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Conserved domains on  [gi|767934533|ref|XP_011512381|]
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large ribosomal subunit protein bL36m isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
132-169 1.54e-17

Ribosomal protein L36;


:

Pssm-ID: 459811  Cd Length: 38  Bit Score: 71.39  E-value: 1.54e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 767934533  132 FKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 169
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
132-169 1.54e-17

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 71.39  E-value: 1.54e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 767934533  132 FKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 169
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 133-168 6.28e-13

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 59.75  E-value: 6.28e-13
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 767934533 133 KNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 168
Cdd:COG0257    2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQ 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 138-168 2.28e-09

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 50.38  E-value: 2.28e-09
                         10        20        30
                 ....*....|....*....|....*....|.
gi 767934533 138 LKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 168
Cdd:PRK00831  10 LKNRHRDCQVVRRKGRVYVINKKNPRFKARQ 40
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
132-169 1.54e-17

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 71.39  E-value: 1.54e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 767934533  132 FKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 169
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 133-168 6.28e-13

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 59.75  E-value: 6.28e-13
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 767934533 133 KNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 168
Cdd:COG0257    2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQ 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 138-168 2.28e-09

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 50.38  E-value: 2.28e-09
                         10        20        30
                 ....*....|....*....|....*....|.
gi 767934533 138 LKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 168
Cdd:PRK00831  10 LKNRHRDCQVVRRKGRVYVINKKNPRFKARQ 40
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 133-168 2.25e-07

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 44.94  E-value: 2.25e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 767934533 133 KNKTVLKKRCKDCYLVKRRGRWYVYCKThPRHKQRQ 168
Cdd:PRK00465   2 KVRASVKKICEKCKVIKRKGVVRVICEN-PKHKQRQ 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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