NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|755523987|ref|XP_011248164|]
View 

leucine-rich repeat-containing protein 27 isoform X1 [Mus musculus]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
58-164 9.82e-19

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 88.45  E-value: 9.82e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755523987  58 VLDLSQRGLRHLGK-FFKIPNLQQLHLQRNLLREIPEDFFQLlPNLTWLDLRYNKIKVLPSGIGSHKHLKTLLLERNPIK 136
Cdd:COG4886  140 ELDLSNNQLTDLPEpLGNLTNLKSLDLSNNQLTDLPEELGNL-TNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLT 218

                         90       100
                 ....*....|....*....|....*...
gi 755523987 137 MLPVELGQVTTLTALNLRHCPLEFPPRL 164
Cdd:COG4886  219 DLPEPLANLTNLETLDLSNNQLTDLPEL 246
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
58-164 9.82e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 88.45  E-value: 9.82e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755523987  58 VLDLSQRGLRHLGK-FFKIPNLQQLHLQRNLLREIPEDFFQLlPNLTWLDLRYNKIKVLPSGIGSHKHLKTLLLERNPIK 136
Cdd:COG4886  140 ELDLSNNQLTDLPEpLGNLTNLKSLDLSNNQLTDLPEELGNL-TNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLT 218

                         90       100
                 ....*....|....*....|....*...
gi 755523987 137 MLPVELGQVTTLTALNLRHCPLEFPPRL 164
Cdd:COG4886  219 DLPEPLANLTNLETLDLSNNQLTDLPEL 246
LRR_8 pfam13855
Leucine rich repeat;
76-135 2.86e-10

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 55.99  E-value: 2.86e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755523987   76 PNLQQLHLQRNLLREIPEDFFQLLPNLTWLDLRYNKIKVLPSGIGSH-KHLKTLLLERNPI 135
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGlPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 76-132 1.62e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 49.01  E-value: 1.62e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 755523987  76 PNLQQLHLQRNLLREIpeDFFQLLPNLTWLDLRYNKIKVLpSGIGSHKHLKTLLLER 132
Cdd:cd21340   46 TNLTHLYLQNNQIEKI--ENLENLVNLKKLYLGGNRISVV-EGLENLTNLEELHIEN 99
LRR smart00370
Leucine-rich repeats, outliers;
99-122 7.58e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 33.86  E-value: 7.58e-03
                           10        20
                   ....*....|....*....|....
gi 755523987    99 LPNLTWLDLRYNKIKVLPSGIGSH 122
Cdd:smart00370   1 LPNLRELDLSNNQLSSLPPGAFQG 24
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
58-164 9.82e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 88.45  E-value: 9.82e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755523987  58 VLDLSQRGLRHLGK-FFKIPNLQQLHLQRNLLREIPEDFFQLlPNLTWLDLRYNKIKVLPSGIGSHKHLKTLLLERNPIK 136
Cdd:COG4886  140 ELDLSNNQLTDLPEpLGNLTNLKSLDLSNNQLTDLPEELGNL-TNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLT 218

                         90       100
                 ....*....|....*....|....*...
gi 755523987 137 MLPVELGQVTTLTALNLRHCPLEFPPRL 164
Cdd:COG4886  219 DLPEPLANLTNLETLDLSNNQLTDLPEL 246
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
66-159 9.00e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 79.21  E-value: 9.00e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755523987  66 LRHLGKFFKIPNLQQLHLQRNLLREIPEDFFQLlPNLTWLDLRYNKIKVLPSGIGSHKHLKTLLLERNPIKMLPVELGQV 145
Cdd:COG4886  103 LSGNEELSNLTNLESLDLSGNQLTDLPEELANL-TNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNL 181

                         90
                 ....*....|....
gi 755523987 146 TTLTALNLRHCPLE 159
Cdd:COG4886  182 TNLKELDLSNNQIT 195
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
58-159 4.12e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 77.28  E-value: 4.12e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755523987  58 VLDLSQRGLRHLGKFF-KIPNLQQLHLQRNLLREIPEDFFQLlPNLTWLDLRYNKIKVLPSGIGSHKHLKTLLLERNPIK 136
Cdd:COG4886  163 SLDLSNNQLTDLPEELgNLTNLKELDLSNNQITDLPEPLGNL-TNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLT 241

                         90       100
                 ....*....|....*....|...
gi 755523987 137 MLPvELGQVTTLTALNLRHCPLE 159
Cdd:COG4886  242 DLP-ELGNLTNLEELDLSNNQLT 263
LRR_8 pfam13855
Leucine rich repeat;
76-135 2.86e-10

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 55.99  E-value: 2.86e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755523987   76 PNLQQLHLQRNLLREIPEDFFQLLPNLTWLDLRYNKIKVLPSGIGSH-KHLKTLLLERNPI 135
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGlPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
58-154 2.11e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 59.56  E-value: 2.11e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755523987  58 VLDLSQRGLRHLGKFF-KIPNLQQLHLQRNLLREIPEdfFQLLPNLTWLDLRYNKIKVLPSgIGSHKHLKTLLLERNPIK 136
Cdd:COG4886  209 ELDLSGNQLTDLPEPLaNLTNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTDLPP-LANLTNLKTLDLSNNQLT 285

                         90
                 ....*....|....*...
gi 755523987 137 MLPVELGQVTTLTALNLR 154
Cdd:COG4886  286 DLKLKELELLLGLNSLLL 303
LRR_8 pfam13855
Leucine rich repeat;
58-112 1.72e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 47.90  E-value: 1.72e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 755523987   58 VLDLSQRGLRHLGK--FFKIPNLQQLHLQRNLLREIPEDFFQLLPNLTWLDLRYNKI 112
Cdd:pfam13855   5 SLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 76-132 1.62e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 49.01  E-value: 1.62e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 755523987  76 PNLQQLHLQRNLLREIpeDFFQLLPNLTWLDLRYNKIKVLpSGIGSHKHLKTLLLER 132
Cdd:cd21340   46 TNLTHLYLQNNQIEKI--ENLENLVNLKKLYLGGNRISVV-EGLENLTNLEELHIEN 99
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
83-159 1.70e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 50.32  E-value: 1.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755523987  83 LQRNLLREIPEDFFQLLPNLTWLDLRY-----------------NKIKVLPSGIGSHKHLKTLLLERNPIKMLPVELGQV 145
Cdd:COG4886   79 LLLLSLLLLGLTDLGDLTNLTELDLSGneelsnltnlesldlsgNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNL 158

                         90
                 ....*....|....
gi 755523987 146 TTLTALNLRHCPLE 159
Cdd:COG4886  159 TNLKSLDLSNNQLT 172
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 59-165 8.71e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 47.09  E-value: 8.71e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755523987  59 LDLSQRGLRHLGKFFKIPNLQQLHLQRNLLREIPEdfFQLLPNLTWLDLRYNKIKVLPsGIGSHKHLKTLLLERNPIKMl 138
Cdd:cd21340    7 LYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIE-NLENLVNLKKLYLGGNRISV- 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 755523987 139 pVE-LGQVTTLTALNLRH------CPLEFPPRLI 165
Cdd:cd21340   83 -VEgLENLTNLEELHIENqrlppgEKLTFDPRSL 115
LRR smart00370
Leucine-rich repeats, outliers;
99-122 7.58e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 33.86  E-value: 7.58e-03
                           10        20
                   ....*....|....*....|....
gi 755523987    99 LPNLTWLDLRYNKIKVLPSGIGSH 122
Cdd:smart00370   1 LPNLRELDLSNNQLSSLPPGAFQG 24
LRR_TYP smart00369
Leucine-rich repeats, typical (most populated) subfamily;
99-122 7.58e-03

Leucine-rich repeats, typical (most populated) subfamily;


Pssm-ID: 197687 [Multi-domain]  Cd Length: 24  Bit Score: 33.86  E-value: 7.58e-03
                           10        20
                   ....*....|....*....|....
gi 755523987    99 LPNLTWLDLRYNKIKVLPSGIGSH 122
Cdd:smart00369   1 LPNLRELDLSNNQLSSLPPGAFQG 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH