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Conserved domains on  [gi|767925884|ref|XP_011510789|]
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probable G-protein coupled receptor 156 isoform X2 [Homo sapiens]

Protein Classification

G protein-coupled receptor family protein; olfactory receptor( domain architecture ID 11607158)

G protein-coupled receptor family protein is a seven-transmembrane G protein-coupled receptor (7TM-GPCR) family protein which typically transmits an extracellular signal into the cell by the conformational rearrangement of the 7TM helices and by the subsequent binding and activation of an intracellular heterotrimeric G protein; GPCR ligands include light-sensitive compounds, odors, pheromones, hormones, and neurotransmitters; olfactory receptor plays a central role in olfaction or the sense of smell, similar to human family 6 olfactory receptors; belongs to the class A rhodopsin-like family of G protein-coupled receptors; binding of an odorant to the olfactory receptor induces a conformational change that leads to the activation of the olfactory-specific G protein (Golf)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7tmC_GPR156 cd15292
orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; ...
1-236 1.58e-144

orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; This subgroup represents orphan GPR156 that is closely related to the type B receptor for gamma-aminobutyric acid (GABA-B), which is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


:

Pssm-ID: 320419  Cd Length: 268  Bit Score: 423.38  E-value: 1.58e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884   1 MSSPNLNIVTLLGSCLTYSSAYLFGIQDVlvGSSMETLIQTRLSMLCIGTSLVFGPILGKSWRLYKVFTQRVPDKRVIIK 80
Cdd:cd15292   35 MSSPNLNVVTLLGSILTYTSGFLFGIQEP--GTSMETIFQVRIWLLCIGTSLVFGPILGKSWRLYRVFTQRVPDKRVIIK 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  81 DLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVSMTVTGKDVSCTSTSTHFCASRYSDVWIALIWGCKGLLLLYGAY 160
Cdd:cd15292  113 DIQLLGLVAGLIFADVLLLLTWVLTDPVQCARSLSAVIKAMEKGISYSVSRMDFCASLYSDLWIILISGFKGSLLLYGTY 192
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767925884 161 LAGLTGHVSSPPVNQSLTIMVGVNLLVLAAGLLFVVTRYLHSWPNLVFGLTSGGIFVCTTTINCFIFIPQLKQWKA 236
Cdd:cd15292  193 LAGLTSNVSSPPVNQSLTIMVGVNLVTLTAGVVFPVTRFLHSWPNLVYGTTSGGIFVCTTTINCLIFIPQLKQWKQ 268
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
315-632 8.67e-06

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.40  E-value: 8.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  315 PEGAAPPASSPNKDVqAVASVHTLAAAQGPSGHLSDFQNDPGMAARDSQCTSGPSSYAQSLEGP--GKDSSFSPGKEEKI 392
Cdd:PHA03307  160 AAVASDAASSRQAAL-PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPapGRSAADDAGASSSD 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  393 SDSKDfsdhlDSGCSQKPWTEQSLGPERGDQVPMNPSQSLLPERGGSDPQRQRhlenSEEPPERRSRVSSVIREKlqevl 472
Cdd:PHA03307  239 SSSSE-----SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS----SSSSPRERSPSPSPSSPG----- 304
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  473 qdlglGPEASLSTAPSCHQ--QTWKNSAAFSPQKmPLSKELGFSPymvrrrraaqrarSHFPGSAPSSVGHRANRTVPGA 550
Cdd:PHA03307  305 -----SGPAPSSPRASSSSssSRESSSSSTSSSS-ESSRGAAVSP-------------GPSPSRSPSPSRPPPPADPSSP 365
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  551 HSRlhvQNGDSPSLAPQTTDSRVRRPSSRK-PSLPSDPQDRPGTLEGSKQSQTEPEGARGSKAAFLRQP----SGS---G 622
Cdd:PHA03307  366 RKR---PRPSRAPSSPAASAGRPTRRRARAaVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPlltpSGEpwpG 442
                         330
                  ....*....|
gi 767925884  623 RAPSPAAPCL 632
Cdd:PHA03307  443 SPPPPPGRVR 452
 
Name Accession Description Interval E-value
7tmC_GPR156 cd15292
orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; ...
1-236 1.58e-144

orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; This subgroup represents orphan GPR156 that is closely related to the type B receptor for gamma-aminobutyric acid (GABA-B), which is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320419  Cd Length: 268  Bit Score: 423.38  E-value: 1.58e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884   1 MSSPNLNIVTLLGSCLTYSSAYLFGIQDVlvGSSMETLIQTRLSMLCIGTSLVFGPILGKSWRLYKVFTQRVPDKRVIIK 80
Cdd:cd15292   35 MSSPNLNVVTLLGSILTYTSGFLFGIQEP--GTSMETIFQVRIWLLCIGTSLVFGPILGKSWRLYRVFTQRVPDKRVIIK 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  81 DLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVSMTVTGKDVSCTSTSTHFCASRYSDVWIALIWGCKGLLLLYGAY 160
Cdd:cd15292  113 DIQLLGLVAGLIFADVLLLLTWVLTDPVQCARSLSAVIKAMEKGISYSVSRMDFCASLYSDLWIILISGFKGSLLLYGTY 192
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767925884 161 LAGLTGHVSSPPVNQSLTIMVGVNLLVLAAGLLFVVTRYLHSWPNLVFGLTSGGIFVCTTTINCFIFIPQLKQWKA 236
Cdd:cd15292  193 LAGLTSNVSSPPVNQSLTIMVGVNLVTLTAGVVFPVTRFLHSWPNLVYGTTSGGIFVCTTTINCLIFIPQLKQWKQ 268
7tm_3 pfam00003
7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane ...
1-229 1.95e-22

7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G pfam07562, which is the human sweet-taste receptor, and the N-terminal domain, ANF_receptor pfam01094. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness.


Pssm-ID: 459626 [Multi-domain]  Cd Length: 247  Bit Score: 96.96  E-value: 1.95e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884    1 MSSPNLNIVTLLGSCLTYSSAYLFGIQdvlvgssMETLIQTRLSMLCIGTSLVFGPILGKSWRLYKVFTQRVPdkrvIIK 80
Cdd:pfam00003  40 ASNRSLSFLLLLGLLLLFLLAFLFIGK-------PTVTCALRRFLFGVGFTLCFSCLLAKTFRLVLIFRRRKP----GPR 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884   81 DLQLLGLVAALLMADVILLMTWvLTDPIQCLQILSVSMTVTgkdVSCT-STSTHFCASRYSDVWIALIWGC----Kglll 155
Cdd:pfam00003 109 GWQLLLLALGLLLVQVIILTEW-LIDPPFPEKDNLSEGKII---LECEgSTSIAFLDFVLAYVGLLLLAGFllafK---- 180
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767925884  156 lygaylagltGHVSSPPVNQSLTIMVGVnLLVLAAGLLFVVTRYLHS----WPNLVFgLTSGGIFVCTTTINCFIFIP 229
Cdd:pfam00003 181 ----------TRKLPDNFNEAKFITFSM-LLSVLIWVAFIPMYLYGNkgkgTWDPVA-LAIFAILASGWVLLGLYFIP 246
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
315-632 8.67e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.40  E-value: 8.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  315 PEGAAPPASSPNKDVqAVASVHTLAAAQGPSGHLSDFQNDPGMAARDSQCTSGPSSYAQSLEGP--GKDSSFSPGKEEKI 392
Cdd:PHA03307  160 AAVASDAASSRQAAL-PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPapGRSAADDAGASSSD 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  393 SDSKDfsdhlDSGCSQKPWTEQSLGPERGDQVPMNPSQSLLPERGGSDPQRQRhlenSEEPPERRSRVSSVIREKlqevl 472
Cdd:PHA03307  239 SSSSE-----SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS----SSSSPRERSPSPSPSSPG----- 304
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  473 qdlglGPEASLSTAPSCHQ--QTWKNSAAFSPQKmPLSKELGFSPymvrrrraaqrarSHFPGSAPSSVGHRANRTVPGA 550
Cdd:PHA03307  305 -----SGPAPSSPRASSSSssSRESSSSSTSSSS-ESSRGAAVSP-------------GPSPSRSPSPSRPPPPADPSSP 365
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  551 HSRlhvQNGDSPSLAPQTTDSRVRRPSSRK-PSLPSDPQDRPGTLEGSKQSQTEPEGARGSKAAFLRQP----SGS---G 622
Cdd:PHA03307  366 RKR---PRPSRAPSSPAASAGRPTRRRARAaVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPlltpSGEpwpG 442
                         330
                  ....*....|
gi 767925884  623 RAPSPAAPCL 632
Cdd:PHA03307  443 SPPPPPGRVR 452
 
Name Accession Description Interval E-value
7tmC_GPR156 cd15292
orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; ...
1-236 1.58e-144

orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; This subgroup represents orphan GPR156 that is closely related to the type B receptor for gamma-aminobutyric acid (GABA-B), which is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320419  Cd Length: 268  Bit Score: 423.38  E-value: 1.58e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884   1 MSSPNLNIVTLLGSCLTYSSAYLFGIQDVlvGSSMETLIQTRLSMLCIGTSLVFGPILGKSWRLYKVFTQRVPDKRVIIK 80
Cdd:cd15292   35 MSSPNLNVVTLLGSILTYTSGFLFGIQEP--GTSMETIFQVRIWLLCIGTSLVFGPILGKSWRLYRVFTQRVPDKRVIIK 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  81 DLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVSMTVTGKDVSCTSTSTHFCASRYSDVWIALIWGCKGLLLLYGAY 160
Cdd:cd15292  113 DIQLLGLVAGLIFADVLLLLTWVLTDPVQCARSLSAVIKAMEKGISYSVSRMDFCASLYSDLWIILISGFKGSLLLYGTY 192
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767925884 161 LAGLTGHVSSPPVNQSLTIMVGVNLLVLAAGLLFVVTRYLHSWPNLVFGLTSGGIFVCTTTINCFIFIPQLKQWKA 236
Cdd:cd15292  193 LAGLTSNVSSPPVNQSLTIMVGVNLVTLTAGVVFPVTRFLHSWPNLVYGTTSGGIFVCTTTINCLIFIPQLKQWKQ 268
7tmC_GABA-B-like cd15047
gamma-aminobutyric acid type B receptor and related proteins, member of the class C family of ...
1-235 2.88e-56

gamma-aminobutyric acid type B receptor and related proteins, member of the class C family of seven-transmembrane G protein-coupled receptors; The type B receptor for gamma-aminobutyric acid, GABA-B, is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism. Also included in this group are orphan receptors, GPR156 and GPR158, which are closely related to the GABA-B receptor family.


Pssm-ID: 320175  Cd Length: 263  Bit Score: 192.78  E-value: 2.88e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884   1 MSSPNLNIVTLLGSCLTYSSAYLFGIQDvlvGSSMETLIQTRLSMLCIGTSLVFGPILGKSWRLYKVFTQRVPdKRVIIK 80
Cdd:cd15047   35 MSSPLFNNLILLGCILCYISVILFGLDD---SKPSSFLCTARPWLLSIGFTLVFGALFAKTWRIYRIFTNKKL-KRIVIK 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  81 DLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVSmtvTGKDVSCTSTSTHFCASRYSDVWIALIWGCKGLLLLYGAY 160
Cdd:cd15047  111 DKQLLKIVGILLLIDIIILILWTIVDPLKPTRVLVLS---EISDDVKYEYVVHCCSSSNGIIWLGILLAYKGLLLLFGCF 187
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767925884 161 LAGLTGHVSSPPVNQS----LTIMVGVNLLVLAAGLLFVVTrylhSWPNLVFGLTSGGIFVCTTTINCFIFIPQLKQWK 235
Cdd:cd15047  188 LAWKTRNVDIEEFNESkyigISIYNVLFLSVIGVPLSFVLT----DSPDTSYLIISAAILFCTTATLCLLFVPKFWLLK 262
7tmC_GABA-B-R2 cd15294
gamma-aminobutyric acid type B receptor subunit 2, member of the class C family of ...
1-235 5.36e-32

gamma-aminobutyric acid type B receptor subunit 2, member of the class C family of seven-transmembrane G protein-coupled receptors; The type B receptor for gamma-aminobutyric acid, GABA-B, is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320421  Cd Length: 270  Bit Score: 125.62  E-value: 5.36e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884   1 MSSPNLNIVTLLGSCLTYSSAYLFGIQDVLVG-SSMETLIQTRLSMLCIGTSLVFGPILGKSWRLYKVFTQrVPDKRVII 79
Cdd:cd15294   35 MSSPYMNNLIILGCMLTYASVILLGLDGSLVSeKTFETLCTARTWILCVGFTLAFGAMFSKTWRVHSIFTN-VKLNKKAI 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  80 KDLQLLGLVAALLMADVILLMTWVLTDPIQ-CLQILSVSMTVTGKDVSCTSTSTHfCASRYSDVWIALIWGCKGLLLLYG 158
Cdd:cd15294  114 KDYKLFIIVGVLLLIDICILITWQIVDPFYrTVKELEPEPDPAGDDILIRPELEY-CESTHMTIFLGIIYAYKGLLMVFG 192
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767925884 159 AYLAGLTGHVSSPPVNQSLTIMVGVNLLVLAAGLLFVVTRYLHSWPNLVFGLTSGGIFVCTTTINCFIFIPQLKQWK 235
Cdd:cd15294  193 CFLAWETRNVSIPALNDSKYIGMSVYNVVIMCVIGAAVSFILRDQPNVQFCIISLFIIFCTTITLCLVFVPKLIELR 269
7tm_3 pfam00003
7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane ...
1-229 1.95e-22

7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G pfam07562, which is the human sweet-taste receptor, and the N-terminal domain, ANF_receptor pfam01094. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness.


Pssm-ID: 459626 [Multi-domain]  Cd Length: 247  Bit Score: 96.96  E-value: 1.95e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884    1 MSSPNLNIVTLLGSCLTYSSAYLFGIQdvlvgssMETLIQTRLSMLCIGTSLVFGPILGKSWRLYKVFTQRVPdkrvIIK 80
Cdd:pfam00003  40 ASNRSLSFLLLLGLLLLFLLAFLFIGK-------PTVTCALRRFLFGVGFTLCFSCLLAKTFRLVLIFRRRKP----GPR 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884   81 DLQLLGLVAALLMADVILLMTWvLTDPIQCLQILSVSMTVTgkdVSCT-STSTHFCASRYSDVWIALIWGC----Kglll 155
Cdd:pfam00003 109 GWQLLLLALGLLLVQVIILTEW-LIDPPFPEKDNLSEGKII---LECEgSTSIAFLDFVLAYVGLLLLAGFllafK---- 180
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767925884  156 lygaylagltGHVSSPPVNQSLTIMVGVnLLVLAAGLLFVVTRYLHS----WPNLVFgLTSGGIFVCTTTINCFIFIP 229
Cdd:pfam00003 181 ----------TRKLPDNFNEAKFITFSM-LLSVLIWVAFIPMYLYGNkgkgTWDPVA-LAIFAILASGWVLLGLYFIP 246
7tmC_GABA-B-R1 cd15291
gamma-aminobutyric acid type B receptor subunit 1, member of the class C family of ...
2-233 1.79e-16

gamma-aminobutyric acid type B receptor subunit 1, member of the class C family of seven-transmembrane G protein-coupled receptors; The type B receptor for gamma-aminobutyric acid, GABA-B, is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320418  Cd Length: 274  Bit Score: 80.07  E-value: 1.79e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884   2 SSPNLNIVTLLGSCLTYSSAYLFGIQDVLVGSSMETLI-QTRLSMLCIGTSLVFGPILGKSWRLYKVFTQRVPDK--RVI 78
Cdd:cd15291   36 SQPHCNNVMLVGCILCLASVFLLGLDGRHVSRSHFPLVcQARLWLLCLGFTLAYGSMFTKVWRVHRLTTKKKEKKetRKT 115
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  79 IKDLQLLGLVAALLMADVILLMTWVLTDPIQ-CLQILSVSMTVTGKDVSCTSTSTHFCASRYSDVWIALIWGCKGLLLLY 157
Cdd:cd15291  116 LEPWKLYAVVGILLVVDVIILAIWQIVDPLHrTIEEFPLEEPKDTDEDVKILPQLEHCSSKKQNTWLGIVYGYKGLLLLF 195
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884 158 GAYLAGLTGHVSSPPVNQSLtiMVGV---NLLVLAagLLFV-VTRYLHSWPNLVFGLTSGGIFVCTTTINCFIFIPQLKQ 233
Cdd:cd15291  196 GLFLAYETRNVKVEKINDSR--FVGMsiyNVVVLC--LITApVTMIISSQQDASFAFVSLAILFSSYITLVLIFVPKIRE 271
7tm_classC_mGluR-like cd13953
metabotropic glutamate receptor-like class C family of seven-transmembrane G protein-coupled ...
2-131 2.66e-09

metabotropic glutamate receptor-like class C family of seven-transmembrane G protein-coupled receptors superfamily; The class C GPCRs consist of glutamate receptors (mGluR1-8), the extracellular calcium-sensing receptors (caSR), the gamma-amino-butyric acid type B receptors (GABA-B), the vomeronasal type-2 pheromone receptors (V2R), the type 1 taste receptors (TAS1R), and the promiscuous L-alpha-amino acid receptor (GPRC6A), as well as several orphan receptors. Structurally, these receptors are typically composed of a large extracellular domain containing a Venus flytrap module which possesses the orthosteric agonist-binding site, a cysteine-rich domain (CRD) with the exception of GABA-B receptors, and the seven-transmembrane domains responsible for G protein activation. Moreover, the Venus flytrap module shows high structural homology with bacterial periplasmic amino acid-binding proteins, which serve as primary receptors in transport of a variety of soluble substrates such as amino acids and polysaccharides, among many others. The class C GPCRs exist as either homo- or heterodimers, which are essential for their function. The GABA-B1 and GABA-B2 receptors form a heterodimer via interactions between the N-terminal Venus flytrap modules and the C-terminal coiled-coiled domains. On the other hand, heterodimeric CaSRs and Tas1Rs and homodimeric mGluRs utilize Venus flytrap interactions and intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD), which can also acts as a molecular link to mediate the signal between the Venus flytrap and the 7TMs. Furthermore, members of the class C GPCRs bind a variety of endogenous ligands, ranging from amino acids, ions, to pheromones and sugar molecules, and play important roles in many physiological processes such as synaptic transmission, calcium homeostasis, and the sensation of sweet and umami tastes.


Pssm-ID: 320091 [Multi-domain]  Cd Length: 251  Bit Score: 58.40  E-value: 2.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884   2 SSPNLNIVTLLGSCLTYSSAYLFgiqdvlVGSSMETLIQTRLSMLCIGTSLVFGPILGKSWRLYKVFTQRVP--DKRVII 79
Cdd:cd13953   36 SNRELSYLLLFGILLCFLLAFLF------LLPPSDVLCGLRRFLFGLSFTLVFSTLLVKTNRIYRIFKSGLRssLRPKLL 109
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 767925884  80 KDLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVSMTVTgkdVSCTSTS 131
Cdd:cd13953  110 SNKSQLLLVLFLLLVQVAILIVWLILDPPKVEKVIDSDNKVV---ELCCSTG 158
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
315-632 8.67e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.40  E-value: 8.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  315 PEGAAPPASSPNKDVqAVASVHTLAAAQGPSGHLSDFQNDPGMAARDSQCTSGPSSYAQSLEGP--GKDSSFSPGKEEKI 392
Cdd:PHA03307  160 AAVASDAASSRQAAL-PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPapGRSAADDAGASSSD 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  393 SDSKDfsdhlDSGCSQKPWTEQSLGPERGDQVPMNPSQSLLPERGGSDPQRQRhlenSEEPPERRSRVSSVIREKlqevl 472
Cdd:PHA03307  239 SSSSE-----SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS----SSSSPRERSPSPSPSSPG----- 304
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  473 qdlglGPEASLSTAPSCHQ--QTWKNSAAFSPQKmPLSKELGFSPymvrrrraaqrarSHFPGSAPSSVGHRANRTVPGA 550
Cdd:PHA03307  305 -----SGPAPSSPRASSSSssSRESSSSSTSSSS-ESSRGAAVSP-------------GPSPSRSPSPSRPPPPADPSSP 365
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  551 HSRlhvQNGDSPSLAPQTTDSRVRRPSSRK-PSLPSDPQDRPGTLEGSKQSQTEPEGARGSKAAFLRQP----SGS---G 622
Cdd:PHA03307  366 RKR---PRPSRAPSSPAASAGRPTRRRARAaVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPlltpSGEpwpG 442
                         330
                  ....*....|
gi 767925884  623 RAPSPAAPCL 632
Cdd:PHA03307  443 SPPPPPGRVR 452
7tmC_GPR158-like cd15293
orphan GPR158 and similar proteins, member of the class C family of seven-transmembrane G ...
48-231 1.88e-05

orphan GPR158 and similar proteins, member of the class C family of seven-transmembrane G protein-coupled receptors; This group includes orphan receptors GPR158, GPR158-like (also called GPR179) and similar proteins. These orphan receptors are closely related to the type B receptor for gamma-aminobutyric acid (GABA-B), which is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320420  Cd Length: 252  Bit Score: 46.82  E-value: 1.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884  48 IGTSLVFGPILGKSWRLYKVFTQRVpDKRVIIKDLQLLGLVAALLMADVILLMTWVLTDPiqclQILSVSMTVTGKDVsc 127
Cdd:cd15293   76 LGFAIVYGALILKTYRILVVFRSRS-ARRVHLTDRDLLKRLGLIVLVVLGYLAAWTAVNP----PNVEVGLTLTSSGL-- 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925884 128 tstSTHFC-ASRYSDVW-----IALIWG---CKGllllygaylagltghVSSPP--VNQSLTIMVGV-NLLVLAAGL--- 192
Cdd:cd15293  149 ---KFNVCsLDWWDYVMaiaelLFLLWGvylCYA---------------VRKAPsaFNESRYISLAIyNELLLSVIFnii 210
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 767925884 193 LFVVTRYLHswPNLVFGLTSGGIFVCTTTINCFIFIPQL 231
Cdd:cd15293  211 RFFLLPSLH--PDLLFLLFFLHTQLTVTVTLLLIFGPKF 247
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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