NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|755528958|ref|XP_011240868|]
View 

protein HIDE1 isoform X5 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ig_C19orf38 super family cl39264
Ig domain in C19orf38 (HIDE1); This entry represents an Ig domain found in the uncharacterized ...
 26-120 4.62e-44

Ig domain in C19orf38 (HIDE1); This entry represents an Ig domain found in the uncharacterized human protein C19orf38, which is found across mammals. Family members have one predicted transmembrane region which is not included in this entry. The C19orf38 protein is also known as HIDE1 after Highly expressed in Immature DEndritic cell transcript 1 protein.


The actual alignment was detected with superfamily member pfam17737:

Pssm-ID: 436003  Cd Length: 91  Bit Score: 143.03  E-value: 4.62e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528958   26 LVPPYPSSHEDPIYISCTAPGDILGANFTLFRGGEVVQLLQAPSDRPDVTFNVTGGGSGGGGEAaggnFCCQYGVMGEHS 105
Cdd:pfam17737   1 LVPPHPSSQEDPIHISCVAPRGFLGANFTLYRGGHVVQLLQAPADQLGVTFNLSGSSREAPGGQ----FHCQYSVMGEHS 76

                          90
                  ....*....|....*
gi 755528958  106 QPQLSDFSQQVQVSF 120
Cdd:pfam17737  77 QPQLSDLSKPVHVSF 91
 
Name Accession Description Interval E-value
Ig_C19orf38 pfam17737
Ig domain in C19orf38 (HIDE1); This entry represents an Ig domain found in the uncharacterized ...
 26-120 4.62e-44

Ig domain in C19orf38 (HIDE1); This entry represents an Ig domain found in the uncharacterized human protein C19orf38, which is found across mammals. Family members have one predicted transmembrane region which is not included in this entry. The C19orf38 protein is also known as HIDE1 after Highly expressed in Immature DEndritic cell transcript 1 protein.


Pssm-ID: 436003  Cd Length: 91  Bit Score: 143.03  E-value: 4.62e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528958   26 LVPPYPSSHEDPIYISCTAPGDILGANFTLFRGGEVVQLLQAPSDRPDVTFNVTGGGSGGGGEAaggnFCCQYGVMGEHS 105
Cdd:pfam17737   1 LVPPHPSSQEDPIHISCVAPRGFLGANFTLYRGGHVVQLLQAPADQLGVTFNLSGSSREAPGGQ----FHCQYSVMGEHS 76

                          90
                  ....*....|....*
gi 755528958  106 QPQLSDFSQQVQVSF 120
Cdd:pfam17737  77 QPQLSDLSKPVHVSF 91
 
Name Accession Description Interval E-value
Ig_C19orf38 pfam17737
Ig domain in C19orf38 (HIDE1); This entry represents an Ig domain found in the uncharacterized ...
 26-120 4.62e-44

Ig domain in C19orf38 (HIDE1); This entry represents an Ig domain found in the uncharacterized human protein C19orf38, which is found across mammals. Family members have one predicted transmembrane region which is not included in this entry. The C19orf38 protein is also known as HIDE1 after Highly expressed in Immature DEndritic cell transcript 1 protein.


Pssm-ID: 436003  Cd Length: 91  Bit Score: 143.03  E-value: 4.62e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528958   26 LVPPYPSSHEDPIYISCTAPGDILGANFTLFRGGEVVQLLQAPSDRPDVTFNVTGGGSGGGGEAaggnFCCQYGVMGEHS 105
Cdd:pfam17737   1 LVPPHPSSQEDPIHISCVAPRGFLGANFTLYRGGHVVQLLQAPADQLGVTFNLSGSSREAPGGQ----FHCQYSVMGEHS 76

                          90
                  ....*....|....*
gi 755528958  106 QPQLSDFSQQVQVSF 120
Cdd:pfam17737  77 QPQLSDLSKPVHVSF 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH