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Conserved domains on  [gi|755544864|ref|XP_011242731|]
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protein bicaudal D homolog 2 isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BicD super family cl25513
Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled ...
 23-618 0e+00

Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells.


The actual alignment was detected with superfamily member pfam09730:

Pssm-ID: 462863 [Multi-domain]  Cd Length: 717  Bit Score: 909.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   23 KVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNNLRKELSHYMSINDSFYTSHLQVSLD 102
Cdd:pfam09730 120 QVEFEGLKHEITRKEEETELLNSQLEEAIRLREIAERQLDEALETLKTEREQKNSLRKELSHYMTLNDFDYVSHLSISLD 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  103 GLKFSDD-TVTAEPNNDAEALvNGFEHS--GLVKSSLDNKTSTPRKDGLAPPSPSLVSDLLSELHISEIQKLKQQLVQME 179
Cdd:pfam09730 200 GLKFSEDeGAGTEPNNDGEAM-DGGENGggGLKNSGLDNRTSTPRKSEVFPPAPSLVSDLLSELNISEIQKLKQQLIQVE 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  180 REKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDGDYYEVDINGPEILA 259
Cdd:pfam09730 279 REKVSLLSTLQESQKQLEQAKGALSEQQEKVNRLTENLEAMRGLQASKERQDALDSEKDRDSHEDGDYYEVDINGPEILE 358

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  260 CKYHVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKASHQDRELLAHLEKELKKVSDVAGET 339
Cdd:pfam09730 359 CKYRVAVEEAGELREELKALKARYNTLEERYKEEKTRWEAEAQDLAEKIRQLEKASHQDQERIAHLEKELGKTRKVAGES 438

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  340 QGSLNVAQDELVTFSEELANLYHHVCMCNNETPNRVMLDYYREGQGK-AGRTSPEGRGRRSPVLLPKGLLATEVGRADGG 418
Cdd:pfam09730 439 EGSLSVAQDELVTFSEELANLYHHVCMCNNETPNRVMLDYYREGAGArARKSHQEPRGLRSPRLLTRGLFMGEVGTADTT 518

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  419 tGDNSPSPSSSLPSPLSDPRREPMNIYNLIAIIRDQIKHLQAAVDRTTELSRQRIASQELGPAVDKDKEALMEEILKLKS 498
Cdd:pfam09730 519 -SNSPSPCSSCPGSPTSDFRREPMNIYNLVAIIRDQIKHLQVAVDRTTELSRQRGAALELSTESDKDKEALMEEILKLKS 597

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  499 LLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEYITQL 578
Cdd:pfam09730 598 LLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEYVTQL 677

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|
gi 755544864  579 DEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLELLEL 618
Cdd:pfam09730 678 DEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLEDLEF 717
 
Name Accession Description Interval E-value
BicD pfam09730
Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled ...
 23-618 0e+00

Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells.


Pssm-ID: 462863 [Multi-domain]  Cd Length: 717  Bit Score: 909.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   23 KVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNNLRKELSHYMSINDSFYTSHLQVSLD 102
Cdd:pfam09730 120 QVEFEGLKHEITRKEEETELLNSQLEEAIRLREIAERQLDEALETLKTEREQKNSLRKELSHYMTLNDFDYVSHLSISLD 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  103 GLKFSDD-TVTAEPNNDAEALvNGFEHS--GLVKSSLDNKTSTPRKDGLAPPSPSLVSDLLSELHISEIQKLKQQLVQME 179
Cdd:pfam09730 200 GLKFSEDeGAGTEPNNDGEAM-DGGENGggGLKNSGLDNRTSTPRKSEVFPPAPSLVSDLLSELNISEIQKLKQQLIQVE 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  180 REKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDGDYYEVDINGPEILA 259
Cdd:pfam09730 279 REKVSLLSTLQESQKQLEQAKGALSEQQEKVNRLTENLEAMRGLQASKERQDALDSEKDRDSHEDGDYYEVDINGPEILE 358

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  260 CKYHVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKASHQDRELLAHLEKELKKVSDVAGET 339
Cdd:pfam09730 359 CKYRVAVEEAGELREELKALKARYNTLEERYKEEKTRWEAEAQDLAEKIRQLEKASHQDQERIAHLEKELGKTRKVAGES 438

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  340 QGSLNVAQDELVTFSEELANLYHHVCMCNNETPNRVMLDYYREGQGK-AGRTSPEGRGRRSPVLLPKGLLATEVGRADGG 418
Cdd:pfam09730 439 EGSLSVAQDELVTFSEELANLYHHVCMCNNETPNRVMLDYYREGAGArARKSHQEPRGLRSPRLLTRGLFMGEVGTADTT 518

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  419 tGDNSPSPSSSLPSPLSDPRREPMNIYNLIAIIRDQIKHLQAAVDRTTELSRQRIASQELGPAVDKDKEALMEEILKLKS 498
Cdd:pfam09730 519 -SNSPSPCSSCPGSPTSDFRREPMNIYNLVAIIRDQIKHLQVAVDRTTELSRQRGAALELSTESDKDKEALMEEILKLKS 597

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  499 LLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEYITQL 578
Cdd:pfam09730 598 LLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEYVTQL 677

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|
gi 755544864  579 DEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLELLEL 618
Cdd:pfam09730 678 DEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLEDLEF 717
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 167-331 2.08e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.21  E-value: 2.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   167 EIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDGD 246
Cdd:TIGR02168  240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   247 YYEVDIngpEILACKYHVAVAEAGELREQLKALRSTHEAREAQHAEEkgryEAEGQALTEKISLLEKASHQDRELLAHLE 326
Cdd:TIGR02168  320 ELEAQL---EELESKLDELAEELAELEEKLEELKEELESLEAELEEL----EAELEELESRLEELEEQLETLRSKVAQLE 392


                   ....*
gi 755544864   327 KELKK 331
Cdd:TIGR02168  393 LQIAS 397
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 167-343 2.55e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 50.71  E-value: 2.55e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 167 EIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDGD 246
Cdd:COG1196  240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 247 YYEVDIngpEILACKYHVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKASHQDRELLAHLE 326
Cdd:COG1196  320 ELEEEL---AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396

                        170
                 ....*....|....*..
gi 755544864 327 KELKKVSDVAGETQGSL 343
Cdd:COG1196  397 ELAAQLEELEEAEEALL 413
 
Name Accession Description Interval E-value
BicD pfam09730
Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled ...
 23-618 0e+00

Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells.


Pssm-ID: 462863 [Multi-domain]  Cd Length: 717  Bit Score: 909.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   23 KVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNNLRKELSHYMSINDSFYTSHLQVSLD 102
Cdd:pfam09730 120 QVEFEGLKHEITRKEEETELLNSQLEEAIRLREIAERQLDEALETLKTEREQKNSLRKELSHYMTLNDFDYVSHLSISLD 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  103 GLKFSDD-TVTAEPNNDAEALvNGFEHS--GLVKSSLDNKTSTPRKDGLAPPSPSLVSDLLSELHISEIQKLKQQLVQME 179
Cdd:pfam09730 200 GLKFSEDeGAGTEPNNDGEAM-DGGENGggGLKNSGLDNRTSTPRKSEVFPPAPSLVSDLLSELNISEIQKLKQQLIQVE 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  180 REKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDGDYYEVDINGPEILA 259
Cdd:pfam09730 279 REKVSLLSTLQESQKQLEQAKGALSEQQEKVNRLTENLEAMRGLQASKERQDALDSEKDRDSHEDGDYYEVDINGPEILE 358

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  260 CKYHVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKASHQDRELLAHLEKELKKVSDVAGET 339
Cdd:pfam09730 359 CKYRVAVEEAGELREELKALKARYNTLEERYKEEKTRWEAEAQDLAEKIRQLEKASHQDQERIAHLEKELGKTRKVAGES 438

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  340 QGSLNVAQDELVTFSEELANLYHHVCMCNNETPNRVMLDYYREGQGK-AGRTSPEGRGRRSPVLLPKGLLATEVGRADGG 418
Cdd:pfam09730 439 EGSLSVAQDELVTFSEELANLYHHVCMCNNETPNRVMLDYYREGAGArARKSHQEPRGLRSPRLLTRGLFMGEVGTADTT 518

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  419 tGDNSPSPSSSLPSPLSDPRREPMNIYNLIAIIRDQIKHLQAAVDRTTELSRQRIASQELGPAVDKDKEALMEEILKLKS 498
Cdd:pfam09730 519 -SNSPSPCSSCPGSPTSDFRREPMNIYNLVAIIRDQIKHLQVAVDRTTELSRQRGAALELSTESDKDKEALMEEILKLKS 597

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  499 LLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEYITQL 578
Cdd:pfam09730 598 LLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEYVTQL 677

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|
gi 755544864  579 DEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLELLEL 618
Cdd:pfam09730 678 DEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLEDLEF 717
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 167-331 2.08e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.21  E-value: 2.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   167 EIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDGD 246
Cdd:TIGR02168  240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   247 YYEVDIngpEILACKYHVAVAEAGELREQLKALRSTHEAREAQHAEEkgryEAEGQALTEKISLLEKASHQDRELLAHLE 326
Cdd:TIGR02168  320 ELEAQL---EELESKLDELAEELAELEEKLEELKEELESLEAELEEL----EAELEELESRLEELEEQLETLRSKVAQLE 392


                   ....*
gi 755544864   327 KELKK 331
Cdd:TIGR02168  393 LQIAS 397
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 167-343 2.55e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 50.71  E-value: 2.55e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 167 EIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDGD 246
Cdd:COG1196  240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 247 YYEVDIngpEILACKYHVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKASHQDRELLAHLE 326
Cdd:COG1196  320 ELEEEL---AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396

                        170
                 ....*....|....*..
gi 755544864 327 KELKKVSDVAGETQGSL 343
Cdd:COG1196  397 ELAAQLEELEEAEEALL 413
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 166-331 3.29e-06

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 48.77  E-value: 3.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 166 SEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALR-RLQAGKERQTSLDNEKDRDSHED 244
Cdd:COG1579   17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEaRIKKYEEQLGNVRNNKEYEALQK 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 245 gdyyEVDINGPEILACKYHV--AVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKAShqdRELL 322
Cdd:COG1579   97 ----EIESLKRRISDLEDEIleLMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAER---EELA 169


                 ....*....
gi 755544864 323 AHLEKELKK 331
Cdd:COG1579  170 AKIPPELLA 178
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 166-361 6.05e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.47  E-value: 6.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 166 SEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDG 245
Cdd:COG1196  267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 246 DYYEVDINGPEilackyhVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKASHQDRELLAHL 325
Cdd:COG1196  347 EEAEEELEEAE-------AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 755544864 326 EKELKKVSDVAGETQGSLNVAQDELVTFSEELANLY 361
Cdd:COG1196  420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 167-334 1.12e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.14  E-value: 1.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 167 EIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAgkERQTSLDNEKDR------- 239
Cdd:COG4942   35 EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA--ELRAELEAQKEElaellra 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 240 --------------------DSHEDGDYYEVDINGPEILACKYHVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEA 299
Cdd:COG4942  113 lyrlgrqpplalllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEA 192

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 755544864 300 EGQALTEKISLLEKASHQDRELLAHLEKELKKVSD 334
Cdd:COG4942  193 LKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
157-621 1.01e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.45  E-value: 1.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 157 SDLLSELHISEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALR-RLQAGKERQTSLDN 235
Cdd:COG4717   37 STLLAFIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEeELEELEAELEELRE 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 236 EKDRDSHEDGDYYevdingpeiLACKYHVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKAS 315
Cdd:COG4717  117 ELEKLEKLLQLLP---------LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLS 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 316 HQDRELLAHLEKELKKVSDVAGETQGSLNVAQDELVTFSEELANLyhhvcmcNNETPNRVMLDYYREGQGKAGRTS---- 391
Cdd:COG4717  188 LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL-------ENELEAAALEERLKEARLLLLIAAalla 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 392 --PEGRGRRSPVLLPKGLLATEVGRADGGtgdnsPSPSSSLPSPLSDPRREPMNIYNLIAIIRDQIKHLQAAVDRTTELS 469
Cdd:COG4717  261 llGLGGSLLSLILTIAGVLFLVLGLLALL-----FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLS 335

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 470 RQRIasqelgpavdkdkEALMEEILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKSKYE-NEKAMVTETMMKLRN 548
Cdd:COG4717  336 PEEL-------------LELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEElRAALEQAEEYQELKE 402

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755544864 549 ELKALKE--DAATFSSLRAMFATRCDEYITQLDEMQRQLAAAEDEKKTLnsllrmaIQQKLALTQRLELLELDHE 621
Cdd:COG4717  403 ELEELEEqlEELLGELEELLEALDEEELEEELEELEEELEELEEELEEL-------REELAELEAELEQLEEDGE 470
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 451-630 1.48e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.97  E-value: 1.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   451 IRDQIKHLQAA--VDRTTELSRQRIASQElgpavdkDKEALMEEILKLKSLLSTKREQITTLRTVLKANKQTAEVALANL 528
Cdd:TIGR02168  218 LKAELRELELAllVLRLEELREELEELQE-------ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   529 KSKYeNEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEYITQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLA 608
Cdd:TIGR02168  291 YALA-NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369

                          170       180
                   ....*....|....*....|..
gi 755544864   609 LTQRLELLELDHEQTRRGRSKA 630
Cdd:TIGR02168  370 LESRLEELEEQLETLRSKVAQL 391
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 162-360 1.63e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 1.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 162 ELHISEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQTsLDNEKDRDS 241
Cdd:COG1196  305 ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL-AEAEEELEE 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 242 HEDgdyyevdingpEILACKyhVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKASHQDREL 321
Cdd:COG1196  384 LAE-----------ELLEAL--RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 755544864 322 LAHLEKELKKVSDVAGETQGSLNVAQDELVTFSEELANL 360
Cdd:COG1196  451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 169-361 1.73e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 1.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 169 QKLKQQLvqMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTEnlsALRRLQAGKERQTSLDNEKDRDSHEDGDyy 248
Cdd:COG1196  216 RELKEEL--KELEAELLLLKLRELEAELEELEAELEELEAELEELEA---ELAELEAELEELRLELEELELELEEAQA-- 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 249 evdingpeilacKYHVAVAEAGELREQLKALrsthEAREAQHAEEKGRYEAEGQALTEKISLLEKASHQDRELLAHLEKE 328
Cdd:COG1196  289 ------------EEYELLAELARLEQDIARL----EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352

                        170       180       190
                 ....*....|....*....|....*....|...
gi 755544864 329 LKKVSDVAGETQGSLNVAQDELVTFSEELANLY 361
Cdd:COG1196  353 LEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 29-360 2.05e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.58  E-value: 2.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864    29 LKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNNLRKELSHymsindsfytshLQVSLDGLKFSD 108
Cdd:TIGR02168  696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ------------LSKELTELEAEI 763

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   109 DTVTAEPNNDAEALVNGFEHSGLVKSSLDN-----KTSTPRKDGLappspslvSDLLSELHIsEIQKLKQQLVQMEREKV 183
Cdd:TIGR02168  764 EELEERLEEAEEELAEAEAEIEELEAQIEQlkeelKALREALDEL--------RAELTLLNE-EAANLRERLESLERRIA 834

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   184 GLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRR-LQAGKERQTSLdnEKDRDSHEDGDyyevdingpEILACKY 262
Cdd:TIGR02168  835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESeLEALLNERASL--EEALALLRSEL---------EELSEEL 903

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   263 HVAVAEAGELREQLKALRstheAREAQHAEEKGRYEAEGQALTEKISllekaSHQDRELLAHLEKELKKVSDVAGetqgs 342
Cdd:TIGR02168  904 RELESKRSELRRELEELR----EKLAQLELRLEGLEVRIDNLQERLS-----EEYSLTLEEAEALENKIEDDEEE----- 969

                          330
                   ....*....|....*...
gi 755544864   343 lnvAQDELVTFSEELANL 360
Cdd:TIGR02168  970 ---ARRRLKRLENKIKEL 984
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 443-635 2.23e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 2.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   443 NIYNLIAIIRDQIKHLQAAVDR-----------TTELSRQRIASQELGPAVDKDKEALMEEILKLKSLLSTKREQittlR 511
Cdd:TIGR02168  292 ALANEISRLEQQKQILRERLANlerqleeleaqLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE----L 367

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   512 TVLKANKQTAEVALANLKSKY---ENEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEyiTQLDEMQRQLAAA 588
Cdd:TIGR02168  368 EELESRLEELEEQLETLRSKVaqlELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEEL 445

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 755544864   589 EDEKKTLNSLLRMAIQQKLALTQRLELLELDHEQTRRGRSKAASKAK 635
Cdd:TIGR02168  446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 32-315 2.37e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 2.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864    32 EIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNNLRKELSHYMSINDSFYT--SHLQVSLDGLKFSDD 109
Cdd:TIGR02168  233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANeiSRLEQQKQILRERLA 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   110 TVTAEPNNDAEALVNGFehsglvkssldnktstprkdglappspslvsdllselhiSEIQKLKQQLVQMEREKVGLLATL 189
Cdd:TIGR02168  313 NLERQLEELEAQLEELE---------------------------------------SKLDELAEELAELEEKLEELKEEL 353

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   190 QDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQ-TSLDNE--------KDRDSHEDGDYYEVDINGPEILAC 260
Cdd:TIGR02168  354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQiASLNNEierlearlERLEDRRERLQQEIEELLKKLEEA 433

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 755544864   261 KYHVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKAS 315
Cdd:TIGR02168  434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 158-360 2.76e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.08  E-value: 2.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 158 DLLSELHISEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALR-RLQAGKERQTSLDNE 236
Cdd:COG1196  217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELElELEEAQAEEYELLAE 296

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 237 KDRdSHEDGDYYEVDIngpeilackyhvavAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKASH 316
Cdd:COG1196  297 LAR-LEQDIARLEERR--------------RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 755544864 317 QDRELLAHLEKELKKVSDVAGETQGSLNVAQDELVTFSEELANL 360
Cdd:COG1196  362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 167-360 3.21e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 40.71  E-value: 3.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  167 EIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARgtlsEQHEKVNRLTENLSAL-------RRLQAGKERQTSLDNEKDR 239
Cdd:COG3096   837 ELAALRQRRSELERELAQHRAQEQQLRQQLDQLK----EQLQLLNKLLPQANLLadetladRLEELREELDAAQEAQAFI 912

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  240 DSHEDG--------DYYEVDINGPEILACKYHVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKI-SL 310
Cdd:COG3096   913 QQHGKAlaqleplvAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNEKLrAR 992

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 755544864  311 LEKASHQDRELLAHLEKELKKVSD---VAGETQGSLNVAQDELVTFSEELANL 360
Cdd:COG3096   993 LEQAEEARREAREQLRQAQAQYSQynqVLASLKSSRDAKQQTLQELEQELEEL 1045
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 32-331 3.21e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.81  E-value: 3.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864    32 EIKRLEEETEylnsQLEDAIRLKEISERQLEEALETLKTEREQKNNLRKELSHymsindsfytshlqvSLDGLKFSDDTV 111
Cdd:TIGR02168  678 EIEELEEKIE----ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR---------------QISALRKDLARL 738

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   112 TAEPNNDAEALVNgfehsglvkSSLDNKTSTPRKDGLAppspslvsdllselhiSEIQKLKQQLVQMEREKVGLLATLQD 191
Cdd:TIGR02168  739 EAEVEQLEERIAQ---------LSKELTELEAEIEELE----------------ERLEEAEEELAEAEAEIEELEAQIEQ 793

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   192 TQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDGDYYEVDIngpEILACKYHVAVAEAGE 271
Cdd:TIGR02168  794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI---ESLAAEIEELEELIEE 870

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755544864   272 LREQLKAL---RSTHEAREAQHAEEKGRYEAEGQALTEKISLLEKASHQDRELLAHLEKELKK 331
Cdd:TIGR02168  871 LESELEALlneRASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
164-360 3.50e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 3.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  164 HISEIQKLKQQLVQmEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTEnLSALRRLQAGKERQTSLDNEKDRdsHE 243
Cdd:COG4913   233 HFDDLERAHEALED-AREQIELLEPIRELAERYAAARERLAELEYLRAALRL-WFAQRRLELLEAELEELRAELAR--LE 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864  244 DgdyyEVDINGPEILACKYHVAVAEA------GELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKISL----LEK 313
Cdd:COG4913   309 A----ELERLEARLDALREELDELEAqirgngGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPAsaeeFAA 384

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 755544864  314 ASHQDRELLAHLEKELKKVSDVAGETQGSLNVAQDELVTFSEELANL 360
Cdd:COG4913   385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 166-360 5.81e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.36  E-value: 5.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 166 SEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSAL--------RRLQAGKERQTSLDNEK 237
Cdd:COG4942   20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALeqelaaleAELAELEKEIAELRAEL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864 238 DRDSHEDGD-----YYEVDINGPEILackyhVAVAEAGELREQLKALRSTHEAREAQHAEekgrYEAEGQALTEKISLLE 312
Cdd:COG4942  100 EAQKEELAEllralYRLGRQPPLALL-----LSPEDFLDAVRRLQYLKYLAPARREQAEE----LRADLAELAALRAELE 170

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 755544864 313 KASHQDRELLAHLEKELKKVSDVAGETQGSLNVAQDELVTFSEELANL 360
Cdd:COG4942  171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL 218
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 166-360 6.19e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 6.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   166 SEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVNRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDG 245
Cdd:TIGR02168  295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755544864   246 DYYEVDINGpeiLACKYHVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTE-KISLLEKASHQDRELLAH 324
Cdd:TIGR02168  375 EELEEQLET---LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEE 451

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 755544864   325 LEKELKKVSDVAGETQGSLNVAQDELVTFSEELANL 360
Cdd:TIGR02168  452 LQEELERLEEALEELREELEEAEQALDAAERELAQL 487
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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