|
Name |
Accession |
Description |
Interval |
E-value |
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
27-772 |
0e+00 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 1062.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 27 MAPTWASDVPLVQSPASQDVLERRLDAQRSTVTTWGQDFCGDGQGLGRRGRSLELGFSSALSQQAELISRQLQELRRLEE 106
Cdd:pfam07111 1 MAPTWASDIPLVQSPGHQDVLERRLDTQRPTVTMWEQDVSGDGQGPGRRGRSLELEGSQALSQQAELISRQLQELRRLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 107 EVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQEQLSSLTQAH 186
Cdd:pfam07111 81 EVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 187 QKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQVLPEFPSQEW 266
Cdd:pfam07111 161 EEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTW 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 267 ELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMV 346
Cdd:pfam07111 241 ELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 347 QLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAE 426
Cdd:pfam07111 321 QLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 427 EQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSEAAPPLDTDLS 506
Cdd:pfam07111 401 EQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 507 VELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEE 586
Cdd:pfam07111 481 LELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEE 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 587 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEAR 666
Cdd:pfam07111 561 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEAR 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 667 KEEGQRLTRRVQELERDKNLMLATLKQEGLLFCYKQQRLLAVLPSGVNKKCSPRS---VESSSSESPAAASCKESVKGSL 743
Cdd:pfam07111 641 KEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLDKKSVVSSprpECSASAPIPAAVPTRESIKGSL 720
|
730 740
....*....|....*....|....*....
gi 755556650 744 TVLLDNLQGLSEAISRDEDICVEDNQNTK 772
Cdd:pfam07111 721 TVLLDNLQGLSEAISREEAVCQEDNQDTC 749
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
99-683 |
2.98e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.00 E-value: 2.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 99 QELRRLEEEVRSLRETSLQQkmRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQE- 177
Cdd:COG1196 220 EELKELEAELLLLKLRELEA--ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEl 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 178 -QLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQ 256
Cdd:COG1196 298 aRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 257 VlpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQpldplepefpkkcrslLRN 336
Cdd:COG1196 378 E------EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE----------------LEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 337 WREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVErmstksLQMELDQAQEARR 416
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL------LEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 417 RQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSE 496
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 497 AAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEvaqQLEQELQRAQESLASVGQQLEAA 576
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA---GRLREVTLEGEGGSAGGSLTGGS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 577 RRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQ 656
Cdd:COG1196 667 RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
570 580
....*....|....*....|....*....
gi 755556650 657 ELRRLQDEARKEEGQR--LTRRVQELERD 683
Cdd:COG1196 747 LLEEEALEELPEPPDLeeLERELERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
94-696 |
2.37e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 84.04 E-value: 2.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 94 ISRQLQELRRLEE-----EVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKE- 167
Cdd:PTZ00121 1168 EARKAEDAKKAEAarkaeEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEe 1247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 168 ---------LEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKS---LNSLETKRAGEAKQLAMAQKEADMLRNQLSKT 235
Cdd:PTZ00121 1248 ernneeirkFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 236 QEELEAQVTLVESLRKyVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRK 315
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKK-AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 316 IQPLDPLEPEfPKKCRSLLRNWREKVFALMVQLKAQDLQHRDstsqlriqvaELQEQVTSQSQEQAILQRALQDKTAQVE 395
Cdd:PTZ00121 1407 ADELKKAAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKAD----------EAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 396 VERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVAripSLSNRLSYAVRKVHTIK 475
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK---ADEAKKAEEKKKADELK 1552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 476 GLMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEV---------ERR 546
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIkaeelkkaeEEK 1632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 547 RLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETR-----LREQLS 621
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaeeLKKKEA 1712
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755556650 622 DTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRlqDEARKEEGQRLTRRVQELERDKNLMLATLKQEGL 696
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK--DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
85-629 |
3.06e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 3.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 85 SALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAK 164
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 165 HKELEEIQSLHQEQlssltQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVT 244
Cdd:COG1196 382 EELAEELLEALRAA-----AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 245 LVESLRKyvgeqvlpefpsqewelERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEP 324
Cdd:COG1196 457 EEEALLE-----------------LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 325 EFPKKCRSLLRNWREKVFALMVQLKAqdlqhrdstsqlriqvAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSL 404
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALA----------------AALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 405 QMELDQAQEARRRQEQQIASAEEQLkfvvgamnstqaklqstmtrmDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVAL 484
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDL---------------------READARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 485 AQLRVESsppSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQE 564
Cdd:COG1196 643 AGRLREV---TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755556650 565 slasvgQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNE 629
Cdd:COG1196 720 ------ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
356-710 |
8.59e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 8.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 356 RDSTSQLRIQVAELQEQVtsqsqEQAILQRALQDKTAQVEVErmstkSLQMELDQAQEARRRQEQQIASAEEQLKFVVGA 435
Cdd:COG1196 192 EDILGELERQLEPLERQA-----EKAERYRELKEELKELEAE-----LLLLKLRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 436 MNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQlrvessppseaappldtDLSVELEQLREE 515
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR-----------------ELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 516 RNRLDAELQLsahlIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELT 595
Cdd:COG1196 325 LAELEEELEE----LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 596 QQQEIYGQA-----LQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEG 670
Cdd:COG1196 401 QLEELEEAEealleRLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 755556650 671 QRLTRRVQELERDKNLMLATLKQEGLLFCYKQQRLLAVLP 710
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
96-686 |
8.78e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.40 E-value: 8.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 96 RQLQELRRlEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAE----------AEGLRTA--LAGAEMVRKNLEEA 163
Cdd:PTZ00121 1128 RKAEEARK-AEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEdakkaeaarkAEEVRKAeeLRKAEDARKAEAAR 1206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 164 KHKELEEIQSLHQEQLSSLTQAHQKALDSL--ASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEA 241
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKAEAVKKAEEAKkdAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA 1286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 242 -QVTLVESLRKYVGEQVLPEFPSQEWELERKElldtlkHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKiqpLD 320
Cdd:PTZ00121 1287 eEKKKADEAKKAEEKKKADEAKKKAEEAKKAD------EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA---AD 1357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 321 PLEPEFPKKCRSLLRNWREKVFALMVQLKAQDLQHRDstsQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMS 400
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD---EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD 1434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 401 tkslqmELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTikglmAR 480
Cdd:PTZ00121 1435 ------EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE-----AK 1503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 481 KVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRldAELQLSAhliqQEVGRAREQGEVERRRLIEVAQQLEQELQ 560
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK--AEEKKKA----DELKKAEELKKAEEKKKAEEAKKAEEDKN 1577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 561 RAQESlASVGQQLEAARRGQ--QESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQL----SDTKRRLNEARREQ 634
Cdd:PTZ00121 1578 MALRK-AEEAKKAEEARIEEvmKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLkkkeAEEKKKAEELKKAE 1656
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 755556650 635 AKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQrLTRRVQELERDKNL 686
Cdd:PTZ00121 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA-LKKEAEEAKKAEEL 1707
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
87-684 |
3.03e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 3.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 87 LSQQAElisrQLQELRRLEEEVRSLRETSLqqKMRLETQAVELDALAVAEKAGQAEAEGLRTALAgaemvrknleeAKHK 166
Cdd:TIGR02168 205 LERQAE----KAERYKELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAELQ-----------ELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 167 ELEEIQSLHQEqLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLV 246
Cdd:TIGR02168 268 KLEELRLEVSE-LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 247 ESLRKYVGEQV--LPEFPSQEWELERK--ELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPL 322
Cdd:TIGR02168 347 EELKEELESLEaeLEELEAELEELESRleELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 323 EPEFPKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQ---RALQDKTAQVEVERM 399
Cdd:TIGR02168 427 LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarlDSLERLQENLEGFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 400 STKSLQMELDQAQEARRRQEQQIASAE-----------EQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAV 468
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVLSELISVDEgyeaaieaalgGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 469 RKVHTIKGLMARKVALAQLRVESSPPsEAAPPLD---------TDLSVELEQLREERNR-----LDAELqLSAHLIQQEV 534
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKDLVKFDP-KLRKALSyllggvlvvDDLDNALELAKKLRPGyrivtLDGDL-VRPGGVITGG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 535 GRAREQGEVERRRLIEvaqQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQ-QQEIYGQALQEKVAEVE 613
Cdd:TIGR02168 665 SAKTNSSILERRREIE---ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEElSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 614 ---------------TRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKE------EGQR 672
Cdd:TIGR02168 742 veqleeriaqlskelTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllneEAAN 821
|
650
....*....|..
gi 755556650 673 LTRRVQELERDK 684
Cdd:TIGR02168 822 LRERLESLERRI 833
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
86-685 |
2.64e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 2.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 86 ALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKH 165
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 166 KELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTL 245
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 246 VESLRKY--------------------VGEQVLPEfpsQEWELERKELL----------------DTLKHLKEDRADLQA 289
Cdd:TIGR02168 498 QENLEGFsegvkallknqsglsgilgvLSELISVD---EGYEAAIEAALggrlqavvvenlnaakKAIAFLKQNELGRVT 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 290 TVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEpEFPKKCRSLLRNWREKVF---------ALMVQLKAQ--------D 352
Cdd:TIGR02168 575 FLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLV-KFDPKLRKALSYLLGGVLvvddldnalELAKKLRPGyrivtldgD 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 353 LQHRD------------STSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEvermstkSLQMELDQAQEARRRQEQ 420
Cdd:TIGR02168 654 LVRPGgvitggsaktnsSILERRREIEELEEKIEELEEKIAELEKALAELRKELE-------ELEEELEQLRKELEELSR 726
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 421 QIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKglmaRKVALAQLRVEssppseaapp 500
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE----AEIEELEAQIE---------- 792
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 501 ldtDLSVELEQLREERNRLDAELQLSAHLIQQeVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQ 580
Cdd:TIGR02168 793 ---QLKEELKALREALDELRAELTLLNEEAAN-LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 581 QESTEEAASLRQELTQQQEIYGQA------LQEKVAEVETR---LREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQE 651
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLrseleeLSEELRELESKrseLRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
650 660 670
....*....|....*....|....*....|....
gi 755556650 652 KERNQELRRLQDEARKEEGQRLTRRVQELERDKN 685
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
31-451 |
5.34e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 5.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 31 WASDVPLVQSPASQDVLERRLDAQRSTVTTwgqdfcgDGQGLGRRGRSL---ELGFSSALSQQaelisrqlQELRRLEEE 107
Cdd:TIGR02168 621 LLGGVLVVDDLDNALELAKKLRPGYRIVTL-------DGDLVRPGGVITggsAKTNSSILERR--------REIEELEEK 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 108 VRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQEQLSSLTQahq 187
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE--- 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 188 kaLDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAqvTLVESLRKYVGEQVLpEFPSQEWE 267
Cdd:TIGR02168 763 --IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL--LNEEAANLRERLESL-ERRIAATE 837
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 268 LERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKcRSLLRNWREKVFALMVQ 347
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL-SEELRELESKRSELRRE 916
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 348 LKAQDLQHRDST---SQLRIQVAELQEQVTSQSQ--EQAILQRALQDKTAQVEVERmSTKSLQMELDQAQEARRRQEQQI 422
Cdd:TIGR02168 917 LEELREKLAQLElrlEGLEVRIDNLQERLSEEYSltLEEAEALENKIEDDEEEARR-RLKRLENKIKELGPVNLAAIEEY 995
|
410 420 430
....*....|....*....|....*....|..
gi 755556650 423 ASAEEQLKFVVGAM---NSTQAKLQSTMTRMD 451
Cdd:TIGR02168 996 EELKERYDFLTAQKedlTEAKETLEEAIEEID 1027
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
222-629 |
1.13e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 222 QKEADMLRNQLSKTQEELEAQVTLVESLRKYVgeqvlpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSL 301
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKEL----------EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 302 THMLALQEEELTRKIQPLDPLEPEfpkkcRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQA 381
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEER-----LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 382 ILQRALQDKTAQVEvermstkSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLS 461
Cdd:TIGR02168 821 NLRERLESLERRIA-------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 462 NRLSYAVRKVHTIKGLMarkvalaqlrvessppseaappldTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQG 541
Cdd:TIGR02168 894 SELEELSEELRELESKR------------------------SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 542 EVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASL---RQELTQQQEIYGQA---LQEKVAEVETR 615
Cdd:TIGR02168 950 SLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELkerYDFLTAQKEDLTEAketLEEAIEEIDRE 1029
|
410
....*....|....
gi 755556650 616 LREQLSDTKRRLNE 629
Cdd:TIGR02168 1030 ARERFKDTFDQVNE 1043
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
89-689 |
4.72e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.90 E-value: 4.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 89 QQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEglrTALAGAEMVRKNLEEAKHKEL 168
Cdd:TIGR00618 307 QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHE---VATSIREISCQQHTLTQHIHT 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 169 EEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKT-QEELEAQVTLVE 247
Cdd:TIGR00618 384 LQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTaQCEKLEKIHLQE 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 248 SLRKYVgeqvlpefpsqewelERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFP 327
Cdd:TIGR00618 464 SAQSLK---------------EREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTR 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 328 KKCRSLLRNWR-----EKVFALMV-------QLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQdktAQVE 395
Cdd:TIGR00618 529 RMQRGEQTYAQletseEDVYHQLTserkqraSLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTE---KLSE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 396 VERMSTKSLQMELDQAQEA----RRRQEQQIASAEEQLKFvvgamnSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKV 471
Cdd:TIGR00618 606 AEDMLACEQHALLRKLQPEqdlqDVRLHLQQCSQELALKL------TALHALQLTLTQERVREHALSIRVLPKELLASRQ 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 472 HTIKGLMARKVALAQLRVESSPPSEAAPPLDT---DLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRL 548
Cdd:TIGR00618 680 LALQKMQSEKEQLTYWKEMLAQCQTLLRELEThieEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR 759
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 549 IEVAQQLEQE----LQRAQEsLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQAL---QEKVAEVETRLREQLS 621
Cdd:TIGR00618 760 TEAHFNNNEEvtaaLQTGAE-LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILnlqCETLVQEEEQFLSRLE 838
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755556650 622 DTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKE---EGQRLTRRVQELERDKNLMLA 689
Cdd:TIGR00618 839 EKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKiqfDGDALIKFLHEITLYANVRLA 909
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
357-668 |
1.36e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 357 DSTSQLRIQVAELQEQVtsqsqEQAILQRALQD--KTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVG 434
Cdd:TIGR02168 193 DILNELERQLKSLERQA-----EKAERYKELKAelRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 435 AMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMAR-----KVALAQLRVESSPPSEAAPPLdTDLSVEL 509
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANlerqlEELEAQLEELESKLDELAEEL-AELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 510 EQLREERNRLDAELQlSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAAS 589
Cdd:TIGR02168 347 EELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755556650 590 LRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKE 668
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
269-684 |
3.32e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 269 ERKELLDTLKHLKEDRADLQATV-------ELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEfpkkcrsllrnwREKV 341
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIaetererEELAEEVRDLRERLEELEEERDDLLAEAGLDDAD------------AEAV 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 342 FALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQ-RA--LQDKTAQVEVERMSTKSlqmELDQAQEARRRQ 418
Cdd:PRK02224 313 EARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEeRAeeLREEAAELESELEEARE---AVEDRREEIEEL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 419 EQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLM-ARKVALAQLRVESSPPSEA 497
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLeAGKCPECGQPVEGSPHVET 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 498 APPLD---TDLSVELEQLREERNRLDAELQlsahliqqevgRAREQGEVERR--RLIEVAQQLEQELQRAQESLASVGQQ 572
Cdd:PRK02224 470 IEEDRervEELEAELEDLEEEVEEVEERLE-----------RAEDLVEAEDRieRLEERREDLEELIAERRETIEEKRER 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 573 LEAARRGQQESTEEAASLRqELTQQQEIYGQALQEKVAEVETRlREQLSDTKRRLN------EARREQAKAVVSLR-QIQ 645
Cdd:PRK02224 539 AEELRERAAELEAEAEEKR-EAAAEAEEEAEEAREEVAELNSK-LAELKERIESLErirtllAAIADAEDEIERLReKRE 616
|
410 420 430
....*....|....*....|....*....|....*....
gi 755556650 646 HKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDK 684
Cdd:PRK02224 617 ALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDK 655
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
402-637 |
4.01e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 4.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 402 KSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARK 481
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 482 VALAQLRVESSPPSEAAPPldtdlsveleqlrEERNRLDAELQLSAHLIQQEVGRAREQgeverRRLIEVAQQLEQELQR 561
Cdd:COG4942 110 LRALYRLGRQPPLALLLSP-------------EDFLDAVRRLQYLKYLAPARREQAEEL-----RADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755556650 562 AQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvETRLREQLSDTKRRLNEARREQAKA 637
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE-AEELEALIARLEAEAAAAAERTPAA 246
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
87-421 |
4.40e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 4.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 87 LSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAK-- 164
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKae 1567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 165 -HKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGlEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQV 243
Cdd:PTZ00121 1568 eAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE-EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 244 TLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVEllqvrvqslthmlalQEEELTRKIQPLDPLE 323
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK---------------KEAEEAKKAEELKKKE 1711
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 324 PEFPKKCRSLLRNWREKvfalmvQLKAQDLQHRDSTSQLRIQVAELQEQvtsqsQEQAILQRALQDKTAQVEVERMSTKS 403
Cdd:PTZ00121 1712 AEEKKKAEELKKAEEEN------KIKAEEAKKEAEEDKKKAEEAKKDEE-----EKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
330
....*....|....*...
gi 755556650 404 LQMELDQAQEARRRQEQQ 421
Cdd:PTZ00121 1781 IEEELDEEDEKRRMEVDK 1798
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
152-684 |
5.57e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 5.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 152 GAEMVRKNLEEAKHkeleEIQSLhQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQ 231
Cdd:pfam15921 72 GKEHIERVLEEYSH----QVKDL-QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 232 LSKTQEELEAQVTLVESLRKYVGEQVlpefpsqewELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEE 311
Cdd:pfam15921 147 LQNTVHELEAAKCLKEDMLEDSNTQI---------EQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRS 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 312 LTRKIQP-LDPLEPEFpkkcrSLLRNwreKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQailqraLQDK 390
Cdd:pfam15921 218 LGSAISKiLRELDTEI-----SYLKG---RIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVE------ITGL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 391 TAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKfvvgamnSTQAKLQSTMTRMDQavaripslsnrlSYAVRK 470
Cdd:pfam15921 284 TEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE-------STVSQLRSELREAKR------------MYEDKI 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 471 VHTIKGLMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERR---R 547
Cdd:pfam15921 345 EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRElddR 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 548 LIEVaQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQ--LSDTKR 625
Cdd:pfam15921 425 NMEV-QRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtVSDLTA 503
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 755556650 626 RLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDK 684
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDK 562
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
508-685 |
1.92e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 508 ELEQLREERNRLdAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQ----LEQELQRAQESLASVGQQLEAARRGQQES 583
Cdd:COG4913 243 ALEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRrlelLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 584 TEEAASLRQELTQ---------QQEIygQALQEKVAEVETRlREQLSDTKRRLNEARREQAKAVVSLR-QIQHKATQEKE 653
Cdd:COG4913 322 REELDELEAQIRGnggdrleqlEREI--ERLERELEERERR-RARLEALLAALGLPLPASAEEFAALRaEAAALLEALEE 398
|
170 180 190
....*....|....*....|....*....|..
gi 755556650 654 RNQELRRLQDEARKEEgQRLTRRVQELERDKN 685
Cdd:COG4913 399 ELEALEEALAEAEAAL-RDLRRELRELEAEIA 429
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
366-678 |
2.26e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.50 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 366 VAELQEQVTSQ---SQEQAILQRALQDKTAQVEVERMSTKS----LQMELDqAQEARRRQEQQIASAEEQLKFVVGAMNS 438
Cdd:PRK04863 357 LEELEERLEEQnevVEEADEQQEENEARAEAAEEEVDELKSqladYQQALD-VQQTRAIQYQQAVQALERAKQLCGLPDL 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 439 TQAKLQstmTRMDQAVARIPSLSNRLSYAVRKV---HTIKGLMARKVALAQLRVESSPPSEAAppldtDLSVE-LEQLRE 514
Cdd:PRK04863 436 TADNAE---DWLEEFQAKEQEATEELLSLEQKLsvaQAAHSQFEQAYQLVRKIAGEVSRSEAW-----DVARElLRRLRE 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 515 ERNRLDAELQLSAHLIQQEvGRAREQGEVERRrLIEVAQQLEQELQRAQEsLASVGQQLEAARRGQQESTEEAASLRQEL 594
Cdd:PRK04863 508 QRHLAEQLQQLRMRLSELE-QRLRQQQRAERL-LAEFCKRLGKNLDDEDE-LEQLQEELEARLESLSESVSEARERRMAL 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 595 TQQQEiygqALQEKVAEVETRLRE--QLSDTKRRLNE---ARREQAKAVVSLRQiqhkATQEKERNQELRRLQDEARKEE 669
Cdd:PRK04863 585 RQQLE----QLQARIQRLAARAPAwlAAQDALARLREqsgEEFEDSQDVTEYMQ----QLLERERELTVERDELAARKQA 656
|
....*....
gi 755556650 670 GQRLTRRVQ 678
Cdd:PRK04863 657 LDEEIERLS 665
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
269-683 |
3.48e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 269 ERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQE-----EELTRKIQPLDPLEPEFPKKCRSL--LRNWREKV 341
Cdd:COG4717 89 EYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyqelEALEAELAELPERLEELEERLEELreLEEELEEL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 342 FALMVQLKAQ-DLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQ 420
Cdd:COG4717 169 EAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 421 QIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTikglmarkvalaqlrvessPPSEAAPP 500
Cdd:COG4717 249 RLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG-------------------KEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 501 LDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQ-QLEQELQRAQESLASVGQQLEAARRG 579
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEElQLEELEQEIAALLAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 580 QQESTEEAASLRQELTQQQE----IYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKaTQEKERN 655
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEqleeLLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAE-LEQLEED 468
|
410 420
....*....|....*....|....*...
gi 755556650 656 QELRRLQDEArkeegQRLTRRVQELERD 683
Cdd:COG4717 469 GELAELLQEL-----EELKAELRELAEE 491
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
510-693 |
4.79e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 4.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 510 EQLREERNRLD-AELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQ---ELQRAQESLASVGQQLEAARRGQ----- 580
Cdd:COG3206 182 EQLPELRKELEeAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEaraELAEAEARLAALRAQLGSGPDALpellq 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 581 ----QESTEEAASLRQELTQQQEIYG------QALQEKVAEVETRLREQLsdtKRRLNEARREQAKAVVSLRQIQHKATQ 650
Cdd:COG3206 262 spviQQLRAQLAELEAELAELSARYTpnhpdvIALRAQIAALRAQLQQEA---QRILASLEAELEALQAREASLQAQLAQ 338
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 755556650 651 EKERNQELRRLQDEARkeegqRLTRRVQELERDKNLMLATLKQ 693
Cdd:COG3206 339 LEARLAELPELEAELR-----RLEREVEVARELYESLLQRLEE 376
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
478-622 |
6.63e-06 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 49.95 E-value: 6.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 478 MARKVALAQLRVESSPPSEAAPP--LDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEvERRRLIEVAQQL 555
Cdd:PRK11448 111 LAFRLAVWFHRTYGKDWDFKPGPfvPPEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQ-ELVALEGLAAEL 189
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755556650 556 EQELQRAQESLASVgqqleaarrgQQESTEEAASLRQELTQQQEIYGQALQekVAEVETRL--REQLSD 622
Cdd:PRK11448 190 EEKQQELEAQLEQL----------QEKAAETSQERKQKRKEITDQAAKRLE--LSEEETRIliDQQLRK 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
418-683 |
8.90e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 8.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 418 QEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMArkvalaqlrvessppsea 497
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA------------------ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 498 appldtDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIeVAQQLEQELQRAQESLASVGQQLEAAR 577
Cdd:COG4942 80 ------ALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALL-LSPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 578 RGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvetrlreqlsdtKRRLNEARREQAKAVVSLRQiqhkatQEKERNQE 657
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEE------------RAALEALKAERQKLLARLEK------ELAELAAE 214
|
250 260
....*....|....*....|....*.
gi 755556650 658 LRRLQDEArkeegQRLTRRVQELERD 683
Cdd:COG4942 215 LAELQQEA-----EELEALIARLEAE 235
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
395-684 |
1.06e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 395 EVERMSTK--SLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKvh 472
Cdd:TIGR02169 675 ELQRLRERleGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE-- 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 473 tikgLMARKVALAQLRVESSPPSEaappldtdlsvELEQLREERNRLDAELqlsAHLIQQEVGRAREQGEVERRRLIEVA 552
Cdd:TIGR02169 753 ----IENVKSELKELEARIEELEE-----------DLHKLEEALNDLEARL---SHSRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 553 QQLEQELQRAQESLasvgQQLEAARRGQQESTEEAASLRQELTQQQEIyGQALQEKVAEVETRLREQLSDTKRRLNEARR 632
Cdd:TIGR02169 815 REIEQKLNRLTLEK----EYLEKEIQELQEQRIDLKEQIKSIEKEIEN-LNGKKEELEEELEELEAALRDLESRLGDLKK 889
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 755556650 633 EQAKAVVSLRQIQhKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDK 684
Cdd:TIGR02169 890 ERDELEAQLRELE-RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
508-632 |
2.11e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 508 ELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEA 587
Cdd:COG4913 310 ELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 755556650 588 ASLRQELTQQQEIYGQALQEKVAEvETRLREQLSDTKRRLNEARR 632
Cdd:COG4913 390 AALLEALEEELEALEEALAEAEAA-LRDLRRELRELEAEIASLER 433
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
505-683 |
3.10e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 47.74 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 505 LSVELEQ--LREERNRLDAELQLSAHLIQQEVGRAREQgeverrrLIEVAQQLEQELQRAQE---SLASVGQQLEAARRG 579
Cdd:PRK10929 80 LSAELRQqlNNERDEPRSVPPNMSTDALEQEILQVSSQ-------LLEKSRQAQQEQDRAREisdSLSQLPQQQTEARRQ 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 580 QQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLRE----QLSDTKrrlneaRREQAKAVVSLRQIQHkaTQEKERN 655
Cdd:PRK10929 153 LNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDElelaQLSANN------RQELARLRSELAKKRS--QQLDAYL 224
|
170 180
....*....|....*....|....*...
gi 755556650 656 QELRRLQDEARKEEGQRLTRRVQELERD 683
Cdd:PRK10929 225 QALRNQLNSQRQREAERALESTELLAEQ 252
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-694 |
3.66e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 508 ELEQLREERNRLDAELQLSAHLIQQEvgrareqgEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEA 587
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL--------KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 588 ASLRQELTQQQEIYGQAL-----QEKVAEVETRLR-EQLSDTKRRL------NEARREQAKAVVS-LRQIQHKATQEKER 654
Cdd:COG4942 93 AELRAELEAQKEELAELLralyrLGRQPPLALLLSpEDFLDAVRRLqylkylAPARREQAEELRAdLAELAALRAELEAE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 755556650 655 NQELRRLQDEARKEEgqrltRRVQELERDKNLMLATLKQE 694
Cdd:COG4942 173 RAELEALLAELEEER-----AALEALKAERQKLLARLEKE 207
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
268-596 |
4.74e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 4.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 268 LERKELLDTLKHLKE-DRADLQATVELLQVRVQSLTHMLALQEeeltrKIQPLDPLEPEFPKKCR--SLLRNWRE-KVFA 343
Cdd:TIGR02169 153 VERRKIIDEIAGVAEfDRKKEKALEELEEVEENIERLDLIIDE-----KRQQLERLRREREKAERyqALLKEKREyEGYE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 344 LMVQLKAqdlqhrdstsqLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVE--VERMSTKSLQMELDQAQEARRRQEQ- 420
Cdd:TIGR02169 228 LLKEKEA-----------LERQKEAIERQLASLEEELEKLTEEISELEKRLEeiEQLLEELNKKIKDLGEEEQLRVKEKi 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 421 -----QIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRL-SYAVRKVHTIKGLMARKVALAQLRVESSPP 494
Cdd:TIGR02169 297 geleaEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIeEERKRRDKLTEEYAELKEELEDLRAELEEV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 495 SEAAPPLDTDLS---VELEQLREERNRLDAE---LQLSAHLIQQEVGRAREQGEVERRRLIEVA----------QQLEQE 558
Cdd:TIGR02169 377 DKEFAETRDELKdyrEKLEKLKREINELKREldrLQEELQRLSEELADLNAAIAGIEAKINELEeekedkaleiKKQEWK 456
|
330 340 350
....*....|....*....|....*....|....*...
gi 755556650 559 LQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQ 596
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
504-672 |
5.39e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 5.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 504 DLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQES 583
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 584 TEEAASLRQELT------QQQEIYGQALQEKVAEVETR---LREQLSDTKRRLNEARREQAKAVVSLRQIQHKatqEKER 654
Cdd:TIGR02169 328 EAEIDKLLAEIEelereiEEERKRRDKLTEEYAELKEEledLRAELEEVDKEFAETRDELKDYREKLEKLKRE---INEL 404
|
170
....*....|....*...
gi 755556650 655 NQELRRLQDEARKEEGQR 672
Cdd:TIGR02169 405 KRELDRLQEELQRLSEEL 422
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
533-689 |
5.46e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 5.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 533 EVGRAREQGEVERRRLIEVAQQLEQELQRAQESL-ASVGQQLEAARRGQQESTEEAASlRQELTQQQEIYGQALQEKVAE 611
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEARkAEDARKAEEARKAEDAKRVEIAR-KAEDARKAEEARKAEDAKKAE 1179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 612 -----VETRLREQL--SDTKRRLNEARR--EQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELER 682
Cdd:PTZ00121 1180 aarkaEEVRKAEELrkAEDARKAEAARKaeEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
|
....*..
gi 755556650 683 DKNLMLA 689
Cdd:PTZ00121 1260 ARMAHFA 1266
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
504-668 |
6.44e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 6.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 504 DLSVELEQLREERNRLDAELQLSAHLIQ--------QEVGRAREQGEVERRRLIE---VAQQLEQELQRAQESLASVGQQ 572
Cdd:COG4913 628 EAEERLEALEAELDALQERREALQRLAEyswdeidvASAEREIAELEAELERLDAssdDLAALEEQLEELEAELEELEEE 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 573 LEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLsdtKRRLNEARREQAKAVVSLRQIQHKATQEK 652
Cdd:COG4913 708 LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF---AAALGDAVERELRENLEERIDALRARLNR 784
|
170
....*....|....*.
gi 755556650 653 ERnQELRRLQDEARKE 668
Cdd:COG4913 785 AE-EELERAMRAFNRE 799
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
402-606 |
1.13e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 402 KSLQMELDQAQEARR--RQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMA 479
Cdd:COG3206 185 PELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPV 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 480 RKVALAQLRvessppseaappldtDLSVELEQLRE-------ERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVA 552
Cdd:COG3206 265 IQQLRAQLA---------------ELEAELAELSArytpnhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQARE 329
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 755556650 553 QQLEQELQRAQESLASVGQQLEaarrgqqesteEAASLRQELTQQQEIYGQALQ 606
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELEA-----------ELRRLEREVEVARELYESLLQ 372
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
98-680 |
1.31e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 98 LQELRRLEEEVRSLREtSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKH-----KELEEIQ 172
Cdd:TIGR00618 235 LQQTQQSHAYLTQKRE-AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAvtqieQQAQRIH 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 173 SLHQEQLSSLTQAHQKALDSLASKAEGLE--KSLNSL-----ETKRAGEAKQLAMAQKE-ADMLRNQLSKTQEELEAQVT 244
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEqrRLLQTLhsqeiHIRDAHEVATSIREISCqQHTLTQHIHTLQQQKTTLTQ 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 245 LVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEP 324
Cdd:TIGR00618 394 KLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQ 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 325 EFPKKCRSLLRNWREKVFALMVQLKAQDLQH--RDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERmstk 402
Cdd:TIGR00618 474 QLQTKEQIHLQETRKKAVVLARLLELQEEPCplCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYH---- 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 403 slqmELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKV 482
Cdd:TIGR00618 550 ----QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 483 ALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRldaELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRA 562
Cdd:TIGR00618 626 DLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR---EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQC 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 563 QESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLRE--------------------QLSD 622
Cdd:TIGR00618 703 QTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKArteahfnnneevtaalqtgaELSH 782
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 755556650 623 TKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQEL 680
Cdd:TIGR00618 783 LAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEK 840
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
508-669 |
1.55e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 508 ELEQLREERNRLDaelQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRgQQESTEEA 587
Cdd:COG4717 86 KEEEYAELQEELE---ELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEE-RLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 588 ASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARK 667
Cdd:COG4717 162 EEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL 241
|
..
gi 755556650 668 EE 669
Cdd:COG4717 242 EE 243
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
149-430 |
1.73e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 149 ALAGAEMVRKNLEEAKHKELEEIQSLhQEQLSSLtqahQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADML 228
Cdd:TIGR02169 654 AMTGGSRAPRGGILFSRSEPAELQRL-RERLEGL----KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 229 RNQLSKTQEELEAQVTLVESLRKYVgEQVLPEFPSQEWELERKELldTLKHLKEDRADLQAtvELLQVRVQSLTHMLALQ 308
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEI-ENVKSELKELEARIEELEE--DLHKLEEALNDLEA--RLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 309 EEELTRKIQPLDPLEPEFPKK--CRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVtsqsQEQAILQRA 386
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLtlEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL----EELEAALRD 879
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 755556650 387 LQDKTAQVEVERmstKSLQMELDQAQEARRRQEQQIASAEEQLK 430
Cdd:TIGR02169 880 LESRLGDLKKER---DELEAQLRELERKIEELEAQIEKKRKRLS 920
|
|
| TolC |
COG1538 |
Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis]; |
337-643 |
1.80e-04 |
|
Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441147 [Multi-domain] Cd Length: 367 Bit Score: 44.64 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 337 WREKVFALMVQLKAQDLQHRDSTSQLRIQVAE-------LQEQVTSQSQEQAILQRALQDKTAQVEVERMS---TKSLQM 406
Cdd:COG1538 49 RRARIEAAKAQAEAAEADLRAARLDLAAEVAQayfdllaAQEQLALAEENLALAEELLELARARYEAGLASrldVLQAEA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 407 ELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLsnrLSYAVRKVHTIKGLMAR-KVALA 485
Cdd:COG1538 129 QLAQARAQLAQAEAQLAQARNALALLLGLPPPAPLDLPDPLPPLPPLPPSLPGL---PSEALERRPDLRAAEAQlEAAEA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 486 QLRVESsppSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLievaqQLEQELQRAQES 565
Cdd:COG1538 206 EIGVAR---AAFLPSLSLSASYGYSSSDDLFSGGSDTWSVGLSLSLPLFDGGRNRARVRAAKA-----QLEQAEAQYEQT 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 566 LASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRL-----REQLSDTKRRLNEARREQAKAVVS 640
Cdd:COG1538 278 VLQALQEVEDALAALRAAREQLEALEEALEAAEEALELARARYRAGLASLLdvldaQRELLQAQLNLIQARYDYLLALVQ 357
|
...
gi 755556650 641 LRQ 643
Cdd:COG1538 358 LYR 360
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-430 |
1.95e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 180 SSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKyvgeqvlp 259
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK-------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 260 efpsqewelerkELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDplepefpkkcrsLLRNWRE 339
Cdd:COG4942 91 ------------EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ------------YLKYLAP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 340 KVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQE 419
Cdd:COG4942 147 ARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250
....*....|.
gi 755556650 420 QQIASAEEQLK 430
Cdd:COG4942 227 ALIARLEAEAA 237
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
104-683 |
1.95e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 104 LEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAgaeMVRKNLEeakhkeleeiqslHQEQLsslt 183
Cdd:COG3096 290 LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLN---LVQTALR-------------QQEKI---- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 184 QAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTlveslRKYVGEQVLPEFPS 263
Cdd:COG3096 350 ERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQT-----RAIQYQQAVQALEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 264 QEWELERKELldTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEE---------ELTRKIQPLDPLEPEFpKKCRSLL 334
Cdd:COG3096 425 ARALCGLPDL--TPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAarrqfekayELVCKIAGEVERSQAW-QTARELL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 335 RNWREKvfalmvQLKAQDLQhrdstsQLRIQVAELQEQVTSQSQEQAIL----QRALQDKTAQVEVERMSTK------SL 404
Cdd:COG3096 502 RRYRSQ------QALAQRLQ------QLRAQLAELEQRLRQQQNAERLLeefcQRIGQQLDAAEELEELLAEleaqleEL 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 405 QMELDQAQEAR---RRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKG----L 477
Cdd:COG3096 570 EEQAAEAVEQRselRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVerdeL 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 478 MARKVAL-AQLRVESSPPSEAAPPLDT---------------DLSVE--------------------LEQLREERNRLDA 521
Cdd:COG3096 650 AARKQALeSQIERLSQPGGAEDPRLLAlaerlggvllseiydDVTLEdapyfsalygparhaivvpdLSAVKEQLAGLED 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 522 ELQlSAHLIQQEV----GRAREQGEVERRRLIEVAQQLEQELQRAQESL---ASVGQQLEAARRGQQESTEEAASLRQEL 594
Cdd:COG3096 730 CPE-DLYLIEGDPdsfdDSVFDAEELEDAVVVKLSDRQWRYSRFPEVPLfgrAAREKRLEELRAERDELAEQYAKASFDV 808
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 595 TQQQEIYgQALQEKVAE-----VETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEE 669
Cdd:COG3096 809 QKLQRLH-QAFSQFVGGhlavaFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLA 887
|
650
....*....|....
gi 755556650 670 GQRLTRRVQELERD 683
Cdd:COG3096 888 DETLADRLEELREE 901
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
86-643 |
1.98e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 86 ALSQQAELISRQLQELRRLEEEVRSLREtslqQKMRLEtQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRK-NLEEAK 164
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDARE----QIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRlELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 165 HKELEEIQSLHQEQLSSLTQAHQKALDSLAS-----------KAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLS 233
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDEleaqirgnggdRLEQLEREIERLERELEERERRRARLEALLAALGLPLP 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 234 KTQEELEAQVTLVESLRKYVGEQvlpefpSQEWELERKELLDTLKHLKEDRADLQATVELLQVRV----QSLTHMLALQE 309
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEE------LEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALA 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 310 EELTRKIQPLDPL------EPEFPKkcrsllrnWR---EKV-----FALMV--QLKAQDLQHRDSTS-QLRIQVAELQEQ 372
Cdd:COG4913 451 EALGLDEAELPFVgelievRPEEER--------WRgaiERVlggfaLTLLVppEHYAAALRWVNRLHlRGRLVYERVRTG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 373 VTSQSQEQAiLQRALqdktaqveVERMSTKS------LQMELDQA--------QEARRRQEQQIaSAEEQLK--FVVGAM 436
Cdd:COG4913 523 LPDPERPRL-DPDSL--------AGKLDFKPhpfrawLEAELGRRfdyvcvdsPEELRRHPRAI-TRAGQVKgnGTRHEK 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 437 N-------------STQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKglmARKVALAQLRVESSPPSEAAPPLDt 503
Cdd:COG4913 593 DdrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ---ERREALQRLAEYSWDEIDVASAER- 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 504 dlsvELEQLREERNRLDAELQLSAHLiQQEVGRAREQgeverrrlievAQQLEQELQRAQESLASVGQQLEAARRGQQES 583
Cdd:COG4913 669 ----EIAELEAELERLDASSDDLAAL-EEQLEELEAE-----------LEELEEELDELKGEIGRLEKELEQAEEELDEL 732
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755556650 584 TE--EAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQ 643
Cdd:COG4913 733 QDrlEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMR 794
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
74-315 |
2.63e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 74 RRGRSLELGFSSALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGA 153
Cdd:COG4942 2 RKLLLLALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 154 EMVRKNLE---EAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKS------LNSLETKRAGEAKQLAMAQKE 224
Cdd:COG4942 82 EAELAELEkeiAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlqyLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 225 ADMLRNQLSKTQEELEAQVTLVESLRkyvgeqvlpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHM 304
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEER-------------AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|.
gi 755556650 305 LALQEEELTRK 315
Cdd:COG4942 229 IARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
268-539 |
3.03e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 268 LERKELLDTLKHLKEDRADL---QATVELLQVRVQSLTHMLALQEE--ELTRKIQPLDplepefpkKCRSLLRNWREkvf 342
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLeraHEALEDAREQIELLEPIRELAERyaAARERLAELE--------YLRAALRLWFA--- 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 343 almvQLKAQDLQHRdsTSQLRIQVAELQEQVTSQSQEQAILQ---RALQDKTAQVEVERMstKSLQMELDQAQEARRRQE 419
Cdd:COG4913 287 ----QRRLELLEAE--LEELRAELARLEAELERLEARLDALReelDELEAQIRGNGGDRL--EQLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 420 QQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKvhtikglmaRKVALAQLRVESsppseaap 499
Cdd:COG4913 359 RRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAE---------AEAALRDLRREL-------- 421
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 755556650 500 pldTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRARE 539
Cdd:COG4913 422 ---RELEAEIASLERRKSNIPARLLALRDALAEALGLDEA 458
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
96-694 |
3.63e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 96 RQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLH 175
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 176 QEQLssltQAHQKALDSLASKAEGLEKSLNSLETKRAG--------EAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVE 247
Cdd:pfam02463 320 EKEK----KKAEKELKKEKEEIEELEKELKELEIKREAeeeeeeelEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 248 SLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFP 327
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 328 KK-------CRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMS 400
Cdd:pfam02463 476 ETqlvklqeQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 401 TKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYA-VRKVHTIKGLMA 479
Cdd:pfam02463 556 TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAkVVEGILKDTELT 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 480 RKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQE----VGRAREQGEVERRRLIEVAQQL 555
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELakeeILRRQLEIKKKEQREKEELKKL 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 556 EQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQA 635
Cdd:pfam02463 716 KLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEK 795
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 755556650 636 KAVVsLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDKNLMLATLKQE 694
Cdd:pfam02463 796 LKAQ-EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
267-583 |
5.58e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 5.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 267 ELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMV 346
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 347 QLkaqdlqhrdstSQLRIQVAELQEQvtsqsqeqailQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAE 426
Cdd:TIGR02169 302 EI-----------ASLERSIAEKERE-----------LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 427 EQLKFVvgaMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSppseaappldTDLS 506
Cdd:TIGR02169 360 AELKEE---LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL----------ADLN 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 507 VELEQLREERNRLDAELQLSAHLIQQEVGRA------REQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQ 580
Cdd:TIGR02169 427 AAIAGIEAKINELEEEKEDKALEIKKQEWKLeqlaadLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
...
gi 755556650 581 QES 583
Cdd:TIGR02169 507 RGG 509
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
70-683 |
6.11e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 70 QGLGRRGRSLELGFSSALSQQAELISRQLQELRRLEEEVRSLRETSLQ----QKMRLETQAVELDALAvaEKAGQAEAEG 145
Cdd:pfam12128 261 SHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGelsaADAAVAKDRSELEALE--DQHGAFLDAD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 146 LRTALAGAEM---VRKNLEEakhkeLEEIQSLHQEQLSSLTQAHQ----KALDSLASKAEGLEKSL-NSLETKRAGEAKQ 217
Cdd:pfam12128 339 IETAAADQEQlpsWQSELEN-----LEERLKALTGKHQDVTAKYNrrrsKIKEQNNRDIAGIKDKLaKIREARDRQLAVA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 218 LAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRAD-----LQATVE 292
Cdd:pfam12128 414 EDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAanaevERLQSE 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 293 LLQVRVQSLTHMLALQEEE--LTRKIQPLDPLEPEFPKKCRSLLRNWREKVfalmvQLKAQDLQHRDSTSQLRIQVAELQ 370
Cdd:pfam12128 494 LRQARKRRDQASEALRQASrrLEERQSALDELELQLFPQAGTLLHFLRKEA-----PDWEQSIGKVISPELLHRTDLDPE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 371 EQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRM 450
Cdd:pfam12128 569 VWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTAL 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 451 DQAVARIPSLSNRLSyavrkvhtikglmARKVALAQLRVEssppseaappldtdlsvELEQLREERNRLDAELQLSAHLI 530
Cdd:pfam12128 649 KNARLDLRRLFDEKQ-------------SEKDKKNKALAE-----------------RKDSANERLNSLEAQLKQLDKKH 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 531 QQEVGRAREQGEVERRRLIEVAQQLEQELQRAqesLASVGQQLEAARrgqqesteeaASLRQELTQQQEIYGQALQEKVA 610
Cdd:pfam12128 699 QAWLEEQKEQKREARTEKQAYWQVVEGALDAQ---LALLKAAIAARR----------SGAKAELKALETWYKRDLASLGV 765
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755556650 611 EVET--RLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERD 683
Cdd:pfam12128 766 DPDViaKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLR 840
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
142-458 |
6.34e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 6.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 142 EAEGLRTALAGAEMVRkNLEEAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGL---------EKSLNSLETK-- 210
Cdd:PRK04863 287 EALELRRELYTSRRQL-AAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALrqqekieryQADLEELEERle 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 211 -----RAGEAKQLAM-------AQKEADMLRNQLSKTQEELEAQVTL-------VESLRKYVGEQVLPEFpsqewelerk 271
Cdd:PRK04863 366 eqnevVEEADEQQEEnearaeaAEEEVDELKSQLADYQQALDVQQTRaiqyqqaVQALERAKQLCGLPDL---------- 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 272 elldTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEE---------ELTRKIqpLDPLEPEFPKKC-RSLLRNWREkv 341
Cdd:PRK04863 436 ----TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAahsqfeqayQLVRKI--AGEVSRSEAWDVaRELLRRLRE-- 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 342 falmvqLKAQDlqhrDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVErmstkslqmelDQAQEARRRQEQQ 421
Cdd:PRK04863 508 ------QRHLA----EQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDE-----------DELEQLQEELEAR 566
|
330 340 350
....*....|....*....|....*....|....*..
gi 755556650 422 IASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIP 458
Cdd:PRK04863 567 LESLSESVSEARERRMALRQQLEQLQARIQRLAARAP 603
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
544-694 |
8.91e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 8.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 544 ERRRLIEVA----------QQLEQELQRAQESLASV-------GQQLEAARRgQQESTEEAASLRQELTQ-QQEIYGQAL 605
Cdd:COG1196 156 ERRAIIEEAagiskykerkEEAERKLEATEENLERLedilgelERQLEPLER-QAEKAERYRELKEELKElEAELLLLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 606 QEkvaevetrLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEgQRLTRRVQELERDKN 685
Cdd:COG1196 235 RE--------LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQDIA 305
|
....*....
gi 755556650 686 LMLATLKQE 694
Cdd:COG1196 306 RLEERRREL 314
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
161-697 |
9.09e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 9.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 161 EEAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEaDMLRNQLSKTQEELE 240
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQK-REAQEEQLKKQQLLK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 241 AQVTLVESLRKYVGEQVLPEfPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRK--IQP 318
Cdd:TIGR00618 264 QLRARIEELRAQEAVLEETQ-ERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQssIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 319 LDPLEPEFPKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQailqraLQDKTAQVEVER 398
Cdd:TIGR00618 343 QRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDI------LQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 399 MSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKvHTIKGLM 478
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRK-KAVVLAR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 479 ARKVALAQLRVESSPPSEAAPPLDTDLS----VELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEvERRRLIEVAQQ 554
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPgpltRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKE-QMQEIQQSFSI 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 555 LEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEiygqALQEKVAEVETRLREQlsdtkrrlnEARREQ 634
Cdd:TIGR00618 575 LTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR----KLQPEQDLQDVRLHLQ---------QCSQEL 641
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755556650 635 AKAVVSLRQIQHKATQEKERNQELRRLQDEARK-EEGQRLTRRVQELERDKNLMLATLKQEGLL 697
Cdd:TIGR00618 642 ALKLTALHALQLTLTQERVREHALSIRVLPKELlASRQLALQKMQSEKEQLTYWKEMLAQCQTL 705
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
351-669 |
9.30e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 9.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 351 QDLQHRDSTSQLRIQVAELQEQVTSQSQ--EQAILQRALQDKTAQV--EVERMSTKSlQMELDQ-AQEARRRQEQQIAsa 425
Cdd:pfam17380 290 QEKFEKMEQERLRQEKEEKAREVERRRKleEAEKARQAEMDRQAAIyaEQERMAMER-ERELERiRQEERKRELERIR-- 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 426 EEQLKFVVGAMNSTQaKLQSTMTRMDQAVARipSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSEaappldtdl 505
Cdd:pfam17380 367 QEEIAMEISRMRELE-RLQMERQQKNERVRQ--ELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ--------- 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 506 sVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTE 585
Cdd:pfam17380 435 -REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEER 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 586 EAASLRQELTQQQEIYGQALQEKVAEVETRlreqlsdTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEA 665
Cdd:pfam17380 514 KRKLLEKEMEERQKAIYEEERRREAEEERR-------KQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEK 586
|
....
gi 755556650 666 RKEE 669
Cdd:pfam17380 587 ARAE 590
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
547-668 |
1.06e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 547 RLIEVAQQleqELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELtqqqEIYGQALQEKVAEVETRLREQLSDTKRR 626
Cdd:PRK00409 502 NIIEEAKK---LIGEDKEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQEEEDKLLEEAEKE 574
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 755556650 627 ----LNEARREQAKAVVSLRQIQ-HKATQEKERN-QELRRLQDEARKE 668
Cdd:PRK00409 575 aqqaIKEAKKEADEIIKELRQLQkGGYASVKAHElIEARKRLNKANEK 622
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
88-686 |
1.17e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 88 SQQAELISRQLQELRRLEEEVR-SLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALagaEMVRKNLEEAK-- 164
Cdd:pfam15921 84 SHQVKDLQRRLNESNELHEKQKfYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQL---QNTVHELEAAKcl 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 165 HKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSlnslETKRAGEakQLAMAQKEADMLRNQLSKTQEELEAQVT 244
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEA----SGKKIYE--HDSMSTMHFRSLGSAISKILRELDTEIS 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 245 lveslrkYVGEQVLPEfpsqewelerKELLDTLKHLKEDRADLqatveLLQVRVQSLTHMLALQEEELTrkiqpldplep 324
Cdd:pfam15921 235 -------YLKGRIFPV----------EDQLEALKSESQNKIEL-----LLQQHQDRIEQLISEHEVEIT----------- 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 325 EFPKKCRSLlrnwREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSl 404
Cdd:pfam15921 282 GLTEKASSA----RSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANS- 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 405 qmELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKV------------- 471
Cdd:pfam15921 357 --ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELddrnmevqrleal 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 472 -----HTIKGLMARKVALAQLRVESSppsEAAPPLDTDLSVELEQLREERNRLDAE---LQLSAHLIQ------QEVGRA 537
Cdd:pfam15921 435 lkamkSECQGQMERQMAAIQGKNESL---EKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSERTVSdltaslQEKERA 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 538 REQGEVERRRL---IEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQ------ALQEK 608
Cdd:pfam15921 512 IEATNAEITKLrsrVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagAMQVE 591
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755556650 609 VAEVEtrlrEQLSDTKRRLNEARREQAKAVVSLRQIQHKATqekerNQELRRLQDEARKEEGQRLTRRVQElERDKNL 686
Cdd:pfam15921 592 KAQLE----KEINDRRLELQEFKILKDKKDAKIRELEARVS-----DLELEKVKLVNAGSERLRAVKDIKQ-ERDQLL 659
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
84-380 |
1.87e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.96 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 84 SSALSQQAELISRQLQEL-RRLEEEVRSLRET--SLQQKMRLETQAVEldALAVAEKAGQAEAEGLrTALAGAEMVRKNL 160
Cdd:PRK10929 104 TDALEQEILQVSSQLLEKsRQAQQEQDRAREIsdSLSQLPQQQTEARR--QLNEIERRLQTLGTPN-TPLAQAQLTALQA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 161 EEAKHKELeeIQSLHQEQLSsltqahqkaldslASKAEGLEKSLNSLETKRAGEAKQLAMAqkeadmLRNQL-SKTQEEL 239
Cdd:PRK10929 181 ESAALKAL--VDELELAQLS-------------ANNRQELARLRSELAKKRSQQLDAYLQA------LRNQLnSQRQREA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 240 EAQVTLVESLRKYVGEqvLPEFPSQEWELERkELLDTLKHlKEDRADL------QATVELLQVRvQSLThmlALQE---- 309
Cdd:PRK10929 240 ERALESTELLAEQSGD--LPKSIVAQFKINR-ELSQALNQ-QAQRMDLiasqqrQAASQTLQVR-QALN---TLREqsqw 311
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755556650 310 --------EELTRKIQPLdplePEFPKKcRSLLRNwrekvfalMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQ 380
Cdd:PRK10929 312 lgvsnalgEALRAQVARL----PEMPKP-QQLDTE--------MAQLRVQRLRYEDLLNKQPQLRQIRQADGQPLTAEQ 377
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
177-386 |
2.06e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 177 EQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQ 256
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 257 V-----------LPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLdplepe 325
Cdd:COG4942 110 LralyrlgrqppLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL------ 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755556650 326 fpKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRA 386
Cdd:COG4942 184 --EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
509-677 |
2.19e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 509 LEQLREERNRLDAELQLSAhliQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAA 588
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEA---KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELE 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 589 SLRQELTQQQEIYGQALQEKVAEVEtrlreqlsdtkrRLNEARREQAKAVVsLRQIQHKAtqEKERNQELRRLQDEArKE 668
Cdd:PRK12704 121 QKQQELEKKEEELEELIEEQLQELE------------RISGLTAEEAKEIL-LEKVEEEA--RHEAAVLIKEIEEEA-KE 184
|
....*....
gi 755556650 669 EGQRLTRRV 677
Cdd:PRK12704 185 EADKKAKEI 193
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
497-643 |
2.21e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.85 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 497 AAPPLDTDLSVELeqLRE--ERNR-LDAELQLSAHLiqQEVGRAREQGEVERRRLIEVAQ---QLEQELQRAQESLASVG 570
Cdd:PHA03247 842 APPPLATSPQAIL--LREllQRGQdLEAPADLAAWL--ASLGDAAGQGLVERKELDELARaihKINERQVRRSSGLAELE 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 571 --QQLEAARRGQQES-------------------TEEAASLRQE-LTQQQEIYGQALQEKVA-EVETRLREQLSDTKRRL 627
Cdd:PHA03247 918 rfEALDAALRQELESeaafvpapgaapyadagglSPETRRLAEDaLRQAKAMAAAKLTDELSpEARERLRARARAIEAML 997
|
170
....*....|....*.
gi 755556650 628 NEArREQAKAVVSLRQ 643
Cdd:PHA03247 998 EEA-RERAEAARAARE 1012
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
483-640 |
2.26e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 483 ALAQLRVE-SSPPSEaappLDtDLSVELEQLREERNRLdaelqlsahliqqevgrAREQGEVERRRLievaQQLEQELQR 561
Cdd:COG0542 398 AAARVRMEiDSKPEE----LD-ELERRLEQLEIEKEAL-----------------KKEQDEASFERL----AELRDELAE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 562 AQESLAsvgqQLEAARRGQQESTEEAASLRQELTQQqeiYGQ--ALQEKVAEVETRLREQLSDTKRRLNEarrEQAKAVV 639
Cdd:COG0542 452 LEEELE----ALKARWEAEKELIEEIQELKEELEQR---YGKipELEKELAELEEELAELAPLLREEVTE---EDIAEVV 521
|
.
gi 755556650 640 S 640
Cdd:COG0542 522 S 522
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
98-629 |
2.74e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 98 LQELRRLEEEVRSLRETslqqkmrLETQAVELDALAVAEKAGQAEAEGLRTALAGAeMVRKNLEEAKHKELEEIQSLHQE 177
Cdd:PRK02224 250 REELETLEAEIEDLRET-------IAETEREREELAEEVRDLRERLEELEEERDDL-LAEAGLDDADAEAVEARREELED 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 178 QLSSLTQA---HQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVG 254
Cdd:PRK02224 322 RDEELRDRleeCRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 255 EQvlpefPSQEWELE--RKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLAlqEEELTRKIQPLDplepEFPKKCRs 332
Cdd:PRK02224 402 DA-----PVDLGNAEdfLEELREERDELREREAELEATLRTARERVEEAEALLE--AGKCPECGQPVE----GSPHVET- 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 333 lLRNWREKVFALMVQLKAQDLQHRDSTSQLR--IQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQ---ME 407
Cdd:PRK02224 470 -IEEDRERVEELEAELEDLEEEVEEVEERLEraEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELReraAE 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 408 LDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQavaripsLSNRLSYAVRKVHTIKGLMARKVALAQL 487
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-------IRTLLAAIADAEDEIERLREKREALAEL 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 488 RVESSppseaappldtdlsvelEQLREERNRLDaelQLSAHLIQQEVGRAREqgevERRRLIEVAQQLEQELQRAQESLA 567
Cdd:PRK02224 622 NDERR-----------------ERLAEKRERKR---ELEAEFDEARIEEARE----DKERAEEYLEQVEEKLDELREERD 677
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755556650 568 SvgqqLEAARRGQQESTEEAASLRQELTQQQE-------IYGQA--LQEKVAEVETRLREQLSDT-KRRLNE 629
Cdd:PRK02224 678 D----LQAEIGAVENELEELEELRERREALENrvealeaLYDEAeeLESMYGDLRAELRQRNVETlERMLNE 745
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
500-620 |
3.37e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 40.13 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 500 PLDTDLSVELEQLREERNRLDAELQLSAHLIQQevgrareqgevERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRG 579
Cdd:pfam09787 40 DSSTALTLELEELRQERDLLREEIQKLRGQIQQ-----------LRTELQELEAQQQEEAESSREQLQELEEQLATERSA 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 755556650 580 QQESTEEAASLRQE-------LTQQQEIYGQALQEKVAEVEtRLREQL 620
Cdd:pfam09787 109 RREAEAELERLQEElryleeeLRRSKATLQSRIKDREAEIE-KLRNQL 155
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
497-680 |
3.93e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 497 AAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGE--------------VERRRLIEVAQQLEQELQRA 562
Cdd:PRK04863 827 LAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEglsalnrllprlnlLADETLADRVEEIREQLDEA 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 563 QESLASVGQ------QLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLR----------EQLSDT--- 623
Cdd:PRK04863 907 EEAKRFVQQhgnalaQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRrahfsyedaaEMLAKNsdl 986
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755556650 624 ----KRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDeARKEEGQRLTRRVQEL 680
Cdd:PRK04863 987 neklRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYD-AKRQMLQELKQELQDL 1046
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
86-467 |
4.96e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 86 ALSQQAELISRQLQELRRLEEEVRSLRE--TSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEA 163
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAelEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 164 KH------KELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLET-----KRAGEAKQLAMAQKEADMLRNQL 232
Cdd:COG4717 162 EEeleeleAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEeleeaQEELEELEEELEQLENELEAAAL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 233 SKTQEELEAQVTLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEEL 312
Cdd:COG4717 242 EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEEL 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 313 TRKIQPLDPLEPEFPKKCRSLLRNWREKVFALmvqLKAQDLQHRDSTSQLRIQVAELQEQVTSQSqEQAILQRALQDKTA 392
Cdd:COG4717 322 EELLAALGLPPDLSPEELLELLDRIEELQELL---REAEELEEELQLEELEQEIAALLAEAGVED-EEELRAALEQAEEY 397
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755556650 393 QVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYA 467
Cdd:COG4717 398 QELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
551-682 |
5.59e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 551 VAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvetrLREQLSDTKRRLNEA 630
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE----KDERIERLERELSEA 453
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 755556650 631 RREQAKAVVSLRQIQHKatqeKERNQELRRLQDEARkEEGQRLTRRVQELER 682
Cdd:COG2433 454 RSEERREIRKDREISRL----DREIERLERELEEER-ERIEELKRKLERLKE 500
|
|
| tape_meas_lam_C |
TIGR01541 |
phage tail tape measure protein, lambda family; This model represents a relatively ... |
515-636 |
6.38e-03 |
|
phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273681 [Multi-domain] Cd Length: 332 Bit Score: 39.44 E-value: 6.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 515 ERNRLDAELQLSAHLIQQEVgrareQGEVERRRLIEVAQQLEQELQRAQESLasvGQQLEAARRG--QQESTEEAASLRQ 592
Cdd:TIGR01541 22 DEKSLQSRSDEIIALIKLEK-----LLEEAEQKALEALKKLAEATASIRAQN---KRQLDRFGLGdkQRERLDARLQIDR 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 755556650 593 ELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAK 636
Cdd:TIGR01541 94 TFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKASLNEALAELHA 137
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
346-679 |
6.66e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 6.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 346 VQLKAQDLQHRDSTSQLRIQVAELQEQVtsqSQEQAILQRA--LQDKTAQVEVErmstkSLQMELDQAQEARR---RQEQ 420
Cdd:COG3096 846 SELERELAQHRAQEQQLRQQLDQLKEQL---QLLNKLLPQAnlLADETLADRLE-----ELREELDAAQEAQAfiqQHGK 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 421 QIASAEEQLkfvvgamnstqAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQlrvessppSEAAPP 500
Cdd:COG3096 918 ALAQLEPLV-----------AVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSY--------EDAVGL 978
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 501 L--DTDLSvelEQLREernRLdaelqlsahliqqevgrarEQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARR 578
Cdd:COG3096 979 LgeNSDLN---EKLRA---RL-------------------EQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQ 1033
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 579 GQQEsteeaasLRQELtQQQEIYGQALQEKVAEVE-TRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQE 657
Cdd:COG3096 1034 TLQE-------LEQEL-EELGVQADAEAEERARIRrDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQ 1105
|
330 340
....*....|....*....|..
gi 755556650 658 LRRlQDEARKEEGQRLTRRVQE 679
Cdd:COG3096 1106 ERE-QVVQAKAGWCAVLRLARD 1126
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
505-648 |
7.40e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 39.33 E-value: 7.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 505 LSVELEQLREERNRLDAELQLsahliQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAAR------- 577
Cdd:pfam00529 63 AEAQLAKAQAQVARLQAELDR-----LQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRvlapigg 137
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755556650 578 -RGQQESTEEA------ASLRQELTQQQEIYGQALQEkVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKA 648
Cdd:pfam00529 138 iSRESLVTAGAlvaqaqANLLATVAQLDQIYVQITQS-AAENQAEVRSELSGAQLQIAEAEAELKLAKLDLERTEIRA 214
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
157-282 |
9.48e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 39.24 E-value: 9.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556650 157 RKNLEEAKHKELEEIQSLHQ--EQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADML---RNQ 231
Cdd:pfam05667 323 VETEEELQQQREEELEELQEqlEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLLpdaEEN 402
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 755556650 232 LSKTQEELEAQVTLVESLrkyvgeqvlpefpSQEWELERKELLDTLKHLKE 282
Cdd:pfam05667 403 IAKLQALVDASAQRLVEL-------------AGQWEKHRVPLIEEYRALKE 440
|
|
| |
