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Conserved domains on  [gi|755519504|ref|XP_011248845|]
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WD repeat-containing protein 62 isoform X8 [Mus musculus]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 11455410)

WD40 repeat domain-containing protein similar to proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
PubMed:  10322433|8090199
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
365-745 1.28e-36

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 143.90  E-value: 1.28e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  365 ALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSelfHSSFVWNVevypefedqrACLPSGTFL-TCSSDNTIRFWNL 443
Cdd:COG2319    83 SVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTG---HTGAVRSV----------AFSPDGKTLaSGSADGTVRLWDL 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  444 DSAsdtrwqknifsdsllkvvyvendiQHLQDLSHFPDRgsengtpmdmkagVRVMQVSPDGQHLASGDRSGNLRIHELH 523
Cdd:COG2319   150 ATG------------------------KLLRTLTGHSGA-------------VTSVAFSPDGKLLASGSDDGTVRLWDLA 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  524 FMDELIKVEAHDAEVLCLEYSkPEtGvTLLASASRDRLIHVLNVEKNyNLEQTLDDHSSSITAIKFagTRDVQMI-SCGA 602
Cdd:COG2319   193 TGKLLRTLTGHTGAVRSVAFS-PD-G-KLLASGSADGTVRLWDLATG-KLLRTLTGHSGSVRSVAF--SPDGRLLaSGSA 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  603 DKSIYFRSAQqaSDGLHFVRTHHVAektTLYDMDIDITQKYVAVACQDRNVRVYNTVSGKQKKCYKGSQGDEGSllkVHV 682
Cdd:COG2319   267 DGTVRLWDLA--TGELLRTLTGHSG---GVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRS---VAF 338

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755519504  683 DPSGTFLATSCSDKSISLIDFYSGECVAKMFGHSEIVTGMKFTYDCRHLITVSGDSCVFIWHL 745
Cdd:COG2319   339 SPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDL 401
WD40 COG2319
WD40 repeat [General function prediction only];
94-445 7.72e-23

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 103.07  E-value: 7.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504   94 VVVLNPKENKQQHIFNTTRKSLSALAFSPDGKYIVTGenGHRPAVRIWDVEEKTQVAEMLGHKYGVACVAFSPNMKHIVS 173
Cdd:COG2319   144 VRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASG--SDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLAS 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  174 MGYqhDMVLNVWDWKKDIVVASNKV-SCRVIALSFSEDSSYFVTVG-NRHVRFWflEASTEAKVTStvpLVGRSGilgel 251
Cdd:COG2319   222 GSA--DGTVRLWDLATGKLLRTLTGhSGSVRSVAFSPDGRLLASGSaDGTVRLW--DLATGELLRT---LTGHSG----- 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  252 hnnifcgvacgrgrmagntfcvsysgllcqfnekrvldkWINlkvslssCLCVS--DELIFCGCTDGIVRIFQAHSLLYL 329
Cdd:COG2319   290 ---------------------------------------GVN-------SVAFSpdGKLLASGSDDGTVRLWDLATGKLL 323

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  330 TNLpKPHYLGVDvahgldssflfhrkaeavypdtvALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSelfHSSFVW 409
Cdd:COG2319   324 RTL-TGHTGAVR-----------------------SVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTG---HTGAVT 376

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 755519504  410 NVevypefedqrACLPSGTFL-TCSSDNTIRFWNLDS 445
Cdd:COG2319   377 SV----------AFSPDGRTLaSGSADGTVRLWDLAT 403
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 1009-1515 1.33e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1009 AAAHSSAPQTDP-----GPHLTMTAGKPEYPSteELSQPELPGLGNGSLPQTPEQEKFLRHhfETLTDAPTEGPMGIFLE 1083
Cdd:PHA03247 2562 AAPDRSVPPPRPaprpsEPAVTSRARRPDAPP--QSARPRAPVDDRGDPRGPAPPSPLPPD--THAPDPPPPSPSPAANE 2637

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1084 LFHGSLGDIKISETEDYFFNP---RLSISTQFLSRLQKTSrCPPRLPLHLMKSPEAQPVGQGGNQPKAGPLRAGTGYMSS 1160
Cdd:PHA03247 2638 PDPHPPPTVPPPERPRDDPAPgrvSRPRRARRLGRAAQAS-SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALV 2716

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1161 DGTNVLSG-QKAEETQEALSLL-VPPLSGLTSCVP----PSSVPPTDRKPPTPT--SVLTTGREQSISAPSSCSYLESTT 1232
Cdd:PHA03247 2717 SATPLPPGpAAARQASPALPAApAPPAVPAGPATPggpaRPARPPTTAGPPAPAppAAPAAGPPRRLTRPAVASLSESRE 2796

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1233 SSHAKTTRSISLGDSEGPVTAELPQSLHKPLSPGqelqaiPTTVALTSSIKDHEPAPlswgnhearASLKLTLSSVCEQL 1312
Cdd:PHA03247 2797 SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP------PTSAQPTAPPPPPGPPP---------PSLPLGGSVAPGGD 2861

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1313 LS--PPPQEPPITHVWSQEPvdvppsmavTVASFCAPsPVDMSTlglhSSMFLPKTSASGPLTPPAHLQLLETRS----- 1385
Cdd:PHA03247 2862 VRrrPPSRSPAAKPAAPARP---------PVRRLARP-AVSRST----ESFALPPDQPERPPQPQAPPPPQPQPQppppp 2927

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1386 ------RVPGSTAALLEPTPDASGVIADSPGHWD----------TEVP---TPELLGSVESVLHRLQTAFQEALDLYRML 1446
Cdd:PHA03247 2928 qpqpppPPPPRPQPPLAPTTDPAGAGEPSGAVPQpwlgalvpgrVAVPrfrVPQPAPSREAPASSTPPLTGHSLSRVSSW 3007

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1447 VSSSQLGPEQQQAQTELASTFhWILNQLEASNCMAAANLAPPQT-LPSPDPLSLPTLCPLASPNLQALLE 1515
Cdd:PHA03247 3008 ASSLALHEETDPPPVSLKQTL-WPPDDTEDSDADSLFDSDSERSdLEALDPLPPEPHDPFAHEPDPATPE 3076
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
365-745 1.28e-36

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 143.90  E-value: 1.28e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  365 ALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSelfHSSFVWNVevypefedqrACLPSGTFL-TCSSDNTIRFWNL 443
Cdd:COG2319    83 SVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTG---HTGAVRSV----------AFSPDGKTLaSGSADGTVRLWDL 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  444 DSAsdtrwqknifsdsllkvvyvendiQHLQDLSHFPDRgsengtpmdmkagVRVMQVSPDGQHLASGDRSGNLRIHELH 523
Cdd:COG2319   150 ATG------------------------KLLRTLTGHSGA-------------VTSVAFSPDGKLLASGSDDGTVRLWDLA 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  524 FMDELIKVEAHDAEVLCLEYSkPEtGvTLLASASRDRLIHVLNVEKNyNLEQTLDDHSSSITAIKFagTRDVQMI-SCGA 602
Cdd:COG2319   193 TGKLLRTLTGHTGAVRSVAFS-PD-G-KLLASGSADGTVRLWDLATG-KLLRTLTGHSGSVRSVAF--SPDGRLLaSGSA 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  603 DKSIYFRSAQqaSDGLHFVRTHHVAektTLYDMDIDITQKYVAVACQDRNVRVYNTVSGKQKKCYKGSQGDEGSllkVHV 682
Cdd:COG2319   267 DGTVRLWDLA--TGELLRTLTGHSG---GVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRS---VAF 338

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755519504  683 DPSGTFLATSCSDKSISLIDFYSGECVAKMFGHSEIVTGMKFTYDCRHLITVSGDSCVFIWHL 745
Cdd:COG2319   339 SPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDL 401
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 365-743 3.03e-27

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 113.58  E-value: 3.03e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  365 ALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSelfHSSFVWNVevypefedqRACLPSGTFLTCSSDNTIRFWNLD 444
Cdd:cd00200    14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG---HTGPVRDV---------AASADGTYLASGSSDKTIRLWDLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  445 SASDTRwqknIFsdsllkvvyvendIQHLQDlshfpdrgsengtpmdmkagVRVMQVSPDGQHLASGDRSGNLRIHELHF 524
Cdd:cd00200    82 TGECVR----TL-------------TGHTSY--------------------VSSVAFSPDGRILSSSSRDKTIKVWDVET 124

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  525 MDELIKVEAHDAEVLCLEYSKPETgvtLLASASRDRLIHVLNVEKNYnLEQTLDDHSSSITAIKFAGTRDvQMISCGADK 604
Cdd:cd00200   125 GKCLTTLRGHTDWVNSVAFSPDGT---FVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGE-KLLSSSSDG 199

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  605 SIyfrsaqqasdglhfvrthhvaekttlydmdiditqkyvavacqdrnvRVYNTVSGKQKKCYkgsQGDEGSLLKVHVDP 684
Cdd:cd00200   200 TI-----------------------------------------------KLWDLSTGKCLGTL---RGHENGVNSVAFSP 229

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 755519504  685 SGTFLATSCSDKSISLIDFYSGECVAKMFGHSEIVTGMKFTYDCRHLITVSGDSCVFIW 743
Cdd:cd00200   230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
WD40 COG2319
WD40 repeat [General function prediction only];
94-445 7.72e-23

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 103.07  E-value: 7.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504   94 VVVLNPKENKQQHIFNTTRKSLSALAFSPDGKYIVTGenGHRPAVRIWDVEEKTQVAEMLGHKYGVACVAFSPNMKHIVS 173
Cdd:COG2319   144 VRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASG--SDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLAS 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  174 MGYqhDMVLNVWDWKKDIVVASNKV-SCRVIALSFSEDSSYFVTVG-NRHVRFWflEASTEAKVTStvpLVGRSGilgel 251
Cdd:COG2319   222 GSA--DGTVRLWDLATGKLLRTLTGhSGSVRSVAFSPDGRLLASGSaDGTVRLW--DLATGELLRT---LTGHSG----- 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  252 hnnifcgvacgrgrmagntfcvsysgllcqfnekrvldkWINlkvslssCLCVS--DELIFCGCTDGIVRIFQAHSLLYL 329
Cdd:COG2319   290 ---------------------------------------GVN-------SVAFSpdGKLLASGSDDGTVRLWDLATGKLL 323

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  330 TNLpKPHYLGVDvahgldssflfhrkaeavypdtvALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSelfHSSFVW 409
Cdd:COG2319   324 RTL-TGHTGAVR-----------------------SVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTG---HTGAVT 376

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 755519504  410 NVevypefedqrACLPSGTFL-TCSSDNTIRFWNLDS 445
Cdd:COG2319   377 SV----------AFSPDGRTLaSGSADGTVRLWDLAT 403
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 112-442 1.69e-22

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 99.33  E-value: 1.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  112 RKSLSALAFSPDGKYIVTG-ENGHrpaVRIWDVEEKTQVAEMLGHKYGVACVAFSPNMKHIVSMGYqhDMVLNVWDWKKD 190
Cdd:cd00200     9 TGGVTCVAFSPDGKLLATGsGDGT---IKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS--DKTIRLWDLETG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  191 IVVAS-NKVSCRVIALSFSEDSSYFVTVG-NRHVRFWFLEASTEAKVTSTvplvgrsgilgelHNN-IFCGVACGRGRMA 267
Cdd:cd00200    84 ECVRTlTGHTSYVSSVAFSPDGRILSSSSrDKTIKVWDVETGKCLTTLRG-------------HTDwVNSVAFSPDGTFV 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  268 gntFCVSYSGL-----LCQFNEKRVL---DKWINlkvslssCLCVSD--ELIFCGCTDGIVRIFqahsllyltNLPKPHY 337
Cdd:cd00200   151 ---ASSSQDGTiklwdLRTGKCVATLtghTGEVN-------SVAFSPdgEKLLSSSSDGTIKLW---------DLSTGKC 211

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  338 LGVDVAHGldssflfhrkaEAVYpdtvALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSelfHSSFVWNVevypef 417
Cdd:cd00200   212 LGTLRGHE-----------NGVN----SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG---HTNSVTSL------ 267

                         330       340
                  ....*....|....*....|....*.
gi 755519504  418 edqrACLPSGTFL-TCSSDNTIRFWN 442
Cdd:cd00200   268 ----AWSPDGKRLaSGSADGTIRIWD 289
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 705-744 2.89e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 42.68  E-value: 2.89e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 755519504    705 SGECVAKMFGHSEIVTGMKFTYDCRHLITVSGDSCVFIWH 744
Cdd:smart00320    1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1009-1515 1.33e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1009 AAAHSSAPQTDP-----GPHLTMTAGKPEYPSteELSQPELPGLGNGSLPQTPEQEKFLRHhfETLTDAPTEGPMGIFLE 1083
Cdd:PHA03247 2562 AAPDRSVPPPRPaprpsEPAVTSRARRPDAPP--QSARPRAPVDDRGDPRGPAPPSPLPPD--THAPDPPPPSPSPAANE 2637

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1084 LFHGSLGDIKISETEDYFFNP---RLSISTQFLSRLQKTSrCPPRLPLHLMKSPEAQPVGQGGNQPKAGPLRAGTGYMSS 1160
Cdd:PHA03247 2638 PDPHPPPTVPPPERPRDDPAPgrvSRPRRARRLGRAAQAS-SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALV 2716

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1161 DGTNVLSG-QKAEETQEALSLL-VPPLSGLTSCVP----PSSVPPTDRKPPTPT--SVLTTGREQSISAPSSCSYLESTT 1232
Cdd:PHA03247 2717 SATPLPPGpAAARQASPALPAApAPPAVPAGPATPggpaRPARPPTTAGPPAPAppAAPAAGPPRRLTRPAVASLSESRE 2796

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1233 SSHAKTTRSISLGDSEGPVTAELPQSLHKPLSPGqelqaiPTTVALTSSIKDHEPAPlswgnhearASLKLTLSSVCEQL 1312
Cdd:PHA03247 2797 SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP------PTSAQPTAPPPPPGPPP---------PSLPLGGSVAPGGD 2861

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1313 LS--PPPQEPPITHVWSQEPvdvppsmavTVASFCAPsPVDMSTlglhSSMFLPKTSASGPLTPPAHLQLLETRS----- 1385
Cdd:PHA03247 2862 VRrrPPSRSPAAKPAAPARP---------PVRRLARP-AVSRST----ESFALPPDQPERPPQPQAPPPPQPQPQppppp 2927

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1386 ------RVPGSTAALLEPTPDASGVIADSPGHWD----------TEVP---TPELLGSVESVLHRLQTAFQEALDLYRML 1446
Cdd:PHA03247 2928 qpqpppPPPPRPQPPLAPTTDPAGAGEPSGAVPQpwlgalvpgrVAVPrfrVPQPAPSREAPASSTPPLTGHSLSRVSSW 3007

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1447 VSSSQLGPEQQQAQTELASTFhWILNQLEASNCMAAANLAPPQT-LPSPDPLSLPTLCPLASPNLQALLE 1515
Cdd:PHA03247 3008 ASSLALHEETDPPPVSLKQTL-WPPDDTEDSDADSLFDSDSERSdLEALDPLPPEPHDPFAHEPDPATPE 3076
WD40 pfam00400
WD domain, G-beta repeat;
706-743 1.88e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 40.02  E-value: 1.88e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 755519504   706 GECVAKMFGHSEIVTGMKFTYDCRHLITVSGDSCVFIW 743
Cdd:pfam00400    1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 146-186 4.27e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 36.52  E-value: 4.27e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 755519504    146 KTQVAEMLGHKYGVACVAFSPNMKHIVSMGYqhDMVLNVWD 186
Cdd:smart00320    2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSD--DGTIKLWD 40
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
365-745 1.28e-36

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 143.90  E-value: 1.28e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  365 ALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSelfHSSFVWNVevypefedqrACLPSGTFL-TCSSDNTIRFWNL 443
Cdd:COG2319    83 SVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTG---HTGAVRSV----------AFSPDGKTLaSGSADGTVRLWDL 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  444 DSAsdtrwqknifsdsllkvvyvendiQHLQDLSHFPDRgsengtpmdmkagVRVMQVSPDGQHLASGDRSGNLRIHELH 523
Cdd:COG2319   150 ATG------------------------KLLRTLTGHSGA-------------VTSVAFSPDGKLLASGSDDGTVRLWDLA 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  524 FMDELIKVEAHDAEVLCLEYSkPEtGvTLLASASRDRLIHVLNVEKNyNLEQTLDDHSSSITAIKFagTRDVQMI-SCGA 602
Cdd:COG2319   193 TGKLLRTLTGHTGAVRSVAFS-PD-G-KLLASGSADGTVRLWDLATG-KLLRTLTGHSGSVRSVAF--SPDGRLLaSGSA 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  603 DKSIYFRSAQqaSDGLHFVRTHHVAektTLYDMDIDITQKYVAVACQDRNVRVYNTVSGKQKKCYKGSQGDEGSllkVHV 682
Cdd:COG2319   267 DGTVRLWDLA--TGELLRTLTGHSG---GVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRS---VAF 338

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755519504  683 DPSGTFLATSCSDKSISLIDFYSGECVAKMFGHSEIVTGMKFTYDCRHLITVSGDSCVFIWHL 745
Cdd:COG2319   339 SPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDL 401
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 365-743 3.03e-27

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 113.58  E-value: 3.03e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  365 ALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSelfHSSFVWNVevypefedqRACLPSGTFLTCSSDNTIRFWNLD 444
Cdd:cd00200    14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG---HTGPVRDV---------AASADGTYLASGSSDKTIRLWDLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  445 SASDTRwqknIFsdsllkvvyvendIQHLQDlshfpdrgsengtpmdmkagVRVMQVSPDGQHLASGDRSGNLRIHELHF 524
Cdd:cd00200    82 TGECVR----TL-------------TGHTSY--------------------VSSVAFSPDGRILSSSSRDKTIKVWDVET 124

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  525 MDELIKVEAHDAEVLCLEYSKPETgvtLLASASRDRLIHVLNVEKNYnLEQTLDDHSSSITAIKFAGTRDvQMISCGADK 604
Cdd:cd00200   125 GKCLTTLRGHTDWVNSVAFSPDGT---FVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGE-KLLSSSSDG 199

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  605 SIyfrsaqqasdglhfvrthhvaekttlydmdiditqkyvavacqdrnvRVYNTVSGKQKKCYkgsQGDEGSLLKVHVDP 684
Cdd:cd00200   200 TI-----------------------------------------------KLWDLSTGKCLGTL---RGHENGVNSVAFSP 229

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 755519504  685 SGTFLATSCSDKSISLIDFYSGECVAKMFGHSEIVTGMKFTYDCRHLITVSGDSCVFIW 743
Cdd:cd00200   230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 493-745 4.60e-27

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 112.81  E-value: 4.60e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  493 KAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELIKVEAHDAEVLCLEYSKpetGVTLLASASRDRLIHVLNVEKNyN 572
Cdd:cd00200     9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA---DGTYLASGSSDKTIRLWDLETG-E 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  573 LEQTLDDHSSSITAIKFAGTRDVqMISCGADKSIyfRSAQQASDGLHFVRTHHvaeKTTLYDMDIDITQKYVAVACQDRN 652
Cdd:cd00200    85 CVRTLTGHTSYVSSVAFSPDGRI-LSSSSRDKTI--KVWDVETGKCLTTLRGH---TDWVNSVAFSPDGTFVASSSQDGT 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  653 VRVYNTVSGKqkkCYKGSQGDEGSLLKVHVDPSGTFLATSCSDKSISLIDFYSGECVAKMFGHSEIVTGMKFTYDCRHLI 732
Cdd:cd00200   159 IKLWDLRTGK---CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA 235

                         250
                  ....*....|...
gi 755519504  733 TVSGDSCVFIWHL 745
Cdd:cd00200   236 SGSEDGTIRVWDL 248
WD40 COG2319
WD40 repeat [General function prediction only];
43-568 1.08e-25

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 111.54  E-value: 1.08e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504   43 LRRRTRLAAAPEDTVQNRVTLEKVLGITAQNSSGLTCDPGTGHVAYLAGCVVVVLNPKENKQQHIFNTTRKSLSALAFSP 122
Cdd:COG2319     9 LAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSP 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  123 DGKYIVTGenGHRPAVRIWDVEEKTQVAEMLGHKYGVACVAFSPNMKHIVSMGYQHdmVLNVWDWKKDIVVAS-NKVSCR 201
Cdd:COG2319    89 DGRLLASA--SADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADG--TVRLWDLATGKLLRTlTGHSGA 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  202 VIALSFSEDSSYFVTVG-NRHVRFWFLEASTEAKVtstvpLVGrsgilgelHNNIFCGVAcgrgrmagntfcVSYSGllc 280
Cdd:COG2319   165 VTSVAFSPDGKLLASGSdDGTVRLWDLATGKLLRT-----LTG--------HTGAVRSVA------------FSPDG--- 216

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  281 qfnekrvldkwinlkvslssclcvsdELIFCGCTDGIVRIFQAHSLLYLTNLPkphylgvdvAHGldssflfhrkaEAVY 360
Cdd:COG2319   217 --------------------------KLLASGSADGTVRLWDLATGKLLRTLT---------GHS-----------GSVR 250

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  361 pdtvALTFDPVHQWLSCVYKDHSIYIWDVKDiDEVSKIWSElfHSSFVWNVevypefedqrACLPSGTFL-TCSSDNTIR 439
Cdd:COG2319   251 ----SVAFSPDGRLLASGSADGTVRLWDLAT-GELLRTLTG--HSGGVNSV----------AFSPDGKLLaSGSDDGTVR 313

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  440 FWNLDSAsdtrwqknifsdsllkvvyvendiQHLQDLSHFPDRgsengtpmdmkagVRVMQVSPDGQHLASGDRSGNLRI 519
Cdd:COG2319   314 LWDLATG------------------------KLLRTLTGHTGA-------------VRSVAFSPDGKTLASGSDDGTVRL 356

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*....
gi 755519504  520 HELHFMDELIKVEAHDAEVLCLEYSKPEtgvTLLASASRDRLIHVLNVE 568
Cdd:COG2319   357 WDLATGELLRTLTGHTGAVTSVAFSPDG---RTLASGSADGTVRLWDLA 402
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 534-743 2.90e-25

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 107.42  E-value: 2.90e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  534 HDAEVLCLEYSkpeTGVTLLASASRDRLIHVLNVEKNyNLEQTLDDHSSSITAIKFAGTRDvQMISCGADKSIYFrsaqQ 613
Cdd:cd00200     8 HTGGVTCVAFS---PDGKLLATGSGDGTIKVWDLETG-ELLRTLKGHTGPVRDVAASADGT-YLASGSSDKTIRL----W 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  614 ASDGLHFVRTHHVAEKTtLYDMDIDITQKYVAVACQDRNVRVYNTVSGKQKKCYKGSQGDegsLLKVHVDPSGTFLATSC 693
Cdd:cd00200    79 DLETGECVRTLTGHTSY-VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW---VNSVAFSPDGTFVASSS 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 755519504  694 SDKSISLIDFYSGECVAKMFGHSEIVTGMKFTYDCRHLITVSGDSCVFIW 743
Cdd:cd00200   155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
WD40 COG2319
WD40 repeat [General function prediction only];
481-751 2.21e-23

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 104.61  E-value: 2.21e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  481 DRGSENGTPMDMKAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELIKVEAHDAEVLCLEYSkPETgvTLLASASRDR 560
Cdd:COG2319    66 AAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFS-PDG--KTLASGSADG 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  561 LIHVLNVEKNyNLEQTLDDHSSSITAIKFA--GTRdvqMISCGADKSIYFRSAQQASDgLHFVRTHhvaeKTTLYDMDID 638
Cdd:COG2319   143 TVRLWDLATG-KLLRTLTGHSGAVTSVAFSpdGKL---LASGSDDGTVRLWDLATGKL-LRTLTGH----TGAVRSVAFS 213

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  639 ITQKYVAVACQDRNVRVYNTVSGKQKKCYKGsqgDEGSLLKVHVDPSGTFLATSCSDKSISLIDFYSGECVAKMFGHSEI 718
Cdd:COG2319   214 PDGKLLASGSADGTVRLWDLATGKLLRTLTG---HSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGG 290

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 755519504  719 VTGMKFTYDCRHLITVSGDSCVFIWHL--GPEITT 751
Cdd:COG2319   291 VNSVAFSPDGKLLASGSDDGTVRLWDLatGKLLRT 325
WD40 COG2319
WD40 repeat [General function prediction only];
94-445 7.72e-23

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 103.07  E-value: 7.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504   94 VVVLNPKENKQQHIFNTTRKSLSALAFSPDGKYIVTGenGHRPAVRIWDVEEKTQVAEMLGHKYGVACVAFSPNMKHIVS 173
Cdd:COG2319   144 VRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASG--SDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLAS 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  174 MGYqhDMVLNVWDWKKDIVVASNKV-SCRVIALSFSEDSSYFVTVG-NRHVRFWflEASTEAKVTStvpLVGRSGilgel 251
Cdd:COG2319   222 GSA--DGTVRLWDLATGKLLRTLTGhSGSVRSVAFSPDGRLLASGSaDGTVRLW--DLATGELLRT---LTGHSG----- 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  252 hnnifcgvacgrgrmagntfcvsysgllcqfnekrvldkWINlkvslssCLCVS--DELIFCGCTDGIVRIFQAHSLLYL 329
Cdd:COG2319   290 ---------------------------------------GVN-------SVAFSpdGKLLASGSDDGTVRLWDLATGKLL 323

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  330 TNLpKPHYLGVDvahgldssflfhrkaeavypdtvALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSelfHSSFVW 409
Cdd:COG2319   324 RTL-TGHTGAVR-----------------------SVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTG---HTGAVT 376

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 755519504  410 NVevypefedqrACLPSGTFL-TCSSDNTIRFWNLDS 445
Cdd:COG2319   377 SV----------AFSPDGRTLaSGSADGTVRLWDLAT 403
WD40 COG2319
WD40 repeat [General function prediction only];
3-519 1.29e-22

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 102.30  E-value: 1.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504    3 AALAAGGYTRSDTIEKLSSVMAGVPARRNQSSPPPAPPLCLRRRTRLAAAPEDTVQNRVTLEKVLGITAQNSSGLTCDPG 82
Cdd:COG2319    11 AASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504   83 TGHVAYLAGCVVVVLNPKENKQQHIFNTTRKSLSALAFSPDGKYIVTGENGHRpaVRIWDVEEKTQVAEMLGHKYGVACV 162
Cdd:COG2319    91 RLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGT--VRLWDLATGKLLRTLTGHSGAVTSV 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  163 AFSPNMKHIVSMGYqhDMVLNVWDWKKDIVVAS-NKVSCRVIALSFSEDSSYFVTVG-NRHVRFWFLEASTEAKVtstvp 240
Cdd:COG2319   169 AFSPDGKLLASGSD--DGTVRLWDLATGKLLRTlTGHTGAVRSVAFSPDGKLLASGSaDGTVRLWDLATGKLLRT----- 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  241 LVGRSGILgelhnnifcgvacgrgrmagntFCVSYSGllcqfnekrvldkwinlkvslssclcvSDELIFCGCTDGIVRI 320
Cdd:COG2319   242 LTGHSGSV----------------------RSVAFSP---------------------------DGRLLASGSADGTVRL 272

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  321 FqahsllyltnlpkphylgvDVAHGLDSSFLFHRKAeAVYpdtvALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWS 400
Cdd:COG2319   273 W-------------------DLATGELLRTLTGHSG-GVN----SVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTG 328

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  401 elfHSSFVWNVevypefedqrACLPSGTFL-TCSSDNTIRFWNLdsasDTRWQKNIFSdsllkvvyvendiQHlqdlshf 479
Cdd:COG2319   329 ---HTGAVRSV----------AFSPDGKTLaSGSDDGTVRLWDL----ATGELLRTLT-------------GH------- 371

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|
gi 755519504  480 pdrgsengtpmdmKAGVRVMQVSPDGQHLASGDRSGNLRI 519
Cdd:COG2319   372 -------------TGAVTSVAFSPDGRTLASGSADGTVRL 398
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 112-442 1.69e-22

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 99.33  E-value: 1.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  112 RKSLSALAFSPDGKYIVTG-ENGHrpaVRIWDVEEKTQVAEMLGHKYGVACVAFSPNMKHIVSMGYqhDMVLNVWDWKKD 190
Cdd:cd00200     9 TGGVTCVAFSPDGKLLATGsGDGT---IKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS--DKTIRLWDLETG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  191 IVVAS-NKVSCRVIALSFSEDSSYFVTVG-NRHVRFWFLEASTEAKVTSTvplvgrsgilgelHNN-IFCGVACGRGRMA 267
Cdd:cd00200    84 ECVRTlTGHTSYVSSVAFSPDGRILSSSSrDKTIKVWDVETGKCLTTLRG-------------HTDwVNSVAFSPDGTFV 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  268 gntFCVSYSGL-----LCQFNEKRVL---DKWINlkvslssCLCVSD--ELIFCGCTDGIVRIFqahsllyltNLPKPHY 337
Cdd:cd00200   151 ---ASSSQDGTiklwdLRTGKCVATLtghTGEVN-------SVAFSPdgEKLLSSSSDGTIKLW---------DLSTGKC 211

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  338 LGVDVAHGldssflfhrkaEAVYpdtvALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSelfHSSFVWNVevypef 417
Cdd:cd00200   212 LGTLRGHE-----------NGVN----SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG---HTNSVTSL------ 267

                         330       340
                  ....*....|....*....|....*.
gi 755519504  418 edqrACLPSGTFL-TCSSDNTIRFWN 442
Cdd:cd00200   268 ----AWSPDGKRLaSGSADGTIRIWD 289
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 300-606 1.14e-18

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 88.16  E-value: 1.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  300 SCLCVSD--ELIFCGCTDGIVRIFQAHSLLYLTNLpKPHYLGV-DVAHGLDSSFLF------------------------ 352
Cdd:cd00200    13 TCVAFSPdgKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVrDVAASADGTYLAsgssdktirlwdletgecvrtltg 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  353 HRKAeaVYpdtvALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIwseLFHSSFVWNVEVypefedqracLPSGTFLTC 432
Cdd:cd00200    92 HTSY--VS----SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL---RGHTDWVNSVAF----------SPDGTFVAS 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  433 SS-DNTIRFWNLDSasdtrwqknifsdsllkvvyvendiqhlqdlshfpdrGSENGTPMDMKAGVRVMQVSPDGQHLASG 511
Cdd:cd00200   153 SSqDGTIKLWDLRT-------------------------------------GKCVATLTGHTGEVNSVAFSPDGEKLLSS 195

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  512 DRSGNLRIHELHfMDELIKV-EAHDAEVLCLEYSKPEtgvTLLASASRDRLIHVLNVEKNYNLeQTLDDHSSSITAIKFA 590
Cdd:cd00200   196 SSDGTIKLWDLS-TGKCLGTlRGHENGVNSVAFSPDG---YLLASGSEDGTIRVWDLRTGECV-QTLSGHTNSVTSLAWS 270

                         330
                  ....*....|....*.
gi 755519504  591 GTRDVqMISCGADKSI 606
Cdd:cd00200   271 PDGKR-LASGSADGTI 285
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 154-564 1.03e-16

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 82.38  E-value: 1.03e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  154 GHKYGVACVAFSPNMKHIVSMGYqhDMVLNVWDWKKDIVVASNKV-SCRVIALSFSEDSSYFVTVG-NRHVRFWFLEASt 231
Cdd:cd00200     7 GHTGGVTCVAFSPDGKLLATGSG--DGTIKVWDLETGELLRTLKGhTGPVRDVAASADGTYLASGSsDKTIRLWDLETG- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  232 eaKVTSTvpLVGrsgilgelHNnifcgvacgrgrmaGNTFCVSYSgllcqfnekrvldkwinlkvslssclcVSDELIFC 311
Cdd:cd00200    84 --ECVRT--LTG--------HT--------------SYVSSVAFS---------------------------PDGRILSS 110

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  312 GCTDGIVRIFQAHSLLYLTnlpkphylgvdvahgldsSFLFHRKaeavypDTVALTFDPVHQWLSCVYKDHSIYIWDVKD 391
Cdd:cd00200   111 SSRDKTIKVWDVETGKCLT------------------TLRGHTD------WVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  392 IdevSKIWSELFHSSFVWNVEVYPEfedqraclpSGTFLTCSSDNTIRFWNLDSAsdtrwqknifsdsllkvvyvendiQ 471
Cdd:cd00200   167 G---KCVATLTGHTGEVNSVAFSPD---------GEKLLSSSSDGTIKLWDLSTG------------------------K 210

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  472 HLQDLshfpdRGSENgtpmdmkaGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELIKVEAHDAEVLCLEYSkPETGVt 551
Cdd:cd00200   211 CLGTL-----RGHEN--------GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS-PDGKR- 275

                         410
                  ....*....|...
gi 755519504  552 lLASASRDRLIHV 564
Cdd:cd00200   276 -LASGSADGTIRI 287
WD40 COG2319
WD40 repeat [General function prediction only];
481-751 1.05e-14

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 78.03  E-value: 1.05e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  481 DRGSENGTPMDMKAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELIKVEAHDAEVLCLEYSkpeTGVTLLASASRDR 560
Cdd:COG2319    24 ALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFS---PDGRLLASASADG 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  561 LIHVLNVEKNYNLeQTLDDHSSSITAIKFAgtrdvqmiscgadksiyfrsaqqaSDGlhfvrthhvaekttlydmdidit 640
Cdd:COG2319   101 TVRLWDLATGLLL-RTLTGHTGAVRSVAFS------------------------PDG----------------------- 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  641 qKYVAVACQDRNVRVYNTVSGKQKKCYKGSQGDEGSllkVHVDPSGTFLATSCSDKSISLIDFYSGECVAKMFGHSEIVT 720
Cdd:COG2319   133 -KTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTS---VAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVR 208

                         250       260       270
                  ....*....|....*....|....*....|...
gi 755519504  721 GMKFTYDCRHLITVSGDSCVFIWHL--GPEITT 751
Cdd:COG2319   209 SVAFSPDGKLLASGSADGTVRLWDLatGKLLRT 241
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 633-756 1.46e-12

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 70.06  E-value: 1.46e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504  633 YDMDIDITQKYVAVACQDRNVRVYNTVSGKQKKCYKGSqgdEGSLLKVHVDPSGTFLATSCSDKSISLIDFYSGECVAKM 712
Cdd:cd00200    13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH---TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 755519504  713 FGHSEIVTGMKFTYDCRHLITVSGDSCVFIWHL-GPEITTCMKQH 756
Cdd:cd00200    90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVeTGKCLTTLRGH 134
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 88-225 1.53e-12

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 70.06  E-value: 1.53e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504   88 YLAGC----VVVVLNPKENKQQHIFNTTRKSLSALAFSPDGKYIVTGENGHrpAVRIWDVEEKTQVAEMLGHKYGVACVA 163
Cdd:cd00200   107 ILSSSsrdkTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG--TIKLWDLRTGKCVATLTGHTGEVNSVA 184

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755519504  164 FSPNMKHIVSMGyqHDMVLNVWDWKKDIVVASNKVSC-RVIALSFSEDSSYFVTVG-NRHVRFW 225
Cdd:cd00200   185 FSPDGEKLLSSS--SDGTIKLWDLSTGKCLGTLRGHEnGVNSVAFSPDGYLLASGSeDGTIRVW 246
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 705-744 2.89e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 42.68  E-value: 2.89e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 755519504    705 SGECVAKMFGHSEIVTGMKFTYDCRHLITVSGDSCVFIWH 744
Cdd:smart00320    1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1009-1515 1.33e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1009 AAAHSSAPQTDP-----GPHLTMTAGKPEYPSteELSQPELPGLGNGSLPQTPEQEKFLRHhfETLTDAPTEGPMGIFLE 1083
Cdd:PHA03247 2562 AAPDRSVPPPRPaprpsEPAVTSRARRPDAPP--QSARPRAPVDDRGDPRGPAPPSPLPPD--THAPDPPPPSPSPAANE 2637

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1084 LFHGSLGDIKISETEDYFFNP---RLSISTQFLSRLQKTSrCPPRLPLHLMKSPEAQPVGQGGNQPKAGPLRAGTGYMSS 1160
Cdd:PHA03247 2638 PDPHPPPTVPPPERPRDDPAPgrvSRPRRARRLGRAAQAS-SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALV 2716

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1161 DGTNVLSG-QKAEETQEALSLL-VPPLSGLTSCVP----PSSVPPTDRKPPTPT--SVLTTGREQSISAPSSCSYLESTT 1232
Cdd:PHA03247 2717 SATPLPPGpAAARQASPALPAApAPPAVPAGPATPggpaRPARPPTTAGPPAPAppAAPAAGPPRRLTRPAVASLSESRE 2796

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1233 SSHAKTTRSISLGDSEGPVTAELPQSLHKPLSPGqelqaiPTTVALTSSIKDHEPAPlswgnhearASLKLTLSSVCEQL 1312
Cdd:PHA03247 2797 SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP------PTSAQPTAPPPPPGPPP---------PSLPLGGSVAPGGD 2861

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1313 LS--PPPQEPPITHVWSQEPvdvppsmavTVASFCAPsPVDMSTlglhSSMFLPKTSASGPLTPPAHLQLLETRS----- 1385
Cdd:PHA03247 2862 VRrrPPSRSPAAKPAAPARP---------PVRRLARP-AVSRST----ESFALPPDQPERPPQPQAPPPPQPQPQppppp 2927

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1386 ------RVPGSTAALLEPTPDASGVIADSPGHWD----------TEVP---TPELLGSVESVLHRLQTAFQEALDLYRML 1446
Cdd:PHA03247 2928 qpqpppPPPPRPQPPLAPTTDPAGAGEPSGAVPQpwlgalvpgrVAVPrfrVPQPAPSREAPASSTPPLTGHSLSRVSSW 3007

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504 1447 VSSSQLGPEQQQAQTELASTFhWILNQLEASNCMAAANLAPPQT-LPSPDPLSLPTLCPLASPNLQALLE 1515
Cdd:PHA03247 3008 ASSLALHEETDPPPVSLKQTL-WPPDDTEDSDADSLFDSDSERSdLEALDPLPPEPHDPFAHEPDPATPE 3076
WD40 pfam00400
WD domain, G-beta repeat;
706-743 1.88e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 40.02  E-value: 1.88e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 755519504   706 GECVAKMFGHSEIVTGMKFTYDCRHLITVSGDSCVFIW 743
Cdd:pfam00400    1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
ANAPC4_WD40 pfam12894
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ...
 635-727 3.25e-04

Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,


Pssm-ID: 403945 [Multi-domain]  Cd Length: 91  Bit Score: 41.11  E-value: 3.25e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519504   635 MDIditqkyVAVACQDRNVRVYNTvSGKqkKCYKGSQGDEGSLLK-VHVDPSGTFLATSCSDKSISLIDFYSGECVAKMF 713
Cdd:pfam12894    7 MDL------IALATEDGELLLHRL-NWQ--RVWTLSPDKEDLEVTsLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFS 77

                           90
                   ....*....|....
gi 755519504   714 GHSEIVTGMKFTYD 727
Cdd:pfam12894   78 AGSDLITCLGWGEN 91
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 118-171 4.19e-03

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 41.95  E-value: 4.19e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 755519504  118 LAFSPDGKYIV---TGENGHRpAVRIWDVEEK--TQVAEmlgHKYGVACVAFSPNMKHI 171
Cdd:COG4946   437 LAWSPDSKWLAyskPGPNQLS-QIFLYDVETGktVQLTD---GRYDDGSPAFSPDGKYL 491
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 146-186 4.27e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 36.52  E-value: 4.27e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 755519504    146 KTQVAEMLGHKYGVACVAFSPNMKHIVSMGYqhDMVLNVWD 186
Cdd:smart00320    2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSD--DGTIKLWD 40
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 714-762 6.12e-03

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 40.40  E-value: 6.12e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 755519504  714 GHSEIVTGMKFTYDCRHLITVSGDSCVFIWHL-GPEITTCMKQHLLEINH 762
Cdd:cd00200     7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLeTGELLRTLKGHTGPVRD 56
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 103-142 9.22e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 35.37  E-value: 9.22e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 755519504    103 KQQHIFNTTRKSLSALAFSPDGKYIVTG-ENGHrpaVRIWD 142
Cdd:smart00320    3 ELLKTLKGHTGPVTSVAFSPDGKYLASGsDDGT---IKLWD 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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