|
Name |
Accession |
Description |
Interval |
E-value |
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
110-855 |
0e+00 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 1118.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 110 MAPTWASDVPLVQSPASQDVLERRLDAQRSTVTTWGQDFCGDGQGLGRRGRSLELGFSSALSQQAELISRQLQELRRLEE 189
Cdd:pfam07111 1 MAPTWASDIPLVQSPGHQDVLERRLDTQRPTVTMWEQDVSGDGQGPGRRGRSLELEGSQALSQQAELISRQLQELRRLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 190 EVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQEQLSSLTQAH 269
Cdd:pfam07111 81 EVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 270 QKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQVLPEFPSQEW 349
Cdd:pfam07111 161 EEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTW 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 350 ELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMV 429
Cdd:pfam07111 241 ELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 430 QLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAE 509
Cdd:pfam07111 321 QLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 510 EQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSEAAPPLDTDLS 589
Cdd:pfam07111 401 EQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 590 VELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEE 669
Cdd:pfam07111 481 LELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEE 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 670 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEAR 749
Cdd:pfam07111 561 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEAR 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 750 KEEGQRLTRRVQELERDKNLMLATLKQEGLLFCYKQQRLLAVLPSGVNKKCSPRS---VESSSSESPAAASCKESVKGSL 826
Cdd:pfam07111 641 KEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLDKKSVVSSprpECSASAPIPAAVPTRESIKGSL 720
|
730 740
....*....|....*....|....*....
gi 755556638 827 TVLLDNLQGLSEAISRDEDICVEDNQNTK 855
Cdd:pfam07111 721 TVLLDNLQGLSEAISREEAVCQEDNQDTC 749
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
182-766 |
6.54e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.39 E-value: 6.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 182 QELRRLEEEVRSLRETSLQQkmRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQE- 260
Cdd:COG1196 220 EELKELEAELLLLKLRELEA--ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEl 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 261 -QLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQ 339
Cdd:COG1196 298 aRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 340 VlpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQpldplepefpkkcrslLRN 419
Cdd:COG1196 378 E------EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE----------------LEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 420 WREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVErmstksLQMELDQAQEARR 499
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL------LEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 500 RQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSE 579
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 580 AAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEvaqQLEQELQRAQESLASVGQQLEAA 659
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA---GRLREVTLEGEGGSAGGSLTGGS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 660 RRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQ 739
Cdd:COG1196 667 RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
570 580
....*....|....*....|....*....
gi 755556638 740 ELRRLQDEARKEEGQR--LTRRVQELERD 766
Cdd:COG1196 747 LLEEEALEELPEPPDLeeLERELERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
177-779 |
1.78e-17 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 87.89 E-value: 1.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 177 ISRQLQELRRLEE-----EVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKE- 250
Cdd:PTZ00121 1168 EARKAEDAKKAEAarkaeEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEe 1247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 251 ---------LEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKS---LNSLETKRAGEAKQLAMAQKEADMLRNQLSKT 318
Cdd:PTZ00121 1248 ernneeirkFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 319 QEELEAQVTLVESLRKyVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRK 398
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKK-AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 399 IQPLDPLEPEfPKKCRSLLRNWREKVFALMVQLKAQDLQHRDstsqlriqvaELQEQVTSQSQEQAILQRALQDKTAQVE 478
Cdd:PTZ00121 1407 ADELKKAAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKAD----------EAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 479 VERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVAripSLSNRLSYAVRKVHTIK 558
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK---ADEAKKAEEKKKADELK 1552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 559 GLMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEV---------ERR 629
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIkaeelkkaeEEK 1632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 630 RLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETR-----LREQLS 704
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaeeLKKKEA 1712
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755556638 705 DTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRlqDEARKEEGQRLTRRVQELERDKNLMLATLKQEGL 779
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK--DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
168-712 |
1.11e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 1.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 168 SALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAK 247
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 248 HKELEEIQSLHQEQlssltQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVT 327
Cdd:COG1196 382 EELAEELLEALRAA-----AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 328 LVESLRKyvgeqvlpefpsqewelERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEP 407
Cdd:COG1196 457 EEEALLE-----------------LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 408 EFPKKCRSLLRNWREKVFALMVQLKAqdlqhrdstsqlriqvAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSL 487
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALA----------------AALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 488 QMELDQAQEARRRQEQQIASAEEQLkfvvgamnstqaklqstmtrmDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVAL 567
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDL---------------------READARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 568 AQLRVESsppSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQE 647
Cdd:COG1196 643 AGRLREV---TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755556638 648 slasvgQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNE 712
Cdd:COG1196 720 ------ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
170-767 |
2.85e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 2.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 170 LSQQAElisrQLQELRRLEEEVRSLRETSLqqKMRLETQAVELDALAVAEKAGQAEAEGLRTALAgaemvrknleeAKHK 249
Cdd:TIGR02168 205 LERQAE----KAERYKELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAELQ-----------ELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 250 ELEEIQSLHQEqLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLV 329
Cdd:TIGR02168 268 KLEELRLEVSE-LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 330 ESLRKYVGEQV--LPEFPSQEWELERK--ELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPL 405
Cdd:TIGR02168 347 EELKEELESLEaeLEELEAELEELESRleELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 406 EPEFPKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQ---RALQDKTAQVEVERM 482
Cdd:TIGR02168 427 LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarlDSLERLQENLEGFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 483 STKSLQMELDQAQEARRRQEQQIASAE-----------EQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAV 551
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVLSELISVDEgyeaaieaalgGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 552 RKVHTIKGLMARKVALAQLRVESSPPsEAAPPLD---------TDLSVELEQLREERNR-----LDAELqLSAHLIQQEV 617
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKDLVKFDP-KLRKALSyllggvlvvDDLDNALELAKKLRPGyrivtLDGDL-VRPGGVITGG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 618 GRAREQGEVERRRLIEvaqQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQ-QQEIYGQALQEKVAEVE 696
Cdd:TIGR02168 665 SAKTNSSILERRREIE---ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEElSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 697 ---------------TRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKE------EGQR 755
Cdd:TIGR02168 742 veqleeriaqlskelTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllneEAAN 821
|
650
....*....|..
gi 755556638 756 LTRRVQELERDK 767
Cdd:TIGR02168 822 LRERLESLERRI 833
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
179-769 |
4.49e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.64 E-value: 4.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 179 RQLQELRRlEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAE----------AEGLRTA--LAGAEMVRKNLEEA 246
Cdd:PTZ00121 1128 RKAEEARK-AEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEdakkaeaarkAEEVRKAeeLRKAEDARKAEAAR 1206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 247 KHKELEEIQSLHQEQLSSLTQAHQKALDSL--ASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEA 324
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKAEAVKKAEEAKkdAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA 1286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 325 -QVTLVESLRKYVGEQVLPEFPSQEWELERKElldtlkHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKiqpLD 403
Cdd:PTZ00121 1287 eEKKKADEAKKAEEKKKADEAKKKAEEAKKAD------EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA---AD 1357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 404 PLEPEFPKKCRSLLRNWREKVFALMVQLKAQDLQHRDstsQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMS 483
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD---EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD 1434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 484 tkslqmELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTikglmAR 563
Cdd:PTZ00121 1435 ------EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE-----AK 1503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 564 KVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRldAELQLSAhliqQEVGRAREQGEVERRRLIEVAQQLEQELQ 643
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK--AEEKKKA----DELKKAEELKKAEEKKKAEEAKKAEEDKN 1577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 644 RAQESlASVGQQLEAARRGQ--QESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQL----SDTKRRLNEARREQ 717
Cdd:PTZ00121 1578 MALRK-AEEAKKAEEARIEEvmKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLkkkeAEEKKKAEELKKAE 1656
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 755556638 718 AKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQrLTRRVQELERDKNL 769
Cdd:PTZ00121 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA-LKKEAEEAKKAEEL 1707
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
439-793 |
4.85e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 4.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 439 RDSTSQLRIQVAELQEQVtsqsqEQAILQRALQDKTAQVEVErmstkSLQMELDQAQEARRRQEQQIASAEEQLKFVVGA 518
Cdd:COG1196 192 EDILGELERQLEPLERQA-----EKAERYRELKEELKELEAE-----LLLLKLRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 519 MNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQlrvessppseaappldtDLSVELEQLREE 598
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR-----------------ELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 599 RNRLDAELQLsahlIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELT 678
Cdd:COG1196 325 LAELEEELEE----LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 679 QQQEIYGQA-----LQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEG 753
Cdd:COG1196 401 QLEELEEAEealleRLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 755556638 754 QRLTRRVQELERDKNLMLATLKQEGLLFCYKQQRLLAVLP 793
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
169-768 |
2.55e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 2.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 169 ALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKH 248
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 249 KELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTL 328
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 329 VESLRKY--------------------VGEQVLPEfpsQEWELERKELL----------------DTLKHLKEDRADLQA 372
Cdd:TIGR02168 498 QENLEGFsegvkallknqsglsgilgvLSELISVD---EGYEAAIEAALggrlqavvvenlnaakKAIAFLKQNELGRVT 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 373 TVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEpEFPKKCRSLLRNWREKVF---------ALMVQLKAQ--------D 435
Cdd:TIGR02168 575 FLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLV-KFDPKLRKALSYLLGGVLvvddldnalELAKKLRPGyrivtldgD 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 436 LQHRD------------STSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEvermstkSLQMELDQAQEARRRQEQ 503
Cdd:TIGR02168 654 LVRPGgvitggsaktnsSILERRREIEELEEKIEELEEKIAELEKALAELRKELE-------ELEEELEQLRKELEELSR 726
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 504 QIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKglmaRKVALAQLRVEssppseaapp 583
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE----AEIEELEAQIE---------- 792
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 584 ldtDLSVELEQLREERNRLDAELQLSAHLIQQeVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQ 663
Cdd:TIGR02168 793 ---QLKEELKALREALDELRAELTLLNEEAAN-LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 664 QESTEEAASLRQELTQQQEIYGQA------LQEKVAEVETR---LREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQE 734
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLrseleeLSEELRELESKrseLRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
650 660 670
....*....|....*....|....*....|....
gi 755556638 735 KERNQELRRLQDEARKEEGQRLTRRVQELERDKN 768
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
172-772 |
1.43e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 65.38 E-value: 1.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 172 QQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEglrTALAGAEMVRKNLEEAKHKEL 251
Cdd:TIGR00618 307 QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHE---VATSIREISCQQHTLTQHIHT 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 252 EEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKT-QEELEAQVTLVE 330
Cdd:TIGR00618 384 LQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTaQCEKLEKIHLQE 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 331 SLRKYVgeqvlpefpsqewelERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFP 410
Cdd:TIGR00618 464 SAQSLK---------------EREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTR 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 411 KKCRSLLRNWR-----EKVFALMV-------QLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQdktAQVE 478
Cdd:TIGR00618 529 RMQRGEQTYAQletseEDVYHQLTserkqraSLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTE---KLSE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 479 VERMSTKSLQMELDQAQEA----RRRQEQQIASAEEQLKFvvgamnSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKV 554
Cdd:TIGR00618 606 AEDMLACEQHALLRKLQPEqdlqDVRLHLQQCSQELALKL------TALHALQLTLTQERVREHALSIRVLPKELLASRQ 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 555 HTIKGLMARKVALAQLRVESSPPSEAAPPLDT---DLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRL 631
Cdd:TIGR00618 680 LALQKMQSEKEQLTYWKEMLAQCQTLLRELEThieEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR 759
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 632 IEVAQQLEQE----LQRAQEsLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQAL---QEKVAEVETRLREQLS 704
Cdd:TIGR00618 760 TEAHFNNNEEvtaaLQTGAE-LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILnlqCETLVQEEEQFLSRLE 838
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755556638 705 DTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKE---EGQRLTRRVQELERDKNLMLA 772
Cdd:TIGR00618 839 EKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKiqfDGDALIKFLHEITLYANVRLA 909
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
114-534 |
1.89e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 1.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 114 WASDVPLVQSPASQDVLERRLDAQRSTVTTwgqdfcgDGQGLGRRGRSL---ELGFSSALSQQaelisrqlQELRRLEEE 190
Cdd:TIGR02168 621 LLGGVLVVDDLDNALELAKKLRPGYRIVTL-------DGDLVRPGGVITggsAKTNSSILERR--------REIEELEEK 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 191 VRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQEQLSSLTQahq 270
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE--- 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 271 kaLDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAqvTLVESLRKYVGEQVLpEFPSQEWE 350
Cdd:TIGR02168 763 --IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL--LNEEAANLRERLESL-ERRIAATE 837
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 351 LERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKcRSLLRNWREKVFALMVQ 430
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL-SEELRELESKRSELRRE 916
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 431 LKAQDLQHRDST---SQLRIQVAELQEQVTSQSQ--EQAILQRALQDKTAQVEVERmSTKSLQMELDQAQEARRRQEQQI 505
Cdd:TIGR02168 917 LEELREKLAQLElrlEGLEVRIDNLQERLSEEYSltLEEAEALENKIEDDEEEARR-RLKRLENKIKELGPVNLAAIEEY 995
|
410 420 430
....*....|....*....|....*....|..
gi 755556638 506 ASAEEQLKFVVGAM---NSTQAKLQSTMTRMD 534
Cdd:TIGR02168 996 EELKERYDFLTAQKedlTEAKETLEEAIEEID 1027
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
299-712 |
4.93e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 4.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 299 KQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKyvgeqvlpefpsQEWELERKelldtLKHLKEDRADLQATVELLQ 378
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRK------------ELEELSRQ-----ISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 379 VRVQSLTHMLALQEEELTRKIQPLDPLEPEFpkkcrsllrnwrEKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTS 458
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEEL------------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 459 QSQEQAILQRALQDKTAQVEvermstkSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVA 538
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIA-------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 539 RIPSLSNRLSYAVRKVHTIKGLMarkvalaqlrvessppseaappldTDLSVELEQLREERNRLDAELQLSAHLIQQEVG 618
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKR------------------------SELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 619 RAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASL---RQELTQQQEIYGQA---LQEKV 692
Cdd:TIGR02168 944 RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELkerYDFLTAQKEDLTEAketLEEAI 1023
|
410 420
....*....|....*....|
gi 755556638 693 AEVETRLREQLSDTKRRLNE 712
Cdd:TIGR02168 1024 EEIDREARERFKDTFDQVNE 1043
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
440-751 |
1.48e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 440 DSTSQLRIQVAELQEQVtsqsqEQAILQRALQD--KTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVG 517
Cdd:TIGR02168 193 DILNELERQLKSLERQA-----EKAERYKELKAelRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 518 AMNSTQAKLQSTMTRMDQAVARIPSLSNRLSyavRKVHTIKGLMARKVALAQLRVESSPPSEAAPP-------LDTDLSV 590
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEIS---RLEQQKQILRERLANLERQLEELEAQLEELESkldelaeELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 591 ELEQLREERNRLDAELQlSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEA 670
Cdd:TIGR02168 345 KLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 671 ASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARK 750
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
.
gi 755556638 751 E 751
Cdd:TIGR02168 504 F 504
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
352-767 |
1.75e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 352 ERKELLDTLKHLKEDRADLQATV-------ELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEfpkkcrsllrnwREKV 424
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIaetererEELAEEVRDLRERLEELEEERDDLLAEAGLDDAD------------AEAV 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 425 FALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQ-RA--LQDKTAQVEVERMSTKSlqmELDQAQEARRRQ 501
Cdd:PRK02224 313 EARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEeRAeeLREEAAELESELEEARE---AVEDRREEIEEL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 502 EQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLM-ARKVALAQLRVESSPPSEA 580
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLeAGKCPECGQPVEGSPHVET 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 581 APPLD---TDLSVELEQLREERNRLDAELQlsahliqqevgRAREQGEVERR--RLIEVAQQLEQELQRAQESLASVGQQ 655
Cdd:PRK02224 470 IEEDRervEELEAELEDLEEEVEEVEERLE-----------RAEDLVEAEDRieRLEERREDLEELIAERRETIEEKRER 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 656 LEAARRGQQESTEEAASLRqELTQQQEIYGQALQEKVAEVETRlREQLSDTKRRLN------EARREQAKAVVSLR-QIQ 728
Cdd:PRK02224 539 AEELRERAAELEAEAEEKR-EAAAEAEEEAEEAREEVAELNSK-LAELKERIESLErirtllAAIADAEDEIERLReKRE 616
|
410 420 430
....*....|....*....|....*....|....*....
gi 755556638 729 HKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDK 767
Cdd:PRK02224 617 ALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDK 655
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
235-777 |
2.36e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.21 E-value: 2.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 235 GAEMVRKNLEEAKHkeleEIQSLhQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQ 314
Cdd:pfam15921 72 GKEHIERVLEEYSH----QVKDL-QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 315 LSKTQEELEAQVTLVESLRKYVGEQVlpefpsqewELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEE 394
Cdd:pfam15921 147 LQNTVHELEAAKCLKEDMLEDSNTQI---------EQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRS 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 395 LTRKIQP-LDPLEPEFpkkcrSLLRNwreKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQailqraLQDK 473
Cdd:pfam15921 218 LGSAISKiLRELDTEI-----SYLKG---RIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVE------ITGL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 474 TAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKfvvgamnSTQAKLQSTMTRMDQavaripslsnrlSYAVRK 553
Cdd:pfam15921 284 TEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE-------STVSQLRSELREAKR------------MYEDKI 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 554 VHTIKGLMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERR---R 630
Cdd:pfam15921 345 EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRElddR 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 631 LIEVaQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQ--LSDTKR 708
Cdd:pfam15921 425 NMEV-QRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtVSDLTA 503
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755556638 709 RLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDKnlMLATLKQE 777
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDK--VIEILRQQ 570
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
469-720 |
4.19e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 4.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 469 ALQDKTAQVEVERmstKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLS 548
Cdd:COG4942 17 AQADAAAEAEAEL---EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 549 YAVRKVHTIKGLMARKVALAQLRVESSPPSEAAPPldtdlsveleqlrEERNRLDAELQLSAHLIQQEVGRAREQgever 628
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSP-------------EDFLDAVRRLQYLKYLAPARREQAEEL----- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 629 RRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvETRLREQLSDTKR 708
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE-AEELEALIARLEA 234
|
250
....*....|..
gi 755556638 709 RLNEARREQAKA 720
Cdd:COG4942 235 EAAAAAERTPAA 246
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
352-766 |
7.40e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 7.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 352 ERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQE-----EELTRKIQPLDPLEPEFPKKcrslLRNWREkvfa 426
Cdd:COG4717 89 EYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyqelEALEAELAELPERLEELEER----LEELRE---- 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 427 LMVQLKAQDLQHRdstsQLRIQVAELQEQVTSQSQEQailqraLQDKTAQVEvermstkSLQMELDQAQEARRRQEQQIA 506
Cdd:COG4717 161 LEEELEELEAELA----ELQEELEELLEQLSLATEEE------LQDLAEELE-------ELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 507 SAEEQLKFVVGAMNSTQAKLQ-STMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQL--------RVESSPP 577
Cdd:COG4717 224 ELEEELEQLENELEAAALEERlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALlflllareKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 578 SEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQ-QLEQELQRAQESLASVGQQL 656
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEElQLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 657 EAARRGQQESTEEAASLRQELTQQQE----IYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKaT 732
Cdd:COG4717 384 EEELRAALEQAEEYQELKEELEELEEqleeLLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAE-L 462
|
410 420 430
....*....|....*....|....*....|....
gi 755556638 733 QEKERNQELRRLQDEArkeegQRLTRRVQELERD 766
Cdd:COG4717 463 EQLEEDGELAELLQEL-----EELKAELRELAEE 491
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
170-504 |
7.43e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 7.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 170 LSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAE----AEGLRTA--LAGAEMVRKnL 243
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkkADELKKAeeLKKAEEKKK-A 1566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 244 EEAKHKELEEIQSLHQEQLssLTQAHQKALDSLASKAEGlEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELE 323
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEE--AKKAEEARIEEVMKLYEE-EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 324 AQVTLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVEllqvrvqslthmlalQEEELTRKIQPLD 403
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK---------------KEAEEAKKAEELK 1708
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 404 PLEPEFPKKCRSLLRNWREKvfalmvQLKAQDLQHRDSTSQLRIQVAELQEQvtsqsQEQAILQRALQDKTAQVEVERMS 483
Cdd:PTZ00121 1709 KKEAEEKKKAEELKKAEEEN------KIKAEEAKKEAEEDKKKAEEAKKDEE-----EKKKIAHLKKEEEKKAEEIRKEK 1777
|
330 340
....*....|....*....|.
gi 755556638 484 TKSLQMELDQAQEARRRQEQQ 504
Cdd:PTZ00121 1778 EAVIEEELDEEDEKRRMEVDK 1798
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
449-761 |
2.43e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 54.96 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 449 VAELQEQVTSQ---SQEQAILQRALQDKTAQVEVERMSTKS----LQMELDqAQEARRRQEQQIASAEEQLKFVVGAMNS 521
Cdd:PRK04863 357 LEELEERLEEQnevVEEADEQQEENEARAEAAEEEVDELKSqladYQQALD-VQQTRAIQYQQAVQALERAKQLCGLPDL 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 522 TQAKLQstmTRMDQAVARIPSLSNRLSYAVRKV---HTIKGLMARKVALAQLRVESSPPSEAAppldtDLSVE-LEQLRE 597
Cdd:PRK04863 436 TADNAE---DWLEEFQAKEQEATEELLSLEQKLsvaQAAHSQFEQAYQLVRKIAGEVSRSEAW-----DVARElLRRLRE 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 598 ERNRLDAELQLSAHLIQQEvGRAREQGEVERRrLIEVAQQLEQELQRAQEsLASVGQQLEAARRGQQESTEEAASLRQEL 677
Cdd:PRK04863 508 QRHLAEQLQQLRMRLSELE-QRLRQQQRAERL-LAEFCKRLGKNLDDEDE-LEQLQEELEARLESLSESVSEARERRMAL 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 678 TQQQEiygqALQEKVAEVETRLRE--QLSDTKRRLNE---ARREQAKAVVSLRQiqhkATQEKERNQELRRLQDEARKEE 752
Cdd:PRK04863 585 RQQLE----QLQARIQRLAARAPAwlAAQDALARLREqsgEEFEDSQDVTEYMQ----QLLERERELTVERDELAARKQA 656
|
....*....
gi 755556638 753 GQRLTRRVQ 761
Cdd:PRK04863 657 LDEEIERLS 665
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
593-776 |
2.96e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 54.25 E-value: 2.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 593 EQLREERNRLD-AELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQ---ELQRAQESLASVGQQLEAARRGQ----- 663
Cdd:COG3206 182 EQLPELRKELEeAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEaraELAEAEARLAALRAQLGSGPDALpellq 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 664 ----QESTEEAASLRQELTQQQEIYG------QALQEKVAEVETRLREQLsdtKRRLNEARREQAKAVVSLRQIQHKATQ 733
Cdd:COG3206 262 spviQQLRAQLAELEAELAELSARYTpnhpdvIALRAQIAALRAQLQQEA---QRILASLEAELEALQAREASLQAQLAQ 338
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 755556638 734 EKERNQELRRLQDEARkeegqRLTRRVQELERDKNLMLATLKQ 776
Cdd:COG3206 339 LEARLAELPELEAELR-----RLEREVEVARELYESLLQRLEE 376
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
591-768 |
4.67e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 4.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 591 ELEQLREERNRLdAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQ----LEQELQRAQESLASVGQQLEAARRGQQES 666
Cdd:COG4913 243 ALEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRrlelLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 667 TEEAASLRQELTQ---------QQEIygQALQEKVAEVETRlREQLSDTKRRLNEARREQAKAVVSLR-QIQHKATQEKE 736
Cdd:COG4913 322 REELDELEAQIRGnggdrleqlEREI--ERLERELEERERR-RARLEALLAALGLPLPASAEEFAALRaEAAALLEALEE 398
|
170 180 190
....*....|....*....|....*....|..
gi 755556638 737 RNQELRRLQDEARKEEgQRLTRRVQELERDKN 768
Cdd:COG4913 399 ELEALEEALAEAEAAL-RDLRRELRELEAEIA 429
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
160-767 |
5.84e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 5.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 160 RSLELGFSSALSQQAELISRQLQ---ELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGA 236
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDaeeRLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEV 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 237 EM-----------VRKNLEEAKHkELEEIQSLHQEQLSSLTQAHQKALDsLASKAEGLEKSLNSLETKRAGEAKQLAMAQ 305
Cdd:TIGR02169 377 DKefaetrdelkdYREKLEKLKR-EINELKRELDRLQEELQRLSEELAD-LNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 306 KEADMLRNQLSKTQEELEAQVT----LVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATV-ELLQVR 380
Cdd:TIGR02169 455 WKLEQLAADLSKYEQELYDLKEeydrVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVaQLGSVG 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 381 VQsltHMLALqEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQS 460
Cdd:TIGR02169 535 ER---YATAI-EVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDP 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 461 QEQAILQRALQDKtaqVEVERMSTKSLQM------------------------ELDQAQEARRRQEQQIASAEEQLKFVV 516
Cdd:TIGR02169 611 KYEPAFKYVFGDT---LVVEDIEAARRLMgkyrmvtlegelfeksgamtggsrAPRGGILFSRSEPAELQRLRERLEGLK 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 517 GAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVA-LAQLRVESSPPSEAAPPLDT---DLSVEL 592
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKErLEELEEDLSSLEQEIENVKSelkELEARI 767
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 593 EQLREERNRLDAEL-----QLSAHLIQQEVGRAREQGEvERRRLIEVAQQLEQELQRAQESLasvgQQLEAARRGQQEST 667
Cdd:TIGR02169 768 EELEEDLHKLEEALndleaRLSHSRIPEIQAELSKLEE-EVSRIEARLREIEQKLNRLTLEK----EYLEKEIQELQEQR 842
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 668 EEAASLRQELTQQQEIyGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQhKATQEKERNQELRRLQDE 747
Cdd:TIGR02169 843 IDLKEQIKSIEKEIEN-LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE-RKIEELEAQIEKKRKRLS 920
|
650 660
....*....|....*....|
gi 755556638 748 ARKEEGQRLTRRVQELERDK 767
Cdd:TIGR02169 921 ELKAKLEALEEELSEIEDPK 940
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
501-766 |
7.20e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 7.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 501 QEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMArkvalaqlrvessppsea 580
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA------------------ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 581 appldtDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIeVAQQLEQELQRAQESLASVGQQLEAAR 660
Cdd:COG4942 80 ------ALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALL-LSPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 661 RGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvetrlreqlsdtKRRLNEARREQAKAVVSLRQiqhkatQEKERNQE 740
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEE------------RAALEALKAERQKLLARLEK------ELAELAAE 214
|
250 260
....*....|....*....|....*.
gi 755556638 741 LRRLQDEArkeegQRLTRRVQELERD 766
Cdd:COG4942 215 LAELQQEA-----EELEALIARLEAE 235
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
170-777 |
1.19e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 170 LSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHK 249
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 250 ELEEIQSlhQEQLSSLTQAHQKAlDSLASKAEglekslnslETKRAGEAKQLAMAQKEADMLRNqlsKTQEELEAqvtlv 329
Cdd:PTZ00121 1400 AEEDKKK--ADELKKAAAAKKKA-DEAKKKAE---------EKKKADEAKKKAEEAKKADEAKK---KAEEAKKA----- 1459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 330 ESLRKyvgeqvlpefpsqewELERKELLDTLKHLKEDradlqatvellqvrvqslthmlALQEEELTRKIQpldplepEF 409
Cdd:PTZ00121 1460 EEAKK---------------KAEEAKKADEAKKKAEE----------------------AKKADEAKKKAE-------EA 1495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 410 PKKCRSLLRNWREKVfalmvqlKAQDLQhrdstsqlriqvaelqeqvTSQSQEQAILQRALQDKTAQVEVERMSTKSLQM 489
Cdd:PTZ00121 1496 KKKADEAKKAAEAKK-------KADEAK-------------------KAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 490 ELDQAQEARRRQEQQiaSAEEQlkfvvgamnstqaklqstmtrmdqavaripslsnrlsyavRKVHTIKGLMARKVALAQ 569
Cdd:PTZ00121 1550 ELKKAEELKKAEEKK--KAEEA----------------------------------------KKAEEDKNMALRKAEEAK 1587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 570 lRVESSPPSEAAPPLDTDLSVELEQLR-EERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQES 648
Cdd:PTZ00121 1588 -KAEEARIEEVMKLYEEEKKMKAEEAKkAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 649 lasvgqqleaaRRGQQESTEEAASLRQEltqQQEIYGQALQEKVAEVETRLREQLSdtKRRLNEARR-EQAKAVVSLRQI 727
Cdd:PTZ00121 1667 -----------AKKAEEDKKKAEEAKKA---EEDEKKAAEALKKEAEEAKKAEELK--KKEAEEKKKaEELKKAEEENKI 1730
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 755556638 728 qhKATQEKERNQELRRLQDEARKEEGQRltRRVQELERDKNLMLATLKQE 777
Cdd:PTZ00121 1731 --KAEEAKKEAEEDKKKAEEAKKDEEEK--KKIAHLKKEEEKKAEEIRKE 1776
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
181-763 |
1.29e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 181 LQELRRLEEEVRSLREtSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKH-----KELEEIQ 255
Cdd:TIGR00618 235 LQQTQQSHAYLTQKRE-AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAvtqieQQAQRIH 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 256 SLHQEQLSSLTQAHQKALDSLASKAEGLE--KSLNSL-----ETKRAGEAKQLAMAQKE-ADMLRNQLSKTQEELEAQVT 327
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEqrRLLQTLhsqeiHIRDAHEVATSIREISCqQHTLTQHIHTLQQQKTTLTQ 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 328 LVESLRKYVgEQVLPEFPSQEWEL-ERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLE 406
Cdd:TIGR00618 394 KLQSLCKEL-DILQREQATIDTRTsAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 407 PEFPKKCRSLLRNWREKVFALMVQLKAQDLQH--RDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERmst 484
Cdd:TIGR00618 473 QQLQTKEQIHLQETRKKAVVLARLLELQEEPCplCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYH--- 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 485 kslqmELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARK 564
Cdd:TIGR00618 550 -----QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 565 VALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRldaELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQR 644
Cdd:TIGR00618 625 QDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR---EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQ 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 645 AQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLRE--------------------QLS 704
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKArteahfnnneevtaalqtgaELS 781
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 755556638 705 DTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQEL 763
Cdd:TIGR00618 782 HLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEK 840
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
351-679 |
2.48e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 2.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 351 LERKELLDTLKHLKE-DRADLQATVELLQVRVQSLTHMLALQEeeltrKIQPLDPLEPEFPKKCR--SLLRNWRE-KVFA 426
Cdd:TIGR02169 153 VERRKIIDEIAGVAEfDRKKEKALEELEEVEENIERLDLIIDE-----KRQQLERLRREREKAERyqALLKEKREyEGYE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 427 LMVQLKAqdlqhrdstsqLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVE--VERMSTKSLQMELDQAQEARRRQEQ- 503
Cdd:TIGR02169 228 LLKEKEA-----------LERQKEAIERQLASLEEELEKLTEEISELEKRLEeiEQLLEELNKKIKDLGEEEQLRVKEKi 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 504 -----QIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRL-SYAVRKVHTIKGLMARKVALAQLRVESSPP 577
Cdd:TIGR02169 297 geleaEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIeEERKRRDKLTEEYAELKEELEDLRAELEEV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 578 SEAAPPLDTDLS---VELEQLREERNRLDAE---LQLSAHLIQQEVGRAREQGEVERRRLIEVA----------QQLEQE 641
Cdd:TIGR02169 377 DKEFAETRDELKdyrEKLEKLKREINELKREldrLQEELQRLSEELADLNAAIAGIEAKINELEeekedkaleiKKQEWK 456
|
330 340 350
....*....|....*....|....*....|....*...
gi 755556638 642 LQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQ 679
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
169-751 |
2.67e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 169 ALSQQAELISRQLQELRRLEEEVRSLREtslqQKMRLE----------TQAVELDALAVAEKAGQAEAEGLRTALAGAEM 238
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDARE----QIELLEpirelaeryaAARERLAELEYLRAALRLWFAQRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 239 VRKNLE----EAKHKELEEIQSLHQEQLSSLTQAHQKA----LDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADM 310
Cdd:COG4913 298 EELRAElarlEAELERLEARLDALREELDELEAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 311 LRNQLSKTQEELEAQVTLVESLRKYVGEQVlpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLAl 390
Cdd:COG4913 378 SAEEFAALRAEAAALLEALEEELEALEEAL------AEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALA- 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 391 qeEELTRKIQPLDPL------EPEFPKkcrsllrnWR---EKV-----FALMV--QLKAQDLQHRDSTS-QLRIQVAELQ 453
Cdd:COG4913 451 --EALGLDEAELPFVgelievRPEEER--------WRgaiERVlggfaLTLLVppEHYAAALRWVNRLHlRGRLVYERVR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 454 EQVTSQSQEQAiLQRALqdktaqveVERMSTKS------LQMELDQAQEARRrqeqqiASAEEQLKFVVGAMNST-QAKL 526
Cdd:COG4913 521 TGLPDPERPRL-DPDSL--------AGKLDFKPhpfrawLEAELGRRFDYVC------VDSPEELRRHPRAITRAgQVKG 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 527 QSTMTRMD--QAVARIPSL--SNRlsyavRKVHTIkglmARKVALAQLRVEssppseaappldtDLSVELEQLREERNRL 602
Cdd:COG4913 586 NGTRHEKDdrRRIRSRYVLgfDNR-----AKLAAL----EAELAELEEELA-------------EAEERLEALEAELDAL 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 603 DAELQLSAHLIQ--------QEVGRAREQGEVERRRLIE---VAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAA 671
Cdd:COG4913 644 QERREALQRLAEyswdeidvASAEREIAELEAELERLDAssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 672 SLRQELTQQQEIYGQALQEKVAEVETRLREQLsdtKRRLNEARREQAKAVVSLRQIQHKATQEKERnQELRRLQDEARKE 751
Cdd:COG4913 724 QAEEELDELQDRLEAAEDLARLELRALLEERF---AAALGDAVERELRENLEERIDALRARLNRAE-EELERAMRAFNRE 799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
575-777 |
3.19e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 575 SPPSEAAPPLDTDLSVELEQLREERNRLDAELQlsahliqqevgrareQGEVERRRLIEVAQQLEQELQRAQESLASVGQ 654
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELA---------------ALKKEEKALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 655 QLEAARRGQQESTEEAASLRQELTQQQEIYGQAL-----QEKVAEVETRLR-EQLSDTKRRL------NEARREQAKAVV 722
Cdd:COG4942 77 ELAALEAELAELEKEIAELRAELEAQKEELAELLralyrLGRQPPLALLLSpEDFLDAVRRLqylkylAPARREQAEELR 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 755556638 723 S-LRQIQHKATQEKERNQELRRLQDEARKEEgqrltRRVQELERDKNLMLATLKQE 777
Cdd:COG4942 157 AdLAELAALRAELEAERAELEALLAELEEER-----AALEALKAERQKLLARLEKE 207
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
561-705 |
4.11e-06 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 50.72 E-value: 4.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 561 MARKVALAQLRVESSPPSEAAPP--LDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEvERRRLIEVAQQL 638
Cdd:PRK11448 111 LAFRLAVWFHRTYGKDWDFKPGPfvPPEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQ-ELVALEGLAAEL 189
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755556638 639 EQELQRAQESLASVgqqleaarrgQQESTEEAASLRQELTQQQEIYGQALQekVAEVETRL--REQLSD 705
Cdd:PRK11448 190 EEKQQELEAQLEQL----------QEKAAETSQERKQKRKEITDQAAKRLE--LSEEETRIliDQQLRK 246
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
187-766 |
6.16e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 6.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 187 LEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAgaeMVRKNLEeakhkeleeiqslHQEQLsslt 266
Cdd:COG3096 290 LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLN---LVQTALR-------------QQEKI---- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 267 QAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTlveslRKYVGEQVLPEFPS 346
Cdd:COG3096 350 ERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQT-----RAIQYQQAVQALEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 347 QEWELERKELldTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEE---------ELTRKIQPLDPLEPEFpKKCRSLL 417
Cdd:COG3096 425 ARALCGLPDL--TPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAarrqfekayELVCKIAGEVERSQAW-QTARELL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 418 RNWREKvfalmvQLKAQDLQhrdstsQLRIQVAELQEQVTSQSQEQAIL----QRALQDKTAQVEVERMSTK------SL 487
Cdd:COG3096 502 RRYRSQ------QALAQRLQ------QLRAQLAELEQRLRQQQNAERLLeefcQRIGQQLDAAEELEELLAEleaqleEL 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 488 QMELDQAQEAR---RRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKG----L 560
Cdd:COG3096 570 EEQAAEAVEQRselRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVerdeL 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 561 MARKVAL-AQLRVESSPPSEAAPPLDT---------------DLSVE--------------------LEQLREERNRLDA 604
Cdd:COG3096 650 AARKQALeSQIERLSQPGGAEDPRLLAlaerlggvllseiydDVTLEdapyfsalygparhaivvpdLSAVKEQLAGLED 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 605 ELQlSAHLIQQEV----GRAREQGEVERRRLIEVAQ-QL------EQEL--QRAQEslasvgQQLEAARRGQQESTEEAA 671
Cdd:COG3096 730 CPE-DLYLIEGDPdsfdDSVFDAEELEDAVVVKLSDrQWrysrfpEVPLfgRAARE------KRLEELRAERDELAEQYA 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 672 SLRQELTQQQEIYgQALQEKVAE-----VETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQD 746
Cdd:COG3096 803 KASFDVQKLQRLH-QAFSQFVGGhlavaFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLP 881
|
650 660
....*....|....*....|
gi 755556638 747 EARKEEGQRLTRRVQELERD 766
Cdd:COG3096 882 QANLLADETLADRLEELREE 901
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
472-765 |
8.58e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 8.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 472 DKTAQV-EVERMSTKSLQMELDQAQEARRRQ--EQQIASAEEQLKFVVGAMNStQAKLQSTMTRMDQAvaripslsnRLS 548
Cdd:PTZ00121 1061 EAKAHVgQDEGLKPSYKDFDFDAKEDNRADEatEEAFGKAEEAKKTETGKAEE-ARKAEEAKKKAEDA---------RKA 1130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 549 YAVRKVHTIKglmarkvalaqlRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVER 628
Cdd:PTZ00121 1131 EEARKAEDAR------------KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAED 1198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 629 RRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKR 708
Cdd:PTZ00121 1199 ARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 755556638 709 RLNEARR-EQAKAVVSLRQiqhkaTQEKERNQELRRLQDEARKEEgqRLTRRVQELER 765
Cdd:PTZ00121 1279 KADELKKaEEKKKADEAKK-----AEEKKKADEAKKKAEEAKKAD--EAKKKAEEAKK 1329
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
179-777 |
8.95e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 8.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 179 RQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLH 258
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 259 QEQLssltQAHQKALDSLASKAEGLEKSLNSLETKRAG--------EAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVE 330
Cdd:pfam02463 320 EKEK----KKAEKELKKEKEEIEELEKELKELEIKREAeeeeeeelEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 331 SLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFP 410
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 411 KK-------CRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMS 483
Cdd:pfam02463 476 ETqlvklqeQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 484 TKSLQMELDQAQEARRRQEQQIASAEEQLKF------------VVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAV 551
Cdd:pfam02463 556 TADEVEERQKLVRALTELPLGARKLRLLIPKlklplksiavleIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELT 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 552 RKVHTIKGLMARKVALAQLRVESSPPSEaappLDTDLSVELEQLREERNRLDAELQLSAHLiqqEVGRAREQGEVERRRL 631
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSE----VKASLSELTKELLEIQELQEKAESELAKE---EILRRQLEIKKKEQRE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 632 IEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLN 711
Cdd:pfam02463 709 KEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKV 788
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755556638 712 EARREQAKAVVsLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDKNLMLATLKQE 777
Cdd:pfam02463 789 EEEKEEKLKAQ-EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
485-689 |
9.12e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 9.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 485 KSLQMELDQAQEARR--RQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVH------T 556
Cdd:COG3206 185 PELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPellqspV 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 557 IKGLMARKVAL-AQLRVESSPPSEAAPpldtdlsvELEQLREERNRLDAElqlsahlIQQEVGRAREQGEVERRRLIEVA 635
Cdd:COG3206 265 IQQLRAQLAELeAELAELSARYTPNHP--------DVIALRAQIAALRAQ-------LQQEAQRILASLEAELEALQARE 329
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 755556638 636 QQLEQELQRAQESLASVGQQLEaarrgqqesteEAASLRQELTQQQEIYGQALQ 689
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELEA-----------ELRRLEREVEVARELYESLLQ 372
|
|
| TolC |
COG1538 |
Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis]; |
420-726 |
9.23e-06 |
|
Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441147 [Multi-domain] Cd Length: 367 Bit Score: 48.88 E-value: 9.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 420 WREKVFALMVQLKAQDLQHRDSTSQLRIQVAE-------LQEQVTSQSQEQAILQRALQDKTAQVEVERMS---TKSLQM 489
Cdd:COG1538 49 RRARIEAAKAQAEAAEADLRAARLDLAAEVAQayfdllaAQEQLALAEENLALAEELLELARARYEAGLASrldVLQAEA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 490 ELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLsnrLSYAVRKVHTIKGLMAR-KVALA 568
Cdd:COG1538 129 QLAQARAQLAQAEAQLAQARNALALLLGLPPPAPLDLPDPLPPLPPLPPSLPGL---PSEALERRPDLRAAEAQlEAAEA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 569 QLRVESsppSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLievaqQLEQELQRAQES 648
Cdd:COG1538 206 EIGVAR---AAFLPSLSLSASYGYSSSDDLFSGGSDTWSVGLSLSLPLFDGGRNRARVRAAKA-----QLEQAEAQYEQT 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 649 LASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRL-----REQLSDTKRRLNEARREQAKAVVS 723
Cdd:COG1538 278 VLQALQEVEDALAALRAAREQLEALEEALEAAEEALELARARYRAGLASLLdvldaQRELLQAQLNLIQARYDYLLALVQ 357
|
...
gi 755556638 724 LRQ 726
Cdd:COG1538 358 LYR 360
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
244-780 |
9.87e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 9.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 244 EEAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEaDMLRNQLSKTQEELE 323
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQK-REAQEEQLKKQQLLK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 324 AQVTLVESLRKYVGEQVLPEfPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRK--IQP 401
Cdd:TIGR00618 264 QLRARIEELRAQEAVLEETQ-ERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQssIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 402 LDPLEPEFPKKCrSLLRNWREKVFALMVQL-KAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQailqraLQDKTAQVEVE 480
Cdd:TIGR00618 343 QRRLLQTLHSQE-IHIRDAHEVATSIREIScQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDI------LQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 481 RMSTKSLQMEL----DQAQEARRRQEQQIASAEEQLKFVVgAMNSTQAKLQSTMTRMDQAVARIPSLSNRlsyaVRKVHT 556
Cdd:TIGR00618 416 TSAFRDLQGQLahakKQQELQQRYAELCAAAITCTAQCEK-LEKIHLQESAQSLKEREQQLQTKEQIHLQ----ETRKKA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 557 IKGLMARKVALAQLRVESSPPSEAAPPLDTDLS----VELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEvERRRLI 632
Cdd:TIGR00618 491 VVLARLLELQEEPCPLCGSCIHPNPARQDIDNPgpltRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKE-QMQEIQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 633 EVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEiygqALQEKVAEVETRLREQlsdtkrrlnE 712
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR----KLQPEQDLQDVRLHLQ---------Q 636
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755556638 713 ARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARK-EEGQRLTRRVQELERDKNLMLATLKQEGLL 780
Cdd:TIGR00618 637 CSQELALKLTALHALQLTLTQERVREHALSIRVLPKELlASRQLALQKMQSEKEQLTYWKEMLAQCQTL 705
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
587-755 |
1.05e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 587 DLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQES 666
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 667 TEEAASLRQELT------QQQEIYGQALQEKVAEVETR---LREQLSDTKRRLNEARREQAKAVVSLRQIQHKatqEKER 737
Cdd:TIGR02169 328 EAEIDKLLAEIEelereiEEERKRRDKLTEEYAELKEEledLRAELEEVDKEFAETRDELKDYREKLEKLKRE---INEL 404
|
170
....*....|....*...
gi 755556638 738 NQELRRLQDEARKEEGQR 755
Cdd:TIGR02169 405 KRELDRLQEELQRLSEEL 422
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
171-769 |
1.49e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 171 SQQAELISRQLQELRRLEEEVR-SLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALagaEMVRKNLEEAK-- 247
Cdd:pfam15921 84 SHQVKDLQRRLNESNELHEKQKfYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQL---QNTVHELEAAKcl 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 248 HKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSlnslETKRAGEakQLAMAQKEADMLRNQLSKTQEELEAQVT 327
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEA----SGKKIYE--HDSMSTMHFRSLGSAISKILRELDTEIS 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 328 lveslrkYVGEQVLPEfpsqewelerKELLDTLKHLKEDRADLqatveLLQVRVQSLTHMLALQEEELTrkiqpldplep 407
Cdd:pfam15921 235 -------YLKGRIFPV----------EDQLEALKSESQNKIEL-----LLQQHQDRIEQLISEHEVEIT----------- 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 408 EFPKKCRSLlrnwREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSl 487
Cdd:pfam15921 282 GLTEKASSA----RSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANS- 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 488 qmELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVAR-------IPSLSNRLSYAVRKVHTIKGL 560
Cdd:pfam15921 357 --ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEAL 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 561 -----------MARKVALAQLRVESSppsEAAPPLDTDLSVELEQLREERNRLDAE---LQLSAHLIQ------QEVGRA 620
Cdd:pfam15921 435 lkamksecqgqMERQMAAIQGKNESL---EKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSERTVSdltaslQEKERA 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 621 REQGEVERRRL---IEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQ------ALQEK 691
Cdd:pfam15921 512 IEATNAEITKLrsrVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagAMQVE 591
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755556638 692 VAEVEtrlrEQLSDTKRRLNEARREQAKAVVSLRQIQHKATqekerNQELRRLQDEARKEEGQRLTRRVQElERDKNL 769
Cdd:pfam15921 592 KAQLE----KEINDRRLELQEFKILKDKKDAKIRELEARVS-----DLELEKVKLVNAGSERLRAVKDIKQ-ERDQLL 659
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
616-772 |
1.56e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 616 EVGRAREQGEVERRRLIEVAQQLEQELQRAQESL-ASVGQQLEAARRGQQESTEEAASlRQELTQQQEIYGQALQEKVAE 694
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEARkAEDARKAEEARKAEDAKRVEIAR-KAEDARKAEEARKAEDAKKAE 1179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 695 -----VETRLREQL--SDTKRRLNEARR--EQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELER 765
Cdd:PTZ00121 1180 aarkaEEVRKAEELrkAEDARKAEAARKaeEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
|
....*..
gi 755556638 766 DKNLMLA 772
Cdd:PTZ00121 1260 ARMAHFA 1266
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
588-766 |
2.07e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.51 E-value: 2.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 588 LSVELEQ--LREERNRLDAELQLSAHLIQQEVGRAREQgeverrrLIEVAQQLEQELQRAQE---SLASVGQQLEAARRG 662
Cdd:PRK10929 80 LSAELRQqlNNERDEPRSVPPNMSTDALEQEILQVSSQ-------LLEKSRQAQQEQDRAREisdSLSQLPQQQTEARRQ 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 663 QQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLRE----QLSDTKrrlneaRREQAKAVVSLRQIQHkaTQEKERN 738
Cdd:PRK10929 153 LNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDElelaQLSANN------RQELARLRSELAKKRS--QQLDAYL 224
|
170 180
....*....|....*....|....*...
gi 755556638 739 QELRRLQDEARKEEGQRLTRRVQELERD 766
Cdd:PRK10929 225 QALRNQLNSQRQREAERALESTELLAEQ 252
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
263-513 |
2.71e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 263 SSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKyvgeqvlp 342
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK-------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 343 efpsQEWELERKelldtlkhLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDplepefpkkcrsLLRNWRE 422
Cdd:COG4942 91 ----EIAELRAE--------LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ------------YLKYLAP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 423 KVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQE 502
Cdd:COG4942 147 ARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250
....*....|.
gi 755556638 503 QQIASAEEQLK 513
Cdd:COG4942 227 ALIARLEAEAA 237
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
153-770 |
4.32e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 153 QGLGRRGRSLELGFSSALSQQAELISRQLQELRRLEEEVRSLRETSLQ----QKMRLETQAVELDALAvaEKAGQAEAEG 228
Cdd:pfam12128 261 SHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGelsaADAAVAKDRSELEALE--DQHGAFLDAD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 229 LRTALAGAEM---VRKNLEEakhkeLEEIQSLHQEQLSSLTQAHQ----KALDSLASKAEGLEKSL-NSLETKRAGEAKQ 300
Cdd:pfam12128 339 IETAAADQEQlpsWQSELEN-----LEERLKALTGKHQDVTAKYNrrrsKIKEQNNRDIAGIKDKLaKIREARDRQLAVA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 301 LAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRAD-----LQATVE 375
Cdd:pfam12128 414 EDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAanaevERLQSE 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 376 LLQVRVQSLTHMLALQEEE--LTRKIQPLDPLEPEFPKKCRSLLRNWREKVfalmvQLKAQDLQHRDSTSQLRIQVAELQ 453
Cdd:pfam12128 494 LRQARKRRDQASEALRQASrrLEERQSALDELELQLFPQAGTLLHFLRKEA-----PDWEQSIGKVISPELLHRTDLDPE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 454 EQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRM 533
Cdd:pfam12128 569 VWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTAL 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 534 DQAVARIPSLSNRLSyavrkvhtikglmARKVALAQLRVEssppseaappldtdlsvELEQLREERNRLDAELQLSAHLI 613
Cdd:pfam12128 649 KNARLDLRRLFDEKQ-------------SEKDKKNKALAE-----------------RKDSANERLNSLEAQLKQLDKKH 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 614 QQEVGRAREQGEVERRRLIEVAQQLEQELQRAqesLASVGQQLEAARrgqqesteeaASLRQELTQQQEIYGQALQEKVA 693
Cdd:pfam12128 699 QAWLEEQKEQKREARTEKQAYWQVVEGALDAQ---LALLKAAIAARR----------SGAKAELKALETWYKRDLASLGV 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 694 EVET--RLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERD-KNLM 770
Cdd:pfam12128 766 DPDViaKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRrAKLE 845
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
157-398 |
4.34e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 157 RRGRSLELGFSSALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGA 236
Cdd:COG4942 2 RKLLLLALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 237 EMVRKNLE---EAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKS------LNSLETKRAGEAKQLAMAQKE 307
Cdd:COG4942 82 EAELAELEkeiAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlqyLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 308 ADMLRNQLSKTQEELEAQVTLVESLRkyvgeqvlpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHM 387
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEER-------------AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|.
gi 755556638 388 LALQEEELTRK 398
Cdd:COG4942 229 IARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
351-765 |
4.91e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 4.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 351 LERKELLDTLKHLKEDRADL---QATVELLQVRVQSLTHMLALQEE--ELTRKIQPLDplepefpkKCRSLLRNWREkvf 425
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLeraHEALEDAREQIELLEPIRELAERyaAARERLAELE--------YLRAALRLWFA--- 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 426 almvQLKAQDLQHRdsTSQLRIQVAELQEQVTSQSQEQAILQ---RALQDKTAQVEVERMstKSLQMELDQAQEARRRQE 502
Cdd:COG4913 287 ----QRRLELLEAE--LEELRAELARLEAELERLEARLDALReelDELEAQIRGNGGDRL--EQLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 503 QQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKvhtikglmaRKVALAQLRVESsppseaap 582
Cdd:COG4913 359 RRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAE---------AEAALRDLRREL-------- 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 583 pldTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRARE------------------QGEVER-----RRLIEVAQQLE 639
Cdd:COG4913 422 ---RELEAEIASLERRKSNIPARLLALRDALAEALGLDEAelpfvgelievrpeeerwRGAIERvlggfALTLLVPPEHY 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 640 QELQRAQESLAS----VGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLR----EQLSDTKRRL- 710
Cdd:COG4913 499 AAALRWVNRLHLrgrlVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRFDYVCvdspEELRRHPRAIt 578
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755556638 711 -------NEARRE--QAKAVVS--------LRQIQHKATQEKERNQELRRLQDEARK--EEGQRLTRRVQELER 765
Cdd:COG4913 579 ragqvkgNGTRHEkdDRRRIRSryvlgfdnRAKLAALEAELAELEEELAEAEERLEAleAELDALQERREALQR 652
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
350-666 |
6.34e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 6.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 350 ELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMV 429
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 430 QLkaqdlqhrdstSQLRIQVAELQEQvtsqsqeqailQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAE 509
Cdd:TIGR02169 302 EI-----------ASLERSIAEKERE-----------LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 510 EQLKFVvgaMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSppseaappldTDLS 589
Cdd:TIGR02169 360 AELKEE---LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL----------ADLN 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 590 VELEQLREERNRLDAELQLSAHLIQQEVGRA------REQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQ 663
Cdd:TIGR02169 427 AAIAGIEAKINELEEEKEDKALEIKKQEWKLeqlaadLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
...
gi 755556638 664 QES 666
Cdd:TIGR02169 507 RGG 509
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
225-541 |
6.71e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 6.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 225 EAEGLRTALAGAEmVRKNLEEAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGL---------EKSLNSLETK-- 293
Cdd:PRK04863 287 EALELRRELYTSR-RQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALrqqekieryQADLEELEERle 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 294 -----RAGEAKQLAM-------AQKEADMLRNQLSKTQEELEAQVTL-------VESLRKYVGEQVLPEFpsqewelerk 354
Cdd:PRK04863 366 eqnevVEEADEQQEEnearaeaAEEEVDELKSQLADYQQALDVQQTRaiqyqqaVQALERAKQLCGLPDL---------- 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 355 elldTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEE---------ELTRKIqpLDPLEPEFPKKC-RSLLRNWREkv 424
Cdd:PRK04863 436 ----TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAahsqfeqayQLVRKI--AGEVSRSEAWDVaRELLRRLRE-- 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 425 falmvqLKAQDlqhrDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVErmstkslqmelDQAQEARRRQEQQ 504
Cdd:PRK04863 508 ------QRHLA----EQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDE-----------DELEQLQEELEAR 566
|
330 340 350
....*....|....*....|....*....|....*..
gi 755556638 505 IASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIP 541
Cdd:PRK04863 567 LESLSESVSEARERRMALRQQLEQLQARIQRLAARAP 603
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
181-712 |
8.92e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 8.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 181 LQELRRLEEEVRSLRETslqqkmrLETQAVELDALAVAEKAGQAEAEGLRTALAGAeMVRKNLEEAKHKELEEIQSLHQE 260
Cdd:PRK02224 250 REELETLEAEIEDLRET-------IAETEREREELAEEVRDLRERLEELEEERDDL-LAEAGLDDADAEAVEARREELED 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 261 QLSSLTQA---HQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVG 337
Cdd:PRK02224 322 RDEELRDRleeCRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 338 EQvlpefPSQEWELE--RKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLAlqEEELTRKIQPLDplepEFPKKCRs 415
Cdd:PRK02224 402 DA-----PVDLGNAEdfLEELREERDELREREAELEATLRTARERVEEAEALLE--AGKCPECGQPVE----GSPHVET- 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 416 lLRNWREKVFALMVQLKAQDLQHRDSTSQLR--IQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQ---ME 490
Cdd:PRK02224 470 -IEEDRERVEELEAELEDLEEEVEEVEERLEraEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELReraAE 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 491 LDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQavaripsLSNRLSYAVRKVHTIKGLMARKVALAQL 570
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-------IRTLLAAIADAEDEIERLREKREALAEL 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 571 RVESSppseaappldtdlsvelEQLREERNRLDaelQLSAHLIQQEVGRAREqgevERRRLIEVAQQLEQELQRAQESLA 650
Cdd:PRK02224 622 NDERR-----------------ERLAEKRERKR---ELEAEFDEARIEEARE----DKERAEEYLEQVEEKLDELREERD 677
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755556638 651 SvgqqLEAARRGQQESTEEAASLRQELTQQQE-------IYGQA--LQEKVAEVETRLREQLSDT-KRRLNE 712
Cdd:PRK02224 678 D----LQAEIGAVENELEELEELRERREALENrvealeaLYDEAeeLESMYGDLRAELRQRNVETlERMLNE 745
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
622-777 |
9.67e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 9.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 622 EQGEV---------ERRRLIEVA----------QQLEQELQRAQESLASV-------GQQLEAARRgQQESTEEAASLRQ 675
Cdd:COG1196 142 GQGMIdriieakpeERRAIIEEAagiskykerkEEAERKLEATEENLERLedilgelERQLEPLER-QAEKAERYRELKE 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 676 ELTQ-QQEIYGQALQEkvaevetrLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEgQ 754
Cdd:COG1196 221 ELKElEAELLLLKLRE--------LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-Y 291
|
170 180
....*....|....*....|...
gi 755556638 755 RLTRRVQELERDKNLMLATLKQE 777
Cdd:COG1196 292 ELLAELARLEQDIARLEERRREL 314
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
173-776 |
1.03e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.97 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 173 QAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDA--------LAVAEKAGQA-----EAEGLRTALAGAEMV 239
Cdd:pfam10174 114 TEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGArdesikklLEMLQSKGLPkksgeEDWERTRRIAEAEMQ 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 240 RKNLE---EAKHKEL----EEIQSLHQ-EQLSSLTQAHQKALDSLASKAEGLEKSLNSLE--------------TKRAGE 297
Cdd:pfam10174 194 LGHLEvllDQKEKENihlrEELHRRNQlQPDPAKTKALQTVIEMKDTKISSLERNIRDLEdevqmlktngllhtEDREEE 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 298 AKQLAMAQKEADMLRNQ-------LSKTQEELEAQVTLVESLRKYVGEQvlpefpsqewelerKELLDTLKH---LKEDR 367
Cdd:pfam10174 274 IKQMEVYKSHSKFMKNKidqlkqeLSKKESELLALQTKLETLTNQNSDC--------------KQHIEVLKEsltAKEQR 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 368 AD-LQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFpKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQL- 445
Cdd:pfam10174 340 AAiLQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEI-RDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLa 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 446 --RIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERmstkslqmelDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQ 523
Cdd:pfam10174 419 glKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLK----------EQREREDRERLEELESLKKENKDLKEKVSALQ 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 524 AKLQSTMTRMDQAVARIPSLSnrlSYAVRKVHTIKglmarkvalaQLRVESSPPSEAAPPLDTDLSVELEQlrEERNRLD 603
Cdd:pfam10174 489 PELTEKESSLIDLKEHASSLA---SSGLKKDSKLK----------SLEIAVEQKKEECSKLENQLKKAHNA--EEAVRTN 553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 604 AELQLSAHLIQQEVGRARE-----QGEVErrRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELT 678
Cdd:pfam10174 554 PEINDRIRLLEQEVARYKEesgkaQAEVE--RLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMK 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 679 QQQ-EIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATqekERNQELRRLQDEARKEEGQRLT 757
Cdd:pfam10174 632 KKGaQLLEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLA---EKDGHLTNLRAERRKQLEEILE 708
|
650 660
....*....|....*....|....
gi 755556638 758 RRVQEL-----ERDKNLMLATLKQ 776
Cdd:pfam10174 709 MKQEALlaaisEKDANIALLELSS 732
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
434-752 |
1.29e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 434 QDLQHRDSTSQLRIQVAELQEQVTSQSQ--EQAILQRALQDKTAQV--EVERMSTKSlQMELDQ-AQEARRRQEQQIAsa 508
Cdd:pfam17380 290 QEKFEKMEQERLRQEKEEKAREVERRRKleEAEKARQAEMDRQAAIyaEQERMAMER-ERELERiRQEERKRELERIR-- 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 509 EEQLKFVVGAMNSTQaKLQSTMTRMDQAVARipSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSEaappldtdl 588
Cdd:pfam17380 367 QEEIAMEISRMRELE-RLQMERQQKNERVRQ--ELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ--------- 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 589 sVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTE 668
Cdd:pfam17380 435 -REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEER 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 669 EAASLRQELTQQQEIYGQALQEKVAEVETRlreqlsdTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEA 748
Cdd:pfam17380 514 KRKLLEKEMEERQKAIYEEERRREAEEERR-------KQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEK 586
|
....
gi 755556638 749 RKEE 752
Cdd:pfam17380 587 ARAE 590
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
169-550 |
4.35e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 4.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 169 ALSQQAELISRQLQELRRLEEEVRSLRE--TSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEA 246
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAelEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 247 KH------KELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLET-----KRAGEAKQLAMAQKEADMLRNQL 315
Cdd:COG4717 162 EEeleeleAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEeleeaQEELEELEEELEQLENELEAAAL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 316 SKTQEELEAQVTLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEEL 395
Cdd:COG4717 242 EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEEL 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 396 TRKIQPLDPLEPEFPKKCRSLLRNWREKVFALmvqLKAQDLQHRDSTSQLRIQVAELQEQVTSQSqEQAILQRALQDKTA 475
Cdd:COG4717 322 EELLAALGLPPDLSPEELLELLDRIEELQELL---REAEELEEELQLEELEQEIAALLAEAGVED-EEELRAALEQAEEY 397
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755556638 476 QVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYA 550
Cdd:COG4717 398 QELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
630-751 |
4.57e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 630 RLIEVAQQleqELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELtqqqEIYGQALQEKVAEVETRLREQLSDTKRR 709
Cdd:PRK00409 502 NIIEEAKK---LIGEDKEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQEEEDKLLEEAEKE 574
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 755556638 710 ----LNEARREQAKAVVSLRQIQ-HKATQEKERN-QELRRLQDEARKE 751
Cdd:PRK00409 575 aqqaIKEAKKEADEIIKELRQLQkGGYASVKAHElIEARKRLNKANEK 622
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
167-463 |
7.32e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.50 E-value: 7.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 167 SSALSQQAELISRQLQEL-RRLEEEVRSLRET--SLQQKMRLETQAVEldALAVAEKAGQAEAEGLrTALAGAEMVRKNL 243
Cdd:PRK10929 104 TDALEQEILQVSSQLLEKsRQAQQEQDRAREIsdSLSQLPQQQTEARR--QLNEIERRLQTLGTPN-TPLAQAQLTALQA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 244 EEAKHKELeeIQSLHQEQLSsltqahqkaldslASKAEGLEKSLNSLETKRAGEAKQLAMAqkeadmLRNQL-SKTQEEL 322
Cdd:PRK10929 181 ESAALKAL--VDELELAQLS-------------ANNRQELARLRSELAKKRSQQLDAYLQA------LRNQLnSQRQREA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 323 EAQVTLVESLRKYVGEqvLPEFPSQEWELERkELLDTLKHlKEDRADL------QATVELLQVRvQSLThmlALQE---- 392
Cdd:PRK10929 240 ERALESTELLAEQSGD--LPKSIVAQFKINR-ELSQALNQ-QAQRMDLiasqqrQAASQTLQVR-QALN---TLREqsqw 311
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755556638 393 --------EELTRKIQPLdplePEFPKKcRSLLRNwrekvfalMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQ 463
Cdd:PRK10929 312 lgvsnalgEALRAQVARL----PEMPKP-QQLDTE--------MAQLRVQRLRYEDLLNKQPQLRQIRQADGQPLTAEQ 377
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
583-703 |
7.86e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 42.44 E-value: 7.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 583 PLDTDLSVELEQLREERNRLDAELQLSAHLIQQevgrareqgevERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRG 662
Cdd:pfam09787 40 DSSTALTLELEELRQERDLLREEIQKLRGQIQQ-----------LRTELQELEAQQQEEAESSREQLQELEEQLATERSA 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 755556638 663 QQESTEEAASLRQE-------LTQQQEIYGQALQEKVAEVEtRLREQL 703
Cdd:pfam09787 109 RREAEAELERLQEElryleeeLRRSKATLQSRIKDREAEIE-KLRNQL 155
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
592-760 |
7.90e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 7.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 592 LEQLREERNRLDAELQLSAhliQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAA 671
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEA---KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELE 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 672 SLRQELTQQQEIYgqalQEKVAEVETRLrEQLSdtkrRLNearREQAKAVVsLRQIQHKAtqEKERNQELRRLQDEArKE 751
Cdd:PRK12704 121 QKQQELEKKEEEL----EELIEEQLQEL-ERIS----GLT---AEEAKEIL-LEKVEEEA--RHEAAVLIKEIEEEA-KE 184
|
....*....
gi 755556638 752 EGQRLTRRV 760
Cdd:PRK12704 185 EADKKAKEI 193
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
429-762 |
8.61e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 8.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 429 VQLKAQDLQHRDSTSQLRIQVAELQEQVtsqSQEQAILQRA--LQDKTAQVEVErmstkSLQMELDQAQEARR---RQEQ 503
Cdd:COG3096 846 SELERELAQHRAQEQQLRQQLDQLKEQL---QLLNKLLPQAnlLADETLADRLE-----ELREELDAAQEAQAfiqQHGK 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 504 QIASAEEQLkfvvgamnstqAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQlrvessppSEAAPP 583
Cdd:COG3096 918 ALAQLEPLV-----------AVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSY--------EDAVGL 978
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 584 L--DTDLSvelEQLREernRLdaelqlsahliqqevgrarEQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARR 661
Cdd:COG3096 979 LgeNSDLN---EKLRA---RL-------------------EQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQ 1033
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 662 GQQEsteeaasLRQELtQQQEIYGQALQEKVAEVE-TRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQE 740
Cdd:COG3096 1034 TLQE-------LEQEL-EELGVQADAEAEERARIRrDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQ 1105
|
330 340
....*....|....*....|..
gi 755556638 741 LRRlQDEARKEEGQRLTRRVQE 762
Cdd:COG3096 1106 ERE-QVVQAKAGWCAVLRLARD 1126
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
343-767 |
8.98e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 8.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 343 EFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKCRSLLRNwRE 422
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLEL-EE 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 423 KVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQD---KTAQVEVERMSTKSLQMELDQAQEARR 499
Cdd:pfam02463 224 EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKEnkeEEKEKKLQEEELKLLAKEEEELKSELL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 500 RQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAvARIPSLSNRLSYAVRkvHTIKGLMARKVALAQLRVESSPPSE 579
Cdd:pfam02463 304 KLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEEL-EKELKELEIKREAEE--EEEEELEKLQEKLEQLEEELLAKKK 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 580 AAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEvaQQLEQELQRAQESLASVGQQLEAA 659
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEE--EEESIELKQGKLTEEKEELEKQEL 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 660 RRGQQESTEEAASLRQELTQQqeiygQALQEKVAEVETRLREQLSDTKRRLNEARreqaKAVVSLRQIQHKATQEKERNQ 739
Cdd:pfam02463 459 KLLKDELELKKSEDLLKETQL-----VKLQEQLELLLSRQKLEERSQKESKARSG----LKVLLALIKDGVGGRIISAHG 529
|
410 420
....*....|....*....|....*...
gi 755556638 740 ELRRLQDEARKEEGQRLTRRVQELERDK 767
Cdd:pfam02463 530 RLGDLGVAVENYKVAISTAVIVEVSATA 557
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
580-763 |
1.05e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 580 AAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGE--------------VERRRLIEVAQQLEQELQRA 645
Cdd:PRK04863 827 LAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEglsalnrllprlnlLADETLADRVEEIREQLDEA 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 646 QESLASVGQ------QLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLR----------EQLSDT--- 706
Cdd:PRK04863 907 EEAKRFVQQhgnalaQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRrahfsyedaaEMLAKNsdl 986
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755556638 707 ----KRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDeARKEEGQRLTRRVQEL 763
Cdd:PRK04863 987 neklRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYD-AKRQMLQELKQELQDL 1046
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
566-723 |
1.07e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 566 ALAQLRVE-SSPPSEaappLDtDLSVELEQLREERNRLDAElqlsahliqqevgraREQGEVERrrlievAQQLEQELQR 644
Cdd:COG0542 398 AAARVRMEiDSKPEE----LD-ELERRLEQLEIEKEALKKE---------------QDEASFER------LAELRDELAE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 645 AQESLAsvgqQLEAARRGQQESTEEAASLRQELTQQqeiYGQ--ALQEKVAEVETRLREQLSDTKRRLNEarrEQAKAVV 722
Cdd:COG0542 452 LEEELE----ALKARWEAEKELIEEIQELKEELEQR---YGKipELEKELAELEEELAELAPLLREEVTE---EDIAEVV 521
|
.
gi 755556638 723 S 723
Cdd:COG0542 522 S 522
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
588-731 |
1.35e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 41.64 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 588 LSVELEQLREERNRLDAELQLsahliQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAAR------- 660
Cdd:pfam00529 63 AEAQLAKAQAQVARLQAELDR-----LQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRvlapigg 137
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755556638 661 -RGQQESTEEA------ASLRQELTQQQEIYGQALQEkVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKA 731
Cdd:pfam00529 138 iSRESLVTAGAlvaqaqANLLATVAQLDQIYVQITQS-AAENQAEVRSELSGAQLQIAEAEAELKLAKLDLERTEIRA 214
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
580-726 |
1.46e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.62 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 580 AAPPLDTDLSVELeqLRE--ERNR-LDAELQLSAHLiqQEVGRAREQGEVERRRLIEVAQ---QLEQELQRAQESLASVG 653
Cdd:PHA03247 842 APPPLATSPQAIL--LREllQRGQdLEAPADLAAWL--ASLGDAAGQGLVERKELDELARaihKINERQVRRSSGLAELE 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 654 --QQLEAARRGQQES-------------------TEEAASLRQE-LTQQQEIYGQALQEKVA-EVETRLREQLSDTKRRL 710
Cdd:PHA03247 918 rfEALDAALRQELESeaafvpapgaapyadagglSPETRRLAEDaLRQAKAMAAAKLTDELSpEARERLRARARAIEAML 997
|
170
....*....|....*.
gi 755556638 711 NEArREQAKAVVSLRQ 726
Cdd:PHA03247 998 EEA-RERAEAARAARE 1012
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
241-763 |
1.48e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 241 KNLEEAKHKELEEIQSLH------QEQLSSLtQAHQKALDSLASKAEGLEKSLNSLEtkraGEAKQLAMAQKEADMLRNQ 314
Cdd:PRK03918 196 KEKEKELEEVLREINEISselpelREELEKL-EKEVKELEELKEEIEELEKELESLE----GSKRKLEEKIRELEERIEE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 315 LSKTQEELEAQVTLVESLRKYVGEQVlpefpsqEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHM------L 388
Cdd:PRK03918 271 LKKEIEELEEKVKELKELKEKAEEYI-------KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKeerleeL 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 389 ALQEEELTRKIQPLDPLEPEFpKKCRSLLRNWR-----------EKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVT 457
Cdd:PRK03918 344 KKKLKELEKRLEELEERHELY-EEAKAKKEELErlkkrltgltpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIK 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 458 SQSQEQAILQRALQD-KTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKlQSTMTRMDQA 536
Cdd:PRK03918 423 ELKKAIEELKKAKGKcPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK-ESELIKLKEL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 537 VARIPSLSNRLS--------YAVRKVHTIKGLmARKVALAQLRVESSppSEAAPPLDTDLSV---ELEQLREERNRLDAE 605
Cdd:PRK03918 502 AEQLKELEEKLKkynleeleKKAEEYEKLKEK-LIKLKGEIKSLKKE--LEKLEELKKKLAElekKLDELEEELAELLKE 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 606 LQLSAHLIQQEVGRAREQGEVERRRLIEvAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYG 685
Cdd:PRK03918 579 LEELGFESVEELEERLKELEPFYNEYLE-LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 686 QALQEKVAEVETRLREQLSDTKRRL--NEARREQAKAvvSLRQIQHKATQEKERNQELRRLqdEARKEEGQRLTRRVQEL 763
Cdd:PRK03918 658 EEEYEELREEYLELSRELAGLRAELeeLEKRREEIKK--TLEKLKEELEEREKAKKELEKL--EKALERVEELREKVKKY 733
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
438-765 |
1.74e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 438 HRDSTSQLRIQVAELQEQVTSQSQEQAILQRalqdktaqvevermstkslqmELDQAQEARRRQEQQIASAEEQLKFVVG 517
Cdd:COG3096 283 LSERALELRRELFGARRQLAEEQYRLVEMAR---------------------ELEELSARESDLEQDYQAASDHLNLVQT 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 518 AMnstqaKLQSTMTRMDQAVAripSLSNRLSyavrkvhtikglmarkvalaqlrvessppseaappldtdlsvELEQLRE 597
Cdd:COG3096 342 AL-----RQQEKIERYQEDLE---ELTERLE------------------------------------------EQEEVVE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 598 ERNRLDAELQLSAHLIQQEVGRAREQG-------EVERRRLIEVaQQLEQELQRAQE-------SLASVGQQLEAARRGQ 663
Cdd:COG3096 372 EAAEQLAEAEARLEAAEEEVDSLKSQLadyqqalDVQQTRAIQY-QQAVQALEKARAlcglpdlTPENAEDYLAAFRAKE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 664 QESTEEAASLRQEL-------TQQQEIYgQALQEKVAEVEtrlREQLSDTKRRLNEARREQ---AKAVVSLRQIQHKATQ 733
Cdd:COG3096 451 QQATEEVLELEQKLsvadaarRQFEKAY-ELVCKIAGEVE---RSQAWQTARELLRRYRSQqalAQRLQQLRAQLAELEQ 526
|
330 340 350
....*....|....*....|....*....|..
gi 755556638 734 EKERNQELRRLQDEARKEEGQRLTRRvQELER 765
Cdd:COG3096 527 RLRQQQNAERLLEEFCQRIGQQLDAA-EELEE 557
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
612-764 |
2.21e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 40.58 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 612 LIQQEVGRAREQ-GEVER--RRLIEVAQQLEQELQRAQESLASVGQQLEAA-RRGQQESTEEAASLRQELTQQQEIYGQA 687
Cdd:COG1842 27 MLDQAIRDMEEDlVEARQalAQVIANQKRLERQLEELEAEAEKWEEKARLAlEKGREDLAREALERKAELEAQAEALEAQ 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755556638 688 LQEkVAEVETRLREQLSDTKRRLNEARREQAKAVVslrqiQHKATQEKER-NQELRRLQDEARKEEGQRLTRRVQELE 764
Cdd:COG1842 107 LAQ-LEEQVEKLKEALRQLESKLEELKAKKDTLKA-----RAKAAKAQEKvNEALSGIDSDDATSALERMEEKIEEME 178
|
|
| tape_meas_lam_C |
TIGR01541 |
phage tail tape measure protein, lambda family; This model represents a relatively ... |
598-719 |
2.41e-03 |
|
phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273681 [Multi-domain] Cd Length: 332 Bit Score: 40.98 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 598 ERNRLDAELQLSAHLIQQEVgrareQGEVERRRLIEVAQQLEQELQRAQESLasvGQQLEAARRG--QQESTEEAASLRQ 675
Cdd:TIGR01541 22 DEKSLQSRSDEIIALIKLEK-----LLEEAEQKALEALKKLAEATASIRAQN---KRQLDRFGLGdkQRERLDARLQIDR 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 755556638 676 ELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAK 719
Cdd:TIGR01541 94 TFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKASLNEALAELHA 137
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
163-365 |
3.10e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 41.17 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 163 ELGFSSALSQQaELISRQLQEL-RRLEEEVRSLRETSLQQKMRLETQAVELD--------------ALAVAEKAGQAEAE 227
Cdd:pfam05667 228 SQGLASRLTPE-EYRKRKRTKLlKRIAEQLRSAALAGTEATSGASRSAQDLAellssfsgssttdtGLTKGSRFTHTEKL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 228 GLRTALAGAEMV----RKNLEEAKHKELEEIQSLHQ--EQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQL 301
Cdd:pfam05667 307 QFTNEAPAATSSpptkVETEEELQQQREEELEELQEqlEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQY 386
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755556638 302 AMAQKEADML---RNQLSKTQEELEAQVTLVESLrkyvgeqvlpefpSQEWELERKELLDTLKHLKE 365
Cdd:pfam05667 387 KVKKKTLDLLpdaEENIAKLQALVDASAQRLVEL-------------AGQWEKHRVPLIEEYRALKE 440
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
373-776 |
3.38e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 373 TVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMVQLKAQDlqhrDSTSQLRIQVAEL 452
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAAD----AAVAKDRSELEAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 453 QEQVTSQSQEQAILQRALQDKTAQV--EVERMStKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTM 530
Cdd:pfam12128 328 EDQHGAFLDADIETAAADQEQLPSWqsELENLE-ERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREAR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 531 TRMDQAV-----ARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESsppSEAAPPLDTDLS---VELEQLREERNRL 602
Cdd:pfam12128 407 DRQLAVAeddlqALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQ---ATATPELLLQLEnfdERIERAREEQEAA 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 603 DAElQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEE------------- 669
Cdd:pfam12128 484 NAE-VERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQsigkvispellhr 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 670 --------AASLRQELT--------QQQEI-----YGQALQEKVAEVET----------RLREQLSDTKRRLNEARREQA 718
Cdd:pfam12128 563 tdldpevwDGSVGGELNlygvkldlKRIDVpewaaSEEELRERLDKAEEalqsarekqaAAEEQLVQANGELEKASREET 642
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 755556638 719 KAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDKNLMLATLKQ 776
Cdd:pfam12128 643 FARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQA 700
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
157-776 |
3.46e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 157 RRGRSLELGFSSALSQQAELIsRQLQELRRLEEEvrSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGA 236
Cdd:TIGR00606 461 KELQQLEGSSDRILELDQELR-KAERELSKAEKN--SLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQM 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 237 EMVRKNlEEAKHKELEEIQSLHQEQLSSLtqahqkaLDSLASKAEgLEKSLNSLETKRAGEAKQLAMAQKE---ADMLRN 313
Cdd:TIGR00606 538 EMLTKD-KMDKDEQIRKIKSRHSDELTSL-------LGYFPNKKQ-LEDWLHSKSKEINQTRDRLAKLNKElasLEQNKN 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 314 QLSKTQEELEAQVTLVEslrkyvgEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEE 393
Cdd:TIGR00606 609 HINNELESKEEQLSSYE-------DKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCP 681
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 394 ELTRKIQPLDPLEpEFPKKCRSLLRNWREKVFALMVQLKAQDLQH---------RDSTSQLRI-QVAELQEQVTSQSQEQ 463
Cdd:TIGR00606 682 VCQRVFQTEAELQ-EFISDLQSKLRLAPDKLKSTESELKKKEKRRdemlglapgRQSIIDLKEkEIPELRNKLQKVNRDI 760
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 464 AILQRALQDKTAQVEV---ERMSTKSLQME---LDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQA--KLQSTMTRMDQ 535
Cdd:TIGR00606 761 QRLKNDIEEQETLLGTimpEEESAKVCLTDvtiMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVnqEKQEKQHELDT 840
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 536 AVARIPSLSNRLSYAVRKVHTIKG----LMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRlDAELQLSAH 611
Cdd:TIGR00606 841 VVSKIELNRKLIQDQQEQIQHLKSktneLKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ-DSPLETFLE 919
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 612 LIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTE-EAASLRQELTQQQEiygqaLQE 690
Cdd:TIGR00606 920 KDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKEtELNTVNAQLEECEK-----HQE 994
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 691 KVAEvETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDKNLM 770
Cdd:TIGR00606 995 KINE-DMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLA 1073
|
....*.
gi 755556638 771 LATLKQ 776
Cdd:TIGR00606 1074 LGRQKG 1079
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
634-765 |
3.69e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 634 VAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvetrLREQLSDTKRRLNEA 713
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE----KDERIERLERELSEA 453
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 755556638 714 RREQAKAVVSLRQIQHKatqeKERNQELRRLQDEARkEEGQRLTRRVQELER 765
Cdd:COG2433 454 RSEERREIRKDREISRL----DREIERLERELEEER-ERIEELKRKLERLKE 500
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
157-326 |
3.76e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 157 RRGRSLElgfssALSQQAELISRQLQELRRLEEEVRSLRE--TSLQQKMRLE-TQAVELDALAVAEKAGQAEA-EGLRTA 232
Cdd:COG3096 502 RRYRSQQ-----ALAQRLQQLRAQLAELEQRLRQQQNAERllEEFCQRIGQQlDAAEELEELLAELEAQLEELeEQAAEA 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 233 LAGAEMVRKNLEEAKHKeleeiqslhQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAmAQKEADMLR 312
Cdd:COG3096 577 VEQRSELRQQLEQLRAR---------IKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLE-REREATVER 646
|
170
....*....|....
gi 755556638 313 NQLSKTQEELEAQV 326
Cdd:COG3096 647 DELAARKQALESQI 660
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
168-510 |
4.14e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 168 SALSQQAELISRQLQELRRLEEEVRSLREtslqqkmRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEE-- 245
Cdd:PRK02224 370 SELEEAREAVEDRREEIEELEEEIEELRE-------RFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARErv 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 246 AKHKELEEI-------QSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLEtKRAGEAKQLAMAQKEADMLRNQLSKT 318
Cdd:PRK02224 443 EEAEALLEAgkcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVE-ERLERAEDLVEAEDRIERLEERREDL 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 319 QE-------ELEAQVTLVESLRKYVG----EQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQvRVQSLTHM 387
Cdd:PRK02224 522 EEliaerreTIEEKRERAEELRERAAeleaEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAA 600
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 388 LALQEEELTRKIQPLDPLEpEFPKKCRSLLRNWREKVFALMVQLKAQDLQhrdSTSQLRIQVAELQEQVTSQSQEQAILQ 467
Cdd:PRK02224 601 IADAEDEIERLREKREALA-ELNDERRERLAEKRERKRELEAEFDEARIE---EAREDKERAEEYLEQVEEKLDELREER 676
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 755556638 468 RALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEE 510
Cdd:PRK02224 677 DDLQAEIGAVENELEELEELRERREALENRVEALEALYDEAEE 719
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
627-718 |
4.19e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 627 ERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQ-------------QQEIYGQAlQEKVA 693
Cdd:PRK04863 280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAasdhlnlvqtalrQQEKIERY-QADLE 358
|
90 100 110
....*....|....*....|....*....|
gi 755556638 694 EVETRLREQLS-----DTKRRLNEARREQA 718
Cdd:PRK04863 359 ELEERLEEQNEvveeaDEQQEENEARAEAA 388
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
583-761 |
4.60e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 583 PLDTDLSVELEQLREERNRLDAELQLSAHLI---QQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASV-GQQLEA 658
Cdd:pfam07888 27 PRAELLQNRLEECLQERAELLQAQEAANRQRekeKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELeEKYKEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 659 ARRGQQESTEEAASLRQELTQQQEIY-----GQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAvvslRQIQHKATQ 733
Cdd:pfam07888 107 SASSEELSEEKDALLAQRAAHEARIReleedIKTLTQRVLERETELERMKERAKKAGAQRKEEEAER----KQLQAKLQQ 182
|
170 180
....*....|....*....|....*...
gi 755556638 734 EKERNQELRRLQDEARKEEGQRLTRRVQ 761
Cdd:pfam07888 183 TEEELRSLSKEFQELRNSLAQRDTQVLQ 210
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
430-653 |
4.67e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 4.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 430 QLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAE 509
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 510 EQLKFVVGAM--NSTQAKLQSTMTRMD-QAVARIPSLSNRLSYAVRKvhTIKGLMARKVALAQLRVESSPPSEAAPPLDT 586
Cdd:COG4942 104 EELAELLRALyrLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARRE--QAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 587 DLSVE---LEQLREERNRLDAELQLSAHLIQQEVGRAREQgeveRRRLIEVAQQLEQELQRAQESLASVG 653
Cdd:COG4942 182 ELEEEraaLEALKAERQKLLARLEKELAELAAELAELQQE----AEELEALIARLEAEAAAAAERTPAAG 247
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
172-502 |
4.68e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 172 QQAELISRQLQELRRLEEEvRSLRETSLQQKmrletqaveldaLAVAEKAGQAEAEglRTALAGAEMVRKNLEeaKHKEL 251
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKE-EKAREVERRRK------------LEEAEKARQAEMD--RQAAIYAEQERMAME--REREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 252 EEIQslHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEadmlrnqlsKTQEEleaqvtlvES 331
Cdd:pfam17380 351 ERIR--QEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKV---------KILEE--------ER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 332 LRKYVGEQVLPEFPSQEWELERKElldTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKiqpldPLEPEFPK 411
Cdd:pfam17380 412 QRKIQQQKVEMEQIRAEQEEARQR---EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRK-----KLELEKEK 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 412 KCRSLLRNWREKVfaLMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQailQRALQDKTAQVEVERMSTKSLQMEL 491
Cdd:pfam17380 484 RDRKRAEEQRRKI--LEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEE---RRREAEEERRKQQEMEERRRIQEQM 558
|
330
....*....|.
gi 755556638 492 DQAQEARRRQE 502
Cdd:pfam17380 559 RKATEERSRLE 569
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
168-510 |
5.31e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 168 SALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAvAEKAG--------QAEAEGLRTALAGAEMV 239
Cdd:TIGR04523 328 NQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK-KENQSykqeiknlESQINDLESKIQNQEKL 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 240 RKNLEEAKHKELEEIQSLHQEQ--LSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSK 317
Cdd:TIGR04523 407 NQQKDEQIKKLQQEKELLEKEIerLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 318 TQEELEAQVTLVESLRKyvgeqvlpefpsqewelERKELLDTLKHLKEDRADLQATVELLqvrvqslthmlalqEEELTR 397
Cdd:TIGR04523 487 KQKELKSKEKELKKLNE-----------------EKKELEEKVKDLTKKISSLKEKIEKL--------------ESEKKE 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 398 KIQPLDPLEPEFPKKCRSLLRNWREKVfalmVQLKAQDLQ--HRDSTSQLRIQvAELQEQVTSQSQEQAILQRALQDKTA 475
Cdd:TIGR04523 536 KESKISDLEDELNKDDFELKKENLEKE----IDEKNKEIEelKQTQKSLKKKQ-EEKQELIDQKEKEKKDLIKEIEEKEK 610
|
330 340 350
....*....|....*....|....*....|....*
gi 755556638 476 QVEvermstkSLQMELDQAQEARRRQEQQIASAEE 510
Cdd:TIGR04523 611 KIS-------SLEKELEKAKKENEKLSSIIKNIKS 638
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
170-747 |
7.47e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 7.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 170 LSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLE----- 244
Cdd:pfam01576 49 LQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQlekvt 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 245 -EAKHKELEEIQSLHQEQLSSLTQahqkaldslasKAEGLEKSLNSLETKRAGEAKQLAMAQKeadmLRNQLSKTQEELE 323
Cdd:pfam01576 129 tEAKIKKLEEDILLLEDQNSKLSK-----------ERKLLEERISEFTSNLAEEEEKAKSLSK----LKNKHEAMISDLE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 324 AQVTLVESLRkyvgeqvlpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQ----SLTHMLALQEEELTRKI 399
Cdd:pfam01576 194 ERLKKEEKGR-------------QELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAkkeeELQAALARLEEETAQKN 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 400 QPLDPLepefpKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAEL----------QEQVTSQSQEQAILQRA 469
Cdd:pfam01576 261 NALKKI-----RELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELedtldttaaqQELRSKREQEVTELKKA 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 470 LQDKTA--QVEVERMSTK------SLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIP 541
Cdd:pfam01576 336 LEEETRshEAQLQEMRQKhtqaleELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQ 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 542 SLSNRLSYAVRKvhtiKGLMARKVALAQLRVESsppseaappldtdLSVELEQLREERNRLDAEL-QLSAHLiqqevgra 620
Cdd:pfam01576 416 ELQARLSESERQ----RAELAEKLSKLQSELES-------------VSSLLNEAEGKNIKLSKDVsSLESQL-------- 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 621 reqgeverrrliEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQeiygQALQEKVAEVETRLr 700
Cdd:pfam01576 471 ------------QDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQL----STLQAQLSDMKKKL- 533
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 755556638 701 EQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELR-RLQDE 747
Cdd:pfam01576 534 EEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKnRLQQE 581
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
167-490 |
8.04e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 8.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 167 SSALSQQAELISRQLQELRRLEEEVRSLRET--------SLQQKMRLE-TQAVEldALAVAEKAGQAEAEGLRTALAGAE 237
Cdd:PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQladyqqalDVQQTRAIQyQQAVQ--ALERAKQLCGLPDLTADNAEDWLE 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 238 MVRKNLEEAKHK--ELEEIQSLHQEQLSSLTQAHQkALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEAdmLRNQL 315
Cdd:PRK04863 446 EFQAKEQEATEEllSLEQKLSVAQAAHSQFEQAYQ-LVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQ--LRMRL 522
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 316 SKTQEELEAQVTLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVrvqslthmlalQEEEL 395
Cdd:PRK04863 523 SELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQ-----------QLEQL 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 396 TRKIQPLDPLEPEfpkkcrsllrnWrekvfalmvqlkaqdLQHRDSTSQLRIQVAELQEqvTSQSQEQAILQRALQDKTA 475
Cdd:PRK04863 592 QARIQRLAARAPA-----------W---------------LAAQDALARLREQSGEEFE--DSQDVTEYMQQLLEREREL 643
|
330
....*....|....*
gi 755556638 476 QVEVERMSTKSLQME 490
Cdd:PRK04863 644 TVERDELAARKQALD 658
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
178-713 |
9.29e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.82 E-value: 9.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 178 SRQLQELRRLEEEVRSLRETSLQQKmrletqAVELDALAVAEKAGQAEAE-GLRTALAGAEMVRKNLEEAKHK----ELE 252
Cdd:pfam12128 386 EQNNRDIAGIKDKLAKIREARDRQL------AVAEDDLQALESELREQLEaGKLEFNEEEYRLKSRLGELKLRlnqaTAT 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 253 EIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQV-TLVES 331
Cdd:pfam12128 460 PELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAgTLLHF 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 332 LRKYVG--EQVLPEFPSQEwELERKELLDTLKhlkEDRADLQATVELLQVRVQSLTHMLALQ-EEELTRKIQPLDplepE 408
Cdd:pfam12128 540 LRKEAPdwEQSIGKVISPE-LLHRTDLDPEVW---DGSVGGELNLYGVKLDLKRIDVPEWAAsEEELRERLDKAE----E 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 409 FPKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMS----T 484
Cdd:pfam12128 612 ALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSleaqL 691
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 485 KSLQMELDQAQEARRRQEQQIASAEEQ-LKFVVGAMNSTQAklqstmtRMDQAVARipslsnrlSYAVRKVHTIKGLMAR 563
Cdd:pfam12128 692 KQLDKKHQAWLEEQKEQKREARTEKQAyWQVVEGALDAQLA-------LLKAAIAA--------RRSGAKAELKALETWY 756
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 564 KVALAQLRVEssppseaaPPLDTDLSVELEQL--REERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQ-QLEQ 640
Cdd:pfam12128 757 KRDLASLGVD--------PDVIAKLKREIRTLerKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAIsELQQ 828
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 641 ELQRAQES----LASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVA-EVETRLR--EQLSDTKRRLNEA 713
Cdd:pfam12128 829 QLARLIADtklrRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQgSIGERLAqlEDLKLKRDYLSES 908
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
627-765 |
9.76e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.37 E-value: 9.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 627 ERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELtqqqeiygqALQEKVAEVEtRLREQLSDT 706
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL---------QLLPLYQELE-ALEAELAEL 144
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 755556638 707 KRRLNEARREqakavvsLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELER 765
Cdd:COG4717 145 PERLEELEER-------LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQD 196
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
474-768 |
9.88e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 39.51 E-value: 9.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 474 TAQVEVERMSTKSLQMELDQAQEARrrqeqqiaSAEEQLKFVVGAMNSTQAKLQSTmtrmDQAVARIPSLSNRLSYAVRK 553
Cdd:PRK11281 28 RAASNGDLPTEADVQAQLDALNKQK--------LLEAEDKLVQQDLEQTLALLDKI----DRQKEETEQLKQQLAQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 554 vhtIKGLMARKVALAQLRVESSPPSEAAPPLDtDLSVELEQLREERNRLDAEL-QLSAHLIQQEVGRAREQGEverrrlI 632
Cdd:PRK11281 96 ---LRQAQAELEALKDDNDEETRETLSTLSLR-QLESRLAQTLDQLQNAQNDLaEYNSQLVSLQTQPERAQAA------L 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556638 633 EVAQQLEQELQRAQESLASVGQQLEAARRGQQEsTEEAASLRQELTQQQEIYG--------QALQEKVAEVETRLREQLS 704
Cdd:PRK11281 166 YANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQ-AEQALLNAQNDLQRKSLEGntqlqdllQKQRDYLTARIQRLEHQLQ 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755556638 705 DTKRRLNEARREQAKAVVSLRQIQHKAT---------QEKERNQEL-RRLQdearkEEGQRLTRRVQELERDKN 768
Cdd:PRK11281 245 LLQEAINSKRLTLSEKTVQEAQSQDEAAriqanplvaQELEINLQLsQRLL-----KATEKLNTLTQQNLRVKN 313
|
|
| |
