
Cdd:pfam12128 431 GKLEFNEEEYRLKSRLGELKLRlNQATATPE---LLLQLENFDERIERAREEQEAANAEVERLQSELRQARKR------- 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1132 kveKDAATER----EVSDLTRQYEDEAAKARASQREKT--ELLRKIWALEEEN-AKVVVQEK------VREIVRPDPKAE 1198
Cdd:pfam12128 501 ---RDQASEAlrqaSRRLEERQSALDELELQLFPQAGTllHFLRKEAPDWEQSiGKVISPELlhrtdlDPEVWDGSVGGE 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1199 SEVANLRLELveqerkyrgAEEQLRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPEM---EKELQRLREEIVDKTRLI 1275
Cdd:pfam12128 578 LNLYGVKLDL---------KRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLvqaNGELEKASREETFARTAL 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1276 ERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEILQFQE-DPQTKEEVASLRAKLSEEQKKQVDLERER-ASQEEQIARKE 1353
Cdd:pfam12128 649 KNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSlEAQLKQLDKKHQAWLEEQKEQKREARTEKqAYWQVVEGALD 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1354 EELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRrtelerqleeLERERQARREAEREV 1433
Cdd:pfam12128 729 AQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERK----------IERIAVRRQEVLRYF 798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1434 QRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEK--AEVKEK 1511
Cdd:pfam12128 799 DWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSklATLKED 878
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1512 VVlSESVQVEKGDTEQEIQRLKSSLEEESRS-KRELDVEVSRLEA-RLSELEFHNSKSSKELDFLREENHKLQLERQNLQ 1589
Cdd:pfam12128 879 AN-SEQAQGSIGERLAQLEDLKLKRDYLSESvKKYVEHFKNVIADhSGSGLAETWESLREEDHYQNDKGIRLLDYRKLVP 957
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1427-1653 |
9.96e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 9.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1427 REAEREVQRLQQrLAALEQEEAEAREKVTHTQKVVLQQDPQQA-REHALLRLQLEEEQHRRQLLEGELETLRRKLAALEK 1505
Cdd:COG4913 245 EDAREQIELLEP-IRELAERYAAARERLAELEYLRAALRLWFAqRRLELLEAELEELRAELARLEAELERLEARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1506 aevkEKVVLSESVQVEKGDTEQEIQRLKSSLEEEsrsKRELDVEVSRLEARLSELEFHNSKSSKELDFLREEnhkLQLER 1585
Cdd:COG4913 324 ----ELDELEAQIRGNGGDRLEQLEREIERLERE---LEERERRRARLEALLAALGLPLPASAEEFAALRAE---AAALL 393
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578828140 1586 QNLQLETRRLQSEINMAATETRDLRNmtvadsgtnhdsRLWSLERELDDLKRLSKDKDLEIDELQKRL 1653
Cdd:COG4913 394 EALEEELEALEEALAEAEAALRDLRR------------ELRELEAEIASLERRKSNIPARLLALRDAL 449
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1163-1561 |
1.07e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1163 EKTELLRKIWALEEENAKVVVQEKVReiVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRrgpqvEVK 1242
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTVR--YNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQ-----EKE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1243 EVTKEVIKYKTDPEMEK----ELQRLREEIVDKTRLIERCDLEIYQLKKEIQalKDTKPQVQTKEVVQEILQFQEDPqtk 1318
Cdd:pfam17380 307 EKAREVERRRKLEEAEKarqaEMDRQAAIYAEQERMAMERERELERIRQEER--KRELERIRQEEIAMEISRMRELE--- 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1319 eevaslRAKLSEEQKKqvdlerERASQEEQIARKEEELSRVKERVVQQEVVRYEEepgLRAEASafaesidvELRQIdkl 1398
Cdd:pfam17380 382 ------RLQMERQQKN------ERVRQELEAARKVKILEEERQRKIQQQKVEMEQ---IRAEQE--------EARQR--- 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1399 raELRRLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALlrlq 1478
Cdd:pfam17380 436 --EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMI---- 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1479 leEEQHRRQLLEGELETLRRKLAALEKAEVKEKvvlSESVQVEKGDTEQEIQRLKSSLEEESR-----SKRELDVEVSRL 1553
Cdd:pfam17380 510 --EEERKRKLLEKEMEERQKAIYEEERRREAEE---ERRKQQEMEERRRIQEQMRKATEERSRleameREREMMRQIVES 584
|
....*...
gi 578828140 1554 EARLSELE 1561
Cdd:pfam17380 585 EKARAEYE 592
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
881-1590 |
1.26e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 881 RQQPEVEVTHETLQRNRpdsgvEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDpvLE 960
Cdd:pfam01576 2 RQEEEMQAKEEELQKVK-----ERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQE--LE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 961 ESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRdggQEYVVKEVLRIEPDRAQAdEVLQLREELEALRRQKGAR 1040
Cdd:pfam01576 75 EILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLD---EEEAARQKLQLEKVTTEA-KIKKLEEDILLLEDQNSKL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1041 EAEVLLLQQRVAALAEEKSRAQEKVteKEVVKLQNdpqleaeyqqlqedhqrqdqlreKQEEELSFLQDKLKRLEKERAM 1120
Cdd:pfam01576 151 SKERKLLEERISEFTSNLAEEEEKA--KSLSKLKN-----------------------KHEAMISDLEERLKKEEKGRQE 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1121 AEgkitvKEVLKVEKDAATERE-VSDLTRQYEDEAAKARASQREKTELLRKIwaLEEENAKVVVQEKVREivrpdpkAES 1199
Cdd:pfam01576 206 LE-----KAKRKLEGESTDLQEqIAELQAQIAELRAQLAKKEEELQAALARL--EEETAQKNNALKKIRE-------LEA 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1200 EVANLRlELVEQERKYRG-AEEQLRSYQSELEALRRR--------GPQVEVK---EVTKEVIKYKTDPEMEKELQRLREE 1267
Cdd:pfam01576 272 QISELQ-EDLESERAARNkAEKQRRDLGEELEALKTEledtldttAAQQELRskrEQEVTELKKALEEETRSHEAQLQEM 350
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1268 IVDKTRLIERCDLEIYQLKKEIQALKDTKpQVQTKEVVQEILQFQEDPQTKEEVASLRAK----LSEEQKKQVDLERERA 1343
Cdd:pfam01576 351 RQKHTQALEELTEQLEQAKRNKANLEKAK-QALESENAELQAELRTLQQAKQDSEHKRKKlegqLQELQARLSESERQRA 429
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1344 SQEEQIARKEEELSRVKERVVQQE---VVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTeleRQLEELE 1420
Cdd:pfam01576 430 ELAEKLSKLQSELESVSSLLNEAEgknIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERN---SLQEQLE 506
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1421 RERQARREAEREVQRLQQRLAALEQEEaearEKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRKL 1500
Cdd:pfam01576 507 EEEEAKRNVERQLSTLQAQLSDMKKKL----EEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQEL 582
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1501 AALEKAEVKEKVVLSesvqvekgDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREenHK 1580
Cdd:pfam01576 583 DDLLVDLDHQRQLVS--------NLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALE--AK 652
|
730
....*....|
gi 578828140 1581 LQLERQNLQL 1590
Cdd:pfam01576 653 EELERTNKQL 662
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1501-1653 |
1.35e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1501 AALEKAEVKEKVVLSESVQVEKGDTEQEIQrlkssleeesrskrELDVEVSRLEARLSELEFHNSKsskeldfLREENHK 1580
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREKEHEERELT--------------EEEEEIRRLEEQVERLEAEVEE-------LEAELEE 438
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578828140 1581 LQLERQNLQLETRRLQSEINMAATETRDLRNMtvadsgtnhDSRLWSLERELDDLKRlskdkdlEIDELQKRL 1653
Cdd:COG2433 439 KDERIERLERELSEARSEERREIRKDREISRL---------DREIERLERELEEERE-------RIEELKRKL 495
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
907-1362 |
1.49e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 907 KIRKELDEETERRRQLENEVKSTQEEIwtlrnqgpqesvvrKEVlKKVPDPVLEEsFQQLQRTLAEEQHKNQLLQEELEA 986
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQK--------------KEN-KKNIDKFLTE-IKKKEKELEKLNNKYNDLKKQKEE 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 987 LQLQLRALEQETRDggqeyVVKEVLRIEPDRAQADEVL-----------QLREELEALRRQKGAREAEVLLLQQRVAALA 1055
Cdd:TIGR04523 171 LENELNLLEKEKLN-----IQKNIDKIKNKLLKLELLLsnlkkkiqknkSLESQISELKKQNNQLKDNIEKKQQEINEKT 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1056 EEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQL---------------REKQEEELSFLQDKLKRLEKERAM 1120
Cdd:TIGR04523 246 TEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELekqlnqlkseisdlnNQKEQDWNKELKSELKNQEKKLEE 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1121 AEGKITVKEvlkvEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENakvvvQEKVREIvrpdPKAESE 1200
Cdd:TIGR04523 326 IQNQISQNN----KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEN-----QSYKQEI----KNLESQ 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1201 VANLRLELVEQERKYRGAEEQLRSYQSELEALRRrgpqvEVKEVTKEVIKYKtdpemeKELQRLREEIVDKTRLIERCDL 1280
Cdd:TIGR04523 393 INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK-----EIERLKETIIKNN------SEIKDLTNQDSVKELIIKNLDN 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1281 EIYQLKKEIQALKDT---------KPQVQTKEVVQEILQF-QEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIA 1350
Cdd:TIGR04523 462 TRESLETQLKVLSRSinkikqnleQKQKELKSKEKELKKLnEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKIS 541
|
490
....*....|..
gi 578828140 1351 RKEEELSRVKER 1362
Cdd:TIGR04523 542 DLEDELNKDDFE 553
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
867-1184 |
1.63e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 867 RQRLQNLEFALNLLRQQpevevthetlqRNRPDSGVEEAwkiRKELDEETERRRQLENEVKSTQEEIWTLRNQgpQESVV 946
Cdd:TIGR02169 680 RERLEGLKRELSSLQSE-----------LRRIENRLDEL---SQELSDASRKIGEIEKEIEQLEQEEEKLKER--LEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 947 RKEVLKKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYVVKEVLRIE------------ 1014
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEarlreieqklnr 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1015 --PDRAQADEVLQ-LREELEALRRQKGAREAEVLLLQQRVAALAEE--KSRAQEKVTEKEVVKLQND-PQLEAEYQQLQE 1088
Cdd:TIGR02169 824 ltLEKEYLEKEIQeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEEleELEAALRDLESRLGDLKKErDELEAQLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1089 DHQRQDQLREKQEEELSFLQDKLKRLEK-----ERAMAEGKITVKEVLKVEKDAAT----EREVSDL-------TRQYED 1152
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEelseiEDPKGEDEEIPEEELSLEDVQAElqrvEEEIRALepvnmlaIQEYEE 983
|
330 340 350
....*....|....*....|....*....|....*....
gi 578828140 1153 EAA-------KARASQREKTELLRKIWALEEENAKVVVQ 1184
Cdd:TIGR02169 984 VLKrldelkeKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
958-1127 |
1.63e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 958 VLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYVVKEVL-RIEPDRAQADE-----------VLQ 1025
Cdd:COG3206 216 LLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRaQLAELEAELAElsarytpnhpdVIA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1026 LREELEALRRQKGAR--------EAEVLLLQQRVAALAEEKSRAQEKVtekevvklQNDPQLEAEYQQLQEDHQRQDQLr 1097
Cdd:COG3206 296 LRAQIAALRAQLQQEaqrilaslEAELEALQAREASLQAQLAQLEARL--------AELPELEAELRRLEREVEVAREL- 366
|
170 180 190
....*....|....*....|....*....|
gi 578828140 1098 ekqeeeLSFLQDKLKRLEKERAMAEGKITV 1127
Cdd:COG3206 367 ------YESLLQRLEEARLAEALTVGNVRV 390
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1210-1665 |
2.15e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1210 EQERKYRGAEEQLRSYQSELEALRRrgpqvEVKEVTKEVIKYKtdpEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEI 1289
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEE-----ELKEAEEKEEEYA---ELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1290 QALKDTKPQVQTKEVVQEIlqfqedPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVV 1369
Cdd:COG4717 126 QLLPLYQELEALEAELAEL------PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1370 RYEEepgLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQqrlaalEQEEAE 1449
Cdd:COG4717 200 ELEE---LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGL------GGSLLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1450 AREKVTHTQKVVLQqdpqqAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVLSESVQVEK-GDTEQE 1528
Cdd:COG4717 271 LILTIAGVLFLVLG-----LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEElLELLDR 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1529 IQRLKSSLEEESRSKRELDVEvsRLEARLSELeFHNSKSSKELDFlrEENHKLQLERQNLQLETRRLQSEINMAATETRD 1608
Cdd:COG4717 346 IEELQELLREAEELEEELQLE--ELEQEIAAL-LAEAGVEDEEEL--RAALEQAEEYQELKEELEELEEQLEELLGELEE 420
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 578828140 1609 LRNMTVADSgtnhdsrlwsLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQREN 1665
Cdd:COG4717 421 LLEALDEEE----------LEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
599-1171 |
2.38e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 599 LRTRVEDTNRKYEHLLQLLDLAQEKVDVANRLEKSLQQSWELLATHENHLNQDDTVPESSRVLDSKGQELAAMACELQAQ 678
Cdd:TIGR00618 231 LREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQ 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 679 ksllgEVEQNLQAAKqcsSTLASRFQeHCPDLERQEAEVHKLGQRFNNLRQQVERRAQSLQSAKAAYEHFHRGH------ 752
Cdd:TIGR00618 311 -----RIHTELQSKM---RSRAKLLM-KRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHtltqhi 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 753 -------DHVLQFLVSIPSYEPQETDSLSQMETKLKNQKNL-LDEIASREQEVQKICANSQQYQQAVKDYELEAEKLRSL 824
Cdd:TIGR00618 382 htlqqqkTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLqGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 825 LDLENGRRSHVSKRARLQSPATKVKEEEaALAAKFTEVYAINRQRLQNLEFALNLLRQQP-EVEVTHETLQR--NRPDSG 901
Cdd:TIGR00618 462 QESAQSLKEREQQLQTKEQIHLQETRKK-AVVLARLLELQEEPCPLCGSCIHPNPARQDIdNPGPLTRRMQRgeQTYAQL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 902 VEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLrnqgPQESVVRKEVLKKVPDPVlEESFQQLQRTLAEEQHKNQLLQ 981
Cdd:TIGR00618 541 ETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL----TQCDNRSKEDIPNLQNIT-VRLQDLTEKLSEAEDMLACEQH 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 982 EELEALQLQLRALEQETRDGGQEyvvKEVLRIEPDRAQADEVLQLREELEALRRqkgAREAEVLLLQQRVAALAEEKSRA 1061
Cdd:TIGR00618 616 ALLRKLQPEQDLQDVRLHLQQCS---QELALKLTALHALQLTLTQERVREHALS---IRVLPKELLASRQLALQKMQSEK 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1062 QEKVTEKEVVK---------LQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLK 1132
Cdd:TIGR00618 690 EQLTYWKEMLAqcqtllrelETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEE 769
|
570 580 590
....*....|....*....|....*....|....*....
gi 578828140 1133 VEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKI 1171
Cdd:TIGR00618 770 VTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEI 808
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
656-1158 |
2.57e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 656 ESSRVLDSKGQELAAmacELQAQKSLLGEVEQNLQAAKQCSSTLASRFQEHCPDLERQEAEV-------HKLGQR----- 723
Cdd:pfam15921 335 EAKRMYEDKIEELEK---QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELslekeqnKRLWDRdtgns 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 724 --FNNLRQQVERRAQSLQSAKAAYEHFHRGHDHVLQFLVSIPSYEPQETDSLSQMETKLKNQKNLLDEIA---------- 791
Cdd:pfam15921 412 itIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVeeltakkmtl 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 792 -SREQEVQKICANSQQYQQAVKDYELEAEKLRSLLDLENGRRSHVSKRA-RLQSPATKVKEEEAALAAKfTEVYAINRQR 869
Cdd:pfam15921 492 eSSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGdHLRNVQTECEALKLQMAEK-DKVIEILRQQ 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 870 LQNL-EFALNLLRQQPEVEVTHETLQRNRPDSGVE-EAWKIRKelDEETERRRQLENEVKSTQEEIWTLRNQGpqesvvr 947
Cdd:pfam15921 571 IENMtQLVGQHGRTAGAMQVEKAQLEKEINDRRLElQEFKILK--DKKDAKIRELEARVSDLELEKVKLVNAG------- 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 948 KEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRdggqeyVVKEVLRIEPDRAQAdEVLQLR 1027
Cdd:pfam15921 642 SERLRAVKD--IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEME------TTTNKLKMQLKSAQS-ELEQTR 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1028 EELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQ---LEAEYQQLQEDHQRQDQLREKQEEEL 1104
Cdd:pfam15921 713 NTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEkhfLKEEKNKLSQELSTVATEKNKMAGEL 792
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 578828140 1105 SFLQDKLKRLEKERAMAEgkitvkevLKVEKDAATEREVSDLTRQYEDEAAKAR 1158
Cdd:pfam15921 793 EVLRSQERRLKEKVANME--------VALDKASLQFAECQDIIQRQEQESVRLK 838
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1391-1668 |
2.66e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1391 ELRQIDkLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAR 1470
Cdd:TIGR02168 221 ELRELE-LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1471 -EHALLRLQLEEEQHRRQL--LEGELETLRRKL--AALEKAEVKEKvvlSESVQVEKGDTEQEIQRLKSSLEEESRSKRE 1545
Cdd:TIGR02168 300 lEQQKQILRERLANLERQLeeLEAQLEELESKLdeLAEELAELEEK---LEELKEELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1546 LDVEVSRLEARLSELEfhnsksskeldflreenhkLQLERQNLQLEtrRLQSEINMAATETRDLRNMTVADSGTNHDSRL 1625
Cdd:TIGR02168 377 LEEQLETLRSKVAQLE-------------------LQIASLNNEIE--RLEARLERLEDRRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 578828140 1626 WSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQRENHLR 1668
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD 478
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1075-1507 |
3.40e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 3.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1075 NDPQLEAEYQQLQEDHQRQDQLREKQEEeLSFLQDKLKRLEKERAMAEGKITVKEVLK-----VEKDAATEREVSDLTRQ 1149
Cdd:COG4717 69 NLKELKELEEELKEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLLqllplYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1150 YEdeaaKARASQREKTELLRKIWALEEENAKVVvQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSEL 1229
Cdd:COG4717 148 LE----ELEERLEELRELEEELEELEAELAELQ-EELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1230 EALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEIL 1309
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1310 QFQEDPQ-------TKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLRAEAS 1382
Cdd:COG4717 303 EAEELQAlpaleelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1383 AFAE--SIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQaRREAEREVQRLQQRLAALEQEEAEAREKVTHTQkv 1460
Cdd:COG4717 383 DEEElrAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD-EEELEEELEELEEELEELEEELEELREELAELE-- 459
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 578828140 1461 vlqqdpqQAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKAE 1507
Cdd:COG4717 460 -------AELEQLEEDGELAELLQELEELKAELRELAEEWAALKLAL 499
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
964-1171 |
3.60e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 964 QQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYVVKEVlriepdraqADEVLQLREELEALRRQKGAREAE 1043
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDL---------SEEAKLLLQQLSELESQLAEARAE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1044 VLLLQQRVAALaeeksRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREK---QEEELSFLQDKLKRLEKERAM 1120
Cdd:COG3206 235 LAEAEARLAAL-----RAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARytpNHPDVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 578828140 1121 AEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKI 1171
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
902-1374 |
4.05e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 4.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 902 VEEAWKIRKELDEETERRRQlenEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQ 981
Cdd:PRK02224 267 IAETEREREELAEEVRDLRE---RLEELEEERDDLLAEAGLDDADAEAVEARREE--LEDRDEELRDRLEECRVAAQAHN 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 982 EELEALQLQLRALEQETRDGGQEYVVKEVlRIEPDRAQADE----VLQLREELEALRRQKGAREAEVLLLQQRVAALAEE 1057
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAELES-ELEEAREAVEDrreeIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1058 KSRAQEKVTEKEvVKLQNDPQLEAEYQQLQ------------EDHQRQDQLREKqEEELSFLQDKLKRLEKERAMAEGKI 1125
Cdd:PRK02224 421 RDELREREAELE-ATLRTARERVEEAEALLeagkcpecgqpvEGSPHVETIEED-RERVEELEAELEDLEEEVEEVEERL 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1126 T-VKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKiwALEEENAKVVVQEKVREivrpdpKAESEVANL 1204
Cdd:PRK02224 499 ErAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRE--RAAELEAEAEEKREAAA------EAEEEAEEA 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1205 RLELVEQERKyrgaeeqLRSYQSELEALRRRGPQVEVKEvtkevikyktdpEMEKELQRLREEIVDKTRLIErcdleiyQ 1284
Cdd:PRK02224 571 REEVAELNSK-------LAELKERIESLERIRTLLAAIA------------DAEDEIERLREKREALAELND-------E 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1285 LKKEIQALKDTKPQVQTKEVVQEILQFQEDPQTKEE-VASLRAKLSEEQKKQVDLERERASQEEQIARKE---EELSRVK 1360
Cdd:PRK02224 625 RRERLAEKRERKRELEAEFDEARIEEAREDKERAEEyLEQVEEKLDELREERDDLQAEIGAVENELEELEelrERREALE 704
|
490
....*....|....
gi 578828140 1361 ERVVQQEVVRYEEE 1374
Cdd:PRK02224 705 NRVEALEALYDEAE 718
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
912-1669 |
5.74e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 5.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 912 LDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEV----------LKKVPDPV----------------LEESFQQ 965
Cdd:pfam01576 84 LEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLqlekvtteakIKKLEEDIllledqnsklskerklLEERISE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 966 LQRTLAEEQHKNQLLQEELEALQLQLRALEQETR--DGGQEYVVKEVLRIEPDRAQA-DEVLQLREELEALRRQKGAREA 1042
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKkeEKGRQELEKAKRKLEGESTDLqEQIAELQAQIAELRAQLAKKEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1043 EVLLLQQRVAALAEEKSRAQEKVTEkevvklqndpqLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAE 1122
Cdd:pfam01576 244 ELQAALARLEEETAQKNNALKKIRE-----------LEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTL 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1123 GKITVKEVLKVEKdaatEREVSDLTRQYEDEAAKARA----------------------SQREKTELLRKIWALEEENAK 1180
Cdd:pfam01576 313 DTTAAQQELRSKR----EQEVTELKKALEEETRSHEAqlqemrqkhtqaleelteqleqAKRNKANLEKAKQALESENAE 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1181 VVVQEKVREIVRPD-----PKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVK--EVTKEVIKYKT 1253
Cdd:pfam01576 389 LQAELRTLQQAKQDsehkrKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKniKLSKDVSSLES 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1254 DPEMEKEL------------QRLREEIVDKTRLIErcdleiyQLKKEIQALKDTKPQVQTKEVvqeilQFQEDPQTKEEV 1321
Cdd:pfam01576 469 QLQDTQELlqeetrqklnlsTRLRQLEDERNSLQE-------QLEEEEEAKRNVERQLSTLQA-----QLSDMKKKLEED 536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1322 ASLrAKLSEEQKKQVDLERERASQ-EEQIARKEEELSRVKERVVQ-----------QEVVRYEEEPGLRAEASAFAESID 1389
Cdd:pfam01576 537 AGT-LEALEEGKKRLQRELEALTQqLEEKAAAYDKLEKTKNRLQQelddllvdldhQRQLVSNLEKKQKKFDQMLAEEKA 615
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1390 VELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEReVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQA 1469
Cdd:pfam01576 616 ISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELER-TNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQV 694
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1470 REhalLRLQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVE 1549
Cdd:pfam01576 695 EE---MKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAA 771
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1550 VSRLEARLSELEFHNSKSSKELDFLREENHKLQLERQNLQLE---TRRLQSEINMAATET-RDLRNMtvadsgtnhDSRL 1625
Cdd:pfam01576 772 KKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQREleeARASRDEILAQSKESeKKLKNL---------EAEL 842
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 578828140 1626 WSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQRENHLRR 1669
Cdd:pfam01576 843 LQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRR 886
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
679-1268 |
6.04e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 6.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 679 KSLLGEVEQNLQAAKQCSSTLASRFQEHCPDLERQEAEVHKLGQRFNNLrQQVERRAQSLQSAKAAYEhfhrghdhvlQF 758
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI-EELEKELESLEGSKRKLE----------EK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 759 LVSIPSYEPQETDSLSQMETKLKNqknlLDEIASREQEVQKICANSQQYQQAVKDYELEAEKLRSLLdleNGRRSHVSKR 838
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKE----LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI---NGIEERIKEL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 839 ARLQSPATKVKEEEAALAAKFTEVyainRQRLQNLEFALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRKELDEE--- 915
Cdd:PRK03918 334 EEKEERLEELKKKLKELEKRLEEL----EERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEisk 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 916 -TERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDPVLEESFQQLQRTLAEEQHknqlLQEELEALQLQLRAL 994
Cdd:PRK03918 410 iTARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKE----IEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 995 EQetrdggqeyVVKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAE--------VLLLQQRVAALAEEKSRAQEKVT 1066
Cdd:PRK03918 486 EK---------VLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEeyeklkekLIKLKGEIKSLKKELEKLEELKK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1067 EKEVVKLQNDpQLEAEYQQLqedhqrQDQLREKQEEELSFLQDKLKRLEK-ERAMAEGKITVKEVLKVEKDAATEREVSD 1145
Cdd:PRK03918 557 KLAELEKKLD-ELEEELAEL------LKELEELGFESVEELEERLKELEPfYNEYLELKDAEKELEREEKELKKLEEELD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1146 LTRQYEDEAAKARASQREKTELLRKIWALEE-ENAKVVVQEKVREIVRPDPKAEsEVANLRLELVEQERKYRGAEEQLRS 1224
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRAELE-ELEKRREEIKKTLEKLKEELEEREK 708
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 578828140 1225 YQSELEALRRRGPQVEvkEVTKEVIKYKTDPEME--KELQRLREEI 1268
Cdd:PRK03918 709 AKKELEKLEKALERVE--ELREKVKKYKALLKERalSKVGEIASEI 752
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
907-1338 |
7.23e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 7.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 907 KIRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDP-----VLEESFQQLQRTLAE-----EQHK 976
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNnkkikELEKQLNQLKSEISDlnnqkEQDW 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 977 NQLLQEELEALQLQLRALEQETRDGGQ---------EYVVKEVLRIEPDRAQADEVLQLRE-ELEALRRQKGAREAEVLL 1046
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNKiisqlneqiSQLKKELTNSESENSEKQRELEEKQnEIEKLKKENQSYKQEIKN 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1047 LQQRVAALaEEKSRAQEKVTEKEVVKLQNdpqLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKIT 1126
Cdd:TIGR04523 389 LESQINDL-ESKIQNQEKLNQQKDEQIKK---LQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1127 V-KEVLKVEKDA--ATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKvvVQEKVREIVRPDPKAESEVAN 1203
Cdd:TIGR04523 465 SlETQLKVLSRSinKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISS--LKEKIEKLESEKKEKESKISD 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1204 LRLELVE--QERKYRGAEEQLRSYQSELEALRRRGPQVEVK-EVTKEVIKyktdpEMEKELQRLREEIVDKTRLIERCDL 1280
Cdd:TIGR04523 543 LEDELNKddFELKKENLEKEIDEKNKEIEELKQTQKSLKKKqEEKQELID-----QKEKEKKDLIKEIEEKEKKISSLEK 617
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 578828140 1281 EIYQLKKEIQALKDTKPQVQT-KEVVQEILQfqedpQTKEEVASLRAKLSEEQKKQVDL 1338
Cdd:TIGR04523 618 ELEKAKKENEKLSSIIKNIKSkKNKLKQEVK-----QIKETIKEIRNKWPEIIKKIKES 671
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
964-1373 |
7.92e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 44.46 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 964 QQLQRTLAEEQhkNQLLQEELEALqLQLRALEQETRDGGQEYVVKEVLR---IEPDRAQADEVLQLREELEALRRQkgar 1040
Cdd:PLN03229 372 QQIKIAINENM--DELGKMDTEEL-LKHRMLKFRKIGGFQEGVPVDPERkvnMKKREAVKTPVRELEGEVEKLKEQ---- 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1041 eaevlllqqrVAALAEEKSRAQEKVTEKEVVKLQNDpqLEAEYQQLQEDHQRQDQLREKQEEELS----------FLQDK 1110
Cdd:PLN03229 445 ----------ILKAKESSSKPSELALNEMIEKLKKE--IDLEYTEAVIAMGLQERLENLREEFSKansqdqlmhpVLMEK 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1111 LKRLEKE----RAMAEGKITVKEVLKVEKDAATEREVSDLTRQYED---------EAAKARASQREKTELLRKIWALEE- 1176
Cdd:PLN03229 513 IEKLKDEfnkrLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKlkaeinkkfKEVMDRPEIKEKMEALKAEVASSGa 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1177 ENAKVVVQEKVREIVRPDPKAESEVANLrlelveqerkyrgaeeqLRSYQSELEALRRRgpqvevkevTKEVIKYKTDPE 1256
Cdd:PLN03229 593 SSGDELDDDLKEKVEKMKKEIELELAGV-----------------LKSMGLEVIGVTKK---------NKDTAEQTPPPN 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1257 MEKELQRLREEIVDKT-RLIERCDLE--IYQLKKEIqALKDTKPQVQTKEVVQEILQfqedpQTKEEVASLrAKLSEEQK 1333
Cdd:PLN03229 647 LQEKIESLNEEINKKIeRVIRSSDLKskIELLKLEV-AKASKTPDVTEKEKIEALEQ-----QIKQKIAEA-LNSSELKE 719
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 578828140 1334 KQVDLERERASQEEQiarKEEELSRVKERVVQQEVVRYEE 1373
Cdd:PLN03229 720 KFEELEAELAAARET---AAESNGSLKNDDDKEEDSKEDG 756
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1021-1164 |
9.95e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 9.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1021 DEVLQLREELEALRRQkgaREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQ 1100
Cdd:PRK12704 64 EEIHKLRNEFEKELRE---RRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ 140
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578828140 1101 EEELSflqdKLKRLEKERAmaegkitvKEVL--KVEKDAatEREVSDLTRQYEDEaAKARASQREK 1164
Cdd:PRK12704 141 LQELE----RISGLTAEEA--------KEILleKVEEEA--RHEAAVLIKEIEEE-AKEEADKKAK 191
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1101-1599 |
1.01e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1101 EEELSFLQDKLKRLEKERAMAEGKITVKEvLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWAleeenak 1180
Cdd:TIGR04523 179 EKEKLNIQKNIDKIKNKLLKLELLLSNLK-KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISN------- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1181 vvVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVtKEVIKYKtdpemEKE 1260
Cdd:TIGR04523 251 --TQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKEL-KSELKNQ-----EKK 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1261 LQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDT--KPQVQTKEVVQEILQFQEDPQTK-EEVASLRAKLSeeqkkqvD 1337
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSESEnsEKQRELEEKQNEIEKLKKENQSYkQEIKNLESQIN-------D 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1338 LERERASQEEQIARKEEELsrvkeRVVQQEVVRYEEE-PGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQL 1416
Cdd:TIGR04523 396 LESKIQNQEKLNQQKDEQI-----KKLQQEKELLEKEiERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQL 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1417 EELERE-RQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLlEGELET 1495
Cdd:TIGR04523 471 KVLSRSiNKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDL-EDELNK 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1496 LRRKLaaleKAEVKEKVVLSESVQVEKgdTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLR 1575
Cdd:TIGR04523 550 DDFEL----KKENLEKEIDEKNKEIEE--LKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAK 623
|
490 500
....*....|....*....|....
gi 578828140 1576 EENHKLQLERQNLQLETRRLQSEI 1599
Cdd:TIGR04523 624 KENEKLSSIIKNIKSKKNKLKQEV 647
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
960-1598 |
1.29e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 960 EESFQQLQRTLAEEQHKNQLLQEELEALQLQLRAlEQETRDGGQEYVVKEVLRiepdraqadevlqlREELEALRRQKGA 1039
Cdd:pfam01576 18 KERQQKAESELKELEKKHQQLCEEKNALQEQLQA-ETELCAEAEEMRARLAAR--------------KQELEEILHELES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1040 REAEVlllQQRVAALAEEKSRAQEKVTEKEvvklQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERA 1119
Cdd:pfam01576 83 RLEEE---EERSQQLQNEKKKMQQHIQDLE----EQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1120 MAEGKItvkevlkvekdaaterevSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKvvvQEKVR-EIVRPDPKAE 1198
Cdd:pfam01576 156 LLEERI------------------SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKK---EEKGRqELEKAKRKLE 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1199 SEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQvevkEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERC 1278
Cdd:pfam01576 215 GESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEE----ETAQKNNALKKIRELEAQISELQEDLESERAARNKA 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1279 DLEIYQLKKEIQALKDTKPQVQTKEVVQEILQFQEDpqtkEEVASLRAKLSEEQKkqvdleRERASQEEQIARKEEELSR 1358
Cdd:pfam01576 291 EKQRRDLGEELEALKTELEDTLDTTAAQQELRSKRE----QEVTELKKALEEETR------SHEAQLQEMRQKHTQALEE 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1359 VKERVVQQEVVRYEEEPGLRAEASAFAEsidvelrqidkLRAELRRLQRRRTELERQleelererqaRREAEREVQRLQQ 1438
Cdd:pfam01576 361 LTEQLEQAKRNKANLEKAKQALESENAE-----------LQAELRTLQQAKQDSEHK----------RKKLEGQLQELQA 419
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1439 RLAALEQEEAEAREKVTHTQkvvlqqdpqqarehallrLQLEEEQHRRQLLEGELETLRRKLAALE----------KAEV 1508
Cdd:pfam01576 420 RLSESERQRAELAEKLSKLQ------------------SELESVSSLLNEAEGKNIKLSKDVSSLEsqlqdtqellQEET 481
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1509 KEKVVLSESVQvekgDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENHKLQ--LERQ 1586
Cdd:pfam01576 482 RQKLNLSTRLR----QLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQreLEAL 557
|
650
....*....|..
gi 578828140 1587 NLQLETRRLQSE 1598
Cdd:pfam01576 558 TQQLEEKAAAYD 569
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
727-896 |
1.44e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 727 LRQQVERRAQSLQSAKAAYEHFHRGHDhvlqfLVSIPSYEPQETDSLSQMETKLKNQKNLLDEIASREQEVQKICANSQQ 806
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNG-----LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPD 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 807 YQQAVKDYELEAEKLRSLLDLENGRR--------SH---VSKRARLQSPATKVKEEEAALAAKFTEVYAINRQRLQNLEF 875
Cdd:COG3206 255 ALPELLQSPVIQQLRAQLAELEAELAelsarytpNHpdvIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQA 334
|
170 180
....*....|....*....|....*
gi 578828140 876 ALNLLRQQ----PEVEVTHETLQRN 896
Cdd:COG3206 335 QLAQLEARlaelPELEAELRRLERE 359
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1670-1698 |
1.48e-03 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 37.85 E-value: 1.48e-03
10 20
....*....|....*....|....*....
gi 578828140 1670 SIVVIHPDTGRELSPEEAHRAGLIDWNMF 1698
Cdd:smart00250 10 IGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| DUF445 |
pfam04286 |
Protein of unknown function (DUF445); Predicted to be a membrane protein. |
912-1142 |
1.53e-03 |
|
Protein of unknown function (DUF445); Predicted to be a membrane protein.
Pssm-ID: 427840 [Multi-domain] Cd Length: 368 Bit Score: 43.00 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 912 LDEETERRRQLENEVKSTQEEIwtLRNQGPQESVVRK--EVLKKVPDPVLEESFQQLQRTLAeeqhKNQLlqEELEALQL 989
Cdd:pfam04286 54 LTPEVLARKLREADPAERLGRW--LADPTNAERLAREvaKLLAEILEDLDDERVQRLLKKAL----RRRL--EEIDLAPL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 990 QLRALEQETRDGGQEYVVKEVLRI-------EPDRAQADEVLQLREELEALRRQKGAREAE------VLLLQQRVAALAE 1056
Cdd:pfam04286 126 LGKLLELLLAEGRHQALLDDLLDRlrdwlrsEEGKQRIAEMIDEFLEEWGPLVALLGGIAEmilralSSLLDEVQADPDH 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1057 EKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKD 1136
Cdd:pfam04286 206 PLRLAFDRAVRELITDLLNDPELRAEVEELKQKLLADPAVQDYVKALWESLRSLLLDDLSDPDSALRRRISELLAEFGER 285
|
....*.
gi 578828140 1137 AATERE 1142
Cdd:pfam04286 286 LAEDPE 291
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
959-1408 |
1.69e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.19 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 959 LEESFQQLQRTLAEEQHKNQllqeeleALQLQLRALEQetrdggqeyvvKEVLRIEPDRAQADEVLQLREELEALRRQKG 1038
Cdd:pfam05557 32 LEKKASALKRQLDRESDRNQ-------ELQKRIRLLEK-----------REAEAEEALREQAELNRLKKKYLEALNKKLN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1039 AREAEV-------LLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLrEKQEEELSFLQDKL 1111
Cdd:pfam05557 94 EKESQLadareviSCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNL-EKQQSSLAEAEQRI 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1112 KRLEKERAMAEGKITVKEVLKVEKDAATEREvsDLTRQYEDEAAKARASQREKtELLRKiwALEEENAKVVVQEKVREiv 1191
Cdd:pfam05557 173 KELEFEIQSQEQDSEIVKNSKSELARIPELE--KELERLREHNKHLNENIENK-LLLKE--EVEDLKRKLEREEKYRE-- 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1192 rpdpkaesEVANLRLELVEQERKYRGAEEQLRSYQSEL---EALRRRGPQVEVKEVTKEVIKY----------KTDPEME 1258
Cdd:pfam05557 246 --------EAATLELEKEKLEQELQSWVKLAQDTGLNLrspEDLSRRIEQLQQREIVLKEENSsltssarqleKARRELE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1259 KELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKdtkpqvQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQV-D 1337
Cdd:pfam05557 318 QELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLT------KERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTqK 391
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578828140 1338 LERERASQEEQIARKEEELSRVKERVVQQEV----VRYEEEPglrAEASAFAESIDVELRQIDKLRAELRRLQRR 1408
Cdd:pfam05557 392 MQAHNEEMEAQLSVAEEELGGYKQQAQTLERelqaLRQQESL---ADPSYSKEEVDSLRRKLETLELERQRLREQ 463
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1290-1407 |
1.71e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1290 QALKDTKPQVQTKE----VVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERvVQ 1365
Cdd:COG2433 380 EALEELIEKELPEEepeaEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSE-ER 458
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 578828140 1366 QEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQR 1407
Cdd:COG2433 459 REIRKDREISRLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| PspA_IM30 |
pfam04012 |
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ... |
1177-1361 |
1.85e-03 |
|
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.
Pssm-ID: 461130 [Multi-domain] Cd Length: 215 Bit Score: 41.59 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1177 ENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPE 1256
Cdd:pfam04012 21 EDPEKMLEQAIRDMQSELVKARQALAQTIARQKQLERRLEQQTEQAKKLEEKAQAALTKGNEELAREALAEKKSLEKQAE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1257 MEKELQRLREEIVDKTRL-IERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEILQFQ---------EDPQTKEEVASLRA 1326
Cdd:pfam04012 101 ALETQLAQQRSAVEQLRKqLAALETKIQQLKAKKNLLKARLKAAKAQEAVQTSLGSLstssatdsfERIEEKIEEREARA 180
|
170 180 190
....*....|....*....|....*....|....*
gi 578828140 1327 KLSEEQKKQVDLERERASQEEQIARKEEELSRVKE 1361
Cdd:pfam04012 181 DAAAELASAVDLDAKLEQAGIQMEVSEDVLARLKA 215
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
902-1361 |
1.87e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 902 VEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQgpQESVVRKEVlkkvpdPVLEESFQQLQRTLAEEQHKNQLL- 980
Cdd:COG5022 877 VELAERQLQELKIDVKSISSLKLVNLELESEIIELKKS--LSSDLIENL------EFKTELIARLKKLLNNIDLEEGPSi 948
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 981 ----QEELEALQLQLRALEQETRDGGQEYvvkevlriepdraqadevlqlrEELEALRRQKGAREAEVLLLQQRVAALAE 1056
Cdd:COG5022 949 eyvkLPELNKLHEVESKLKETSEEYEDLL----------------------KKSTILVREGNKANSELKNFKKELAELSK 1006
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1057 EKSRAQE-----KVTEKEVVKLQNDPQL-----EAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKR-----LEKERAMA 1121
Cdd:COG5022 1007 QYGALQEstkqlKELPVEVAELQSASKIissesTELSILKPLQKLKGLLLLENNQLQARYKALKLRRensllDDKQLYQL 1086
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1122 EG------KITVKEVLKVEKDAATEREVSDLTRqyeDEAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDP 1195
Cdd:COG5022 1087 EStenllkTINVKDLEVTNRNLVKPANVLQFIV---AQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEA 1163
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1196 KAESEVANLRLELVEQER---------KYRGAEEQLRSYQSELEALRRRGPQ-VEVKEVTKEVIKYKTDPEMEKElqRLR 1265
Cdd:COG5022 1164 NLEALPSPPPFAALSEKRlyqsalydeKSKLSSSEVNDLKNELIALFSKIFSgWPRGDKLKKLISEGWVPTEYST--SLK 1241
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1266 EEIVDKTRLIERCDLEIYQL---KKEIQALKDTKPQVQTKE--VVQEILQFQEDPQTKEevasLRAKLSEEQKKQVDlER 1340
Cdd:COG5022 1242 GFNNLNKKFDTPASMSNEKLlslLNSIDNLLSSYKLEEEVLpaTINSLLQYINVGLFNA----LRTKASSLRWKSAT-EV 1316
|
490 500
....*....|....*....|.
gi 578828140 1341 ERASQEEQIARKEEELSRVKE 1361
Cdd:COG5022 1317 NYNSEELDDWCREFEISDVDE 1337
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
1036-1180 |
1.90e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.49 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1036 QKGAREAEVL---LLQQRVAALAEEKSRAQEKVTEKEVVKLQndpqlEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLK 1112
Cdd:PRK09510 71 QKSAKRAEEQrkkKEQQQAEELQQKQAAEQERLKQLEKERLA-----AQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAA 145
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578828140 1113 RL----EKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAA-KARASQREKTELLRKIWALEEENAK 1180
Cdd:PRK09510 146 KAkaeaEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAaKAAAEAKKKAEAEAKKKAAAEAKKK 218
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1079-1359 |
2.01e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1079 LEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVkevlkvekdAATEREVSDLTRQYEDeaakAR 1158
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDV---------ASAEREIAELEAELER----LD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1159 ASQREKTELLRKIWALEEEnakvvVQEkvreivrpdpkAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQ 1238
Cdd:COG4913 682 ASSDDLAALEEQLEELEAE-----LEE-----------LEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1239 VEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQ-----ALKDTKPQVQTKEVVQEILQFQE 1313
Cdd:COG4913 746 ELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNrewpaETADLDADLESLPEYLALLDRLE 825
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 578828140 1314 D---PQTKEEVASLRAKLSEEQKKQVD--LERERASQEEQIARKEEELSRV 1359
Cdd:COG4913 826 EdglPEYEERFKELLNENSIEFVADLLskLRRAIREIKERIDPLNDSLKRI 876
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1333-1670 |
2.68e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1333 KKQVDLERERASQEEQIARKE--EELSRVKERVVQQEVVRYEEEPGLRAEA-SAFAESIDVELRQIDKLRAELRRLQRRR 1409
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEalKKLIEETENLAELIIDLEELKLQELKLKeQAKKALEYYQLKEKLELEEEYLLYLDYL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1410 TELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLL 1489
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1490 EGELETLRRKLAALEKAEVKEKVVLSESVQVEKgdtEQEIQRLKSSLEEESRSKRELDVEV--SRLEARLSELEFHNSKS 1567
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELK---ELEIKREAEEEEEEELEKLQEKLEQleEELLAKKKLESERLSSA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1568 SKELDFLREENHKLQLERQNLQLETRRLQSEINMAATETRDLRNMTVADSGTnhDSRLWSLERELDDLKRLSKDKDLEID 1647
Cdd:pfam02463 390 AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIEL--KQGKLTEEKEELEKQELKLLKDELEL 467
|
330 340
....*....|....*....|...
gi 578828140 1648 ELQKRLGSVAVKREQRENHLRRS 1670
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLL 490
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
907-1277 |
2.77e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.52 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 907 KIRKELDEETERRRQLENEVKSTQEEIWTLRNqgpQESVVRKEVLKkvpdpvLEESFQQLQRTLAEEQHK----NQLLQE 982
Cdd:PRK04778 102 KAKHEINEIESLLDLIEEDIEQILEELQELLE---SEEKNREEVEQ------LKDLYRELRKSLLANRFSfgpaLDELEK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 983 ELEALQLQLRALEQETRDGgqeyvvkevlriepDRAQADEVL-QLREELEALRRQ-----KGAREAEVLLLQQ------- 1049
Cdd:PRK04778 173 QLENLEEEFSQFVELTESG--------------DYVEAREILdQLEEELAALEQImeeipELLKELQTELPDQlqelkag 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1050 ------------------RVAALAEEKSRAQE-------KVTEKEVVKLQND-----PQLEAEYQQLQEDHQRQDQLR-- 1097
Cdd:PRK04778 239 yrelveegyhldhldiekEIQDLKEQIDENLAlleeldlDEAEEKNEEIQERidqlyDILEREVKARKYVEKNSDTLPdf 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1098 -EKQEEELSFLQDKLKRLEKERAMAEGkitvkEVLKVEKdaaTEREVSDLTRQYED-----EAAKARAS--QREKTELLR 1169
Cdd:PRK04778 319 lEHAKEQNKELKEEIDRVKQSYTLNES-----ELESVRQ---LEKQLESLEKQYDEiteriAEQEIAYSelQEELEEILK 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1170 KIWALEEENAKvvVQEKVREIVRPDPKAESEVANLRLELVEQERK----------------YRGAEEQLRSYQSELEALR 1233
Cdd:PRK04778 391 QLEEIEKEQEK--LSEMLQGLRKDELEAREKLERYRNKLHEIKRYleksnlpglpedylemFFEVSDEIEALAEELEEKP 468
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 578828140 1234 rrgpqVEVKEVTKEVIKYKTDPEmekELQRLREEIVDKTRLIER 1277
Cdd:PRK04778 469 -----INMEAVNRLLEEATEDVE---TLEEETEELVENATLTEQ 504
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
900-1432 |
2.86e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.43 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 900 SGVEEAWKIRKELDEETERRRQLENEVKSTQEEIWTL-RNQGPQESVVRKEVLKKVPDPV--LEESFQQLQRTLAEEQHK 976
Cdd:pfam07111 112 AGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLhQEQLSSLTQAHEEALSSLTSKAegLEKSLNSLETKRAGEAKQ 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 977 NQLLQEELEALQLQLRALEQETR------DGGQEYVVKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEVLLLQQR 1050
Cdd:pfam07111 192 LAEAQKEAELLRKQLSKTQEELEaqvtlvESLRKYVGEQVPPEVHSQTWELERQELLDTMQHLQEDRADLQATVELLQVR 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1051 VAALAEEKSRAQEKVTEKevvkLQNDPQLEAEYQQlqedhQRQDQLREKQEEELSFL-QDKLKRLEKERAMAEGKITVKE 1129
Cdd:pfam07111 272 VQSLTHMLALQEEELTRK----IQPSDSLEPEFPK-----KCRSLLNRWREKVFALMvQLKAQDLEHRDSVKQLRGQVAE 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1130 V-----LKVEKDAATEREVSDLTRQYEDEAAKARASQRE--KTELLRKIW----ALEEENAKVVV------QEKVREIVR 1192
Cdd:pfam07111 343 LqeqvtSQSQEQAILQRALQDKAAEVEVERMSAKGLQMElsRAQEARRRQqqqtASAEEQLKFVVnamsstQIWLETTMT 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1193 PDPKAESEVANLRLELVEQERKYRGAEEqlrsyqseLEALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEivdKT 1272
Cdd:pfam07111 423 RVEQAVARIPSLSNRLSYAVRKVHTIKG--------LMARKVALAQLRQESCPPPPPAPPVDADLSLELEQLREE---RN 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1273 RLIERCDLEIYQLKKEIQALKDT--KPQVQTKEVVQEILQfqEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIA 1350
Cdd:pfam07111 492 RLDAELQLSAHLIQQEVGRAREQgeAERQQLSEVAQQLEQ--ELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELT 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1351 RKEEelsrVKERVVQQEVVryEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEE----------LE 1420
Cdd:pfam07111 570 QQQE----IYGQALQEKVA--EVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQElrrlqdearkEE 643
|
570
....*....|..
gi 578828140 1421 RERQARREAERE 1432
Cdd:pfam07111 644 GQRLARRVQELE 655
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
1015-1105 |
2.93e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 42.63 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1015 PDRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEkevvklqndpqLEAEYQQLQEDHQRQD 1094
Cdd:PRK11448 143 LLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQE-----------LEAQLEQLQEKAAETS 211
|
90
....*....|.
gi 578828140 1095 QLREKQEEELS 1105
Cdd:PRK11448 212 QERKQKRKEIT 222
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1256-1605 |
3.61e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1256 EMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKdTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQ 1335
Cdd:pfam07888 49 AQEAANRQREKEKERYKRDREQWERQRRELESRVAELK-EELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAH 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1336 V----DLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEpGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTE 1411
Cdd:pfam07888 128 EarirELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEE-AERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDT 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1412 LERQLE------ELERERQARREAEREVQR-----LQQRLAALEQEEAEAREKVThtqKVVLQQDPQQAREHAlLRLQLE 1480
Cdd:pfam07888 207 QVLQLQdtittlTQKLTTAHRKEAENEALLeelrsLQERLNASERKVEGLGEELS---SMAAQRDRTQAELHQ-ARLQAA 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1481 EeqhrrqlLEGELETLRRKLAALEKAEVKEKVVLSESVQVEKGDTE---QEIQRLKSSLEEESRSKRELDVEV------S 1551
Cdd:pfam07888 283 Q-------LTLQLADASLALREGRARWAQERETLQQSAEADKDRIEklsAELQRLEERLQEERMEREKLEVELgrekdcN 355
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 578828140 1552 RLEARLSELEFHNSKSSkeLDFLREENHKLQLERQNLQLETRRLQSEINMAATE 1605
Cdd:pfam07888 356 RVQLSESRRELQELKAS--LRVAQKEKEQLQAEKQELLEYIRQLEQRLETVADA 407
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
867-1141 |
4.02e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 867 RQRLQNLEFALNLLRQ-QPEVEVthetLQRNRPDSGVEEawkIRKELDEETERRR----------QLENEV---KSTQEE 932
Cdd:PRK04863 864 RSQLEQAKEGLSALNRlLPRLNL----LADETLADRVEE---IREQLDEAEEAKRfvqqhgnalaQLEPIVsvlQSDPEQ 936
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 933 IWTLRNQGPQESVVRKEV------LKKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYv 1006
Cdd:PRK04863 937 FEQLKQDYQQAQQTQRDAkqqafaLTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQL- 1015
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1007 vkevlriepdrAQADEVLQ-LREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEkvtekevvklqndpqlEAEYQQ 1085
Cdd:PRK04863 1016 -----------AQYNQVLAsLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR----------------DELHAR 1068
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578828140 1086 LQEDHQRQDQL---REKQEEELSFLQDKLKRLEKE-----RAMAEGKITVKEVLKVEKDAATER 1141
Cdd:PRK04863 1069 LSANRSRRNQLekqLTFCEAEMDNLTKKLRKLERDyhemrEQVVNAKAGWCAVLRLVKDNGVER 1132
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
964-1235 |
4.10e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 964 QQLQRTlaeEQHKNQLL------------QEELEALQLQLRALEQE-TRDGGQEYVVKEVLRiepdraqadevlQLREEL 1030
Cdd:COG3096 809 QKLQRL---HQAFSQFVgghlavafapdpEAELAALRQRRSELERElAQHRAQEQQLRQQLD------------QLKEQL 873
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1031 EALRRQKGarEAEVLL---LQQRVAALAEEKSRAQE------------KVTEKEVVKLQNDPQ----LEAEYQQLQEDHQ 1091
Cdd:COG3096 874 QLLNKLLP--QANLLAdetLADRLEELREELDAAQEaqafiqqhgkalAQLEPLVAVLQSDPEqfeqLQADYLQAKEQQR 951
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1092 RQDQlrekQEEELSFL---------QDKLKRLEKERAMAEgkiTVKEVLKvekDAATEREVSDLT-RQYEDEAAKA---- 1157
Cdd:COG3096 952 RLKQ----QIFALSEVvqrrphfsyEDAVGLLGENSDLNE---KLRARLE---QAEEARREAREQlRQAQAQYSQYnqvl 1021
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1158 -------RASQREKTELLRKIWALE-------EENAKVVVQEKVREIVRPDPK----------AESEVANLRLELVEQER 1213
Cdd:COG3096 1022 aslkssrDAKQQTLQELEQELEELGvqadaeaEERARIRRDELHEELSQNRSRrsqlekqltrCEAEMDSLQKRLRKAER 1101
|
330 340
....*....|....*....|..
gi 578828140 1214 KYRGAEEQLRSYQSELEALRRR 1235
Cdd:COG3096 1102 DYKQEREQVVQAKAGWCAVLRL 1123
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1007-1283 |
4.65e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1007 VKEVLRIEPDRaQADEVLQ-LRE----ELEALRRQKgarEAEVLllqQRVAALAEEKSRAQEKVTE-KEVVKLQNDPQLE 1080
Cdd:PRK05771 6 MKKVLIVTLKS-YKDEVLEaLHElgvvHIEDLKEEL---SNERL---RKLRSLLTKLSEALDKLRSyLPKLNPLREEKKK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1081 AEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKvekdaATEREVSDLtrqYEDEAAKARAS 1160
Cdd:PRK05771 79 VSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWG-----NFDLDLSLL---LGFKYVSVFVG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1161 QREKTELLRKIWALEEENAKVVVQEKVRE--IVRPDPKAESEVANL--RLELVEQERKYRG-AEEQLRSYQSELEALRRr 1235
Cdd:PRK05771 151 TVPEDKLEELKLESDVENVEYISTDKGYVyvVVVVLKELSDEVEEElkKLGFERLELEEEGtPSELIREIKEELEEIEK- 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 578828140 1236 gpqvEVKEVTKEVIKYKTdpEMEKELQRLREEIvdktrLIERCDLEIY 1283
Cdd:PRK05771 230 ----ERESLLEELKELAK--KYLEELLALYEYL-----EIELERAEAL 266
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
1084-1200 |
4.75e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 41.33 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1084 QQLQEDHQRQDQLREKQEE--------ELSFLQDKLKRLEKERAMAEGKItvKEVLKVEKDAATEREVSDLTRQYEDEAA 1155
Cdd:PRK09510 68 QQQQKSAKRAEEQRKKKEQqqaeelqqKQAAEQERLKQLEKERLAAQEQK--KQAEEAAKQAALKQKQAEEAAAKAAAAA 145
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 578828140 1156 KARASQREKtellrkiwALEEENAKVVVQEKVREIVRPDPKAESE 1200
Cdd:PRK09510 146 KAKAEAEAK--------RAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1031-1183 |
5.22e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1031 EALRRQKGAREAEVLllqqRVAALAEEKSRAQEKVTEKEVVKLQNDPQ-LEAEYQQLQEDHQRQDQLREKQEEELSFLQD 1109
Cdd:COG2433 380 EALEELIEKELPEEE----PEAEREKEHEERELTEEEEEIRRLEEQVErLEAEVEELEAELEEKDERIERLERELSEARS 455
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578828140 1110 KLKRlekeramaegkitvkEVLKVEKDAATEREVSDLTRQYEDEAAKARASQReKTELLRKIWALEEENAKVVV 1183
Cdd:COG2433 456 EERR---------------EIRKDREISRLDREIERLERELEEERERIEELKR-KLERLKELWKLEHSGELVPV 513
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1311-1669 |
5.32e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 5.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1311 FQEDPQtkEEVASLRAKLSEeqkkqvdLERERASQEEQIARKEEELSRVKERVvqqEVVRyeeepGLRAEASAFAESiDV 1390
Cdd:COG3096 830 FAPDPE--AELAALRQRRSE-------LERELAQHRAQEQQLRQQLDQLKEQL---QLLN-----KLLPQANLLADE-TL 891
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1391 ELRqIDKLRAELRRLQrrrtelerqleelererqarrEAEREVQRLQQRLAALEqeeaearekvthTQKVVLQQDPQQar 1470
Cdd:COG3096 892 ADR-LEELREELDAAQ---------------------EAQAFIQQHGKALAQLE------------PLVAVLQSDPEQ-- 935
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1471 eHALLRLQLEEEQHRRQllegeleTLRRKLAAL-EKAEVKEKVVLSESVQVEKGDTEQEiQRLKSSLEEESRSKRELDVE 1549
Cdd:COG3096 936 -FEQLQADYLQAKEQQR-------RLKQQIFALsEVVQRRPHFSYEDAVGLLGENSDLN-EKLRARLEQAEEARREAREQ 1006
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1550 VSRLEARLSEL--EFHNSKSSKE--LDFLREenhklqLERQNLQLETrRLQSEINMAATETRDLRNMTVadsgTNHDSRL 1625
Cdd:COG3096 1007 LRQAQAQYSQYnqVLASLKSSRDakQQTLQE------LEQELEELGV-QADAEAEERARIRRDELHEEL----SQNRSRR 1075
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 578828140 1626 WSLERELDDLKRlskdkdlEIDELQKRLGSV----AVKREQRENHLRR 1669
Cdd:COG3096 1076 SQLEKQLTRCEA-------EMDSLQKRLRKAerdyKQEREQVVQAKAG 1116
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
982-1109 |
5.87e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 5.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 982 EELEALQLQLRALEQEtrdggqeyvvKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEvlllqqrvaaLAEEKSRA 1061
Cdd:COG0542 411 EELDELERRLEQLEIE----------KEALKKEQDEASFERLAELRDELAELEEELEALKAR----------WEAEKELI 470
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 578828140 1062 QEKVTEKEvvklqndpQLEAEYQQLQEDHQRQDQLREKQEEELSFLQD 1109
Cdd:COG0542 471 EEIQELKE--------ELEQRYGKIPELEKELAELEEELAELAPLLRE 510
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
937-1159 |
7.76e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.56 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 937 RNQGPQESVVRKEvlkKVPDPVLEESFQQLQRTLAEEQHK-NQLLQEELEALQLQLRALEQETRDGGQEYVVKEVlriep 1015
Cdd:PRK09510 66 RQQQQQKSAKRAE---EQRKKKEQQQAEELQQKQAAEQERlKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA----- 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1016 dRAQADEVLQLREELEALRRQKGAREAEvlllqqrvaalAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQ 1095
Cdd:PRK09510 138 -AAKAAAAAKAKAEAEAKRAAAAAKKAA-----------AEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEA 205
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578828140 1096 LREKqeeelsflqdKLKRLEKERAMAEGKItVKEVLKVEKDAATEREVSDLTRQYEDEAAKARA 1159
Cdd:PRK09510 206 EAKK----------KAAAEAKKKAAAEAKA-AAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1160-1459 |
8.75e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 8.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1160 SQREKTELLRKiwaLEEENAKVVVQEKVREIVRPDPKAESEVANlRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQV 1239
Cdd:pfam17380 285 SERQQQEKFEK---MEQERLRQEKEEKAREVERRRKLEEAEKAR-QAEMDRQAAIYAEQERMAMERERELERIRQEERKR 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1240 EVKEVTKEVIKYKTdpEMEKELQRLREEivdKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEILQFQEDPQTKE 1319
Cdd:pfam17380 361 ELERIRQEEIAMEI--SRMRELERLQME---RQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1320 EVASLRAKLS--------EEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLRAEASAFAESID-- 1389
Cdd:pfam17380 436 EVRRLEEERAremervrlEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERkr 515
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 578828140 1390 --VELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQK 1459
Cdd:pfam17380 516 klLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKA 587
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1472-1600 |
8.77e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 40.13 E-value: 8.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1472 HALLRLQLEEEQHRRQLLEGELETLRRKLAALeKAEVKEkvvLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVS 1551
Cdd:pfam09787 42 STALTLELEELRQERDLLREEIQKLRGQIQQL-RTELQE---LEAQQQEEAESSREQLQELEEQLATERSARREAEAELE 117
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 578828140 1552 RLEarlselefhnskssKELDFLREEnhkLQLERQNLQLETRRLQSEIN 1600
Cdd:pfam09787 118 RLQ--------------EELRYLEEE---LRRSKATLQSRIKDREAEIE 149
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1338-1561 |
8.99e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 8.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1338 LERERASQEEQIARKEEELSRVKERV--VQQEVVRYEEEPGLraeaSAFAESIDVELRQIDKLRAELRRLQRRRtelerq 1415
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELeeAEAALEEFRQKNGL----VDLSEEAKLLLQQLSELESQLAEARAEL------ 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578828140 1416 leelererqarREAEREVQRLQQRLAALEQEEAEAREKVTHTQkvVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELET 1495
Cdd:COG3206 236 -----------AEAEARLAALRAQLGSGPDALPELLQSPVIQQ--LRAQLAELEAELAELSARYTPNHPDVIALRAQIAA 302
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578828140 1496 LRRKLAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKREL-----DVEVSR-----LEARLSELE 1561
Cdd:COG3206 303 LRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELrrlerEVEVARelyesLLQRLEEAR 378
|
|
| |
