intermembrane lipid transfer protein VPS13A isoform X1 [Mus musculus]
List of domain hits
Name | Accession | Description | Interval | E-value | |||||||||||||||||||||||||||
VPS13 | pfam16908 | Vacuolar sorting-associated protein 13, N-terminal; VPS13 is a family of eukaryotic vacuolar ... |
139-371 | 2.05e-85 | |||||||||||||||||||||||||||
Vacuolar sorting-associated protein 13, N-terminal; VPS13 is a family of eukaryotic vacuolar sorting-associated 13 proteins that lies just downstream from Chorein_N family, pfam12624. The exact function of this domain is not known. : Pssm-ID: 465309 Cd Length: 234 Bit Score: 279.91 E-value: 2.05e-85
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MRS6 super family | cl34879 | Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; |
4-2005 | 4.52e-79 | |||||||||||||||||||||||||||
Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; The actual alignment was detected with superfamily member COG5043: Pssm-ID: 227376 [Multi-domain] Cd Length: 2552 Bit Score: 293.71 E-value: 4.52e-79
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VPS13_C | pfam16909 | Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar ... |
2758-2935 | 2.30e-67 | |||||||||||||||||||||||||||
Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar sorting-associated 13 proteins that lies at the C-terminus of the members, The exact function of this domain is not known. : Pssm-ID: 465310 [Multi-domain] Cd Length: 175 Bit Score: 225.50 E-value: 2.30e-67
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MRS6 super family | cl34879 | Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; |
2626-3054 | 3.27e-50 | |||||||||||||||||||||||||||
Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; The actual alignment was detected with superfamily member COG5043: Pssm-ID: 227376 [Multi-domain] Cd Length: 2552 Bit Score: 198.57 E-value: 3.27e-50
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SHR-BD super family | cl05933 | SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic ... |
2202-2349 | 2.72e-23 | |||||||||||||||||||||||||||
SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic proteins found on vacuolar-sorting associated proteins towards the C-terminus. In plants, the domain is found to be the region which interacts with SHR or the SHORT-ROOT transcription factor, a regulator of root-growth and asymmetric cell division that separates ground tissue into endodermis and cortex. The plant protein containing the SHR-BD is named SHRUBBY or SHBY, UniProtKB:Q9FT44. The actual alignment was detected with superfamily member pfam06650: Pssm-ID: 461974 [Multi-domain] Cd Length: 275 Bit Score: 102.38 E-value: 2.72e-23
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Name | Accession | Description | Interval | E-value | |||||||||||||||||||||||||||
VPS13 | pfam16908 | Vacuolar sorting-associated protein 13, N-terminal; VPS13 is a family of eukaryotic vacuolar ... |
139-371 | 2.05e-85 | |||||||||||||||||||||||||||
Vacuolar sorting-associated protein 13, N-terminal; VPS13 is a family of eukaryotic vacuolar sorting-associated 13 proteins that lies just downstream from Chorein_N family, pfam12624. The exact function of this domain is not known. Pssm-ID: 465309 Cd Length: 234 Bit Score: 279.91 E-value: 2.05e-85
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MRS6 | COG5043 | Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; |
4-2005 | 4.52e-79 | |||||||||||||||||||||||||||
Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; Pssm-ID: 227376 [Multi-domain] Cd Length: 2552 Bit Score: 293.71 E-value: 4.52e-79
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VPS13_mid_rpt | pfam16910 | Repeating coiled region of VPS13; This repeat is a family of repeating regions of eukaryotic ... |
567-791 | 9.10e-69 | |||||||||||||||||||||||||||
Repeating coiled region of VPS13; This repeat is a family of repeating regions of eukaryotic vacuolar sorting-associated 13 proteins. This repeating region shares a common core element that includes a well-conserved P-x4-P-x13-17-G sequence. The exact function of this repeat is not known. Pssm-ID: 465311 [Multi-domain] Cd Length: 236 Bit Score: 232.02 E-value: 9.10e-69
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VPS13_C | pfam16909 | Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar ... |
2758-2935 | 2.30e-67 | |||||||||||||||||||||||||||
Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar sorting-associated 13 proteins that lies at the C-terminus of the members, The exact function of this domain is not known. Pssm-ID: 465310 [Multi-domain] Cd Length: 175 Bit Score: 225.50 E-value: 2.30e-67
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MRS6 | COG5043 | Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; |
2626-3054 | 3.27e-50 | |||||||||||||||||||||||||||
Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; Pssm-ID: 227376 [Multi-domain] Cd Length: 2552 Bit Score: 198.57 E-value: 3.27e-50
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SHR-BD | pfam06650 | SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic ... |
2202-2349 | 2.72e-23 | |||||||||||||||||||||||||||
SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic proteins found on vacuolar-sorting associated proteins towards the C-terminus. In plants, the domain is found to be the region which interacts with SHR or the SHORT-ROOT transcription factor, a regulator of root-growth and asymmetric cell division that separates ground tissue into endodermis and cortex. The plant protein containing the SHR-BD is named SHRUBBY or SHBY, UniProtKB:Q9FT44. Pssm-ID: 461974 [Multi-domain] Cd Length: 275 Bit Score: 102.38 E-value: 2.72e-23
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ATG_C | pfam09333 | Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral ... |
2938-3017 | 5.17e-18 | |||||||||||||||||||||||||||
Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral membrane protein. It functions in both cytoplasm-to-vacuole targeting and in autophagy. Pssm-ID: 462761 [Multi-domain] Cd Length: 96 Bit Score: 81.40 E-value: 5.17e-18
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Name | Accession | Description | Interval | E-value | |||||||||||||||||||||||||||
VPS13 | pfam16908 | Vacuolar sorting-associated protein 13, N-terminal; VPS13 is a family of eukaryotic vacuolar ... |
139-371 | 2.05e-85 | |||||||||||||||||||||||||||
Vacuolar sorting-associated protein 13, N-terminal; VPS13 is a family of eukaryotic vacuolar sorting-associated 13 proteins that lies just downstream from Chorein_N family, pfam12624. The exact function of this domain is not known. Pssm-ID: 465309 Cd Length: 234 Bit Score: 279.91 E-value: 2.05e-85
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MRS6 | COG5043 | Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; |
4-2005 | 4.52e-79 | |||||||||||||||||||||||||||
Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; Pssm-ID: 227376 [Multi-domain] Cd Length: 2552 Bit Score: 293.71 E-value: 4.52e-79
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VPS13_mid_rpt | pfam16910 | Repeating coiled region of VPS13; This repeat is a family of repeating regions of eukaryotic ... |
567-791 | 9.10e-69 | |||||||||||||||||||||||||||
Repeating coiled region of VPS13; This repeat is a family of repeating regions of eukaryotic vacuolar sorting-associated 13 proteins. This repeating region shares a common core element that includes a well-conserved P-x4-P-x13-17-G sequence. The exact function of this repeat is not known. Pssm-ID: 465311 [Multi-domain] Cd Length: 236 Bit Score: 232.02 E-value: 9.10e-69
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VPS13_C | pfam16909 | Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar ... |
2758-2935 | 2.30e-67 | |||||||||||||||||||||||||||
Vacuolar-sorting-associated 13 protein C-terminal; VPS13_C is a family of eukaryotic vacuolar sorting-associated 13 proteins that lies at the C-terminus of the members, The exact function of this domain is not known. Pssm-ID: 465310 [Multi-domain] Cd Length: 175 Bit Score: 225.50 E-value: 2.30e-67
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MRS6 | COG5043 | Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; |
2626-3054 | 3.27e-50 | |||||||||||||||||||||||||||
Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]; Pssm-ID: 227376 [Multi-domain] Cd Length: 2552 Bit Score: 198.57 E-value: 3.27e-50
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Chorein_N | pfam12624 | N-terminal region of Chorein or VPS13; Although mutations in the full-length vacuolar protein ... |
3-117 | 2.35e-40 | |||||||||||||||||||||||||||
N-terminal region of Chorein or VPS13; Although mutations in the full-length vacuolar protein sorting 13A (VPS13A) protein in vertebrates lead to the disease of chorea-acanthocytosis, the exact function of any of the regions within the protein is not yet known. This region is the proposed leucine zipper at the N-terminus. The full-length protein is a transmembrane protein with a presumed role in vesicle-mediated sorting and intracellular protein transport. Pssm-ID: 463646 Cd Length: 116 Bit Score: 145.79 E-value: 2.35e-40
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SHR-BD | pfam06650 | SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic ... |
2202-2349 | 2.72e-23 | |||||||||||||||||||||||||||
SHR-binding domain of vacuolar-sorting associated protein 13; SHR-BD is a family of eukaryotic proteins found on vacuolar-sorting associated proteins towards the C-terminus. In plants, the domain is found to be the region which interacts with SHR or the SHORT-ROOT transcription factor, a regulator of root-growth and asymmetric cell division that separates ground tissue into endodermis and cortex. The plant protein containing the SHR-BD is named SHRUBBY or SHBY, UniProtKB:Q9FT44. Pssm-ID: 461974 [Multi-domain] Cd Length: 275 Bit Score: 102.38 E-value: 2.72e-23
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ATG_C | pfam09333 | Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral ... |
2938-3017 | 5.17e-18 | |||||||||||||||||||||||||||
Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral membrane protein. It functions in both cytoplasm-to-vacuole targeting and in autophagy. Pssm-ID: 462761 [Multi-domain] Cd Length: 96 Bit Score: 81.40 E-value: 5.17e-18
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VPS13_mid_rpt | pfam16910 | Repeating coiled region of VPS13; This repeat is a family of repeating regions of eukaryotic ... |
1141-1265 | 3.23e-05 | |||||||||||||||||||||||||||
Repeating coiled region of VPS13; This repeat is a family of repeating regions of eukaryotic vacuolar sorting-associated 13 proteins. This repeating region shares a common core element that includes a well-conserved P-x4-P-x13-17-G sequence. The exact function of this repeat is not known. Pssm-ID: 465311 [Multi-domain] Cd Length: 236 Bit Score: 47.90 E-value: 3.23e-05
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Blast search parameters | ||||
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