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Conserved domains on  [gi|767919830|ref|XP_011510173|]
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tetratricopeptide repeat protein 21B isoform X3 [Homo sapiens]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 19960403)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
63-799 1.48e-30

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 130.20  E-value: 1.48e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830    63 LERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFI-QCQLIEGQLQDADQQLEFLNEIQQsi 141
Cdd:TIGR02917   79 LRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQALAIDP-- 156
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   142 gKSAELIYLHAVLAMKKNkRQEEVINLLNDVLDTHFSQLEGLPLGIQY-FEKLNPDFLLEIVMEYLSFCPMQPAspgqpl 220
Cdd:TIGR02917  157 -RSLYAKLGLAQLALAEN-RFDEARALIDEVLTADPGNVDALLLKGDLlLSLGNIELALAAYRKAIALRPNNIA------ 228
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   221 cPLLRRCISVL------------ETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLS 288
Cdd:TIGR02917  229 -VLLALATILIeagefeeaekhaDALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   289 QEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAmslpgmkrigastkskDRKTEVDTSHRLS 368
Cdd:TIGR02917  308 LGNLEQAYQYLNQILKYA---PNSHQARRLLASIQLRLGRVDEAIATLSPA----------------LGLDPDDPAALSL 368
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   369 IFLELIDvhrlNGEQHEATKVLQDAihefsgTSEEVRVTIANADLA---LAQGDIERALSILQNVTAEQPYFIEAREKMA 445
Cdd:TIGR02917  369 LGEAYLA----LGDFEKAAEYLAKA------TELDPENAAARTQLGiskLSQGDPSEAIADLETAAQLDPELGRADLLLI 438
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   446 DIYLK-HRKDKMLYITcfREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYS 523
Cdd:TIGR02917  439 LSYLRsGQFDKALAAA--KKLEKKQpDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   524 MAITYYEAALKTGQKNY-LCYDLAELLLK-------LKWYDKA--------EKVLQHALAHEPVNELS---ALMED---- 580
Cdd:TIGR02917  517 DAIQRFEKVLTIDPKNLrAILALAGLYLRtgneeeaVAWLEKAaelnpqeiEPALALAQYYLGKGQLKkalAILNEaada 596
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   581 -----------GRCQ---------------------------VLLAKVYSKMEKLGDAITALQQARELQA--RVLKRVQM 620
Cdd:TIGR02917  597 apdspeawlmlGRAQlaagdlnkavssfkkllalqpdsalalLLLADAYAVMKNYAKAITSLKRALELKPdnTEAQIGLA 676
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   621 ------EQPDA-------VPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLeLARLYLAQDDPDSC 687
Cdd:TIGR02917  677 qlllaaKRTESakkiaksLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEA 755
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   688 LRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLrrcGKLEDvPRFFSMAEKRNS 767
Cdd:TIGR02917  756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY---LELKD-PRALEYAERALK 831
                          810       820       830
                   ....*....|....*....|....*....|..
gi 767919830   768 RAKLEPGFQYCKGLYLWYTGEPNDALRHFNKA 799
Cdd:TIGR02917  832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
672-1004 3.10e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.16  E-value: 3.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  672 LELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRcgk 751
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK--- 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  752 ledvprffsmaekrnsraklepgfqyckglylwyTGEPNDALRHFNKARKDRDWGQNALYNMIEIClnpdnetvggevfe 831
Cdd:COG2956    89 ----------------------------------AGLLDRAEELLEKLLELDPDDAEALRLLAEIY-------------- 120
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  832 nldgdlgnstEKQESVQLAVRTAEKLLKeLKPQTVQGHVQLRimenyclMATKQKSNVEQALNTFTEIAASEKEHIPALL 911
Cdd:COG2956   121 ----------EQEGDWEKAIEVLERLLK-LGPENAHAYCELA-------ELYLEQGDYDEAIEALEKALKLDPDCARALL 182
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  912 GMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIM 991
Cdd:COG2956   183 LLAELYLEQGDYEEAIAALERALEQDPDYLPA------LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE 256
                         330
                  ....*....|...
gi 767919830  992 EKEQAytDAALNY 1004
Cdd:COG2956   257 RKEGL--EAALAL 267
 
Name Accession Description Interval E-value
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
63-799 1.48e-30

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 130.20  E-value: 1.48e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830    63 LERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFI-QCQLIEGQLQDADQQLEFLNEIQQsi 141
Cdd:TIGR02917   79 LRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQALAIDP-- 156
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   142 gKSAELIYLHAVLAMKKNkRQEEVINLLNDVLDTHFSQLEGLPLGIQY-FEKLNPDFLLEIVMEYLSFCPMQPAspgqpl 220
Cdd:TIGR02917  157 -RSLYAKLGLAQLALAEN-RFDEARALIDEVLTADPGNVDALLLKGDLlLSLGNIELALAAYRKAIALRPNNIA------ 228
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   221 cPLLRRCISVL------------ETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLS 288
Cdd:TIGR02917  229 -VLLALATILIeagefeeaekhaDALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   289 QEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAmslpgmkrigastkskDRKTEVDTSHRLS 368
Cdd:TIGR02917  308 LGNLEQAYQYLNQILKYA---PNSHQARRLLASIQLRLGRVDEAIATLSPA----------------LGLDPDDPAALSL 368
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   369 IFLELIDvhrlNGEQHEATKVLQDAihefsgTSEEVRVTIANADLA---LAQGDIERALSILQNVTAEQPYFIEAREKMA 445
Cdd:TIGR02917  369 LGEAYLA----LGDFEKAAEYLAKA------TELDPENAAARTQLGiskLSQGDPSEAIADLETAAQLDPELGRADLLLI 438
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   446 DIYLK-HRKDKMLYITcfREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYS 523
Cdd:TIGR02917  439 LSYLRsGQFDKALAAA--KKLEKKQpDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   524 MAITYYEAALKTGQKNY-LCYDLAELLLK-------LKWYDKA--------EKVLQHALAHEPVNELS---ALMED---- 580
Cdd:TIGR02917  517 DAIQRFEKVLTIDPKNLrAILALAGLYLRtgneeeaVAWLEKAaelnpqeiEPALALAQYYLGKGQLKkalAILNEaada 596
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   581 -----------GRCQ---------------------------VLLAKVYSKMEKLGDAITALQQARELQA--RVLKRVQM 620
Cdd:TIGR02917  597 apdspeawlmlGRAQlaagdlnkavssfkkllalqpdsalalLLLADAYAVMKNYAKAITSLKRALELKPdnTEAQIGLA 676
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   621 ------EQPDA-------VPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLeLARLYLAQDDPDSC 687
Cdd:TIGR02917  677 qlllaaKRTESakkiaksLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEA 755
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   688 LRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLrrcGKLEDvPRFFSMAEKRNS 767
Cdd:TIGR02917  756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY---LELKD-PRALEYAERALK 831
                          810       820       830
                   ....*....|....*....|....*....|..
gi 767919830   768 RAKLEPGFQYCKGLYLWYTGEPNDALRHFNKA 799
Cdd:TIGR02917  832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
474-766 7.86e-26

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 108.28  E-value: 7.86e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  474 SFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK-TGQKNYLCYDLAELLLKL 552
Cdd:COG2956    10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLErDPDRAEALLELAQDYLKA 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  553 KWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQARvlkrvqmeqpdavpaqkhl 632
Cdd:COG2956    90 GLLDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------------------- 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  633 AAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLM 712
Cdd:COG2956   143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 767919830  713 FRKQDYEQAVFHLQQLLERKPDNYMTLsRLIDLLRRCGKLEDVPRFFSMAEKRN 766
Cdd:COG2956   223 EKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
672-1004 3.10e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.16  E-value: 3.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  672 LELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRcgk 751
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK--- 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  752 ledvprffsmaekrnsraklepgfqyckglylwyTGEPNDALRHFNKARKDRDWGQNALYNMIEIClnpdnetvggevfe 831
Cdd:COG2956    89 ----------------------------------AGLLDRAEELLEKLLELDPDDAEALRLLAEIY-------------- 120
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  832 nldgdlgnstEKQESVQLAVRTAEKLLKeLKPQTVQGHVQLRimenyclMATKQKSNVEQALNTFTEIAASEKEHIPALL 911
Cdd:COG2956   121 ----------EQEGDWEKAIEVLERLLK-LGPENAHAYCELA-------ELYLEQGDYDEAIEALEKALKLDPDCARALL 182
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  912 GMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIM 991
Cdd:COG2956   183 LLAELYLEQGDYEEAIAALERALEQDPDYLPA------LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE 256
                         330
                  ....*....|...
gi 767919830  992 EKEQAytDAALNY 1004
Cdd:COG2956   257 RKEGL--EAALAL 267
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
376-797 1.13e-10

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 65.87  E-value: 1.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  376 VHRLNGEQHEATKVLQdAIHEFSGTSEEVRVTIANadLALAQGDIERALSILQNVtAEQPyfiEAREKMADIYLKHRKDK 455
Cdd:PRK11447  156 VAKLPAQRPEAINQLQ-RLNADYPGNTGLRNTLAL--LLFSSGRRDEGFAVLEQM-AKSP---AGRDAAAQLWYGQIKDM 228
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  456 ML----------YITCFREiAERMANPRSFL-----LLGD-AYMNILE---------PEEAIVAYEQALNQNPKDGTLAS 510
Cdd:PRK11447  229 PVsdasvaalqkYLQVFSD-GDSVAAARSQLaeqqkQLADpAFRARAQglaavdsgqGGKAIPELQQAVRANPKDSEALG 307
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  511 KMGKALIKTHNYSMAITYYEAALKTGQKNYlcydlaelllklkWYDKAEKVLQhalahepVNELSALMEDGRcQVLLAKV 590
Cdd:PRK11447  308 ALGQAYSQQGDRARAVAQFEKALALDPHSS-------------NRDKWESLLK-------VNRYWLLIQQGD-AALKANN 366
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  591 YSKMEKLgdaitaLQQARelqarvlkrvQMEQPDAvpaqkhLAAEICAEIAkhsVAQRDYEKAIKFYREALvHCETDNKI 670
Cdd:PRK11447  367 LAQAERL------YQQAR----------QVDNTDS------YAVLGLGDVA---MARKDYAAAERYYQQAL-RMDPGNTN 420
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  671 MLE-LARLYLAQDdPDSCLRQCALLLQSDQ----DNEAATMM-----MADLMFRKQDYEQAVFHLQQLLERKPDNYMTLS 740
Cdd:PRK11447  421 AVRgLANLYRQQS-PEKALAFIASLSASQRrsidDIERSLQNdrlaqQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830  741 RLIDLLRRCGKLEDVPRFFSMAEKRNSRaklEPGFQYCKGLYLWYTGEPNDALRHFN 797
Cdd:PRK11447  500 RLAQDLRQAGQRSQADALMRRLAQQKPN---DPEQVYAYGLYLSGSDRDRAALAHLN 553
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
634-800 1.10e-05

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 47.37  E-value: 1.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  634 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 713
Cdd:NF040959   37 AKMYRNKGISHAKKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALL 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  714 RKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAekrnsrAKLEPGF-QYCKGLYLWYT--GEPN 790
Cdd:NF040959  117 KIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKA------LELDPNEiKYHQAIGFMYVqkGDHE 190
                         170
                  ....*....|
gi 767919830  791 DALRHFNKAR 800
Cdd:NF040959  191 TAAEHFKKAM 200
TPR_19 pfam14559
Tetratricopeptide repeat;
255-321 1.63e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.95  E-value: 1.63e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830   255 SGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKlcsQSLELCLSYDFKVRDYPLYHLIKAQ 321
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLD---EAEALLAALPAADPDDPRYAALLAK 64
 
Name Accession Description Interval E-value
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
63-799 1.48e-30

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 130.20  E-value: 1.48e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830    63 LERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFI-QCQLIEGQLQDADQQLEFLNEIQQsi 141
Cdd:TIGR02917   79 LRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQALAIDP-- 156
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   142 gKSAELIYLHAVLAMKKNkRQEEVINLLNDVLDTHFSQLEGLPLGIQY-FEKLNPDFLLEIVMEYLSFCPMQPAspgqpl 220
Cdd:TIGR02917  157 -RSLYAKLGLAQLALAEN-RFDEARALIDEVLTADPGNVDALLLKGDLlLSLGNIELALAAYRKAIALRPNNIA------ 228
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   221 cPLLRRCISVL------------ETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLS 288
Cdd:TIGR02917  229 -VLLALATILIeagefeeaekhaDALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   289 QEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAmslpgmkrigastkskDRKTEVDTSHRLS 368
Cdd:TIGR02917  308 LGNLEQAYQYLNQILKYA---PNSHQARRLLASIQLRLGRVDEAIATLSPA----------------LGLDPDDPAALSL 368
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   369 IFLELIDvhrlNGEQHEATKVLQDAihefsgTSEEVRVTIANADLA---LAQGDIERALSILQNVTAEQPYFIEAREKMA 445
Cdd:TIGR02917  369 LGEAYLA----LGDFEKAAEYLAKA------TELDPENAAARTQLGiskLSQGDPSEAIADLETAAQLDPELGRADLLLI 438
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   446 DIYLK-HRKDKMLYITcfREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYS 523
Cdd:TIGR02917  439 LSYLRsGQFDKALAAA--KKLEKKQpDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   524 MAITYYEAALKTGQKNY-LCYDLAELLLK-------LKWYDKA--------EKVLQHALAHEPVNELS---ALMED---- 580
Cdd:TIGR02917  517 DAIQRFEKVLTIDPKNLrAILALAGLYLRtgneeeaVAWLEKAaelnpqeiEPALALAQYYLGKGQLKkalAILNEaada 596
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   581 -----------GRCQ---------------------------VLLAKVYSKMEKLGDAITALQQARELQA--RVLKRVQM 620
Cdd:TIGR02917  597 apdspeawlmlGRAQlaagdlnkavssfkkllalqpdsalalLLLADAYAVMKNYAKAITSLKRALELKPdnTEAQIGLA 676
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   621 ------EQPDA-------VPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLeLARLYLAQDDPDSC 687
Cdd:TIGR02917  677 qlllaaKRTESakkiaksLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEA 755
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   688 LRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLrrcGKLEDvPRFFSMAEKRNS 767
Cdd:TIGR02917  756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY---LELKD-PRALEYAERALK 831
                          810       820       830
                   ....*....|....*....|....*....|..
gi 767919830   768 RAKLEPGFQYCKGLYLWYTGEPNDALRHFNKA 799
Cdd:TIGR02917  832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
474-766 7.86e-26

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 108.28  E-value: 7.86e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  474 SFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK-TGQKNYLCYDLAELLLKL 552
Cdd:COG2956    10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLErDPDRAEALLELAQDYLKA 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  553 KWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQARvlkrvqmeqpdavpaqkhl 632
Cdd:COG2956    90 GLLDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------------------- 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  633 AAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLM 712
Cdd:COG2956   143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 767919830  713 FRKQDYEQAVFHLQQLLERKPDNYMTLsRLIDLLRRCGKLEDVPRFFSMAEKRN 766
Cdd:COG2956   223 EKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLRRH 275
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
249-1053 1.28e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 91.68  E-value: 1.28e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   249 AKVKYLS-GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLElclsydfkvrdyplyhliKAQSQKkmg 327
Cdd:TIGR02917   28 AAKSYLQkNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELR------------------KALSLG--- 86
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   328 eiadaiktLHMAMSLPGMKRIGASTKSKDR------KTEVDTSHRLSIFLELI-DVHRLNGEQHEATKVLQDAIhEFSGT 400
Cdd:TIGR02917   87 --------YPKNQVLPLLARAYLLQGKFQQvldelpGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQAL-AIDPR 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   401 SEEVRvtIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADiYLKHRKDKMLYITCFREIAE-RMANPRSFLLLG 479
Cdd:TIGR02917  158 SLYAK--LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD-LLLSLGNIELALAAYRKAIAlRPNNIAVLLALA 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   480 DAYMNILEPEEAIVAYEQALNQNPKdgTLASKMGKALI--KTHNYSMAITYYEAALKTGQKNYLCYDLAEL-LLKLKWYD 556
Cdd:TIGR02917  235 TILIEAGEFEEAEKHADALLKKAPN--SPLAHYLKALVdfQKKNYEDARETLQDALKSAPEYLPALLLAGAsEYQLGNLE 312
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   557 KAEKVLQHALAHEPVNELSALMedgrcqvlLAKVYSKMEKLGDAITALQQARELQAR------VLKRVQMEQPDAVPAQK 630
Cdd:TIGR02917  313 QAYQYLNQILKYAPNSHQARRL--------LASIQLRLGRVDEAIATLSPALGLDPDdpaalsLLGEAYLALGDFEKAAE 384
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   631 HL--AAEICAEIAKHS-------VAQRDYEKAIKFYREALvhcETDNKIM---LELARLYLAQDDPDSCLRQCALLLQSD 698
Cdd:TIGR02917  385 YLakATELDPENAAARtqlgiskLSQGDPSEAIADLETAA---QLDPELGradLLLILSYLRSGQFDKALAAAKKLEKKQ 461
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   699 QDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNsrAKLEPGFQYC 778
Cdd:TIGR02917  462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILAL 539
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   779 KGLYLwYTGEPNDALRHFNKARKdrdwgqnalynmieicLNPDNEtvggevfeNLDGDLGNSTEKQESVQLAVRTAEKLL 858
Cdd:TIGR02917  540 AGLYL-RTGNEEEAVAWLEKAAE----------------LNPQEI--------EPALALAQYYLGKGQLKKALAILNEAA 594
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   859 KeLKPQTVQGHVQLrimenycLMATKQKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRiaKMNW 938
Cdd:TIGR02917  595 D-AAPDSPEAWLML-------GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR--ALEL 664
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   939 NaidaEEFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYSNRTNPAV 1018
Cdd:TIGR02917  665 K----PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI 740
                          810       820       830
                   ....*....|....*....|....*....|....*
gi 767919830  1019 gyKLAFNYLKAKRYVDSIDICHQVLEAHPTYPKIR 1053
Cdd:TIGR02917  741 --KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
253-569 1.30e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.40  E-value: 1.30e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  253 YLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADA 332
Cdd:COG2956    19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLKAGLLDRA 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  333 IKTLHMAMSLPgmkrigastkskdrktevdtSHRLSIFLELIDVHRLNGEQHEATKVLQDAIHEfsgTSEEVRVTIANAD 412
Cdd:COG2956    96 EELLEKLLELD--------------------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL---GPENAHAYCELAE 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  413 LALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKdkmlyitcfreiaermanprsflllgdaymnilePEEAI 492
Cdd:COG2956   153 LYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGD----------------------------------YEEAI 198
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830  493 VAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEKVLQHALAHE 569
Cdd:COG2956   199 AALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
254-967 6.36e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 86.29  E-value: 6.36e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   254 LSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDFKVRDyplYHLIKAQSQKKMGEIADAI 333
Cdd:TIGR02917  137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD---ALLLKGDLLLSLGNIELAL 213
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   334 KTLHMAMSL-PG--MKRIGAST----KSKDRKTEVDTSHRLSIFLELIDVHRLNGEQHEATKVLQDAIHEF-----SGTS 401
Cdd:TIGR02917  214 AAYRKAIALrPNniAVLLALATilieAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLqdalkSAPE 293
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   402 EEVRVTIANAdLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYITCFREIAERMANPRSFLLLGDA 481
Cdd:TIGR02917  294 YLPALLLAGA-SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   482 YMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKtgqknyLCYDL--AELLL-----KLKW 554
Cdd:TIGR02917  373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ------LDPELgrADLLLilsylRSGQ 446
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   555 YDKAEKVLQHALAHEPVNELSalmedgrcQVLLAKVYSKMEKLGDAITALQQARELqarvlkrvqmeQPDAVPAQkhlaa 634
Cdd:TIGR02917  447 FDKALAAAKKLEKKQPDNASL--------HNLLGAIYLGKGDLAKAREAFEKALSI-----------EPDFFPAA----- 502
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   635 eicAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFR 714
Cdd:TIGR02917  503 ---ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG 579
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   715 KQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSraklepgfqyckglylwYTGEPNDALR 794
Cdd:TIGR02917  580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-----------------DSALALLLLA 642
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   795 HFNKARKDRDWGQNALYNMIEIclNPDNetvggEVFENLDGDLGNSTEKQESvqlavrtAEKLLKELKPQTVQGHVQLRI 874
Cdd:TIGR02917  643 DAYAVMKNYAKAITSLKRALEL--KPDN-----TEAQIGLAQLLLAAKRTES-------AKKIAKSLQKQHPKAALGFEL 708
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   875 mENYCLMATKQKSNVEQALNTFTEIAASEKehipALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAEefekswLLLA 954
Cdd:TIGR02917  709 -EGDLYLRQKDYPAAIQAYRKALKRAPSSQ----NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR------TALA 777
                          730
                   ....*....|...
gi 767919830   955 DIYIQSAKYDMAE 967
Cdd:TIGR02917  778 ELYLAQKDYDKAI 790
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
672-1004 3.10e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.16  E-value: 3.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  672 LELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRcgk 751
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK--- 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  752 ledvprffsmaekrnsraklepgfqyckglylwyTGEPNDALRHFNKARKDRDWGQNALYNMIEIClnpdnetvggevfe 831
Cdd:COG2956    89 ----------------------------------AGLLDRAEELLEKLLELDPDDAEALRLLAEIY-------------- 120
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  832 nldgdlgnstEKQESVQLAVRTAEKLLKeLKPQTVQGHVQLRimenyclMATKQKSNVEQALNTFTEIAASEKEHIPALL 911
Cdd:COG2956   121 ----------EQEGDWEKAIEVLERLLK-LGPENAHAYCELA-------ELYLEQGDYDEAIEALEKALKLDPDCARALL 182
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  912 GMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIM 991
Cdd:COG2956   183 LLAELYLEQGDYEEAIAALERALEQDPDYLPA------LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE 256
                         330
                  ....*....|...
gi 767919830  992 EKEQAytDAALNY 1004
Cdd:COG2956   257 RKEGL--EAALAL 267
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
31-705 5.19e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 83.21  E-value: 5.19e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830    31 EPQNAQLFYNITLAFSRTCGRSQLILQKIQ----------TLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTA 100
Cdd:TIGR02917  140 QLELAQKSYEQALAIDPRSLYAKLGLAQLAlaenrfdearALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKA 219
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   101 MTLDETSVSALVGFIQCQLIEGQLQDADQQLEflnEIQQSIGKSAELIYLHAVLAMKKnKRQEEVINLLNDVLDTHFSQL 180
Cdd:TIGR02917  220 IALRPNNIAVLLALATILIEAGEFEEAEKHAD---ALLKKAPNSPLAHYLKALVDFQK-KNYEDARETLQDALKSAPEYL 295
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   181 EGLPL-GIQYFEKLNPDFLLEIVMEYLSFCPMQPASPGQPLCPLLR--------RCISVLETVVRTVPGLL--------- 242
Cdd:TIGR02917  296 PALLLaGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRlgrvdeaiATLSPALGLDPDDPAALsllgeayla 375
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   243 -----QTVFLIAKVKYLS-----------------GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLE 300
Cdd:TIGR02917  376 lgdfeKAAEYLAKATELDpenaaartqlgisklsqGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK 455
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   301 lclSYDFKVRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL-PG-------MKRIGASTK----SKDRKTEVDTS--HR 366
Cdd:TIGR02917  456 ---KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIePDffpaaanLARIDIQEGnpddAIQRFEKVLTIdpKN 532
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   367 LSIFLELIDVHRLNGEQHEATKVLQDAIHEFSGT-------------------SEEVRVTIAN------------ADLAL 415
Cdd:TIGR02917  533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEiepalalaqyylgkgqlkkALAILNEAADaapdspeawlmlGRAQL 612
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   416 AQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYITCFREIAERMANPRSFLLLGDAYMNILEPEEAIVAY 495
Cdd:TIGR02917  613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   496 EQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEKVLQHALAHEPvnels 575
Cdd:TIGR02917  693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP----- 767
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   576 almEDGRCQVLLAKVYSKMEKLGDAITALQQARELqarvlkrvqmeQPDAVPAQKHLAaeicaeiakHSVAQRDYEKAIK 655
Cdd:TIGR02917  768 ---NDAVLRTALAELYLAQKDYDKAIKHYQTVVKK-----------APDNAVVLNNLA---------WLYLELKDPRALE 824
                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|
gi 767919830   656 FYREALVHCETDNKIMLELARLYLAQDDPDSCLRqcALLLQSDQDNEAAT 705
Cdd:TIGR02917  825 YAERALKLAPNIPAILDTLGWLLVEKGEADRALP--LLRKAVNIAPEAAA 872
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
228-502 6.40e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 76.31  E-value: 6.40e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  228 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDF 307
Cdd:COG2956    28 IDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDP 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  308 KVRDYpLYHLIKAQSQKKmgEIADAIKTLHMAMSLpgmkrigastkskdrktevdTSHRLSIFLELIDVHRLNGEQHEAT 387
Cdd:COG2956   108 DDAEA-LRLLAEIYEQEG--DWEKAIEVLERLLKL--------------------GPENAHAYCELAELYLEQGDYDEAI 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  388 KVLQDAIhefSGTSEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKhRKDKMLYITCFREIAE 467
Cdd:COG2956   165 EALEKAL---KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALE 240
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 767919830  468 RMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQN 502
Cdd:COG2956   241 LDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
476-613 3.56e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.61  E-value: 3.56e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  476 LLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKN-YLCYDLAELLLKLKW 554
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEpEARLNLGLALLKAGD 87
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 767919830  555 YDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQAR 613
Cdd:COG4783    88 YDEALALLEKALKLDP--------EHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
554-783 7.47e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.80  E-value: 7.47e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  554 WYDKAEKVLQHALAHEPVNELSALMEdgrcqvLLAKVYSKMEKLGDAITALQQARELQARVLKRVQMEQPDAVPAQKHLA 633
Cdd:COG3914     4 AALLALAALAAAALLAAAAAAELALA------AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  634 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 713
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  714 RKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAekrnsrAKLEPGFQYCKGLYL 783
Cdd:COG3914   158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA------LELDPDNADAHSNLL 221
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
459-682 1.97e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.19  E-value: 1.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  459 ITCFRE-IAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQ 537
Cdd:COG0457    28 IEDYEKaLELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  538 KNYLCYD-LAELLLKLKWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQARVLK 616
Cdd:COG0457   108 DDAEALYnLGLALLELGRYDEAIEAYERALELDP--------DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767919830  617 RVQMEQPDAVPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQD 682
Cdd:COG0457   180 AAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
481-807 4.02e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.49  E-value: 4.02e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  481 AYMNILEPEEAIVAYEQALNQNPKDGTLAskmgKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEK 560
Cdd:COG3914    24 AELALAAELEAAALAAALGLALLLLAALA----EAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALA 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  561 VLQHALAHEPvNELSALmedgrcqVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaeicaEI 640
Cdd:COG3914   100 LYRRALALNP-DNAEAL-------FNLGNLLLALGRLEEALAALRRALALN-----------PDFAEAYLNLG-----EA 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  641 AKHsvaQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQddpdsclrqcalllqsdqdneaatmmmadlmfrkQDYEQ 720
Cdd:COG3914   156 LRR---LGRLEEAIAALRRALELDPDNAEALNNLGNALQDL----------------------------------GRLEE 198
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  721 AVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFfsmaekRNSRAKLEPGFQYCKGLYLWYTGEpNDALRHFNKAR 800
Cdd:COG3914   199 AIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF------EELLAALARGPSELSPFALLYLPD-DDPAELLALAR 271

                  ....*..
gi 767919830  801 KdrdWGQ 807
Cdd:COG3914   272 A---WAQ 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
471-732 4.18e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.42  E-value: 4.18e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  471 NPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCY-DLAELL 549
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALnNLGLAL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  550 LKLKWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQ 629
Cdd:COG0457    87 QALGRYEEALEDYDKALELDP--------DDAEALYNLGLALLELGRYDEAIEAYERALELD-----------PDDADAL 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  630 KHLAAEICAeiakhsvaQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMA 709
Cdd:COG0457   148 YNLGIALEK--------LGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
                         250       260
                  ....*....|....*....|...
gi 767919830  710 DLMFRKQDYEQAVFHLQQLLERK 732
Cdd:COG0457   220 AELLLLALALLLALRLAALALYQ 242
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
408-1050 7.40e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 73.19  E-value: 7.40e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   408 IANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKH-------------------RKDKMLYIT-------C 461
Cdd:TIGR02917   26 IEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALgdyaaaekelrkalslgypKNQVLPLLArayllqgK 105
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   462 FREIAERMANPRS---------FLLLGDAYMNILEPEEAIVAYEQALNQNPKdgTLASKMGKALIKT--HNYSMAITYYE 530
Cdd:TIGR02917  106 FQQVLDELPGKTLlddegaaelLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALaeNRFDEARALID 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   531 AALKTGQKNYLCYDL-AELLLKLKWYDKAEKVLQHALAHEPVNELSALMEDGrcqVLL-AKVYSKMEKlgDAITALQQAR 608
Cdd:TIGR02917  184 EVLTADPGNVDALLLkGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT---ILIeAGEFEEAEK--HADALLKKAP 258
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   609 -ELQARVLK-RVQMEQPDAVPAQKHLAAEICAE----IAKH-----SVAQRDYEKAIKFYREALVHCETDNKIMLELARL 677
Cdd:TIGR02917  259 nSPLAHYLKaLVDFQKKNYEDARETLQDALKSApeylPALLlagasEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASI 338
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   678 YLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPR 757
Cdd:TIGR02917  339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   758 FFSMAEKRNS---RAKLEPGFQYC------KGLYL---WYTGEPNDALRHFNKA-----RKDRDWGQNALYNMIEIclNP 820
Cdd:TIGR02917  419 DLETAAQLDPelgRADLLLILSYLrsgqfdKALAAakkLEKKQPDNASLHNLLGaiylgKGDLAKAREAFEKALSI--EP 496
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   821 DNETVGGEvfenldgdLGNSTEKQESVQLAVRTAEKLLKELkPQTVQGHVQLRIMENyclmatkQKSNVEQALNTFTEIA 900
Cdd:TIGR02917  497 DFFPAAAN--------LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYL-------RTGNEEEAVAWLEKAA 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   901 ASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKmnwNAIDAEEFeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSC 980
Cdd:TIGR02917  561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD---AAPDSPEA---WLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767919830   981 CKAYEYMGYIMEKEQAYTDAALNYE--MAWKYSNRTNPAVgykLAFNYLKAKRYVDSIDICHQVLEAHPTYP 1050
Cdd:TIGR02917  635 ALALLLLADAYAVMKNYAKAITSLKraLELKPDNTEAQIG---LAQLLLAAKRTESAKKIAKSLQKQHPKAA 703
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
472-1048 1.80e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 71.65  E-value: 1.80e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   472 PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGtlaskmgkalikthnysmaityyEAalktgqkNYLcydLAELLLK 551
Cdd:TIGR02917   22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDA-----------------------EA-------RFL---LGKIYLA 68
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   552 LKWYDKAEKVLQHALahepvnelSALMEDGRCQVLLAKVYSKMEKLGDAITalqqarelqarvlkrvQMEQPDAVPAQkh 631
Cdd:TIGR02917   69 LGDYAAAEKELRKAL--------SLGYPKNQVLPLLARAYLLQGKFQQVLD----------------ELPGKTLLDDE-- 122
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   632 LAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADL 711
Cdd:TIGR02917  123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL 202
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   712 MFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPrffSMAEKRNSRAKLEPGFQYCKGLYLWYTGEPND 791
Cdd:TIGR02917  203 LLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAE---KHADALLKKAPNSPLAHYLKALVDFQKKNYED 279
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   792 ALRHFNKARKDRDWGQNALY--NMIEICLNpDNETVGGEVFENLDGDLGNSTEKQ--ESVQLAVRTAEKLLKELKP--QT 865
Cdd:TIGR02917  280 ARETLQDALKSAPEYLPALLlaGASEYQLG-NLEQAYQYLNQILKYAPNSHQARRllASIQLRLGRVDEAIATLSPalGL 358
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   866 VQGHVQLRIMENYCLMATKQksnVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAEe 945
Cdd:TIGR02917  359 DPDDPAALSLLGEAYLALGD---FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD- 434
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   946 fekswLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKySNRTNPAVGYKLAFN 1025
Cdd:TIGR02917  435 -----LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS-IEPDFFPAAANLARI 508
                          570       580
                   ....*....|....*....|...
gi 767919830  1026 YLKAKRYVDSIDICHQVLEAHPT 1048
Cdd:TIGR02917  509 DIQEGNPDDAIQRFEKVLTIDPK 531
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
401-570 7.33e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.06  E-value: 7.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  401 SEEVRVTIANADLALAQGDIERALSILQNVTAEQPYfiearekmadiylkhrkdkmlyitcfreiaermaNPRSFLLLGD 480
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD----------------------------------NPEAFALLGE 46
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  481 AYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYD-LAELLLKLKWYDKAE 559
Cdd:COG4783    47 ILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLrLARAYRALGRPDEAI 126
                         170
                  ....*....|.
gi 767919830  560 KVLQHALAHEP 570
Cdd:COG4783   127 AALEKALELDP 137
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
837-1047 9.46e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.68  E-value: 9.46e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  837 LGNSTEKQESVQLAVRTAEKLLkELKPQTVQGHVQLrimenyCLMATKQKsNVEQALNTFTEIAASEKEHIPALLGMATA 916
Cdd:COG2956    48 LGNLYRRRGEYDRAIRIHQKLL-ERDPDRAEALLEL------AQDYLKAG-LLDRAEELLEKLLELDPDDAEALRLLAEI 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  917 YMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQA 996
Cdd:COG2956   120 YEQEGDWEKAIEVLERLLKLGPENAHA------YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGD 193
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 767919830  997 YTDAALNYEMAWKySNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHP 1047
Cdd:COG2956   194 YEEAIAALERALE-QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
409-570 1.50e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 68.48  E-value: 1.50e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  409 ANADLALAQGDIERALSILQNVTAEQPYFIEAREkmadiyLKHRKDKMLYITCFREIAERM-ANPRSFLLLGDAYMNILE 487
Cdd:COG3914    54 AAAAALLALAAGEAAAAAAALLLLAALLELAALL------LQALGRYEEALALYRRALALNpDNAEALFNLGNLLLALGR 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  488 PEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK-TGQKNYLCYDLAELLLKLKWYDKAEKVLQHAL 566
Cdd:COG3914   128 LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALElDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207

                  ....
gi 767919830  567 AHEP 570
Cdd:COG3914   208 ELDP 211
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
471-579 2.16e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 62.33  E-value: 2.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  471 NPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLC-YDLAELL 549
Cdd:COG4235    16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAlYLLGLAA 95
                          90       100       110
                  ....*....|....*....|....*....|
gi 767919830  550 LKLKWYDKAEKVLQHALAHEPVNELSALME 579
Cdd:COG4235    96 FQQGDYAEAIAAWQKLLALLPADAPARLLE 125
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
376-797 1.13e-10

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 65.87  E-value: 1.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  376 VHRLNGEQHEATKVLQdAIHEFSGTSEEVRVTIANadLALAQGDIERALSILQNVtAEQPyfiEAREKMADIYLKHRKDK 455
Cdd:PRK11447  156 VAKLPAQRPEAINQLQ-RLNADYPGNTGLRNTLAL--LLFSSGRRDEGFAVLEQM-AKSP---AGRDAAAQLWYGQIKDM 228
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  456 ML----------YITCFREiAERMANPRSFL-----LLGD-AYMNILE---------PEEAIVAYEQALNQNPKDGTLAS 510
Cdd:PRK11447  229 PVsdasvaalqkYLQVFSD-GDSVAAARSQLaeqqkQLADpAFRARAQglaavdsgqGGKAIPELQQAVRANPKDSEALG 307
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  511 KMGKALIKTHNYSMAITYYEAALKTGQKNYlcydlaelllklkWYDKAEKVLQhalahepVNELSALMEDGRcQVLLAKV 590
Cdd:PRK11447  308 ALGQAYSQQGDRARAVAQFEKALALDPHSS-------------NRDKWESLLK-------VNRYWLLIQQGD-AALKANN 366
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  591 YSKMEKLgdaitaLQQARelqarvlkrvQMEQPDAvpaqkhLAAEICAEIAkhsVAQRDYEKAIKFYREALvHCETDNKI 670
Cdd:PRK11447  367 LAQAERL------YQQAR----------QVDNTDS------YAVLGLGDVA---MARKDYAAAERYYQQAL-RMDPGNTN 420
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  671 MLE-LARLYLAQDdPDSCLRQCALLLQSDQ----DNEAATMM-----MADLMFRKQDYEQAVFHLQQLLERKPDNYMTLS 740
Cdd:PRK11447  421 AVRgLANLYRQQS-PEKALAFIASLSASQRrsidDIERSLQNdrlaqQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830  741 RLIDLLRRCGKLEDVPRFFSMAEKRNSRaklEPGFQYCKGLYLWYTGEPNDALRHFN 797
Cdd:PRK11447  500 RLAQDLRQAGQRSQADALMRRLAQQKPN---DPEQVYAYGLYLSGSDRDRAALAHLN 553
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
850-1066 2.21e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.82  E-value: 2.21e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  850 AVRTAEKLLkELKPQTVQGHVQL-RIMEnyclmatkQKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARN 928
Cdd:COG2956    27 AIDLLEEAL-ELDPETVEAHLALgNLYR--------RRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  929 QLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAW 1008
Cdd:COG2956    98 LLEKLLELDPDDAEA------LRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 767919830 1009 KYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTYPKIRKDILDKARASLRP 1066
Cdd:COG2956   172 KL-DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
633-766 4.57e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 58.66  E-value: 4.57e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  633 AAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLM 712
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 767919830  713 FRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRN 766
Cdd:COG4783    83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
634-735 1.45e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.94  E-value: 1.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  634 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 713
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
                          90       100
                  ....*....|....*....|..
gi 767919830  714 RKQDYEQAVFHLQQLLERKPDN 735
Cdd:COG4235    97 QQGDYAEAIAAWQKLLALLPAD 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
671-801 1.87e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.12  E-value: 1.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  671 MLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCG 750
Cdd:COG4783     7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 767919830  751 KLEDVPRFFSMAEKRNSRaklEPGFQYCKGLYLWYTGEPNDALRHFNKARK 801
Cdd:COG4783    87 DYDEALALLEKALKLDPE---HPEAYLRLARAYRALGRPDEAIAALEKALE 134
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
80-534 4.40e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 60.87  E-value: 4.40e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830    80 LGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEflnEIQQSIGKSAELIYLHAVLAMKKN 159
Cdd:TIGR02917  471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE---KVLTIDPKNLRAILALAGLYLRTG 547
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   160 kRQEEVINLLNDVLDTHFSQLEGLPLGIQYFEKLNPdflleivmeylsfcpmqpaspgqplcplLRRCISVLETVVRTVP 239
Cdd:TIGR02917  548 -NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ----------------------------LKKALAILNEAADAAP 598
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   240 GLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIK 319
Cdd:TIGR02917  599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK---PDNTEAQIGL 675
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   320 AQSQKKMGEIADAIKTLHM--------AMSLPGMKRIGASTKS-KDRKTEVDTSHRLS----IFLELIDVHRLNGEQHEA 386
Cdd:TIGR02917  676 AQLLLAAKRTESAKKIAKSlqkqhpkaALGFELEGDLYLRQKDyPAAIQAYRKALKRApssqNAIKLHRALLASGNTAEA 755
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   387 TKVLQDAIHEfsgTSEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLyitcfrEIA 466
Cdd:TIGR02917  756 VKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRAL------EYA 826
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767919830   467 ERM-----ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK 534
Cdd:TIGR02917  827 ERAlklapNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
499-731 5.87e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.09  E-value: 5.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  499 LNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNY-LCYDLAELLLKLKWYDKAEKVLQHALAHEPvnelsal 577
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAeALYNLGLAYLRLGRYEEALADYEQALELDP------- 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  578 mEDGRCQVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaEICAEiakhsvaQRDYEKAIKFY 657
Cdd:COG0457    74 -DDAEALNNLGLALQALGRYEEALEDYDKALELD-----------PDDAEALYNLG-LALLE-------LGRYDEAIEAY 133
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767919830  658 REALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLER 731
Cdd:COG0457   134 ERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
587-777 7.06e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.71  E-value: 7.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  587 LAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaeicaeIAKHsvAQRDYEKAIKFYREALVHCET 666
Cdd:COG0457    14 LGLAYRRLGRYEEAIEDYEKALELD-----------PDDAEALYNLG------LAYL--RLGRYEEALADYEQALELDPD 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  667 DNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLL 746
Cdd:COG0457    75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
                         170       180       190
                  ....*....|....*....|....*....|.
gi 767919830  747 RRCGKLEDVPRFFSMAEKRNSRAKLEPGFQY 777
Cdd:COG0457   155 EKLGRYEEALELLEKLEAAALAALLAAALGE 185
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
376-609 1.35e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.94  E-value: 1.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  376 VHRLNGEQHEATKVLQDAIhEFSGTSEEVRVTIANAdlALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDK 455
Cdd:COG0457    17 AYRRLGRYEEAIEDYEKAL-ELDPDDAEALYNLGLA--YLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  456 MlYITCFRE-IAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK 534
Cdd:COG0457    94 E-ALEDYDKaLELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767919830  535 tgQKNYLCYDLAELLLKLKWYDKAEKVLQHALAHEPVNELSALMEDGRCQVLLAKVYSKMEKLGDAITALQQARE 609
Cdd:COG0457   173 --AALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
463-571 4.68e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.43  E-value: 4.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  463 REIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKN-YL 541
Cdd:COG5010    45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNpNA 124
                          90       100       110
                  ....*....|....*....|....*....|
gi 767919830  542 CYDLAELLLKLKWYDKAEKVLQHALAHEPV 571
Cdd:COG5010   125 YSNLAALLLSLGQDDEAKAALQRALGTSPL 154
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
481-570 6.87e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 51.32  E-value: 6.87e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  481 AYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEK 560
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
                          90
                  ....*....|
gi 767919830  561 VLQHALAHEP 570
Cdd:COG3063    81 YLERALELDP 90
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
648-758 7.00e-08

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 55.97  E-value: 7.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  648 RDYEKAIKFYREALVHCETDNKIML-----ELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAV 722
Cdd:PRK11788  155 KDWQKAIDVAERLEKLGGDSLRVEIahfycELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 767919830  723 FHLQQLLERKPDnYMTLsrLIDLLRRC-GKLEDVPRF 758
Cdd:PRK11788  235 EALERVEEQDPE-YLSE--VLPKLMECyQALGDEAEG 268
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
587-735 7.80e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.50  E-value: 7.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  587 LAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQkhlaaeicAEIAKHSVAQRDYEKAIKFYREALVHCET 666
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELD-----------PDNPEAF--------ALLGEILLQLGDLDEAIVLLHEALELDPD 70
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767919830  667 DNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDN 735
Cdd:COG4783    71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
890-1046 9.42e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 9.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  890 EQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDL 969
Cdd:COG0457    25 EEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA------LNNLGLALQALGRYEEALED 98
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830  970 LKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAH 1046
Cdd:COG0457    99 YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL-DPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
357-503 1.65e-07

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 54.81  E-value: 1.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  357 RKTEVDTSHRLSIFL-ELIDVHRLNGEQHEATKVLQDAIHEFSGTseeVRVTIANADLALAQGDIERALSILQNVTAEQP 435
Cdd:PRK11788  169 KLGGDSLRVEIAHFYcELAQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVEEQDP 245
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  436 -YFIEAREKMADIYLK-HRKDKmlYITCFREIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNP 503
Cdd:PRK11788  246 eYLSEVLPKLMECYQAlGDEAE--GLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
422-552 2.96e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.39  E-value: 2.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  422 RALSILQNVTAEQPYFIEAREKMADIYLK-HRKDKMlyITCFREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQAL 499
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRlGRYDEA--LAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERAL 78
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 767919830  500 NQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKL 552
Cdd:COG4235    79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
905-1049 3.09e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 3.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  905 EHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAY 984
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA------FALLGEILLQLGDLDEAIVLLHEALELDPDEPEAR 75
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767919830  985 EYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTY 1049
Cdd:COG4783    76 LNLGLALLKAGDYDEALALLEKALKL-DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
521-742 3.89e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 53.38  E-value: 3.89e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  521 NYSMAITYYEAALKTGQKNYLCYDL--AELLLKLKWYDKAEKVLQHALAHEPVN------ELSALMEDGRCQVLLaKVYS 592
Cdd:COG3071    65 DYERRDEYLAQALELAPEAELAVLLtrAELLLDQGQAEQALATLEALRAGAPRHpqvlrlLLQAYRQLGDWEELL-ELLP 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  593 KMEKLGdAITAlQQARELQARV---LKRVQMEQPDA-------VPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALV 662
Cdd:COG3071   144 ALRKHK-ALSA-EEAQALERRAylgLLRQAARDAEAlkalwkaLPRAERRDPELAAAYARALIALGDHDEAERLLREALK 221
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  663 HCETDnkimlELARLY--LAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDN--YMT 738
Cdd:COG3071   222 RQWDP-----RLVRLYgrLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAeaYAE 296

                  ....
gi 767919830  739 LSRL 742
Cdd:COG3071   297 LARL 300
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
392-695 1.13e-06

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 51.83  E-value: 1.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  392 DAIHEFSGTSEEVrVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYitcfrEIAERMAN 471
Cdd:COG3071    74 AQALELAPEAELA-VLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELL-----ELLPALRK 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  472 PRsflLLGDAYMNILEPEeaivAYEQALNQNPKDGTLASKMGKALikthnysmaityyEAALKtgQKNYLCYDLAELLLK 551
Cdd:COG3071   148 HK---ALSAEEAQALERR----AYLGLLRQAARDAEALKALWKAL-------------PRAER--RDPELAAAYARALIA 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  552 LKWYDKAEKVLQHALAHEPVNELSALMedGRCQvllakvyskmekLGDAITALQQARELQArvlkrvqmEQPDAvPAQKH 631
Cdd:COG3071   206 LGDHDEAERLLREALKRQWDPRLVRLY--GRLQ------------GGDPAKQLKRAEKWLK--------KHPND-PDLLL 262
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830  632 LAAEICaeiakhsVAQRDYEKAIKFYREALVHcETDNKIMLELARLYLAQDDPDS---CLRQCALLL 695
Cdd:COG3071   263 ALGRLC-------LRNQLWGKAREYLEAALAL-RPSAEAYAELARLLEQLGDPEEaaeHYRKALALA 321
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
646-736 2.59e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 2.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  646 AQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLrQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHL 725
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
                          90
                  ....*....|.
gi 767919830  726 QQLLERKPDNY 736
Cdd:COG3063    83 ERALELDPSAL 93
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
62-206 3.65e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 3.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   62 LLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDAdqqLEFLNEIQQSI 141
Cdd:COG2956   132 VLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEA---IAALERALEQD 208
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767919830  142 GKSAELIYLHAVLAMKKNkRQEEVINLLNDVLDTHFSQLEGLPLGIQYFEKLNPDFLLEIVMEYL 206
Cdd:COG2956   209 PDYLPALPRLAELYEKLG-DPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
62-293 3.75e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 3.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   62 LLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDAdqqLEFLNEIQQSI 141
Cdd:COG2956    64 IHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKA---IEVLERLLKLG 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  142 GKSAELIYLHAVLAMKKNKRqEEVINLLNDVLDTHfsqleglplgiqyfeKLNPDFLLEIVMEYLSFcpmqpaspGQPlc 221
Cdd:COG2956   141 PENAHAYCELAELYLEQGDY-DEAIEALEKALKLD---------------PDCARALLLLAELYLEQ--------GDY-- 194
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767919830  222 pllRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSyADAHLLLAQVYLSQEKVK 293
Cdd:COG2956   195 ---EEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLE 262
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
584-733 4.14e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.03  E-value: 4.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  584 QVLLAKVYSKMEKLGDAITALQQARELQARVLKRVQMEQPDAVPAQKHLAAEICAEIAKHsvAQRDYEKAIKFYREALVH 663
Cdd:COG5010     6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYN--KLGDFEESLALLEQALQL 83
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  664 CETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKP 733
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
223-428 9.98e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 9.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  223 LLRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELC 302
Cdd:COG2956    91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  303 LSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLhmamslpgmkrigastkskdRKTEVDTSHRLSIFLELIDVHRLNGE 382
Cdd:COG2956   171 LKLD---PDCARALLLLAELYLEQGDYEEAIAAL--------------------ERALEQDPDYLPALPRLAELYEKLGD 227
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 767919830  383 QHEATKVLQDAIHEFSGTSEEvrvtIANADLALAQGDIERALSILQ 428
Cdd:COG2956   228 PEEALELLRKALELDPSDDLL----LALADLLERKEGLEAALALLE 269
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
634-800 1.10e-05

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 47.37  E-value: 1.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  634 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 713
Cdd:NF040959   37 AKMYRNKGISHAKKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALL 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  714 RKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAekrnsrAKLEPGF-QYCKGLYLWYT--GEPN 790
Cdd:NF040959  117 KIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKA------LELDPNEiKYHQAIGFMYVqkGDHE 190
                         170
                  ....*....|
gi 767919830  791 DALRHFNKAR 800
Cdd:NF040959  191 TAAEHFKKAM 200
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
366-505 1.14e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 1.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  366 RLSIFLELIDVHRLNGEQHEATKVLQDAIHEFSgtsEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMA 445
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDP---DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767919830  446 DIYLK-HRKDKMlyITCFREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKD 505
Cdd:COG4783    80 LALLKaGDYDEA--LALLEKALKLDpEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
891-1007 1.62e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 1.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  891 QALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLL 970
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADA------LLDLAEALLAAGDTEEAEELL 74
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 767919830  971 KRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMA 1007
Cdd:COG4235    75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
695-801 2.24e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.00  E-value: 2.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  695 LQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSRaklEPG 774
Cdd:COG4235    10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD---NPE 86
                          90       100
                  ....*....|....*....|....*..
gi 767919830  775 FQYCKGLYLWYTGEPNDALRHFNKARK 801
Cdd:COG4235    87 ALYLLGLAAFQQGDYAEAIAAWQKLLA 113
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
888-977 2.64e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.00  E-value: 2.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  888 NVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAE 967
Cdd:COG4235    32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA------LYLLGLAAFQQGDYAEAI 105
                          90
                  ....*....|
gi 767919830  968 DLLKRCLRHN 977
Cdd:COG4235   106 AAWQKLLALL 115
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
950-1056 4.88e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.41  E-value: 4.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  950 WLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKA 1029
Cdd:COG4783     7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-DPDEPEARLNLGLALLKA 85
                          90       100
                  ....*....|....*....|....*..
gi 767919830 1030 KRYVDSIDICHQVLEAHPTYPKIRKDI 1056
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRL 112
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
480-570 8.90e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.06  E-value: 8.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  480 DAYMNILEPEEAIVAYEQALNQNPKDGTLAS---KMGKALIKTHNYSMAITYYEAALKTGQKNYLC----YDLAELLLKL 552
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdalLKLGLSYLEL 80
                          90
                  ....*....|....*...
gi 767919830  553 KWYDKAEKVLQHALAHEP 570
Cdd:COG1729    81 GDYDKARATLEELIKKYP 98
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
463-611 1.19e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.80  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  463 REIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLC 542
Cdd:COG5010    11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  543 Y-DLAELLLKLKWYDKAEKVLQHALAHEPVNELSALmedgrcqvLLAKVYSKMEKLGDAITALQQARELQ 611
Cdd:COG5010    91 YyNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS--------NLAALLLSLGQDDEAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
515-616 1.75e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 1.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  515 ALIKTHNYSMAITYYEAALKTGQKNYLCY-DLAELLLKLKWYDKAEKvLQHALAHEPvnelsalmEDGRCQVLLAKVYSK 593
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALnNLGLLLLEQGRYDEAIA-LEKALKLDP--------NNAEALLNLAELLLE 71
                          90       100
                  ....*....|....*....|...
gi 767919830  594 MEKLGDAITALQQARELQARVLK 616
Cdd:COG3063    72 LGDYDEALAYLERALELDPSALR 94
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
256-342 1.96e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.37  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  256 GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKT 335
Cdd:COG3914    92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDFAEAYLNLGEALRRLGRLEEAIAA 168

                  ....*..
gi 767919830  336 LHMAMSL 342
Cdd:COG3914   169 LRRALEL 175
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
20-151 2.06e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.37  E-value: 2.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   20 LENLGNTLDAME----------------PQNAQLFYNITLAFSRTcGRsqliLQKIQTLLERAFSLNPQQSEFATELGYQ 83
Cdd:COG3914   115 LFNLGNLLLALGrleealaalrralalnPDFAEAYLNLGEALRRL-GR----LEEAIAALRRALELDPDNAEALNNLGNA 189
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767919830   84 MILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEFLNEIQQSIGKSAELIYLH 151
Cdd:COG3914   190 LQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
945-1053 2.11e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 2.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  945 EFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAF 1024
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-DPDDAEALNNLGL 84
                          90       100
                  ....*....|....*....|....*....
gi 767919830 1025 NYLKAKRYVDSIDICHQVLEAHPTYPKIR 1053
Cdd:COG0457    85 ALQALGRYEEALEDYDKALELDPDDAEAL 113
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
224-342 2.26e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 2.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  224 LRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCL 303
Cdd:COG4783    20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 767919830  304 SYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 342
Cdd:COG4783   100 KLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
627-879 2.80e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.98  E-value: 2.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  627 PAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCEtdNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATM 706
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAA--ALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  707 MM----ADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDvprffsmAEKRNSRA-KLEPGF---QYC 778
Cdd:COG3914    79 ALlelaALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE-------ALAALRRAlALNPDFaeaYLN 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  779 KGLYLWYTGEPNDALRHFNKArkdrdwgqnalynmieICLNPDNEtvggEVFENldgdLGNSTEKQESVQLAVRTAEKLL 858
Cdd:COG3914   152 LGEALRRLGRLEEAIAALRRA----------------LELDPDNA----EALNN----LGNALQDLGRLEEAIAAYRRAL 207
                         250       260
                  ....*....|....*....|..
gi 767919830  859 kELKPQTVQGHVQ-LRIMENYC 879
Cdd:COG3914   208 -ELDPDNADAHSNlLFALRQAC 228
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
9-132 3.75e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 3.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830    9 REGDIEKAstklENLGNTLDAMEPQNAQLFYNITLAFSRTcGRsqliLQKIQTLLERAFSLNPQQSEFATELGYQMILQG 88
Cdd:COG4783    16 LAGDYDEA----EALLEKALELDPDNPEAFALLGEILLQL-GD----LDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 767919830   89 RVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 132
Cdd:COG4783    87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALE 130
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
836-977 6.05e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.33  E-value: 6.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  836 DLGNSTEKQESVQLAVRTAEKLLKeLKPQTVQGHVQLrimeNYCLMATKQksnVEQALNTFTEIAASEKEHIPALLGMAT 915
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALE-LDPDNPEAFALL----GEILLQLGD---LDEAIVLLHEALELDPDEPEARLNLGL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767919830  916 AYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHN 977
Cdd:COG4783    81 ALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
228-320 6.24e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.83  E-value: 6.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  228 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQ----EKVKLCSQSLELCL 303
Cdd:COG3914   132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLgrleEAIAAYRRALELDP 211
                          90
                  ....*....|....*..
gi 767919830  304 SYDfKVRDYPLYHLIKA 320
Cdd:COG3914   212 DNA-DAHSNLLFALRQA 227
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
471-540 6.54e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 6.54e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  471 NPRSFLLLGDAYMNILEPEEAIvAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNY 540
Cdd:COG3063    25 NADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
386-534 7.00e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 7.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  386 ATKVLQDAIHEFSGTSEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYITCFREI 465
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  466 AERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK 534
Cdd:COG5010    81 LQLDpNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
463-619 7.40e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.56  E-value: 7.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  463 REIAERMA---NPRSFLLLGDAYMNILEPEEAIVAYEQALNQN-PKDGTLASKMGKALIKTHNYSMAITYYEAALKT--- 535
Cdd:COG4700    77 RELEKALEfadTVQNRVRLADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKnpd 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  536 --GQKNYLCYDLAelLLKLKWYDKAEKVLQHALAHEPVNElsalmedGRCQvlLAKVYSKMEKLGDAITALQQ------- 606
Cdd:COG4700   157 fkSSDAHLLYARA--LEALGDLEAAEAELEALARRYSGPE-------ARYR--YAKFLARQGRTAEAKELLEEildeakh 225
                         170
                  ....*....|....*..
gi 767919830  607 ----ARELQARVLKRVQ 619
Cdd:COG4700   226 mpkhYRRLNREWIREAK 242
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
956-1047 7.95e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 7.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  956 IYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYtDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDS 1035
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY-DEAIALEKALKL-DPNNAEALLNLAELLLELGDYDEA 78
                          90
                  ....*....|..
gi 767919830 1036 IDICHQVLEAHP 1047
Cdd:COG3063    79 LAYLERALELDP 90
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
647-734 8.67e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 8.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  647 QRDYEKAIKFYREALVHCETDN---KIMLELARLYLAQDDPDSCLRQCALLLQSDQDNE---AATMMMADLMFRKQDYEQ 720
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDK 85
                          90
                  ....*....|....
gi 767919830  721 AVFHLQQLLERKPD 734
Cdd:COG1729    86 ARATLEELIKKYPD 99
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
242-342 9.95e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.56  E-value: 9.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  242 LQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQ 321
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD---PDEPEARLNLGL 80
                          90       100
                  ....*....|....*....|.
gi 767919830  322 SQKKMGEIADAIKTLHMAMSL 342
Cdd:COG4783    81 ALLKAGDYDEALALLEKALKL 101
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
459-535 1.14e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  459 ITCFREIAERMAN----PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLAS---KMGKALIKTHNYSMAITYYEA 531
Cdd:COG1729    13 IAAFKAFLKRYPNsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDKARATLEE 92

                  ....
gi 767919830  532 ALKT 535
Cdd:COG1729    93 LIKK 96
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
514-609 1.32e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 1.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  514 KALIKTHNYSMAITYYEAALKTGQKNYL----CYDLAELLLKLKWYDKAEKVLQHALAHEPVNELSAlmedgRCQVLLAK 589
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNSPLapdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP-----DALLKLGL 75
                          90       100
                  ....*....|....*....|
gi 767919830  590 VYSKMEKLGDAITALQQARE 609
Cdd:COG1729    76 SYLELGDYDKARATLEELIK 95
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
10-132 1.52e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.44  E-value: 1.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   10 EGDIEKASTKLENLGNTLDAMEPQNAQLFYNITLAFSRtCGRSQLILQkiqtLLERAFSLNPQQSEFATELGYQMILQGR 89
Cdd:COG4785    48 LAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDS-LGDYDLAIA----DFDQALELDPDLAEAYNNRGLAYLLLGD 122
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 767919830   90 VKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 132
Cdd:COG4785   123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLE 165
TPR_19 pfam14559
Tetratricopeptide repeat;
255-321 1.63e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.95  E-value: 1.63e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830   255 SGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKlcsQSLELCLSYDFKVRDYPLYHLIKAQ 321
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLD---EAEALLAALPAADPDDPRYAALLAK 64
TPR_19 pfam14559
Tetratricopeptide repeat;
647-711 1.68e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.95  E-value: 1.68e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767919830   647 QRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADL 711
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
677-769 1.95e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 1.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  677 LYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVfHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVP 756
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
                          90
                  ....*....|...
gi 767919830  757 RFFSMAEKRNSRA 769
Cdd:COG3063    80 AYLERALELDPSA 92
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
695-799 2.36e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.76  E-value: 2.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  695 LQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSRAklePG 774
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD---AE 77
                          90       100
                  ....*....|....*....|....*
gi 767919830  775 FQYCKGLYLWYTGEPNDALRHFNKA 799
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKA 102
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
639-754 3.10e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 40.22  E-value: 3.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  639 EIAKHSVAQRDYEKAIKFYREALVHCETDN---KIMLELARLYLAQDDPDSclrqcAL-LLQSDQDNEAATMM---MADL 711
Cdd:COG2976    95 LLAKAAVDAGDLDKAAAQLQWVLDNAKDPAlkaLARLRLARVLLAQKKYDE-----ALaTLDAVKPEAFAALYaelRGDI 169
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 767919830  712 MFRKQDYEQAVFHLQQLLERKPDNYMtLSRLIDLlrrcgKLED 754
Cdd:COG2976   170 LLAQGDKAEARAAYQKALAALPEDAP-LRQLLQM-----KLDD 206
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
413-504 3.58e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 3.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  413 LALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLyITCFREIAERMANPRSFLLLGDAYMNILEPEEAI 492
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
                          90
                  ....*....|..
gi 767919830  493 VAYEQALNQNPK 504
Cdd:COG3063    80 AYLERALELDPS 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
885-979 3.72e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 3.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  885 QKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARnQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYD 964
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEA------LLNLAELLLELGDYD 76
                          90
                  ....*....|....*
gi 767919830  965 MAEDLLKRCLRHNRS 979
Cdd:COG3063    77 EALAYLERALELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
946-1058 3.77e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 3.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  946 FEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKySNRTNPAVGYKLAFN 1025
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE-RDPDRAEALLELAQD 85
                          90       100       110
                  ....*....|....*....|....*....|...
gi 767919830 1026 YLKAKRYVDSIDICHQVLEAHPTYPKIRKDILD 1058
Cdd:COG2956    86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
256-342 4.02e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 4.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  256 GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLcSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKT 335
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDE-AIALEKALKLD---PNNAEALLNLAELLLELGDYDEALAY 81

                  ....*..
gi 767919830  336 LHMAMSL 342
Cdd:COG3063    82 LERALEL 88
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
61-174 5.39e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.75  E-value: 5.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   61 TLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEFLNEIQqs 140
Cdd:COG3914    99 ALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD-- 176
                          90       100       110
                  ....*....|....*....|....*....|....
gi 767919830  141 iGKSAElIYLHAVLAMKKNKRQEEVINLLNDVLD 174
Cdd:COG3914   177 -PDNAE-ALNNLGNALQDLGRLEEAIAAYRRALE 208
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
228-342 6.21e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 6.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  228 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDf 307
Cdd:COG0457    28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD- 106
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 767919830  308 kvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 342
Cdd:COG0457   107 --PDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
29-132 6.26e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 6.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830   29 AMEPQNAQLFYNITLAFSRTcGRSQLILQkiqtLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSV 108
Cdd:COG0457    70 ELDPDDAEALNNLGLALQAL-GRYEEALE----DYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
                          90       100
                  ....*....|....*....|....
gi 767919830  109 SALVGFIQCQLIEGQLQDADQQLE 132
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELLE 168
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
925-1047 7.29e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 7.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  925 RARNQLKRIAKMNWNAIDAEEFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNY 1004
Cdd:COG5010    32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY 111
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 767919830 1005 EMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHP 1047
Cdd:COG5010   112 EKALAL-SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
62-132 7.78e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 7.78e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767919830   62 LLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 132
Cdd:COG5010    76 LLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
228-342 8.15e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 8.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830  228 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDf 307
Cdd:COG4235     3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD- 81
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 767919830  308 kvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 342
Cdd:COG4235    82 --PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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