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Conserved domains on  [gi|767918155|ref|XP_011509486|]
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low-density lipoprotein receptor-related protein 2 isoform X3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2996-3030 2.09e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 61.07  E-value: 2.09e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 2996 CTESEFRCVNQQCIPSRWICDHYNDCGDNSDERDC 3030
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2956-2991 5.94e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 59.53  E-value: 5.94e-11
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 767918155 2956 CHPvGDFRCKNHHCIPLRWQCDGQNDCGDNSDEENC 2991
Cdd:cd00112     1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2142-2174 7.75e-11

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 59.18  E-value: 7.75e-11
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2142 TCLADEFKCDGGRCIPSEWICDGDNDCGDMSDE 2174
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
738-780 1.37e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.77  E-value: 1.37e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155    738 RVVFDSSIILTETIAIDWVGRNLYWTDYALETIEVSKIDGSHR 780
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2871-2903 1.51e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 58.41  E-value: 1.51e-10
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2871 TCRPGQFRCANGRCIPQAWKCDVDNDCGDHSDE 2903
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
508-542 1.76e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.37  E-value: 1.76e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  508 CPSSYFHCDNGNCIHRAWLCDRDNDCGDMSDEKDC 542
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
346-380 1.88e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.37  E-value: 1.88e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  346 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC 380
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
386-420 2.01e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 57.99  E-value: 2.01e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  386 CQPSQFNCPNHRCIDLSFVCDGDKDCVDGSDEVGC 420
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2595-2636 2.40e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.00  E-value: 2.40e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   2595 VIISTKLEWPNGITIDYTNDLLYWADAHLGYIEYSDLEGHHR 2636
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
101-141 4.90e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 4.90e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 767918155    101 VINTTLGWPNGLAIDWAASRLYWVDAYFDKIEHSTFDGLDR 141
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2230-2264 5.20e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.83  E-value: 5.20e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 2230 CSENEFTCGYGLCIPKIFRCDRHNDCGDYSDERGC 2264
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
782-826 5.56e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 5.56e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 767918155    782 VLISKNLTNPRGLALDPRmnEHLLFWSDWGhHPRIERASMDGSMR 826
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWI--EGRLYWTDWG-LDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3378-3413 7.17e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.84  E-value: 7.17e-10
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 767918155   3378 VMQPDGIAVDWVGRHIYWSDVKNKRIEVAKLDGRYR 3413
Cdd:smart00135    8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
304-338 1.03e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.06  E-value: 1.03e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  304 CSSSAFTCGHGECIPAHWRCDKRNDCVDGSDEHNC 338
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3434-3475 1.35e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


:

Pssm-ID: 459654  Cd Length: 42  Bit Score: 56.01  E-value: 1.35e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  3434 GLMFWTDWGKEPKIESAWMNGEDRNILVFEDLGWPTGLSIDY 3475
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2268-2300 1.40e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.72  E-value: 1.40e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2268 TCQQNQFTCQNGRCISKTFVCDEDNDCGDGSDE 2300
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2312-2346 1.82e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.29  E-value: 1.82e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 2312 CPPHEFKCDNGRCIEMMKLCNHLDDCLDNSDEKGC 2346
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1978-2012 2.37e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.91  E-value: 2.37e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 1978 CSPTAFTCANGRCVQYSYRCDYYNDCGDGSDEAGC 2012
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1936-1968 2.56e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.95  E-value: 2.56e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   1936 RCGASSFTCSNGRCISEEWKCDNDNDCGDGSDE 1968
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3459-3501 2.69e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 55.30  E-value: 2.69e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   3459 ILVFEDLGWPTGLSIDYLNnDRIYWSDFKEDVIETIKYDGTDR 3501
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIE-GRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2570-2611 2.73e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


:

Pssm-ID: 459654  Cd Length: 42  Bit Score: 55.24  E-value: 2.73e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  2570 GYLYWADWGHRAYIGRVGMDGTNKSVIISTKLEWPNGITIDY 2611
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3165-3199 4.05e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.52  E-value: 4.05e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 3165 CTEYEYKCGNGHCIPHDNVCDDADDCGDWSDELGC 3199
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2831-2863 5.43e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.13  E-value: 5.43e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2831 CDSNEWQCANKRCIPESWQCDTFNDCEDNSDED 2863
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2100-2132 8.37e-09

Low-density lipoprotein receptor domain class A;


:

Pssm-ID: 395011  Cd Length: 37  Bit Score: 53.41  E-value: 8.37e-09
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767918155  2100 TCSSSEFQCASGRCIPQHWYCDQETDCFDASDE 2132
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
263-297 9.31e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 53.36  E-value: 9.31e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  263 CGLFSFPCKNGRCVPNYYLCDGVDDCHDNSDEQLC 297
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1782-1822 1.26e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 53.37  E-value: 1.26e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 767918155   1782 IVNSSLVMPSGLTLDYEEDLLYWVDASLQRIERSTLTGVDR 1822
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2749-2781 1.49e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.64  E-value: 1.49e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2749 CSSTQFLCANNeKCIPIWWKCDGQKDCSDGSDE 2781
Cdd:smart00192    2 CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3035-3069 4.20e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 51.44  E-value: 4.20e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 3035 CHPEYFQCTSGHCVHSELKCDGSADCLDASDEADC 3069
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2499-2541 5.58e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 51.45  E-value: 5.58e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   2499 ETIINHRLPAAESLAVDWVSRKLYWLDARLDGLFVSDLNGGHR 2541
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
13-55 6.53e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 51.06  E-value: 6.53e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155     13 EILAANRVENVESLAFDWISKNLYWTDSHYKSISVMRLADKTR 55
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1120-1165 8.31e-08

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


:

Pssm-ID: 459654  Cd Length: 42  Bit Score: 51.01  E-value: 8.31e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 767918155  1120 GKLYWsdqgTDSGVPAKIASANMDGTSVKTLFTGNLEHLECVTLDI 1165
Cdd:pfam00058    1 GRLYW----TDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1464-1504 1.14e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.68  E-value: 1.14e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 767918155   1464 VLVSEGIVTPRGLAVDRSDGYVYWVDDSLDIIARIRINGEN 1504
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1328-1489 1.15e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


:

Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 55.86  E-value: 1.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1328 AGQGRNALHVDVDVSSGFIYWCDfsssvASDNAIRRIKPDGSSLMNIVTHGigeNGVRGIAVDWVAGNLYFTNAFVSEtl 1407
Cdd:COG3391    64 AAAVADADGADAGADGRRLYVAN-----SGSGRVSVIDLATGKVVATIPVG---GGPRGLAVDPDGGRLYVADSGNGR-- 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1408 ieVLRINTTYRRVLLKVTV-DMPRHIVVDPKNRYLFWADYGQrPKIER--SFLDCTNRTVL--VSEGiVTPRGLAVDRSD 1482
Cdd:COG3391   134 --VSVIDTATGKVVATIPVgAGPHGIAVDPDGKRLYVANSGS-NTVSVivSVIDTATGKVVatIPVG-GGPVGVAVSPDG 209

                  ....*..
gi 767918155 1483 GYVYWVD 1489
Cdd:COG3391   210 RRLYVAN 216
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
75-116 1.42e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


:

Pssm-ID: 459654  Cd Length: 42  Bit Score: 50.24  E-value: 1.42e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155    75 GYLFFTDWFRPAKIMRAWSDGSHLLPVINTTLGWPNGLAIDW 116
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
424-459 2.07e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 2.07e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 767918155  424 CTASQFKCASGdKCIGVTNRCDGVFDCSDNSDEAGC 459
Cdd:cd00112     1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2185-2225 2.62e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.13  E-value: 2.62e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 767918155 2185 CSDSEFLCVNdrppdRRCIPQSWVCDGDVDCTDGYDEnQNC 2225
Cdd:cd00112     1 CPPNEFRCAN-----GRCIPSSWVCDGEDDCGDGSDE-ENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
467-501 4.54e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.74  E-value: 4.54e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  467 CHSDEFQCQeDGICIPNFWECDGHPDCLYGSDEHN 501
Cdd:cd00112     1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEEN 34
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1696-1737 4.82e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.75  E-value: 4.82e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   1696 TVIASGIGTADGIAFDWITRRIYYSDYLNQMINSMAEDGSNR 1737
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2919-2951 5.79e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.36  E-value: 5.79e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2919 TEFSCKtNYRCIPKWAVCNGVDDCRDNSDEQGC 2951
Cdd:cd00112     4 NEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2456-2497 5.81e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.37  E-value: 5.81e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   2456 YSLILEGLDNVVALDFDRVEKRLYWIDTQRQVIERMFLNKTN 2497
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3122-3152 8.50e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 47.63  E-value: 8.50e-07
                            10        20        30
                    ....*....|....*....|....*....|.
gi 767918155   3122 SPNRFRCDNNRCIYSHEVCNGVDDCGDGTDE 3152
Cdd:smart00192    3 PPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
828-869 8.76e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 47.98  E-value: 8.76e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155    828 VIVQDKIFWPCGLTIDYPNRLLYFMDSYLDYMDFCDYNGHHR 869
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_b super family cl44468
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2519-2567 1.53e-06

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


The actual alignment was detected with superfamily member pfam00058:

Pssm-ID: 459654  Cd Length: 42  Bit Score: 47.15  E-value: 1.53e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 767918155  2519 RKLYWLDARLD-GLFVSDLNGGHRRMLAQHcvdanntfCFDNPRGLALHP 2567
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTD--------DLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1737-1779 1.55e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 47.21  E-value: 1.55e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 767918155   1737 RTVIAR-VPKPRAIVLDPCQGYLYWADWDTHaKIERATLGGNFR 1779
Cdd:smart00135    1 RTLLSSgLGHPNGLAVDWIEGRLYWTDWGLD-VIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1148-1190 1.78e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 47.21  E-value: 1.78e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   1148 KTLFTGNLEHLECVTLDIEEQKLYWAVTGRGVIERGNVDGTDR 1190
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
590-625 2.19e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.85  E-value: 2.19e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155   590 CSDFNGGCTHECVQEPFGAKCLCPLGFLLANDSKTC 625
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1259-1295 2.63e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.47  E-value: 2.63e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 767918155  1259 CSNNMNACQQICLPVPGGlFSCACATGFKLNPDNRSC 1295
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGG-YTCSCPEGYELQDDGRTC 36
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2021-2054 2.81e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 46.43  E-value: 2.81e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 767918155 2021 TEFMCNNRRCIPREFICNGVDNCHDNntSDEKNC 2054
Cdd:cd00112     4 NEFRCANGRCIPSSWVCDGEDDCGDG--SDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2058-2091 3.77e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 46.09  E-value: 3.77e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 767918155   2058 TCQSGYTKCHNSNiCIPRVYLCDGDNDCGDNSDE 2091
Cdd:smart00192    1 TCPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2358-2387 4.79e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 45.70  E-value: 4.79e-06
                           10        20        30
                   ....*....|....*....|....*....|
gi 767918155  2358 GCDHNCTDTLTSFYCSCRPGYKLMSDKRTC 2387
Cdd:pfam14670    7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
Vgb super family cl26743
Streptogramin lyase [Defense mechanisms];
1473-1781 7.60e-06

Streptogramin lyase [Defense mechanisms];


The actual alignment was detected with superfamily member COG4257:

Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 50.79  E-value: 7.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1473 PRGLAVDRsDGYVYWVDDSLDIIARIRINGENSEVIRYGSRyPTPYGITVFENSIIWV-DRNLKKIFQaskepenteppt 1551
Cdd:COG4257    19 PRDVAVDP-DGAVWFTDQGGGRIGRLDPATGEFTEYPLGGG-SGPHGIAVDPDGNLWFtDNGNNRIGR------------ 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1552 virdninwlrdVTIFDKQVQprspaevnnnpclennggcshlCFALPGLHTPKCDCAFGtlqSDGKncaistenfLIFAL 1631
Cdd:COG4257    85 -----------IDPKTGEIT----------------------TFALPGGGSNPHGIAFD---PDGN---------LWFTD 119
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1632 SNSLRSLHLDPENHSppFQTINVERTV---MSLDYDSvSDRIYFTQNLASGVGQISYATLSSGIHT-PTVIA--SGIG-T 1704
Cdd:COG4257   120 QGGNRIGRLDPATGE--VTEFPLPTGGagpYGIAVDP-DGNLWVTDFGANAIGRIDPDTGTLTEYAlPTPGAgpRGLAvD 196
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1705 ADGiafdwitrRIYYSDYLN---QMINsmAEDGSNRTVI--ARVPKPRAIVLDPcQGYLYWADWDTH--AKIERATLGGN 1777
Cdd:COG4257   197 PDG--------NLWVADTGSgriGRFD--PKTGTVTEYPlpGGGARPYGVAVDG-DGRVWFAESGANriVRFDPDTELTE 265

                  ....
gi 767918155 1778 FRVP 1781
Cdd:COG4257   266 YVLP 269
EGF_CA smart00179
Calcium-binding EGF-like domain;
3244-3284 8.00e-06

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 45.32  E-value: 8.00e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   3244 DINECEQFGTCPQH--CRNTKGSYECVCADGFTSmsdrpGKRC 3284
Cdd:smart00179    1 DIDECASGNPCQNGgtCVNTVGSYRCECPPGYTD-----GRNC 38
vWFA super family cl00057
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
2384-2427 1.74e-05

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


The actual alignment was detected with superfamily member cd01475:

Pssm-ID: 469594 [Multi-domain]  Cd Length: 224  Bit Score: 48.92  E-value: 1.74e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 767918155 2384 KRTCVDIDECTEMPFVCSQKCENVIGSYICKCAPGYLREPDGKT 2427
Cdd:cd01475   181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
EGF_CA smart00179
Calcium-binding EGF-like domain;
627-666 3.22e-05

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 43.39  E-value: 3.22e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155    627 DIDECDILGSCSQH--CYNMRGSFRCSCDTGYmleSDGRTCK 666
Cdd:smart00179    1 DIDECASGNPCQNGgtCVNTVGSYRCECPPGY---TDGRNCE 39
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2790-2821 9.98e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 41.85  E-value: 9.98e-05
                            10        20        30
                    ....*....|....*....|....*....|..
gi 767918155   2790 CRLGQFQCSDGNCTSPQTLCNAHQNCPDGSDE 2821
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2645-2678 2.04e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 41.43  E-value: 2.04e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 767918155   2645 PHPFAITIFEDTIYWTDWNTRTVEKgNKYDGSNR 2678
Cdd:smart00135   11 PNGLAVDWIEGRLYWTDWGLDVIEV-ANLDGTNR 43
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2706-2735 2.84e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 40.69  E-value: 2.84e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 767918155  2706 CGTNNGGCSHLCLIKPGgkGFTCECPDDFR 2735
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG--GYTCSCPEGYE 28
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
548-581 6.02e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 39.92  E-value: 6.02e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 767918155    548 RCPSWQWQClGHNICVNLSVVCDGIFDCPNGTDE 581
Cdd:smart00192    1 TCPPGEFQC-DNGRCIPSSWVCDGVDDCGDGSDE 33
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
218-250 6.62e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 39.53  E-value: 6.62e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767918155   218 NGDCSHFCFPVPNfQRVCGCPYGMRLASNHLTC 250
Cdd:pfam14670    5 NGGCSHLCLNTPG-GYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1892-1929 9.52e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 39.15  E-value: 9.52e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 767918155  1892 CEQFNGGCSHICAPGPNGAECQCPHEgnWYLANNRKHC 1929
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEG--YELQDDGRTC 36
YvrE super family cl34598
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
1024-1188 9.56e-04

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


The actual alignment was detected with superfamily member COG3386:

Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 44.11  E-value: 9.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1024 DAEQYIYWVENP-GEIHRVKTDGTNRTVFASISmvGPSMNLALD-----WI---SRNLYSTNPRTQSIEVLTLHGDIRYR 1094
Cdd:COG3386    16 DPDGRLYWVDIPgGRIHRYDPDGGAVEVFAEPS--GRPNGLAFDpdgrlLVadhGRGLVRFDPADGEVTVLADEYGKPLN 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1095 ktlIANDGtalgvgfpigiTVDPArGKLYWSDQGTDSGvPAKIASANMDGtSVKTLFTG----N-LehleCVTLDieEQK 1169
Cdd:COG3386    94 ---RPNDG-----------VVDPD-GRLYFTDMGEYLP-TGALYRVDPDG-SLRVLADGltfpNgI----AFSPD--GRT 150
                         170
                  ....*....|....*....
gi 767918155 1170 LYWAVTGRGVIERGNVDGT 1188
Cdd:COG3386   151 LYVADTGAGRIYRFDLDAD 169
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
698-737 2.63e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 38.35  E-value: 2.63e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 767918155    698 LVENGSYIVAVDFDSISGRIFWSDATQGKTWSAFQNGTDR 737
Cdd:smart00135    4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
3575-3593 4.88e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 37.22  E-value: 4.88e-03
                           10
                   ....*....|....*....
gi 767918155  3575 CSHLCLLRPGGYSCACPQG 3593
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEG 26
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1830-1862 5.18e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 37.20  E-value: 5.18e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   1830 VHAFGLTLYGQYIYWTDLYTQRIYRANkYDGSG 1862
Cdd:smart00135   11 PNGLAVDWIEGRLYWTDWGLDVIEVAN-LDGTN 42
 
Name Accession Description Interval E-value
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2996-3030 2.09e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 61.07  E-value: 2.09e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 2996 CTESEFRCVNQQCIPSRWICDHYNDCGDNSDERDC 3030
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2956-2991 5.94e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 59.53  E-value: 5.94e-11
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 767918155 2956 CHPvGDFRCKNHHCIPLRWQCDGQNDCGDNSDEENC 2991
Cdd:cd00112     1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2142-2174 7.75e-11

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 59.18  E-value: 7.75e-11
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2142 TCLADEFKCDGGRCIPSEWICDGDNDCGDMSDE 2174
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
738-780 1.37e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.77  E-value: 1.37e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155    738 RVVFDSSIILTETIAIDWVGRNLYWTDYALETIEVSKIDGSHR 780
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2871-2903 1.51e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 58.41  E-value: 1.51e-10
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2871 TCRPGQFRCANGRCIPQAWKCDVDNDCGDHSDE 2903
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
508-542 1.76e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.37  E-value: 1.76e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  508 CPSSYFHCDNGNCIHRAWLCDRDNDCGDMSDEKDC 542
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
346-380 1.88e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.37  E-value: 1.88e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  346 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC 380
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
386-420 2.01e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 57.99  E-value: 2.01e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  386 CQPSQFNCPNHRCIDLSFVCDGDKDCVDGSDEVGC 420
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2595-2636 2.40e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.00  E-value: 2.40e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   2595 VIISTKLEWPNGITIDYTNDLLYWADAHLGYIEYSDLEGHHR 2636
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2872-2903 3.25e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 57.60  E-value: 3.25e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 767918155 2872 CRPGQFRCANGRCIPQAWKCDVDNDCGDHSDE 2903
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2143-2175 3.52e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 57.60  E-value: 3.52e-10
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2143 CLADEFKCDGGRCIPSEWICDGDNDCGDMSDED 2175
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
101-141 4.90e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 4.90e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 767918155    101 VINTTLGWPNGLAIDWAASRLYWVDAYFDKIEHSTFDGLDR 141
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2230-2264 5.20e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.83  E-value: 5.20e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 2230 CSENEFTCGYGLCIPKIFRCDRHNDCGDYSDERGC 2264
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2955-2988 5.47e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.87  E-value: 5.47e-10
                            10        20        30
                    ....*....|....*....|....*....|....
gi 767918155   2955 TCHPvGDFRCKNHHCIPLRWQCDGQNDCGDNSDE 2988
Cdd:smart00192    1 TCPP-GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
782-826 5.56e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 5.56e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 767918155    782 VLISKNLTNPRGLALDPRmnEHLLFWSDWGhHPRIERASMDGSMR 826
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWI--EGRLYWTDWG-LDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2995-3027 6.46e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.49  E-value: 6.46e-10
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2995 ECTESEFRCVNQQCIPSRWICDHYNDCGDNSDE 3027
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3378-3413 7.17e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.84  E-value: 7.17e-10
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 767918155   3378 VMQPDGIAVDWVGRHIYWSDVKNKRIEVAKLDGRYR 3413
Cdd:smart00135    8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
304-338 1.03e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.06  E-value: 1.03e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  304 CSSSAFTCGHGECIPAHWRCDKRNDCVDGSDEHNC 338
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2141-2174 1.17e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 56.10  E-value: 1.17e-09
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767918155  2141 RTCLADEFKCDGGRCIPSEWICDGDNDCGDMSDE 2174
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3434-3475 1.35e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 56.01  E-value: 1.35e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  3434 GLMFWTDWGKEPKIESAWMNGEDRNILVFEDLGWPTGLSIDY 3475
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2268-2300 1.40e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.72  E-value: 1.40e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2268 TCQQNQFTCQNGRCISKTFVCDEDNDCGDGSDE 2300
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
506-542 1.50e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 55.72  E-value: 1.50e-09
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 767918155   506 KTCPSSYFHCDNGNCIHRAWLCDRDNDCGDMSDEKDC 542
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
507-539 1.60e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 1.60e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    507 TCPSSYFHCDNGNCIHRAWLCDRDNDCGDMSDE 539
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2269-2301 1.63e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.68  E-value: 1.63e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2269 CQQNQFTCQNGRCISKTFVCDEDNDCGDGSDEL 2301
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2312-2346 1.82e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.29  E-value: 1.82e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 2312 CPPHEFKCDNGRCIEMMKLCNHLDDCLDNSDEKGC 2346
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
385-417 2.19e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.95  E-value: 2.19e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    385 TCQPSQFNCPNHRCIDLSFVCDGDKDCVDGSDE 417
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1978-2012 2.37e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.91  E-value: 2.37e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 1978 CSPTAFTCANGRCVQYSYRCDYYNDCGDGSDEAGC 2012
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1936-1968 2.56e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.95  E-value: 2.56e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   1936 RCGASSFTCSNGRCISEEWKCDNDNDCGDGSDE 1968
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3459-3501 2.69e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 55.30  E-value: 2.69e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   3459 ILVFEDLGWPTGLSIDYLNnDRIYWSDFKEDVIETIKYDGTDR 3501
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIE-GRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1937-1969 2.69e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.91  E-value: 2.69e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 1937 CGASSFTCSNGRCISEEWKCDNDNDCGDGSDEM 1969
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2570-2611 2.73e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 55.24  E-value: 2.73e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  2570 GYLYWADWGHRAYIGRVGMDGTNKSVIISTKLEWPNGITIDY 2611
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3165-3199 4.05e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.52  E-value: 4.05e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 3165 CTEYEYKCGNGHCIPHDNVCDDADDCGDWSDELGC 3199
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
385-420 4.39e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 54.56  E-value: 4.39e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155   385 TCQPSQFNCPNHRCIDLSFVCDGDKDCVDGSDEVGC 420
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2831-2863 5.43e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.13  E-value: 5.43e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2831 CDSNEWQCANKRCIPESWQCDTFNDCEDNSDED 2863
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
303-338 6.06e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 53.79  E-value: 6.06e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155   303 TCSSSAFTCGHGECIPAHWRCDKRNDCVDGSDEHNC 338
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2831-2862 6.12e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.79  E-value: 6.12e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 767918155   2831 CDSNEWQCANKRCIPESWQCDTFNDCEDNSDE 2862
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
303-335 7.67e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.41  E-value: 7.67e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    303 TCSSSAFTCGHGECIPAHWRCDKRNDCVDGSDE 335
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2100-2132 8.37e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 53.41  E-value: 8.37e-09
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767918155  2100 TCSSSEFQCASGRCIPQHWYCDQETDCFDASDE 2132
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2100-2132 9.23e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.41  E-value: 9.23e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2100 TCSSSEFQCASGRCIPQHWYCDQETDCFDASDE 2132
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
263-297 9.31e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 53.36  E-value: 9.31e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  263 CGLFSFPCKNGRCVPNYYLCDGVDDCHDNSDEQLC 297
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2954-2991 1.06e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 53.41  E-value: 1.06e-08
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 767918155  2954 RTCHPvGDFRCKNHHCIPLRWQCDGQNDCGDNSDEENC 2991
Cdd:pfam00057    1 STCSP-NEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2229-2261 1.18e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.02  E-value: 1.18e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2229 TCSENEFTCGYGLCIPKIFRCDRHNDCGDYSDE 2261
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1782-1822 1.26e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 53.37  E-value: 1.26e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 767918155   1782 IVNSSLVMPSGLTLDYEEDLLYWVDASLQRIERSTLTGVDR 1822
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2311-2343 1.34e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.02  E-value: 1.34e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2311 TCPPHEFKCDNGRCIEMMKLCNHLDDCLDNSDE 2343
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2870-2903 1.43e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 53.02  E-value: 1.43e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767918155  2870 RTCRPGQFRCANGRCIPQAWKCDVDNDCGDHSDE 2903
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2749-2781 1.49e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.64  E-value: 1.49e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2749 CSSTQFLCANNeKCIPIWWKCDGQKDCSDGSDE 2781
Cdd:smart00192    2 CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2749-2782 2.10e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.21  E-value: 2.10e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 767918155 2749 CSSTQFLCANNeKCIPIWWKCDGQKDCSDGSDEL 2782
Cdd:cd00112     1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
346-377 2.16e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.25  E-value: 2.16e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 767918155    346 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDE 377
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1977-2009 2.46e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.25  E-value: 2.46e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   1977 TCSPTAFTCANGRCVQYSYRCDYYNDCGDGSDE 2009
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
262-294 2.58e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.25  E-value: 2.58e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    262 QCGLFSFPCKNGRCVPNYYLCDGVDDCHDNSDE 294
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2268-2301 3.08e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 51.87  E-value: 3.08e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767918155  2268 TCQQNQFTCQNGRCISKTFVCDEDNDCGDGSDEL 2301
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEE 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3035-3069 4.20e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 51.44  E-value: 4.20e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 3035 CHPEYFQCTSGHCVHSELKCDGSADCLDASDEADC 3069
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1977-2012 5.32e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 51.48  E-value: 5.32e-08
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155  1977 TCSPTAFTCANGRCVQYSYRCDYYNDCGDGSDEAGC 2012
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2499-2541 5.58e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 51.45  E-value: 5.58e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   2499 ETIINHRLPAAESLAVDWVSRKLYWLDARLDGLFVSDLNGGHR 2541
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
13-55 6.53e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 51.06  E-value: 6.53e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155     13 EILAANRVENVESLAFDWISKNLYWTDSHYKSISVMRLADKTR 55
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2228-2264 6.73e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 51.10  E-value: 6.73e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 767918155  2228 RTCSENEFTCGYGLCIPKIFRCDRHNDCGDYSDERGC 2264
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1120-1165 8.31e-08

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 51.01  E-value: 8.31e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 767918155  1120 GKLYWsdqgTDSGVPAKIASANMDGTSVKTLFTGNLEHLECVTLDI 1165
Cdd:pfam00058    1 GRLYW----TDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2311-2346 1.04e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 50.32  E-value: 1.04e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155  2311 TCPPHEFKCDNGRCIEMMKLCNHLDDCLDNSDEKGC 2346
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2101-2132 1.04e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.28  E-value: 1.04e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 767918155 2101 CSSSEFQCASGRCIPQHWYCDQETDCFDASDE 2132
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1464-1504 1.14e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.68  E-value: 1.14e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 767918155   1464 VLVSEGIVTPRGLAVDRSDGYVYWVDDSLDIIARIRINGEN 1504
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1328-1489 1.15e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 55.86  E-value: 1.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1328 AGQGRNALHVDVDVSSGFIYWCDfsssvASDNAIRRIKPDGSSLMNIVTHGigeNGVRGIAVDWVAGNLYFTNAFVSEtl 1407
Cdd:COG3391    64 AAAVADADGADAGADGRRLYVAN-----SGSGRVSVIDLATGKVVATIPVG---GGPRGLAVDPDGGRLYVADSGNGR-- 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1408 ieVLRINTTYRRVLLKVTV-DMPRHIVVDPKNRYLFWADYGQrPKIER--SFLDCTNRTVL--VSEGiVTPRGLAVDRSD 1482
Cdd:COG3391   134 --VSVIDTATGKVVATIPVgAGPHGIAVDPDGKRLYVANSGS-NTVSVivSVIDTATGKVVatIPVG-GGPVGVAVSPDG 209

                  ....*..
gi 767918155 1483 GYVYWVD 1489
Cdd:COG3391   210 RRLYVAN 216
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
1328-1537 1.17e-07

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 56.17  E-value: 1.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1328 AGQGRNALHVDVDvSSGFIYWCDfsssvASDNAIRRIKPDGSSLMNIVTHGIGE---NGVRGIAVDwVAGNLYftnafVS 1404
Cdd:cd05819    51 DGQFNEPAGVAVD-SDGNLYVAD-----TGNHRIQKFDPDGNFLASFGGSGDGDgefNGPRGIAVD-SSGNIY-----VA 118
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1405 ETL---IEVLRINTTYRRVLLKVTVDM-----PRHIVVDPKNrYLFWADYGQRpKIERSFLDCTNRTVLVSEGIV----- 1471
Cdd:cd05819   119 DTGnhrIQKFDPDGEFLTTFGSGGSGPgqfngPTGVAVDSDG-NIYVADTGNH-RIQVFDPDGNFLTTFGSTGTGpgqfn 196
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767918155 1472 TPRGLAVDrSDGYVYwVDDSLDiiARIRI-NGENSEVIRYGSRYPT------PYGITVFENSIIWV-DRNLKKI 1537
Cdd:cd05819   197 YPTGIAVD-SDGNIY-VADSGN--NRVQVfDPDGAGFGGNGNFLGSdgqfnrPSGLAVDSDGNLYVaDTGNNRI 266
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2558-2592 1.18e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.68  E-value: 1.18e-07
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 767918155   2558 DNPRGLALHPQYGYLYWADWGhRAYIGRVGMDGTN 2592
Cdd:smart00135    9 GHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTN 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1936-1968 1.27e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 50.32  E-value: 1.27e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767918155  1936 RCGASSFTCSNGRCISEEWKCDNDNDCGDGSDE 1968
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3414-3457 1.37e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.29  E-value: 1.37e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 767918155   3414 KWLISTDLDQPAAIAVNPKLGLMFWTDWGkEPKIESAWMNGEDR 3457
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
75-116 1.42e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 50.24  E-value: 1.42e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155    75 GYLFFTDWFRPAKIMRAWSDGSHLLPVINTTLGWPNGLAIDW 116
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
758-798 1.44e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 50.24  E-value: 1.44e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155   758 RNLYWTDYALE-TIEVSKIDGSHRTVLISKNLTNPRGLALDP 798
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
804-844 1.53e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 50.24  E-value: 1.53e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 767918155   804 LLFWSDWGHHPRIERASMDGSMRTVIVQDKIFWPCGLTIDY 844
Cdd:pfam00058    2 RLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1419-1462 1.59e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.29  E-value: 1.59e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 767918155   1419 RVLLKVTVDMPRHIVVDPKNRYLFWADYGqRPKIERSFLDCTNR 1462
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
424-459 2.07e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 2.07e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 767918155  424 CTASQFKCASGdKCIGVTNRCDGVFDCSDNSDEAGC 459
Cdd:cd00112     1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3034-3066 2.16e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.55  E-value: 2.16e-07
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   3034 TCHPEYFQCTSGHCVHSELKCDGSADCLDASDE 3066
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3165-3196 2.36e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.55  E-value: 2.36e-07
                            10        20        30
                    ....*....|....*....|....*....|..
gi 767918155   3165 CTEYEYKCGNGHCIPHDNVCDDADDCGDWSDE 3196
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2185-2225 2.62e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.13  E-value: 2.62e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 767918155 2185 CSDSEFLCVNdrppdRRCIPQSWVCDGDVDCTDGYDEnQNC 2225
Cdd:cd00112     1 CPPNEFRCAN-----GRCIPSSWVCDGEDDCGDGSDE-ENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
467-501 4.54e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.74  E-value: 4.54e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  467 CHSDEFQCQeDGICIPNFWECDGHPDCLYGSDEHN 501
Cdd:cd00112     1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEEN 34
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1696-1737 4.82e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.75  E-value: 4.82e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   1696 TVIASGIGTADGIAFDWITRRIYYSDYLNQMINSMAEDGSNR 1737
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3033-3069 5.27e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 48.40  E-value: 5.27e-07
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 767918155  3033 RTCHPEYFQCTSGHCVHSELKCDGSADCLDASDEADC 3069
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2919-2951 5.79e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.36  E-value: 5.79e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2919 TEFSCKtNYRCIPKWAVCNGVDDCRDNSDEQGC 2951
Cdd:cd00112     4 NEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2456-2497 5.81e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.37  E-value: 5.81e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   2456 YSLILEGLDNVVALDFDRVEKRLYWIDTQRQVIERMFLNKTN 2497
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2185-2221 8.42e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 47.63  E-value: 8.42e-07
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 767918155   2185 CSDSEFLCVNdrppdRRCIPQSWVCDGDVDCTDGYDE 2221
Cdd:smart00192    2 CPPGEFQCDN-----GRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3122-3152 8.50e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 47.63  E-value: 8.50e-07
                            10        20        30
                    ....*....|....*....|....*....|.
gi 767918155   3122 SPNRFRCDNNRCIYSHEVCNGVDDCGDGTDE 3152
Cdd:smart00192    3 PPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
467-499 8.75e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 47.63  E-value: 8.75e-07
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    467 CHSDEFQCQeDGICIPNFWECDGHPDCLYGSDE 499
Cdd:smart00192    2 CPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
828-869 8.76e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 47.98  E-value: 8.76e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155    828 VIVQDKIFWPCGLTIDYPNRLLYFMDSYLDYMDFCDYNGHHR 869
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
346-380 9.48e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 47.63  E-value: 9.48e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 767918155   346 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC 380
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3122-3152 9.83e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 9.83e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 767918155 3122 SPNRFRCDNNRCIYSHEVCNGVDDCGDGTDE 3152
Cdd:cd00112     2 PPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2996-3030 1.15e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 47.63  E-value: 1.15e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 767918155  2996 CTESEFRCVNQQCIPSRWICDHYNDCGDNSDERDC 3030
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2519-2567 1.53e-06

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 47.15  E-value: 1.53e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 767918155  2519 RKLYWLDARLD-GLFVSDLNGGHRRMLAQHcvdanntfCFDNPRGLALHP 2567
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTD--------DLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1737-1779 1.55e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 47.21  E-value: 1.55e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 767918155   1737 RTVIAR-VPKPRAIVLDPCQGYLYWADWDTHaKIERATLGGNFR 1779
Cdd:smart00135    1 RTLLSSgLGHPNGLAVDWIEGRLYWTDWGLD-VIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1148-1190 1.78e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 47.21  E-value: 1.78e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   1148 KTLFTGNLEHLECVTLDIEEQKLYWAVTGRGVIERGNVDGTDR 1190
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1106-1147 1.88e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 47.21  E-value: 1.88e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   1106 GVGFPIGITVDPARGKLYWSDQGTDsgvpaKIASANMDGTSV 1147
Cdd:smart00135    7 GLGHPNGLAVDWIEGRLYWTDWGLD-----VIEVANLDGTNR 43
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
590-625 2.19e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.85  E-value: 2.19e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155   590 CSDFNGGCTHECVQEPFGAKCLCPLGFLLANDSKTC 625
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2831-2862 2.50e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 46.47  E-value: 2.50e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 767918155  2831 CDSNEWQCANKRCIPESWQCDTFNDCEDNSDE 2862
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3163-3199 2.60e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 46.47  E-value: 2.60e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 767918155  3163 KPCTEYEYKCGNGHCIPHDNVCDDADDCGDWSDELGC 3199
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1259-1295 2.63e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.47  E-value: 2.63e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 767918155  1259 CSNNMNACQQICLPVPGGlFSCACATGFKLNPDNRSC 1295
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGG-YTCSCPEGYELQDDGRTC 36
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2021-2054 2.81e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 46.43  E-value: 2.81e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 767918155 2021 TEFMCNNRRCIPREFICNGVDNCHDNntSDEKNC 2054
Cdd:cd00112     4 NEFRCANGRCIPSSWVCDGEDDCGDG--SDEENC 35
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1756-1797 3.12e-06

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 46.38  E-value: 3.12e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  1756 GYLYWADWDTHAKIERATLGGNFRVPIVNSSLVMPSGLTLDY 1797
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2058-2091 3.77e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 46.09  E-value: 3.77e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 767918155   2058 TCQSGYTKCHNSNiCIPRVYLCDGDNDCGDNSDE 2091
Cdd:smart00192    1 TCPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2358-2387 4.79e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 45.70  E-value: 4.79e-06
                           10        20        30
                   ....*....|....*....|....*....|
gi 767918155  2358 GCDHNCTDTLTSFYCSCRPGYKLMSDKRTC 2387
Cdd:pfam14670    7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1629-1867 5.06e-06

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 51.17  E-value: 5.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1629 FALSNSLRSLHLDPENHSppFQTINVER----TVMSLDYDsvsDRIYFTQNLASGVGQISYATlssgiHTPTVIASGIGT 1704
Cdd:COG4257    32 FTDQGGGRIGRLDPATGE--FTEYPLGGgsgpHGIAVDPD---GNLWFTDNGNNRIGRIDPKT-----GEITTFALPGGG 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1705 AD--GIAFD-----WITrriyysdylNQMINSMAE-DGSNRTVIA-RVPK----PRAIVLDPcQGYLYWADWDTHA--KI 1769
Cdd:COG4257   102 SNphGIAFDpdgnlWFT---------DQGGNRIGRlDPATGEVTEfPLPTggagPYGIAVDP-DGNLWVTDFGANAigRI 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1770 ERATlgGNFRVPIVNSSLVMPSGLTLDyEEDLLYWVDA---SLQRIerSTLTGVDREVIV-NAAVHAFGLTLYGQ-YIYW 1844
Cdd:COG4257   172 DPDT--GTLTEYALPTPGAGPRGLAVD-PDGNLWVADTgsgRIGRF--DPKTGTVTEYPLpGGGARPYGVAVDGDgRVWF 246
                         250       260
                  ....*....|....*....|...
gi 767918155 1845 TDLYTQRIYRankYDGSGQIAMT 1867
Cdd:COG4257   247 AESGANRIVR---FDPDTELTEY 266
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
262-297 5.65e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 45.70  E-value: 5.65e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155   262 QCGLFSFPCKNGRCVPNYYLCDGVDDCHDNSDEQLC 297
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3391-3431 6.39e-06

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 45.61  E-value: 6.39e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  3391 RHIYWSDVKNK-RIEVAKLDGRYRKWLISTDLDQPAAIAVNP 3431
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1473-1781 7.60e-06

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 50.79  E-value: 7.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1473 PRGLAVDRsDGYVYWVDDSLDIIARIRINGENSEVIRYGSRyPTPYGITVFENSIIWV-DRNLKKIFQaskepenteppt 1551
Cdd:COG4257    19 PRDVAVDP-DGAVWFTDQGGGRIGRLDPATGEFTEYPLGGG-SGPHGIAVDPDGNLWFtDNGNNRIGR------------ 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1552 virdninwlrdVTIFDKQVQprspaevnnnpclennggcshlCFALPGLHTPKCDCAFGtlqSDGKncaistenfLIFAL 1631
Cdd:COG4257    85 -----------IDPKTGEIT----------------------TFALPGGGSNPHGIAFD---PDGN---------LWFTD 119
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1632 SNSLRSLHLDPENHSppFQTINVERTV---MSLDYDSvSDRIYFTQNLASGVGQISYATLSSGIHT-PTVIA--SGIG-T 1704
Cdd:COG4257   120 QGGNRIGRLDPATGE--VTEFPLPTGGagpYGIAVDP-DGNLWVTDFGANAIGRIDPDTGTLTEYAlPTPGAgpRGLAvD 196
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1705 ADGiafdwitrRIYYSDYLN---QMINsmAEDGSNRTVI--ARVPKPRAIVLDPcQGYLYWADWDTH--AKIERATLGGN 1777
Cdd:COG4257   197 PDG--------NLWVADTGSgriGRFD--PKTGTVTEYPlpGGGARPYGVAVDG-DGRVWFAESGANriVRFDPDTELTE 265

                  ....
gi 767918155 1778 FRVP 1781
Cdd:COG4257   266 YVLP 269
EGF_CA smart00179
Calcium-binding EGF-like domain;
3244-3284 8.00e-06

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 45.32  E-value: 8.00e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   3244 DINECEQFGTCPQH--CRNTKGSYECVCADGFTSmsdrpGKRC 3284
Cdd:smart00179    1 DIDECASGNPCQNGgtCVNTVGSYRCECPPGYTD-----GRNC 38
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
424-456 8.76e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.93  E-value: 8.76e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    424 CTASQFKCASGdKCIGVTNRCDGVFDCSDNSDE 456
Cdd:smart00192    2 CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2919-2948 1.01e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.93  E-value: 1.01e-05
                            10        20        30
                    ....*....|....*....|....*....|
gi 767918155   2919 TEFSCKtNYRCIPKWAVCNGVDDCRDNSDE 2948
Cdd:smart00192    5 GEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
467-501 1.11e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.93  E-value: 1.11e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 767918155   467 CHSDEFQCQeDGICIPNFWECDGHPDCLYGSDEHN 501
Cdd:pfam00057    3 CSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDEEN 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1583-1619 1.19e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 44.54  E-value: 1.19e-05
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 767918155  1583 CLENNGGCSHLCFALPGLHTpkCDCAFG-TLQSDGKNC 1619
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYT--CSCPEGyELQDDGRTC 36
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2021-2051 1.47e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.16  E-value: 1.47e-05
                            10        20        30
                    ....*....|....*....|....*....|.
gi 767918155   2021 TEFMCNNRRCIPREFICNGVDNCHDNntSDE 2051
Cdd:smart00192    5 GEFQCDNGRCIPSSWVCDGVDDCGDG--SDE 33
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
2384-2427 1.74e-05

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 48.92  E-value: 1.74e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 767918155 2384 KRTCVDIDECTEMPFVCSQKCENVIGSYICKCAPGYLREPDGKT 2427
Cdd:cd01475   181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2185-2225 2.02e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.16  E-value: 2.02e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 767918155  2185 CSDSEFLCvndrpPDRRCIPQSWVCDGDVDCTDGYDEnQNC 2225
Cdd:pfam00057    3 CSPNEFQC-----GSGECIPRSWVCDGDPDCGDGSDE-ENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2059-2092 2.14e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 43.73  E-value: 2.14e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 767918155 2059 CQSGYTKCHNSNiCIPRVYLCDGDNDCGDNSDEN 2092
Cdd:cd00112     1 CPPNEFRCANGR-CIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2749-2782 2.23e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 43.78  E-value: 2.23e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767918155  2749 CSSTQFLCANNEkCIPIWWKCDGQKDCSDGSDEL 2782
Cdd:pfam00057    3 CSPNEFQCGSGE-CIPRSWVCDGDPDCGDGSDEE 35
EGF_CA smart00179
Calcium-binding EGF-like domain;
627-666 3.22e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 43.39  E-value: 3.22e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155    627 DIDECDILGSCSQH--CYNMRGSFRCSCDTGYmleSDGRTCK 666
Cdd:smart00179    1 DIDECASGNPCQNGgtCVNTVGSYRCECPPGY---TDGRNCE 39
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1439-1479 4.42e-05

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 43.30  E-value: 4.42e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 767918155  1439 RYLFWADYGQRPKIERSFLDCTNRTVLVSEGIVTPRGLAVD 1479
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVD 41
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2057-2091 4.48e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 43.01  E-value: 4.48e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 767918155  2057 RTCQSGYTKCHnSNICIPRVYLCDGDNDCGDNSDE 2091
Cdd:pfam00057    1 STCSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDE 34
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
3244-3284 4.89e-05

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 43.01  E-value: 4.89e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 767918155 3244 DINECEQFGTCPQH--CRNTKGSYECVCADGFTsmsdrpGKRC 3284
Cdd:cd00054     1 DIDECASGNPCQNGgtCVNTVGSYRCSCPPGYT------GRNC 37
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
635-665 5.25e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 43.00  E-value: 5.25e-05
                           10        20        30
                   ....*....|....*....|....*....|.
gi 767918155   635 GSCSQHCYNMRGSFRCSCDTGYMLESDGRTC 665
Cdd:pfam14670    6 GGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2790-2821 9.98e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 41.85  E-value: 9.98e-05
                            10        20        30
                    ....*....|....*....|....*....|..
gi 767918155   2790 CRLGQFQCSDGNCTSPQTLCNAHQNCPDGSDE 2821
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2614-2654 1.67e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 41.38  E-value: 1.67e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  2614 DLLYWADAHLGY-IEYSDLEGHHRHTVYDGALPHPFAITIFE 2654
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2645-2678 2.04e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 41.43  E-value: 2.04e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 767918155   2645 PHPFAITIFEDTIYWTDWNTRTVEKgNKYDGSNR 2678
Cdd:smart00135   11 PNGLAVDWIEGRLYWTDWGLDVIEV-ANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
55-97 2.25e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 41.05  E-value: 2.25e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155     55 RRTVVQYLNNPRSVVVHPFAGYLFFTDWFRPaKIMRAWSDGSH 97
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLD-VIEVANLDGTN 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3122-3157 2.31e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 41.08  E-value: 2.31e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155  3122 SPNRFRCDNNRCIYSHEVCNGVDDCGDGTDetEEHC 3157
Cdd:pfam00057    4 SPNEFQCGSGECIPRSWVCDGDPDCGDGSD--EENC 37
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2706-2735 2.84e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 40.69  E-value: 2.84e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 767918155  2706 CGTNNGGCSHLCLIKPGgkGFTCECPDDFR 2735
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG--GYTCSCPEGYE 28
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2790-2822 3.15e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.65  E-value: 3.15e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2790 CRLGQFQCSDGNCTSPQTLCNAHQNCPDGSDED 2822
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2022-2054 3.81e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.31  E-value: 3.81e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767918155  2022 EFMCNNRRCIPREFICNGVDNCHDNntSDEKNC 2054
Cdd:pfam00057    7 EFQCGSGECIPRSWVCDGDPDCGDG--SDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2920-2951 4.04e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.31  E-value: 4.04e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 767918155  2920 EFSCKTNyRCIPKWAVCNGVDDCRDNSDEQGC 2951
Cdd:pfam00057    7 EFQCGSG-ECIPRSWVCDGDPDCGDGSDEENC 37
EGF_CA smart00179
Calcium-binding EGF-like domain;
2389-2428 5.00e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 40.31  E-value: 5.00e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   2389 DIDECTEMPfVCSQ--KCENVIGSYICKCAPGYLrepDGKTC 2428
Cdd:smart00179    1 DIDECASGN-PCQNggTCVNTVGSYRCECPPGYT---DGRNC 38
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
627-666 5.59e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 39.93  E-value: 5.59e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 767918155  627 DIDECDILGSCSQH--CYNMRGSFRCSCDTGYMlesdGRTCK 666
Cdd:cd00054     1 DIDECASGNPCQNGgtCVNTVGSYRCSCPPGYT----GRNCE 38
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
548-581 6.02e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 39.92  E-value: 6.02e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 767918155    548 RCPSWQWQClGHNICVNLSVVCDGIFDCPNGTDE 581
Cdd:smart00192    1 TCPPGEFQC-DNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
424-459 6.48e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 39.92  E-value: 6.48e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155   424 CTASQFKCASGdKCIGVTNRCDGVFDCSDNSDEAGC 459
Cdd:pfam00057    3 CSPNEFQCGSG-ECIPRSWVCDGDPDCGDGSDEENC 37
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
218-250 6.62e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 39.53  E-value: 6.62e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767918155   218 NGDCSHFCFPVPNfQRVCGCPYGMRLASNHLTC 250
Cdd:pfam14670    5 NGGCSHLCLNTPG-GYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1892-1929 9.52e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 39.15  E-value: 9.52e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 767918155  1892 CEQFNGGCSHICAPGPNGAECQCPHEgnWYLANNRKHC 1929
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEG--YELQDDGRTC 36
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
1024-1188 9.56e-04

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 44.11  E-value: 9.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1024 DAEQYIYWVENP-GEIHRVKTDGTNRTVFASISmvGPSMNLALD-----WI---SRNLYSTNPRTQSIEVLTLHGDIRYR 1094
Cdd:COG3386    16 DPDGRLYWVDIPgGRIHRYDPDGGAVEVFAEPS--GRPNGLAFDpdgrlLVadhGRGLVRFDPADGEVTVLADEYGKPLN 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1095 ktlIANDGtalgvgfpigiTVDPArGKLYWSDQGTDSGvPAKIASANMDGtSVKTLFTG----N-LehleCVTLDieEQK 1169
Cdd:COG3386    94 ---RPNDG-----------VVDPD-GRLYFTDMGEYLP-TGALYRVDPDG-SLRVLADGltfpNgI----AFSPD--GRT 150
                         170
                  ....*....|....*....
gi 767918155 1170 LYWAVTGRGVIERGNVDGT 1188
Cdd:COG3386   151 LYVADTGAGRIYRFDLDAD 169
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
1707-1812 1.04e-03

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 44.23  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1707 GIAFDwITRRIYYSDYLNQMI-------NSMAEDGSNRTVIARVPKPRAIVLDPcQGYLYWADWDTHA----KIERATLG 1775
Cdd:cd05819   153 GVAVD-SDGNIYVADTGNHRIqvfdpdgNFLTTFGSTGTGPGQFNYPTGIAVDS-DGNIYVADSGNNRvqvfDPDGAGFG 230
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 767918155 1776 GNFRVPIVNSSLVMPSGLTLDyEEDLLYWVDASLQRI 1812
Cdd:cd05819   231 GNGNFLGSDGQFNRPSGLAVD-SDGNLYVADTGNNRI 266
EGF_CA pfam07645
Calcium-binding EGF domain;
3244-3272 1.44e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 38.76  E-value: 1.44e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 767918155  3244 DINECEQFGT-CPQ--HCRNTKGSYECVCADG 3272
Cdd:pfam07645    1 DVDECATGTHnCPAntVCVNTIGSFECRCPDG 32
EGF_CA pfam07645
Calcium-binding EGF domain;
2389-2418 1.77e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 38.37  E-value: 1.77e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 767918155  2389 DIDECTEMPFVCSQ--KCENVIGSYICKCAPG 2418
Cdd:pfam07645    1 DVDECATGTHNCPAntVCVNTIGSFECRCPDG 32
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
698-737 2.63e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 38.35  E-value: 2.63e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 767918155    698 LVENGSYIVAVDFDSISGRIFWSDATQGKTWSAFQNGTDR 737
Cdd:smart00135    4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
EGF_CA smart00179
Calcium-binding EGF-like domain;
2348-2388 2.64e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 38.00  E-value: 2.64e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 767918155   2348 INECHDPSISGCDHNCTDTLTSFYCSCRPGYklmSDKRTCV 2388
Cdd:smart00179    2 IDECASGNPCQNGGTCVNTVGSYRCECPPGY---TDGRNCE 39
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
3575-3593 4.88e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 37.22  E-value: 4.88e-03
                           10
                   ....*....|....*....
gi 767918155  3575 CSHLCLLRPGGYSCACPQG 3593
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEG 26
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1830-1862 5.18e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 37.20  E-value: 5.18e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   1830 VHAFGLTLYGQYIYWTDLYTQRIYRANkYDGSG 1862
Cdd:smart00135   11 PNGLAVDWIEGRLYWTDWGLDVIEVAN-LDGTN 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1048-1092 7.03e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 37.20  E-value: 7.03e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 767918155   1048 RTVFASisMVGPSMNLALDWISRNLYSTNPRTQSIEVLTLHGDIR 1092
Cdd:smart00135    1 RTLLSS--GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
549-581 9.46e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 36.42  E-value: 9.46e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155  549 CPSWQWQClGHNICVNLSVVCDGIFDCPNGTDE 581
Cdd:cd00112     1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDE 32
 
Name Accession Description Interval E-value
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2996-3030 2.09e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 61.07  E-value: 2.09e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 2996 CTESEFRCVNQQCIPSRWICDHYNDCGDNSDERDC 3030
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2956-2991 5.94e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 59.53  E-value: 5.94e-11
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 767918155 2956 CHPvGDFRCKNHHCIPLRWQCDGQNDCGDNSDEENC 2991
Cdd:cd00112     1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2142-2174 7.75e-11

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 59.18  E-value: 7.75e-11
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2142 TCLADEFKCDGGRCIPSEWICDGDNDCGDMSDE 2174
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
738-780 1.37e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.77  E-value: 1.37e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155    738 RVVFDSSIILTETIAIDWVGRNLYWTDYALETIEVSKIDGSHR 780
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2871-2903 1.51e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 58.41  E-value: 1.51e-10
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2871 TCRPGQFRCANGRCIPQAWKCDVDNDCGDHSDE 2903
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
508-542 1.76e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.37  E-value: 1.76e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  508 CPSSYFHCDNGNCIHRAWLCDRDNDCGDMSDEKDC 542
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
346-380 1.88e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.37  E-value: 1.88e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  346 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC 380
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
386-420 2.01e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 57.99  E-value: 2.01e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  386 CQPSQFNCPNHRCIDLSFVCDGDKDCVDGSDEVGC 420
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2595-2636 2.40e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.00  E-value: 2.40e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   2595 VIISTKLEWPNGITIDYTNDLLYWADAHLGYIEYSDLEGHHR 2636
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2872-2903 3.25e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 57.60  E-value: 3.25e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 767918155 2872 CRPGQFRCANGRCIPQAWKCDVDNDCGDHSDE 2903
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2143-2175 3.52e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 57.60  E-value: 3.52e-10
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2143 CLADEFKCDGGRCIPSEWICDGDNDCGDMSDED 2175
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
101-141 4.90e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 4.90e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 767918155    101 VINTTLGWPNGLAIDWAASRLYWVDAYFDKIEHSTFDGLDR 141
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2230-2264 5.20e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.83  E-value: 5.20e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 2230 CSENEFTCGYGLCIPKIFRCDRHNDCGDYSDERGC 2264
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2955-2988 5.47e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.87  E-value: 5.47e-10
                            10        20        30
                    ....*....|....*....|....*....|....
gi 767918155   2955 TCHPvGDFRCKNHHCIPLRWQCDGQNDCGDNSDE 2988
Cdd:smart00192    1 TCPP-GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
782-826 5.56e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 5.56e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 767918155    782 VLISKNLTNPRGLALDPRmnEHLLFWSDWGhHPRIERASMDGSMR 826
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWI--EGRLYWTDWG-LDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2995-3027 6.46e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.49  E-value: 6.46e-10
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2995 ECTESEFRCVNQQCIPSRWICDHYNDCGDNSDE 3027
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3378-3413 7.17e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.84  E-value: 7.17e-10
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 767918155   3378 VMQPDGIAVDWVGRHIYWSDVKNKRIEVAKLDGRYR 3413
Cdd:smart00135    8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
304-338 1.03e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.06  E-value: 1.03e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  304 CSSSAFTCGHGECIPAHWRCDKRNDCVDGSDEHNC 338
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2141-2174 1.17e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 56.10  E-value: 1.17e-09
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767918155  2141 RTCLADEFKCDGGRCIPSEWICDGDNDCGDMSDE 2174
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3434-3475 1.35e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 56.01  E-value: 1.35e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  3434 GLMFWTDWGKEPKIESAWMNGEDRNILVFEDLGWPTGLSIDY 3475
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2268-2300 1.40e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.72  E-value: 1.40e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2268 TCQQNQFTCQNGRCISKTFVCDEDNDCGDGSDE 2300
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
506-542 1.50e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 55.72  E-value: 1.50e-09
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 767918155   506 KTCPSSYFHCDNGNCIHRAWLCDRDNDCGDMSDEKDC 542
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
507-539 1.60e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 1.60e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    507 TCPSSYFHCDNGNCIHRAWLCDRDNDCGDMSDE 539
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2269-2301 1.63e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.68  E-value: 1.63e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2269 CQQNQFTCQNGRCISKTFVCDEDNDCGDGSDEL 2301
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2312-2346 1.82e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.29  E-value: 1.82e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 2312 CPPHEFKCDNGRCIEMMKLCNHLDDCLDNSDEKGC 2346
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
385-417 2.19e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.95  E-value: 2.19e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    385 TCQPSQFNCPNHRCIDLSFVCDGDKDCVDGSDE 417
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1978-2012 2.37e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.91  E-value: 2.37e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 1978 CSPTAFTCANGRCVQYSYRCDYYNDCGDGSDEAGC 2012
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1936-1968 2.56e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.95  E-value: 2.56e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   1936 RCGASSFTCSNGRCISEEWKCDNDNDCGDGSDE 1968
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3459-3501 2.69e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 55.30  E-value: 2.69e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   3459 ILVFEDLGWPTGLSIDYLNnDRIYWSDFKEDVIETIKYDGTDR 3501
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIE-GRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1937-1969 2.69e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.91  E-value: 2.69e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 1937 CGASSFTCSNGRCISEEWKCDNDNDCGDGSDEM 1969
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2570-2611 2.73e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 55.24  E-value: 2.73e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  2570 GYLYWADWGHRAYIGRVGMDGTNKSVIISTKLEWPNGITIDY 2611
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3165-3199 4.05e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.52  E-value: 4.05e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 3165 CTEYEYKCGNGHCIPHDNVCDDADDCGDWSDELGC 3199
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
385-420 4.39e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 54.56  E-value: 4.39e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155   385 TCQPSQFNCPNHRCIDLSFVCDGDKDCVDGSDEVGC 420
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2831-2863 5.43e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.13  E-value: 5.43e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2831 CDSNEWQCANKRCIPESWQCDTFNDCEDNSDED 2863
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
303-338 6.06e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 53.79  E-value: 6.06e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155   303 TCSSSAFTCGHGECIPAHWRCDKRNDCVDGSDEHNC 338
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2831-2862 6.12e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.79  E-value: 6.12e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 767918155   2831 CDSNEWQCANKRCIPESWQCDTFNDCEDNSDE 2862
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
303-335 7.67e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.41  E-value: 7.67e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    303 TCSSSAFTCGHGECIPAHWRCDKRNDCVDGSDE 335
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2100-2132 8.37e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 53.41  E-value: 8.37e-09
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767918155  2100 TCSSSEFQCASGRCIPQHWYCDQETDCFDASDE 2132
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2100-2132 9.23e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.41  E-value: 9.23e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2100 TCSSSEFQCASGRCIPQHWYCDQETDCFDASDE 2132
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
263-297 9.31e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 53.36  E-value: 9.31e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  263 CGLFSFPCKNGRCVPNYYLCDGVDDCHDNSDEQLC 297
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2954-2991 1.06e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 53.41  E-value: 1.06e-08
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 767918155  2954 RTCHPvGDFRCKNHHCIPLRWQCDGQNDCGDNSDEENC 2991
Cdd:pfam00057    1 STCSP-NEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2229-2261 1.18e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.02  E-value: 1.18e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2229 TCSENEFTCGYGLCIPKIFRCDRHNDCGDYSDE 2261
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1782-1822 1.26e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 53.37  E-value: 1.26e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 767918155   1782 IVNSSLVMPSGLTLDYEEDLLYWVDASLQRIERSTLTGVDR 1822
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2311-2343 1.34e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.02  E-value: 1.34e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2311 TCPPHEFKCDNGRCIEMMKLCNHLDDCLDNSDE 2343
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2870-2903 1.43e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 53.02  E-value: 1.43e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767918155  2870 RTCRPGQFRCANGRCIPQAWKCDVDNDCGDHSDE 2903
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2749-2781 1.49e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.64  E-value: 1.49e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   2749 CSSTQFLCANNeKCIPIWWKCDGQKDCSDGSDE 2781
Cdd:smart00192    2 CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2749-2782 2.10e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.21  E-value: 2.10e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 767918155 2749 CSSTQFLCANNeKCIPIWWKCDGQKDCSDGSDEL 2782
Cdd:cd00112     1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
346-377 2.16e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.25  E-value: 2.16e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 767918155    346 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDE 377
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1977-2009 2.46e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.25  E-value: 2.46e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   1977 TCSPTAFTCANGRCVQYSYRCDYYNDCGDGSDE 2009
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
262-294 2.58e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.25  E-value: 2.58e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    262 QCGLFSFPCKNGRCVPNYYLCDGVDDCHDNSDE 294
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2268-2301 3.08e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 51.87  E-value: 3.08e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767918155  2268 TCQQNQFTCQNGRCISKTFVCDEDNDCGDGSDEL 2301
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEE 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3035-3069 4.20e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 51.44  E-value: 4.20e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155 3035 CHPEYFQCTSGHCVHSELKCDGSADCLDASDEADC 3069
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1977-2012 5.32e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 51.48  E-value: 5.32e-08
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155  1977 TCSPTAFTCANGRCVQYSYRCDYYNDCGDGSDEAGC 2012
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2499-2541 5.58e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 51.45  E-value: 5.58e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   2499 ETIINHRLPAAESLAVDWVSRKLYWLDARLDGLFVSDLNGGHR 2541
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
13-55 6.53e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 51.06  E-value: 6.53e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155     13 EILAANRVENVESLAFDWISKNLYWTDSHYKSISVMRLADKTR 55
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2228-2264 6.73e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 51.10  E-value: 6.73e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 767918155  2228 RTCSENEFTCGYGLCIPKIFRCDRHNDCGDYSDERGC 2264
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1120-1165 8.31e-08

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 51.01  E-value: 8.31e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 767918155  1120 GKLYWsdqgTDSGVPAKIASANMDGTSVKTLFTGNLEHLECVTLDI 1165
Cdd:pfam00058    1 GRLYW----TDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2311-2346 1.04e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 50.32  E-value: 1.04e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155  2311 TCPPHEFKCDNGRCIEMMKLCNHLDDCLDNSDEKGC 2346
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2101-2132 1.04e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.28  E-value: 1.04e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 767918155 2101 CSSSEFQCASGRCIPQHWYCDQETDCFDASDE 2132
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1464-1504 1.14e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.68  E-value: 1.14e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 767918155   1464 VLVSEGIVTPRGLAVDRSDGYVYWVDDSLDIIARIRINGEN 1504
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1328-1489 1.15e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 55.86  E-value: 1.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1328 AGQGRNALHVDVDVSSGFIYWCDfsssvASDNAIRRIKPDGSSLMNIVTHGigeNGVRGIAVDWVAGNLYFTNAFVSEtl 1407
Cdd:COG3391    64 AAAVADADGADAGADGRRLYVAN-----SGSGRVSVIDLATGKVVATIPVG---GGPRGLAVDPDGGRLYVADSGNGR-- 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1408 ieVLRINTTYRRVLLKVTV-DMPRHIVVDPKNRYLFWADYGQrPKIER--SFLDCTNRTVL--VSEGiVTPRGLAVDRSD 1482
Cdd:COG3391   134 --VSVIDTATGKVVATIPVgAGPHGIAVDPDGKRLYVANSGS-NTVSVivSVIDTATGKVVatIPVG-GGPVGVAVSPDG 209

                  ....*..
gi 767918155 1483 GYVYWVD 1489
Cdd:COG3391   210 RRLYVAN 216
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
1328-1537 1.17e-07

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 56.17  E-value: 1.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1328 AGQGRNALHVDVDvSSGFIYWCDfsssvASDNAIRRIKPDGSSLMNIVTHGIGE---NGVRGIAVDwVAGNLYftnafVS 1404
Cdd:cd05819    51 DGQFNEPAGVAVD-SDGNLYVAD-----TGNHRIQKFDPDGNFLASFGGSGDGDgefNGPRGIAVD-SSGNIY-----VA 118
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1405 ETL---IEVLRINTTYRRVLLKVTVDM-----PRHIVVDPKNrYLFWADYGQRpKIERSFLDCTNRTVLVSEGIV----- 1471
Cdd:cd05819   119 DTGnhrIQKFDPDGEFLTTFGSGGSGPgqfngPTGVAVDSDG-NIYVADTGNH-RIQVFDPDGNFLTTFGSTGTGpgqfn 196
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767918155 1472 TPRGLAVDrSDGYVYwVDDSLDiiARIRI-NGENSEVIRYGSRYPT------PYGITVFENSIIWV-DRNLKKI 1537
Cdd:cd05819   197 YPTGIAVD-SDGNIY-VADSGN--NRVQVfDPDGAGFGGNGNFLGSdgqfnrPSGLAVDSDGNLYVaDTGNNRI 266
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2558-2592 1.18e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.68  E-value: 1.18e-07
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 767918155   2558 DNPRGLALHPQYGYLYWADWGhRAYIGRVGMDGTN 2592
Cdd:smart00135    9 GHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTN 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1936-1968 1.27e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 50.32  E-value: 1.27e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767918155  1936 RCGASSFTCSNGRCISEEWKCDNDNDCGDGSDE 1968
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3414-3457 1.37e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.29  E-value: 1.37e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 767918155   3414 KWLISTDLDQPAAIAVNPKLGLMFWTDWGkEPKIESAWMNGEDR 3457
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
75-116 1.42e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 50.24  E-value: 1.42e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155    75 GYLFFTDWFRPAKIMRAWSDGSHLLPVINTTLGWPNGLAIDW 116
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
758-798 1.44e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 50.24  E-value: 1.44e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155   758 RNLYWTDYALE-TIEVSKIDGSHRTVLISKNLTNPRGLALDP 798
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
804-844 1.53e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 50.24  E-value: 1.53e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 767918155   804 LLFWSDWGHHPRIERASMDGSMRTVIVQDKIFWPCGLTIDY 844
Cdd:pfam00058    2 RLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1419-1462 1.59e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.29  E-value: 1.59e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 767918155   1419 RVLLKVTVDMPRHIVVDPKNRYLFWADYGqRPKIERSFLDCTNR 1462
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
424-459 2.07e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 2.07e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 767918155  424 CTASQFKCASGdKCIGVTNRCDGVFDCSDNSDEAGC 459
Cdd:cd00112     1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3034-3066 2.16e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.55  E-value: 2.16e-07
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   3034 TCHPEYFQCTSGHCVHSELKCDGSADCLDASDE 3066
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3165-3196 2.36e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.55  E-value: 2.36e-07
                            10        20        30
                    ....*....|....*....|....*....|..
gi 767918155   3165 CTEYEYKCGNGHCIPHDNVCDDADDCGDWSDE 3196
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2185-2225 2.62e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.13  E-value: 2.62e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 767918155 2185 CSDSEFLCVNdrppdRRCIPQSWVCDGDVDCTDGYDEnQNC 2225
Cdd:cd00112     1 CPPNEFRCAN-----GRCIPSSWVCDGEDDCGDGSDE-ENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
467-501 4.54e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.74  E-value: 4.54e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 767918155  467 CHSDEFQCQeDGICIPNFWECDGHPDCLYGSDEHN 501
Cdd:cd00112     1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEEN 34
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1696-1737 4.82e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.75  E-value: 4.82e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   1696 TVIASGIGTADGIAFDWITRRIYYSDYLNQMINSMAEDGSNR 1737
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3033-3069 5.27e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 48.40  E-value: 5.27e-07
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 767918155  3033 RTCHPEYFQCTSGHCVHSELKCDGSADCLDASDEADC 3069
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2919-2951 5.79e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.36  E-value: 5.79e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2919 TEFSCKtNYRCIPKWAVCNGVDDCRDNSDEQGC 2951
Cdd:cd00112     4 NEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2456-2497 5.81e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.37  E-value: 5.81e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   2456 YSLILEGLDNVVALDFDRVEKRLYWIDTQRQVIERMFLNKTN 2497
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2185-2221 8.42e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 47.63  E-value: 8.42e-07
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 767918155   2185 CSDSEFLCVNdrppdRRCIPQSWVCDGDVDCTDGYDE 2221
Cdd:smart00192    2 CPPGEFQCDN-----GRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3122-3152 8.50e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 47.63  E-value: 8.50e-07
                            10        20        30
                    ....*....|....*....|....*....|.
gi 767918155   3122 SPNRFRCDNNRCIYSHEVCNGVDDCGDGTDE 3152
Cdd:smart00192    3 PPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1323-1522 8.66e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 53.16  E-value: 8.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1323 TMVPVAGQGRNALHVDVDVSSGFIYWCDFSSSVASDNAIRRIKPDGSSLMNIVTHGIGENGVRGIAV--DWVAGN-LYFT 1399
Cdd:COG3391     6 SLLVAVLLAVLALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGadAGADGRrLYVA 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1400 NAFVSEtlieVLRINTTYRRVLLKVTV-DMPRHIVVDPKNRYLFWADYGQRpKIerSFLDCTNRTVL--VSEGiVTPRGL 1476
Cdd:COG3391    86 NSGSGR----VSVIDLATGKVVATIPVgGGPRGLAVDPDGGRLYVADSGNG-RV--SVIDTATGKVVatIPVG-AGPHGI 157
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 767918155 1477 AVDRSDGYVYWVDDSLDIIARI--RINGENSEVIRYGSRYPTPYGITV 1522
Cdd:COG3391   158 AVDPDGKRLYVANSGSNTVSVIvsVIDTATGKVVATIPVGGGPVGVAV 205
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
467-499 8.75e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 47.63  E-value: 8.75e-07
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    467 CHSDEFQCQeDGICIPNFWECDGHPDCLYGSDE 499
Cdd:smart00192    2 CPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
828-869 8.76e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 47.98  E-value: 8.76e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155    828 VIVQDKIFWPCGLTIDYPNRLLYFMDSYLDYMDFCDYNGHHR 869
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
346-380 9.48e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 47.63  E-value: 9.48e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 767918155   346 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC 380
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3122-3152 9.83e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 9.83e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 767918155 3122 SPNRFRCDNNRCIYSHEVCNGVDDCGDGTDE 3152
Cdd:cd00112     2 PPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2996-3030 1.15e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 47.63  E-value: 1.15e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 767918155  2996 CTESEFRCVNQQCIPSRWICDHYNDCGDNSDERDC 3030
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2519-2567 1.53e-06

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 47.15  E-value: 1.53e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 767918155  2519 RKLYWLDARLD-GLFVSDLNGGHRRMLAQHcvdanntfCFDNPRGLALHP 2567
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTD--------DLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1737-1779 1.55e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 47.21  E-value: 1.55e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 767918155   1737 RTVIAR-VPKPRAIVLDPCQGYLYWADWDTHaKIERATLGGNFR 1779
Cdd:smart00135    1 RTLLSSgLGHPNGLAVDWIEGRLYWTDWGLD-VIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1148-1190 1.78e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 47.21  E-value: 1.78e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   1148 KTLFTGNLEHLECVTLDIEEQKLYWAVTGRGVIERGNVDGTDR 1190
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1106-1147 1.88e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 47.21  E-value: 1.88e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   1106 GVGFPIGITVDPARGKLYWSDQGTDsgvpaKIASANMDGTSV 1147
Cdd:smart00135    7 GLGHPNGLAVDWIEGRLYWTDWGLD-----VIEVANLDGTNR 43
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
590-625 2.19e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.85  E-value: 2.19e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155   590 CSDFNGGCTHECVQEPFGAKCLCPLGFLLANDSKTC 625
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2831-2862 2.50e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 46.47  E-value: 2.50e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 767918155  2831 CDSNEWQCANKRCIPESWQCDTFNDCEDNSDE 2862
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3163-3199 2.60e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 46.47  E-value: 2.60e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 767918155  3163 KPCTEYEYKCGNGHCIPHDNVCDDADDCGDWSDELGC 3199
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1259-1295 2.63e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.47  E-value: 2.63e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 767918155  1259 CSNNMNACQQICLPVPGGlFSCACATGFKLNPDNRSC 1295
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGG-YTCSCPEGYELQDDGRTC 36
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2021-2054 2.81e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 46.43  E-value: 2.81e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 767918155 2021 TEFMCNNRRCIPREFICNGVDNCHDNntSDEKNC 2054
Cdd:cd00112     4 NEFRCANGRCIPSSWVCDGEDDCGDG--SDEENC 35
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1756-1797 3.12e-06

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 46.38  E-value: 3.12e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  1756 GYLYWADWDTHAKIERATLGGNFRVPIVNSSLVMPSGLTLDY 1797
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2058-2091 3.77e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 46.09  E-value: 3.77e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 767918155   2058 TCQSGYTKCHNSNiCIPRVYLCDGDNDCGDNSDE 2091
Cdd:smart00192    1 TCPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2358-2387 4.79e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 45.70  E-value: 4.79e-06
                           10        20        30
                   ....*....|....*....|....*....|
gi 767918155  2358 GCDHNCTDTLTSFYCSCRPGYKLMSDKRTC 2387
Cdd:pfam14670    7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1629-1867 5.06e-06

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 51.17  E-value: 5.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1629 FALSNSLRSLHLDPENHSppFQTINVER----TVMSLDYDsvsDRIYFTQNLASGVGQISYATlssgiHTPTVIASGIGT 1704
Cdd:COG4257    32 FTDQGGGRIGRLDPATGE--FTEYPLGGgsgpHGIAVDPD---GNLWFTDNGNNRIGRIDPKT-----GEITTFALPGGG 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1705 AD--GIAFD-----WITrriyysdylNQMINSMAE-DGSNRTVIA-RVPK----PRAIVLDPcQGYLYWADWDTHA--KI 1769
Cdd:COG4257   102 SNphGIAFDpdgnlWFT---------DQGGNRIGRlDPATGEVTEfPLPTggagPYGIAVDP-DGNLWVTDFGANAigRI 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1770 ERATlgGNFRVPIVNSSLVMPSGLTLDyEEDLLYWVDA---SLQRIerSTLTGVDREVIV-NAAVHAFGLTLYGQ-YIYW 1844
Cdd:COG4257   172 DPDT--GTLTEYALPTPGAGPRGLAVD-PDGNLWVADTgsgRIGRF--DPKTGTVTEYPLpGGGARPYGVAVDGDgRVWF 246
                         250       260
                  ....*....|....*....|...
gi 767918155 1845 TDLYTQRIYRankYDGSGQIAMT 1867
Cdd:COG4257   247 AESGANRIVR---FDPDTELTEY 266
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
262-297 5.65e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 45.70  E-value: 5.65e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155   262 QCGLFSFPCKNGRCVPNYYLCDGVDDCHDNSDEQLC 297
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3391-3431 6.39e-06

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 45.61  E-value: 6.39e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  3391 RHIYWSDVKNK-RIEVAKLDGRYRKWLISTDLDQPAAIAVNP 3431
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1473-1781 7.60e-06

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 50.79  E-value: 7.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1473 PRGLAVDRsDGYVYWVDDSLDIIARIRINGENSEVIRYGSRyPTPYGITVFENSIIWV-DRNLKKIFQaskepenteppt 1551
Cdd:COG4257    19 PRDVAVDP-DGAVWFTDQGGGRIGRLDPATGEFTEYPLGGG-SGPHGIAVDPDGNLWFtDNGNNRIGR------------ 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1552 virdninwlrdVTIFDKQVQprspaevnnnpclennggcshlCFALPGLHTPKCDCAFGtlqSDGKncaistenfLIFAL 1631
Cdd:COG4257    85 -----------IDPKTGEIT----------------------TFALPGGGSNPHGIAFD---PDGN---------LWFTD 119
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1632 SNSLRSLHLDPENHSppFQTINVERTV---MSLDYDSvSDRIYFTQNLASGVGQISYATLSSGIHT-PTVIA--SGIG-T 1704
Cdd:COG4257   120 QGGNRIGRLDPATGE--VTEFPLPTGGagpYGIAVDP-DGNLWVTDFGANAIGRIDPDTGTLTEYAlPTPGAgpRGLAvD 196
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1705 ADGiafdwitrRIYYSDYLN---QMINsmAEDGSNRTVI--ARVPKPRAIVLDPcQGYLYWADWDTH--AKIERATLGGN 1777
Cdd:COG4257   197 PDG--------NLWVADTGSgriGRFD--PKTGTVTEYPlpGGGARPYGVAVDG-DGRVWFAESGANriVRFDPDTELTE 265

                  ....
gi 767918155 1778 FRVP 1781
Cdd:COG4257   266 YVLP 269
EGF_CA smart00179
Calcium-binding EGF-like domain;
3244-3284 8.00e-06

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 45.32  E-value: 8.00e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155   3244 DINECEQFGTCPQH--CRNTKGSYECVCADGFTSmsdrpGKRC 3284
Cdd:smart00179    1 DIDECASGNPCQNGgtCVNTVGSYRCECPPGYTD-----GRNC 38
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
33-186 8.13e-06

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 50.08  E-value: 8.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155   33 KNLYWTDSHYKSISVMRLADKTRRTVVQYLNNPRSVVVHPFAGYLFFTDWfrpakimrawsdGSHLLPVINTTLG----- 107
Cdd:COG3391    80 RRLYVANSGSGRVSVIDLATGKVVATIPVGGGPRGLAVDPDGGRLYVADS------------GNGRVSVIDTATGkvvat 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155  108 -----WPNGLAIDWAASRLYWVDAYFDKIEH--STFDGLDRRRLGHIEQMTHPFGLAI--FGEHLFFTDWRLGaiirvrK 178
Cdd:COG3391   148 ipvgaGPHGIAVDPDGKRLYVANSGSNTVSVivSVIDTATGKVVATIPVGGGPVGVAVspDGRRLYVANRGSN------T 221

                  ....*...
gi 767918155  179 ADGGEMTV 186
Cdd:COG3391   222 SNGGSNTV 229
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
424-456 8.76e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.93  E-value: 8.76e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155    424 CTASQFKCASGdKCIGVTNRCDGVFDCSDNSDE 456
Cdd:smart00192    2 CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2919-2948 1.01e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.93  E-value: 1.01e-05
                            10        20        30
                    ....*....|....*....|....*....|
gi 767918155   2919 TEFSCKtNYRCIPKWAVCNGVDDCRDNSDE 2948
Cdd:smart00192    5 GEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
467-501 1.11e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.93  E-value: 1.11e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 767918155   467 CHSDEFQCQeDGICIPNFWECDGHPDCLYGSDEHN 501
Cdd:pfam00057    3 CSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDEEN 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1583-1619 1.19e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 44.54  E-value: 1.19e-05
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 767918155  1583 CLENNGGCSHLCFALPGLHTpkCDCAFG-TLQSDGKNC 1619
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYT--CSCPEGyELQDDGRTC 36
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2021-2051 1.47e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.16  E-value: 1.47e-05
                            10        20        30
                    ....*....|....*....|....*....|.
gi 767918155   2021 TEFMCNNRRCIPREFICNGVDNCHDNntSDE 2051
Cdd:smart00192    5 GEFQCDNGRCIPSSWVCDGVDDCGDG--SDE 33
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
2384-2427 1.74e-05

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 48.92  E-value: 1.74e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 767918155 2384 KRTCVDIDECTEMPFVCSQKCENVIGSYICKCAPGYLREPDGKT 2427
Cdd:cd01475   181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2185-2225 2.02e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.16  E-value: 2.02e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 767918155  2185 CSDSEFLCvndrpPDRRCIPQSWVCDGDVDCTDGYDEnQNC 2225
Cdd:pfam00057    3 CSPNEFQC-----GSGECIPRSWVCDGDPDCGDGSDE-ENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2059-2092 2.14e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 43.73  E-value: 2.14e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 767918155 2059 CQSGYTKCHNSNiCIPRVYLCDGDNDCGDNSDEN 2092
Cdd:cd00112     1 CPPNEFRCANGR-CIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2749-2782 2.23e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 43.78  E-value: 2.23e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767918155  2749 CSSTQFLCANNEkCIPIWWKCDGQKDCSDGSDEL 2782
Cdd:pfam00057    3 CSPNEFQCGSGE-CIPRSWVCDGDPDCGDGSDEE 35
EGF_CA smart00179
Calcium-binding EGF-like domain;
627-666 3.22e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 43.39  E-value: 3.22e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155    627 DIDECDILGSCSQH--CYNMRGSFRCSCDTGYmleSDGRTCK 666
Cdd:smart00179    1 DIDECASGNPCQNGgtCVNTVGSYRCECPPGY---TDGRNCE 39
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
2371-2392 3.30e-05

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 43.17  E-value: 3.30e-05
                           10        20
                   ....*....|....*....|..
gi 767918155  2371 YCSCRPGYKLMSDKRTCVDIDE 2392
Cdd:pfam12662    1 TCSCPPGYQLDPDGRTCVDIDE 22
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1439-1479 4.42e-05

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 43.30  E-value: 4.42e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 767918155  1439 RYLFWADYGQRPKIERSFLDCTNRTVLVSEGIVTPRGLAVD 1479
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVD 41
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2057-2091 4.48e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 43.01  E-value: 4.48e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 767918155  2057 RTCQSGYTKCHnSNICIPRVYLCDGDNDCGDNSDE 2091
Cdd:pfam00057    1 STCSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDE 34
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
3244-3284 4.89e-05

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 43.01  E-value: 4.89e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 767918155 3244 DINECEQFGTCPQH--CRNTKGSYECVCADGFTsmsdrpGKRC 3284
Cdd:cd00054     1 DIDECASGNPCQNGgtCVNTVGSYRCSCPPGYT------GRNC 37
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
635-665 5.25e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 43.00  E-value: 5.25e-05
                           10        20        30
                   ....*....|....*....|....*....|.
gi 767918155   635 GSCSQHCYNMRGSFRCSCDTGYMLESDGRTC 665
Cdd:pfam14670    6 GGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2790-2821 9.98e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 41.85  E-value: 9.98e-05
                            10        20        30
                    ....*....|....*....|....*....|..
gi 767918155   2790 CRLGQFQCSDGNCTSPQTLCNAHQNCPDGSDE 2821
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1331-1447 1.03e-04

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 47.00  E-value: 1.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1331 GRNALHVDVDVSSGFIYWCDFSssvasDNAIRRIKPDGSSLMNIVTHGigeNGVRGIAVDWVAGNLYFTNAFVSETLIEV 1410
Cdd:COG3391   109 GGGPRGLAVDPDGGRLYVADSG-----NGRVSVIDTATGKVVATIPVG---AGPHGIAVDPDGKRLYVANSGSNTVSVIV 180
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 767918155 1411 LRINTTYRRVLLKVTV-DMPRHIVVDPKNRYLFWADYG 1447
Cdd:COG3391   181 SVIDTATGKVVATIPVgGGPVGVAVSPDGRRLYVANRG 218
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1380-1551 1.13e-04

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 46.94  E-value: 1.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1380 GENGVRGIAVDwVAGNLYFTNAFVSEtlIEVLRINTTYRRVLLKVTVDMPRHIVVDPKNRyLFWADYGQRpKIERsfLDC 1459
Cdd:COG4257    15 PGSGPRDVAVD-PDGAVWFTDQGGGR--IGRLDPATGEFTEYPLGGGSGPHGIAVDPDGN-LWFTDNGNN-RIGR--IDP 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1460 TN---RTVLVSEGIVTPRGLAVDrSDGYVYWVDDSLDIIARIRINGENSEVIRYGSRYPTPYGITVFENSIIWV----DR 1532
Cdd:COG4257    88 KTgeiTTFALPGGGSNPHGIAFD-PDGNLWFTDQGGNRIGRLDPATGEVTEFPLPTGGAGPYGIAVDPDGNLWVtdfgAN 166
                         170
                  ....*....|....*....
gi 767918155 1533 NLKKIFQASKEPENTEPPT 1551
Cdd:COG4257   167 AIGRIDPDTGTLTEYALPT 185
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2614-2654 1.67e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 41.38  E-value: 1.67e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 767918155  2614 DLLYWADAHLGY-IEYSDLEGHHRHTVYDGALPHPFAITIFE 2654
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
5-130 1.98e-04

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 45.84  E-value: 1.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155    5 QKIDGTGREILAANRV-ENVESLAFDWISKNLYWTDSHYKSISVMRLADKTRRTVVQYLNNPRSVVVHPFAGYLFFTDWF 83
Cdd:COG3391    93 SVIDLATGKVVATIPVgGGPRGLAVDPDGGRLYVADSGNGRVSVIDTATGKVVATIPVGAGPHGIAVDPDGKRLYVANSG 172
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 767918155   84 RP--AKIMRAW--SDGShllpVINT--TLGWPNGLAIDWAASRLYWVDAYFDK 130
Cdd:COG3391   173 SNtvSVIVSVIdtATGK----VVATipVGGGPVGVAVSPDGRRLYVANRGSNT 221
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2645-2678 2.04e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 41.43  E-value: 2.04e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 767918155   2645 PHPFAITIFEDTIYWTDWNTRTVEKgNKYDGSNR 2678
Cdd:smart00135   11 PNGLAVDWIEGRLYWTDWGLDVIEV-ANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
55-97 2.25e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 41.05  E-value: 2.25e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 767918155     55 RRTVVQYLNNPRSVVVHPFAGYLFFTDWFRPaKIMRAWSDGSH 97
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLD-VIEVANLDGTN 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3122-3157 2.31e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 41.08  E-value: 2.31e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155  3122 SPNRFRCDNNRCIYSHEVCNGVDDCGDGTDetEEHC 3157
Cdd:pfam00057    4 SPNEFQCGSGECIPRSWVCDGDPDCGDGSD--EENC 37
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
2519-2671 2.44e-04

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 45.84  E-value: 2.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 2519 RKLYWLDARLDGLFVSDLNGGhrRMLAQHCVDanntfcfDNPRGLALHPQYGYLYWADWG-HRAYIgrvgMDGTNKSVII 2597
Cdd:COG3391    80 RRLYVANSGSGRVSVIDLATG--KVVATIPVG-------GGPRGLAVDPDGGRLYVADSGnGRVSV----IDTATGKVVA 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 2598 STKL-EWPNGITIDYTNDLLYWADAHLGYIeyS------DLE-GHHRHTVYDGALPHPFAITIFEDTIYWTDWNTRTVEK 2669
Cdd:COG3391   147 TIPVgAGPHGIAVDPDGKRLYVANSGSNTV--SvivsviDTAtGKVVATIPVGGGPVGVAVSPDGRRLYVANRGSNTSNG 224

                  ..
gi 767918155 2670 GN 2671
Cdd:COG3391   225 GS 226
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2706-2735 2.84e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 40.69  E-value: 2.84e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 767918155  2706 CGTNNGGCSHLCLIKPGgkGFTCECPDDFR 2735
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG--GYTCSCPEGYE 28
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2790-2822 3.15e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.65  E-value: 3.15e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155 2790 CRLGQFQCSDGNCTSPQTLCNAHQNCPDGSDED 2822
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2022-2054 3.81e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.31  E-value: 3.81e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767918155  2022 EFMCNNRRCIPREFICNGVDNCHDNntSDEKNC 2054
Cdd:pfam00057    7 EFQCGSGECIPRSWVCDGDPDCGDG--SDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2920-2951 4.04e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.31  E-value: 4.04e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 767918155  2920 EFSCKTNyRCIPKWAVCNGVDDCRDNSDEQGC 2951
Cdd:pfam00057    7 EFQCGSG-ECIPRSWVCDGDPDCGDGSDEENC 37
EGF_CA smart00179
Calcium-binding EGF-like domain;
2389-2428 5.00e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 40.31  E-value: 5.00e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 767918155   2389 DIDECTEMPfVCSQ--KCENVIGSYICKCAPGYLrepDGKTC 2428
Cdd:smart00179    1 DIDECASGN-PCQNggTCVNTVGSYRCECPPGYT---DGRNC 38
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
627-666 5.59e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 39.93  E-value: 5.59e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 767918155  627 DIDECDILGSCSQH--CYNMRGSFRCSCDTGYMlesdGRTCK 666
Cdd:cd00054     1 DIDECASGNPCQNGgtCVNTVGSYRCSCPPGYT----GRNCE 38
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
3356-3491 5.79e-04

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 45.00  E-value: 5.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 3356 YIPNFEsgrNNLVQEVDLKLKYVMQ-------------PDGIAVDWVGrHIYWSDVKNKRIEVAKLDGRY-RKW----LI 3417
Cdd:cd05819   116 YVADTG---NHRIQKFDPDGEFLTTfgsggsgpgqfngPTGVAVDSDG-NIYVADTGNHRIQVFDPDGNFlTTFgstgTG 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 3418 STDLDQPAAIAVNPKlGLMFWTDWG-----KEPKIESAWM-NGEDRNilVFEDLGWPTGLSIDylNNDRIYWSDFKEDVI 3491
Cdd:cd05819   192 PGQFNYPTGIAVDSD-GNIYVADSGnnrvqVFDPDGAGFGgNGNFLG--SDGQFNRPSGLAVD--SDGNLYVADTGNNRI 266
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
548-581 6.02e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 39.92  E-value: 6.02e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 767918155    548 RCPSWQWQClGHNICVNLSVVCDGIFDCPNGTDE 581
Cdd:smart00192    1 TCPPGEFQC-DNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
424-459 6.48e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 39.92  E-value: 6.48e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 767918155   424 CTASQFKCASGdKCIGVTNRCDGVFDCSDNSDEAGC 459
Cdd:pfam00057    3 CSPNEFQCGSG-ECIPRSWVCDGDPDCGDGSDEENC 37
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
218-250 6.62e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 39.53  E-value: 6.62e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767918155   218 NGDCSHFCFPVPNfQRVCGCPYGMRLASNHLTC 250
Cdd:pfam14670    5 NGGCSHLCLNTPG-GYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1892-1929 9.52e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 39.15  E-value: 9.52e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 767918155  1892 CEQFNGGCSHICAPGPNGAECQCPHEgnWYLANNRKHC 1929
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEG--YELQDDGRTC 36
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
1024-1188 9.56e-04

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 44.11  E-value: 9.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1024 DAEQYIYWVENP-GEIHRVKTDGTNRTVFASISmvGPSMNLALD-----WI---SRNLYSTNPRTQSIEVLTLHGDIRYR 1094
Cdd:COG3386    16 DPDGRLYWVDIPgGRIHRYDPDGGAVEVFAEPS--GRPNGLAFDpdgrlLVadhGRGLVRFDPADGEVTVLADEYGKPLN 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1095 ktlIANDGtalgvgfpigiTVDPArGKLYWSDQGTDSGvPAKIASANMDGtSVKTLFTG----N-LehleCVTLDieEQK 1169
Cdd:COG3386    94 ---RPNDG-----------VVDPD-GRLYFTDMGEYLP-TGALYRVDPDG-SLRVLADGltfpNgI----AFSPD--GRT 150
                         170
                  ....*....|....*....
gi 767918155 1170 LYWAVTGRGVIERGNVDGT 1188
Cdd:COG3386   151 LYVADTGAGRIYRFDLDAD 169
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
1707-1812 1.04e-03

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 44.23  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1707 GIAFDwITRRIYYSDYLNQMI-------NSMAEDGSNRTVIARVPKPRAIVLDPcQGYLYWADWDTHA----KIERATLG 1775
Cdd:cd05819   153 GVAVD-SDGNIYVADTGNHRIqvfdpdgNFLTTFGSTGTGPGQFNYPTGIAVDS-DGNIYVADSGNNRvqvfDPDGAGFG 230
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 767918155 1776 GNFRVPIVNSSLVMPSGLTLDyEEDLLYWVDASLQRI 1812
Cdd:cd05819   231 GNGNFLGSDGQFNRPSGLAVD-SDGNLYVADTGNNRI 266
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
2556-2669 1.18e-03

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 43.85  E-value: 1.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 2556 CFDNPRGLALHPQyGYLYWAD-WGHR--------AYIGRVGMDGTNksviiSTKLEWPNGITIDYTNDlLYWADAHLGYI 2626
Cdd:cd05819     6 ELNNPQGIAVDSS-GNIYVADtGNNRiqvfdpdgNFITSFGSFGSG-----DGQFNEPAGVAVDSDGN-LYVADTGNHRI 78
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 767918155 2627 EYSDLEGHHRHTV-----YDGALPHPFAITI-FEDTIYWTDWNTRTVEK 2669
Cdd:cd05819    79 QKFDPDGNFLASFggsgdGDGEFNGPRGIAVdSSGNIYVADTGNHRIQK 127
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1654-1861 1.29e-03

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 43.53  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1654 VERTVMSLDYDSVSDRIYFTQNLASGVGQISYATLSSGIHTPTVIASGIGTADGIAFDWITRRIYYSDYLNQMINSMaeD 1733
Cdd:COG3391    19 AALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYVANSGSGRVSVI--D 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 1734 GSNRTVIARVP---KPRAIVLDPCQGYLYWADWDTHA--KIERATLGGNFRVPIVNSslvmPSGLTLDYEEDLLYWVDAS 1808
Cdd:COG3391    97 LATGKVVATIPvggGPRGLAVDPDGGRLYVADSGNGRvsVIDTATGKVVATIPVGAG----PHGIAVDPDGKRLYVANSG 172
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767918155 1809 -------LQRIERSTLTGVDReviVNAAVHAFGLTLY--GQYIYWTDLYTQriyRANKYDGS 1861
Cdd:COG3391   173 sntvsviVSVIDTATGKVVAT---IPVGGGPVGVAVSpdGRRLYVANRGSN---TSNGGSNT 228
EGF_CA pfam07645
Calcium-binding EGF domain;
3244-3272 1.44e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 38.76  E-value: 1.44e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 767918155  3244 DINECEQFGT-CPQ--HCRNTKGSYECVCADG 3272
Cdd:pfam07645    1 DVDECATGTHnCPAntVCVNTIGSFECRCPDG 32
EGF_CA pfam07645
Calcium-binding EGF domain;
2389-2418 1.77e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 38.37  E-value: 1.77e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 767918155  2389 DIDECTEMPFVCSQ--KCENVIGSYICKCAPG 2418
Cdd:pfam07645    1 DVDECATGTHNCPAntVCVNTIGSFECRCPDG 32
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2400-2428 2.35e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 37.99  E-value: 2.35e-03
                           10        20
                   ....*....|....*....|....*....
gi 767918155  2400 CSQKCENVIGSYICKCAPGYLREPDGKTC 2428
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
NHL_like_5 cd14963
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
3378-3485 2.36e-03

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271333 [Multi-domain]  Cd Length: 268  Bit Score: 43.05  E-value: 2.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 3378 VMQPDGIAVDWVGRhIYWSDVKNKRIEVAKLDGRYRKWLISTDLDQ-----PAAIAVNPKLGLM-----------FWTDw 3441
Cdd:cd14963   147 LSYPNGIAVDEDGN-IYVADSGNGRIQVFDKNGKFIKELNGSPDGKsgfvnPRGIAVDPDGNLYvvdnlshrvyvFDEQ- 224
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 767918155 3442 GKEpkIESAWMNGEDRNILVFedlgwPTGLSIDylNNDRIYWSD 3485
Cdd:cd14963   225 GKE--LFTFGGRGKDDGQFNL-----PNGLFID--DDGRLYVTD 259
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
2531-2665 2.37e-03

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 43.08  E-value: 2.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 2531 LFVSDlNGGHRrmlaQHCVDANNTF------------CFDNPRGLALHPQyGYLYWADWG-HR--------AYIGRVGMD 2589
Cdd:cd05819   115 IYVAD-TGNHR----IQKFDPDGEFlttfgsggsgpgQFNGPTGVAVDSD-GNIYVADTGnHRiqvfdpdgNFLTTFGST 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 2590 GTNKSviistKLEWPNGITIDYtNDLLYWADAHLGYIEYSDLEGHHRHTVYDGALPH-----PFAITIFED-TIYWTD-W 2662
Cdd:cd05819   189 GTGPG-----QFNYPTGIAVDS-DGNIYVADSGNNRVQVFDPDGAGFGGNGNFLGSDgqfnrPSGLAVDSDgNLYVADtG 262

                  ...
gi 767918155 2663 NTR 2665
Cdd:cd05819   263 NNR 265
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
698-737 2.63e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 38.35  E-value: 2.63e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 767918155    698 LVENGSYIVAVDFDSISGRIFWSDATQGKTWSAFQNGTDR 737
Cdd:smart00135    4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
EGF_CA smart00179
Calcium-binding EGF-like domain;
2348-2388 2.64e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 38.00  E-value: 2.64e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 767918155   2348 INECHDPSISGCDHNCTDTLTSFYCSCRPGYklmSDKRTCV 2388
Cdd:smart00179    2 IDECASGNPCQNGGTCVNTVGSYRCECPPGY---TDGRNCE 39
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1374-1418 3.57e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 37.97  E-value: 3.57e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 767918155   1374 IVTHGIGEngVRGIAVDWVAGNLYFTNAfvSETLIEVLRINTTYR 1418
Cdd:smart00135    3 LLSSGLGH--PNGLAVDWIEGRLYWTDW--GLDVIEVANLDGTNR 43
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
3575-3593 4.88e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 37.22  E-value: 4.88e-03
                           10
                   ....*....|....*....
gi 767918155  3575 CSHLCLLRPGGYSCACPQG 3593
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEG 26
NHL_like_5 cd14963
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
3374-3540 5.01e-03

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271333 [Multi-domain]  Cd Length: 268  Bit Score: 41.89  E-value: 5.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 3374 KLKYvmqPDGIAVDWVGRhIYWSDVKNKRIEVAKLDGRYRKWLISTD----LDQPAAIAVnpKLGLMFWTDWGKEpKIES 3449
Cdd:cd14963    54 EFKY---PYGIAVDSDGN-IYVADLYNGRIQVFDPDGKFLKYFPEKKdrvkLISPAGLAI--DDGKLYVSDVKKH-KVIV 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 3450 AWMNGEdrNILVF-------EDLGWPTGLSID-----YL---NNDRIYWSDFKEDVIETIKYDGTD-------RRVIAKE 3507
Cdd:cd14963   127 FDLEGK--LLLEFgkpgsepGELSYPNGIAVDedgniYVadsGNGRIQVFDKNGKFIKELNGSPDGksgfvnpRGIAVDP 204
                         170       180       190
                  ....*....|....*....|....*....|...
gi 767918155 3508 AMNPYSLDIFEDQLYWISKEKGEVWKQNKFGQG 3540
Cdd:cd14963   205 DGNLYVVDNLSHRVYVFDEQGKELFTFGGRGKD 237
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
3380-3497 5.12e-03

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 41.92  E-value: 5.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767918155 3380 QPDGIAVDWVGrHIYWSDVKNKRIEVAKLDGRYrKWLISTD------LDQPAAIAVNPKlGLMFWTD--------WGKEP 3445
Cdd:cd05819     9 NPQGIAVDSSG-NIYVADTGNNRIQVFDPDGNF-ITSFGSFgsgdgqFNEPAGVAVDSD-GNLYVADtgnhriqkFDPDG 85
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 767918155 3446 KIESAW-MNGEDrnilvFEDLGWPTGLSIDylNNDRIYWSDFKEDVIetIKYD 3497
Cdd:cd05819    86 NFLASFgGSGDG-----DGEFNGPRGIAVD--SSGNIYVADTGNHRI--QKFD 129
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1830-1862 5.18e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 37.20  E-value: 5.18e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 767918155   1830 VHAFGLTLYGQYIYWTDLYTQRIYRANkYDGSG 1862
Cdd:smart00135   11 PNGLAVDWIEGRLYWTDWGLDVIEVAN-LDGTN 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1048-1092 7.03e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 37.20  E-value: 7.03e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 767918155   1048 RTVFASisMVGPSMNLALDWISRNLYSTNPRTQSIEVLTLHGDIR 1092
Cdd:smart00135    1 RTLLSS--GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
549-581 9.46e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 36.42  E-value: 9.46e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767918155  549 CPSWQWQClGHNICVNLSVVCDGIFDCPNGTDE 581
Cdd:cd00112     1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDE 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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